Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2382857
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.28
Warning! 280777 characters in sequence are not A, C, G, or T
File 1 of 12
Found at i:1352 original size:28 final size:28
Alignment explanation
Indices: 1287--1366 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 28
1277 CCTCATCCTC
*
1287 ACCTTCAAAAG-CCATAAGTTAGTGGCA
1 ACCTTCAAAAGCCCATAAGTCAGTGGCA
* * **
1314 TCTTTTTAAAGCCCATAAGTCAGTGGCA
1 ACCTTCAAAAGCCCATAAGTCAGTGGCA
* *
1342 ACCTTCAAAAGCCCATGACTCAGTG
1 ACCTTCAAAAGCCCATAAGTCAGTG
1367 ATCTCTTCTC
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
27 7 0.17
28 34 0.83
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (28 bp):
ACCTTCAAAAGCCCATAAGTCAGTGGCA
Found at i:1411 original size:30 final size:31
Alignment explanation
Indices: 1344--1878 Score: 524
Period size: 30 Copynumber: 17.4 Consensus size: 31
1334 CAGTGGCAAC
* * *
1344 CTTCAAAAGCCCATGACTCAGT-G-ATCTCTT
1 CTTC-AAAGTCCACGACTCAGTGGCATCTTTT
* *
1374 C-TCAAAGTCAATGACTCAGTGGCAT-TTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
* *
1403 CTTCAAAGTCCACAACTCAGTGGCATCTCTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
* *
1434 -TTCTAAGTCCACGACTCGGTGGCATCCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCAT-CTTTT
* *
1465 CTTTC-AAGTCCATGACTCAGTGGCATATTTT
1 C-TTCAAAGTCCACGACTCAGTGGCATCTTTT
*
1496 CTTCAAA-TCCACAACTCAGTGGCATCTCTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCT-TTT
* *
1527 C-T--AAGTCCACGAATTAGTGGCATCCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCAT-CTTTT
* * *
1556 CTCCCAAAGTCTACGACTCAATGGCATCTTTT
1 CT-TCAAAGTCCACGACTCAGTGGCATCTTTT
*
1588 CTTCAAAGTCCACAACTCAGTGGCATCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
* *
1619 CTTCAAAGTCCATGACTCAGTGGAAAT-TTCTT
1 CTTCAAAGTCCACGACTCAGTGG-CATCTT-TT
* * * *
1651 C-CCAAAGTCCCCGACTTAGTGGCATCTTGT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
* * *
1681 C-CCAAAGTCCACGATTCATTGGCATCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
* *
1711 CTTCAAAGTCCACAACTCAGTGGCATCTCTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
* *
1742 -TTCTATGTCCACGACTCAGTGGCATCCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCAT-CTTTT
* *
1773 CTTCCAAGTCCATGACTCAGTGGCATCTTTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATC--TTTT
**
1806 CTTCAAAGTCCACGACTCAGTGGCATCCCTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
* * *
1837 C-CCAAAGTCCATGGCTCAGTGGCATCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
1867 CTTCAAAGTCCA
1 CTTCAAAGTCCA
1879 TGCAATCTTT
Statistics
Matches: 416, Mismatches: 65, Indels: 47
0.79 0.12 0.09
Matches are distributed among these distances:
28 17 0.04
29 26 0.06
30 145 0.35
31 126 0.30
32 53 0.13
33 49 0.12
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (31 bp):
CTTCAAAGTCCACGACTCAGTGGCATCTTTT
Found at i:1488 original size:62 final size:61
Alignment explanation
Indices: 1344--1878 Score: 466
Period size: 62 Copynumber: 8.7 Consensus size: 61
1334 CAGTGGCAAC
* * * * *
1344 CTTCAAAAGCCCATGACTCAGT-G-ATCTCTTCTCAAAGTCAATGACTCAGTGGCAT-TTTT
1 CTTC-AAAGTCCACGACTCAGTGGCATCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTT
* * *
1403 CTTCAAAGTCCACAACTCAGTGGCATCTCTTTTCTAAGTCCACGACTCGGTGGCATCCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTCTTTTCAAAGTCCACGACTCAGTGGCAT-CTTTT
* * * *
1465 CTTTC-AAGTCCATGACTCAGTGGCATATTTTCTTCAAA-TCCACAACTCAGTGGCATCTCTTT
1 C-TTCAAAGTCCACGACTCAGTGGCATCTCTT-TTCAAAGTCCACGACTCAGTGGCATCT-TTT
* * * *
1527 C-T--AAGTCCACGAATTAGTGGCATC-CTTTTCTCCCAAAGTCTACGACTCAATGGCATCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTC-TTT-T--CAAAGTCCACGACTCAGTGGCATCTTTT
* * * *
1588 CTTCAAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGTCCATGACTCAGTGGAAAT-TTCTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTCTT-TTCAAAGTCCACGACTCAGTGG-CATCTT-TT
* * * ** * *
1651 C-CCAAAGTCCCCGACTTAGTGGCATCT-TGTCCCAAAGTCCACGATTCATTGGCATCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTCT-TTTCAAAGTCCACGACTCAGTGGCATCTTTT
* * *
1711 CTTCAAAGTCCACAACTCAGTGGCATCTCTTTTCTATGTCCACGACTCAGTGGCATCCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTCTTTTCAAAGTCCACGACTCAGTGGCAT-CTTTT
* * * **
1773 CTTCCAAGTCCATGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACGACTCAGTGGCATCCCTT
1 CTTCAAAGTCCACGACTCAGTGGCATC--TCTT-TTCAAAGTCCACGACTCAGTGGCATCTTTT
* * * *
1837 C-CCAAAGTCCATGGCTCAGTGGCATCTTTTCTTCAAAGTCCA
1 CTTCAAAGTCCACGACTCAGTGGCATCTCTT-TTCAAAGTCCA
1879 TGCAATCTTT
Statistics
Matches: 387, Mismatches: 62, Indels: 52
0.77 0.12 0.10
Matches are distributed among these distances:
58 15 0.04
59 26 0.07
60 33 0.09
61 88 0.23
62 137 0.35
63 35 0.09
64 29 0.07
65 24 0.06
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (61 bp):
CTTCAAAGTCCACGACTCAGTGGCATCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTT
Found at i:1507 original size:92 final size:93
Alignment explanation
Indices: 1372--1878 Score: 538
Period size: 92 Copynumber: 5.5 Consensus size: 93
1362 CAGTGATCTC
* * *
1372 TTCT-CAAAGTCAATGACTCAGTGGCAT-TTTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTT
1 TTCTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTTT
*
1435 TCTAAGTCCACGACTCGGTGGCATCCTT
66 TCTAAGTCCACGACTCAGTGGCATCCTT
* * * *
1463 TTCTTTC-AAGTCCATGACTCAGTGGCATATTTTCTTCAAA-TCCACAACTCAGTGGCATC-TCT
1 TTC-TCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTT
* *
1525 TTCTAAGTCCACGAATTAGTGGCATCCTT
65 TTCTAAGTCCACGACTCAGTGGCATCCTT
* *
1554 TTCTCCCAAAGTCTACGACTCAATGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTT
1 TTCT-CCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTT
* * *
1619 CTTCAAAGTCCATGACTCAGTGGAAAT--TT
65 -TTCTAAGTCCACGACTCAGTGG-CATCCTT
* * * * * * *
1648 CTTC-CCAAAGTCCCCGACTTAGTGGCATCTTGTC-CCAAAGTCCACGATTCATTGGCATCTTTT
1 -TTCTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTT
* *
1711 CTTCAAAGTCCACAACTCAGTGGCATCTCTT
65 -TTCTAAGTCCACGACTCAGTGGCATC-CTT
* * **
1742 TTCT---ATGTCCACGACTCAGTGGCATCCTTTTCTTCCAAGTCCATGACTCAGTGGCATCTTTT
1 TTCTCCAAAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTT
*
1804 TTCTTCAAAGTCCACGACTCAGTGGCATCC-C
65 TTC-T--AAGTCCACGACTCAGTGGCATCCTT
* *
1835 TTC-CCAAAGTCCATGGCTCAGTGGCATCTTTTCTTCAAAGTCCA
1 TTCTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCA
1879 TGCAATCTTT
Statistics
Matches: 349, Mismatches: 45, Indels: 41
0.80 0.10 0.09
Matches are distributed among these distances:
90 1 0.00
91 54 0.15
92 123 0.35
93 86 0.25
94 23 0.07
95 60 0.17
96 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (93 bp):
TTCTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTTT
TCTAAGTCCACGACTCAGTGGCATCCTT
Found at i:1899 original size:22 final size:23
Alignment explanation
Indices: 1860--1902 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
1850 GCTCAGTGGC
1860 ATCTTTTCTTCAAAGTCCATGCA
1 ATCTTTTCTTCAAAGTCCATGCA
*
1883 ATCTTTTC-TCAAGGTCCATG
1 ATCTTTTCTTCAAAGTCCATG
1903 ATTCAGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.40
Consensus pattern (23 bp):
ATCTTTTCTTCAAAGTCCATGCA
Found at i:1963 original size:27 final size:27
Alignment explanation
Indices: 1930--2103 Score: 78
Period size: 33 Copynumber: 5.7 Consensus size: 27
1920 TTTCTTTTCA
* *
1930 AAGTCCATAACTCTGTTGCACCCTTTT
1 AAGTCCACAACTCTGTGGCACCCTTTT
*
1957 AAGTCCACAATTCTGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCTGTGGCACC-----C-TTTT
* *
1990 AATGCCCACAACTCCGTGGCATCTTTTTCCTTTT
1 AA-GTCCACAACTCTGTGGCA-C-----CCTTTT
**
2024 AAGTCCACAACTCCATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-C-----CCTTTT
** *
2057 AAGTCCACAACTCAATAGCACCCTTTT
1 AAGTCCACAACTCTGTGGCACCCTTTT
*
2084 AAGTCCACAACTCCGTGGCA
1 AAGTCCACAACTCTGTGGCA
2104 TCTTTTTTCA
Statistics
Matches: 119, Mismatches: 15, Indels: 26
0.74 0.09 0.16
Matches are distributed among these distances:
27 42 0.35
32 2 0.02
33 51 0.43
34 21 0.18
35 2 0.02
40 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (27 bp):
AAGTCCACAACTCTGTGGCACCCTTTT
Found at i:2000 original size:34 final size:33
Alignment explanation
Indices: 1951--2141 Score: 196
Period size: 33 Copynumber: 5.9 Consensus size: 33
1941 TCTGTTGCAC
* *
1951 CCTTTTAAGTCCACAATTCTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
1984 CTTTTTAATGCCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAA-GTCCACAACTCCGTGGCACCTTTTT
* *
2018 CCTTTTAAGTCCACAACTCCATGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
** *
2051 CCTTTTAAGTCCACAACTCAATAGCA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
*
2078 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * * *
2111 TCATTTAAGTCTACAACTCCATGGCACCTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTT
2142 ATCTTTAAGA
Statistics
Matches: 131, Mismatches: 20, Indels: 14
0.79 0.12 0.08
Matches are distributed among these distances:
27 23 0.18
28 1 0.01
32 1 0.01
33 78 0.60
34 28 0.21
ACGTcount: A:0.22, C:0.30, G:0.11, T:0.37
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
Found at i:2083 original size:67 final size:67
Alignment explanation
Indices: 1951--2083 Score: 160
Period size: 67 Copynumber: 2.0 Consensus size: 67
1941 TCTGTTGCAC
* ** * * ** * *
1951 CCTTTTAAGTCCACAATTCTGTGGCACCTTTTTCTTTTTAATGCCCACAACTCCGTGGCATCTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAATGCCCACAACTCAATAGCACCTTT
2016 TT
66 TT
* *
2018 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAA-GTCCACAACTCAATAGCACCCTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAATGCCCACAACTCAATAGCACCTTT
2082 TT
66 TT
2084 AAGTCCACAA
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
66 19 0.35
67 36 0.65
ACGTcount: A:0.21, C:0.31, G:0.11, T:0.38
Consensus pattern (67 bp):
CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAATGCCCACAACTCAATAGCACCTTT
TT
Found at i:2118 original size:60 final size:60
Alignment explanation
Indices: 2018--2138 Score: 170
Period size: 60 Copynumber: 2.0 Consensus size: 60
2008 GCATCTTTTT
*
2018 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCAATAGCAC
1 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCATTTAAGTCCACAACTCAATAGCAC
* * * * * * *
2078 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTTTCATTTAAGTCTACAACTCCATGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCATTTAAGTCCACAACTCAATAGCAC
2138 C
1 C
2139 TTTATCTTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.25, C:0.32, G:0.11, T:0.32
Consensus pattern (60 bp):
CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCATTTAAGTCCACAACTCAATAGCAC
Found at i:2390 original size:39 final size:39
Alignment explanation
Indices: 2306--2406 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
2296 AATGCTGCTA
* *
2306 GCCTTGAATCAGCACATTGGCAAAAGCCCAATATCACTG
1 GCCTTGAATCAGCATATTGGCACAAGCCCAATATCACTG
* *
2345 GACTTGAATCAGCATATTGGCACAAGCCCAATATCCCTG
1 GCCTTGAATCAGCATATTGGCACAAGCCCAATATCACTG
* *
2384 GCCTTGAATAAACATATTGGCAC
1 GCCTTGAATCAGCATATTGGCAC
2407 CTTCATCTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.23
Consensus pattern (39 bp):
GCCTTGAATCAGCATATTGGCACAAGCCCAATATCACTG
Found at i:2577 original size:39 final size:39
Alignment explanation
Indices: 2534--3023 Score: 232
Period size: 39 Copynumber: 11.5 Consensus size: 39
2524 ATATCATAGT
*
2534 CCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGG
1 CCTTGAATCAGCATATTGGCATAAGCCCAATATCGCTGG
* * * *
2573 CCTTGAATCAACATATTGGCATCTTGTCTTTAAGACCAATGTCGCTAG
1 CCTTGAATCAGCATATTGGCA---------TAAGCCCAATATCGCTGG
* * * * * * *
2621 CTTTGAATCAGCACATTGGCACAAGCTCAATACCACTAG
1 CCTTGAATCAGCATATTGGCATAAGCCCAATATCGCTGG
* *
2660 CCTTGAATCAGCATATTGGCACCGTGCCTTTAAGGCCAATGTCGCTGG
1 CCTTGAATCAGCATATTGGCA---------TAAGCCCAATATCGCTGG
* * *
2708 CCTTGAATCAGCACA-T---ACAAGCCTAATATCGCTGG
1 CCTTGAATCAGCATATTGGCATAAGCCCAATATCGCTGG
* * *
2743 CCTTGAATCAACATATTGGCACCTTGCCTTTAAGACCAATGTCGCTGG
1 CCTTGAATCAGCATATTGGCA---------TAAGCCCAATATCGCTGG
*
2791 CCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGG
1 CCTTGAATCAGCATATTGGCATAAGCCCAATATCGCTGG
* *
2830 CCTTGAATCAGCATATTGGCACCTTGTTTTAAGACCAATGTCGCTGG
1 CCTTGAATCAGCATATTGGCA--------TAAGCCCAATATCGCTGG
* * *
2877 CCTTAAATCAGCATATTGGCACAAGCCCAATATCGCTAG
1 CCTTGAATCAGCATATTGGCATAAGCCCAATATCGCTGG
* * * * **
2916 CCGTGAATCAGCATATTGGCACCTTGCCTTTAAGACCAATGTTGCCAG
1 CCTTGAATCAGCATATTGGCA---------TAAGCCCAATATCGCTGG
* * * *
2964 CCTTCAATCAACACATTGGCACAAGCCCAATATCGCTGG
1 CCTTGAATCAGCATATTGGCATAAGCCCAATATCGCTGG
3003 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
3024 CCTTCATCTT
Statistics
Matches: 337, Mismatches: 66, Indels: 96
0.68 0.13 0.19
Matches are distributed among these distances:
35 27 0.08
36 1 0.00
39 150 0.45
44 1 0.00
47 37 0.11
48 121 0.36
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (39 bp):
CCTTGAATCAGCATATTGGCATAAGCCCAATATCGCTGG
Found at i:2627 original size:87 final size:87
Alignment explanation
Indices: 2534--3073 Score: 768
Period size: 87 Copynumber: 6.3 Consensus size: 87
2524 ATATCATAGT
* * *
2534 CCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCATCTTG
1 CCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
* *
2599 TCTTTAAGACCAATGTCGCTAG
66 CCTTTAAGACCAATGTCGCTGG
* * * * * *
2621 CTTTGAATCAGCACATTGGCACAAGCTCAATACCACTAGCCTTGAATCAGCATATTGGCACCGTG
1 CCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
*
2686 CCTTTAAGGCCAATGTCGCTGG
66 CCTTTAAGACCAATGTCGCTGG
* *
2708 CCTTGAATCAGCACA-T---ACAAGCCTAATATCGCTGGCCTTGAATCAACATATTGGCACCTTG
1 CCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
2769 CCTTTAAGACCAATGTCGCTGG
66 CCTTTAAGACCAATGTCGCTGG
*
2791 CCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
1 CCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
*
2856 -TTTTAAGACCAATGTCGCTGG
66 CCTTTAAGACCAATGTCGCTGG
* * * *
2877 CCTTAAATCAGCATATTGGCACAAGCCCAATATCGCTAGCCGTGAATCAGCATATTGGCACCTTG
1 CCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
* **
2942 CCTTTAAGACCAATGTTGCCAG
66 CCTTTAAGACCAATGTCGCTGG
* *
2964 CCTTCAATCAACACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-
1 CCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
* * *
3028 CATCTTTATGACCGATGTCGTTGG
66 C--CTTTAAGACCAATGTCGCTGG
3052 CCTTGAATCAGCACATTGGCAC
1 CCTTGAATCAGCACATTGGCAC
3074 CTTAACCATC
Statistics
Matches: 399, Mismatches: 47, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
83 74 0.19
84 1 0.00
86 82 0.21
87 207 0.52
88 35 0.09
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (87 bp):
CCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
CCTTTAAGACCAATGTCGCTGG
Found at i:3072 original size:49 final size:49
Alignment explanation
Indices: 2990--3366 Score: 382
Period size: 49 Copynumber: 7.6 Consensus size: 49
2980 TGGCACAAGC
* * *
2990 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTATGA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* *
3039 CCGATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAA-A
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGA
* * *
3090 TCCAATGTCGCCGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGT
1 -CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* * * *
3140 CCCATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* *
3189 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* * * * * * * * *
3238 CCGATATCGTTGGCCTTGAATCAACATATTGGCATCTTTAACATTCCTAAGC
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC-TT--TAAGA
* * ** * * *
3290 CCAATGTCACTAGCCTTGTCTCAGCACATTGGCA--TTCTTCTTGAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
* *
3337 CTAATGTCGCTGGCCATGAATCAGCACATT
1 CCAATGTCGCTGGCCTTGAATCAGCACATT
3367 ATCATTCTTC
Statistics
Matches: 267, Mismatches: 53, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
47 27 0.10
49 163 0.61
50 5 0.02
51 1 0.00
52 71 0.27
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (49 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA
Found at i:3306 original size:150 final size:148
Alignment explanation
Indices: 2986--3366 Score: 448
Period size: 150 Copynumber: 2.6 Consensus size: 148
2976 ACATTGGCAC
* * * *
2986 AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTATGACCGATGTCGTTG
1 AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTG
* *
3051 GCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAATCCAATGTCGCCGGCCTTGAATCAGC
66 GCCTTGAATCAGCACATTGGCACCTT-A-CATCTTTAAATCCAATATCGCCGGCCTTGAATCAAC
*
3116 ACATTGGCATCTTCATCTTT
129 ACATTGGCATCTTCAACTTT
*
3136 AAGTCCC-ATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCACT
1 AAG-CCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
* * **
3200 GGCCTTGAATCAGCACATTGGCACCTT-CATCTTTAAGTCCGATATCGTTGGCCTTGAATCAACA
65 GGCCTTGAATCAGCACATTGGCACCTTACATCTTTAAATCCAATATCGCCGGCCTTGAATCAACA
* *
3264 TATTGGCATCTTTAACATTCCT
130 CATTGGCATCTTCAAC-TT--T
* * * ** * * * *
3286 AAGCCCAATGTCACTAGCCTTGTCTCAGCACATTGGCA--TTCT-TCTTGAAGTCTAATGTCGCT
1 AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGACCAATGTCGCT
*
3348 GGCCATGAATCAGCACATT
65 GGCCTTGAATCAGCACATT
3367 ATCATTCTTC
Statistics
Matches: 200, Mismatches: 25, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
147 44 0.22
148 38 0.19
149 4 0.02
150 111 0.56
151 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (148 bp):
AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCACCTTACATCTTTAAATCCAATATCGCCGGCCTTGAATCAACAC
ATTGGCATCTTCAACTTT
Found at i:4112 original size:13 final size:13
Alignment explanation
Indices: 4094--4119 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4084 ACATAAGTGT
4094 TGTATCGATACAA
1 TGTATCGATACAA
4107 TGTATCGATACAA
1 TGTATCGATACAA
4120 AGCTACCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4169 original size:20 final size:20
Alignment explanation
Indices: 4144--4198 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
4134 CTGCTAAGGA
4144 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
4164 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
4184 TTTGTATCGATACAT
1 AATGTATCGATACAT
4199 CTGGAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:8187 original size:166 final size:165
Alignment explanation
Indices: 7802--8218 Score: 428
Period size: 166 Copynumber: 2.5 Consensus size: 165
7792 ATTCTCCATA
* * **
7802 TTTTCAAAATACAGAGTTTTCTTTTCTATAAATATTTT-TTGGGTGATTTTTCTTGGTTTTTAGT
1 TTTTCAAAATACAGAGTTTTCTATTCCATAAATATTTTCAAGGG-GATTTTTCTTGGTTTTTAGT
* * ** * **
7866 TTTTAAAATTTATCAAATATTATTATTTAATTTATATTAAATCAATTTTTAAAAATTCATTCATT
65 TTTTAAAATTCATCAAATATTATCATTTAATCCACATTAAATCAATTTGGAAAAATTCATTCATT
*
7931 TTCATTCATTTTTAATTTTTTCCTTGAAATTCCCTT
130 TTCATTCATTTTGAATTTTTTCCTTGAAATTCCCTT
* * ** * * * ** *
7967 ATTTCTGAAATATGGAGTTTTCTACTCCATATATGTTTTCGGGGGGATTTTTCTTGGTTTTTATT
1 TTTTC-AAAATACAGAGTTTTCTATTCCATAAATATTTTCAAGGGGATTTTTCTTGGTTTTTAGT
* * * *
8032 TTTTAAAATTCATCAGATATTATCATTTAATCCACATTAAATTAGTTTGGAAAGATTCATTCATT
65 TTTTAAAATTCATCAAATATTATCATTTAATCCACATTAAATCAATTTGGAAAAATTCATTCATT
* * *
8097 TTCCA-TGAGTTTTGAATTTTTTCTTTGAAATTTCCTT
130 TT-CATTCA-TTTTGAATTTTTTCCTTGAAATTCCCTT
* * * ** *
8134 GTTTTCAAAAAACCGAGTTTTCTATTCCATAAATATTTTCAAGGGGA-TTTTCTTTAG-TTAAAA
1 -TTTTCAAAATACAGAGTTTTCTATTCCATAAATATTTTCAAGGGGATTTTTC-TTGGTTTTTAG
*
8197 TTTTTAAAATTCATCTAATATT
64 TTTTTAAAATTCATCAAATATT
8219 GTTATTAACT
Statistics
Matches: 203, Mismatches: 43, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
165 4 0.02
166 130 0.64
167 65 0.32
168 4 0.02
ACGTcount: A:0.29, C:0.11, G:0.10, T:0.51
Consensus pattern (165 bp):
TTTTCAAAATACAGAGTTTTCTATTCCATAAATATTTTCAAGGGGATTTTTCTTGGTTTTTAGTT
TTTAAAATTCATCAAATATTATCATTTAATCCACATTAAATCAATTTGGAAAAATTCATTCATTT
TCATTCATTTTGAATTTTTTCCTTGAAATTCCCTT
Found at i:9511 original size:157 final size:157
Alignment explanation
Indices: 9235--9528 Score: 419
Period size: 157 Copynumber: 1.9 Consensus size: 157
9225 GATTATTGAT
* * * **
9235 GTGTTTTTATGAGATTTTAGTAATTGGGGACTAAAATGCAAATATGTAAAAGTTTAGGGACTTGG
1 GTGTTTGTATGAGATTTTAGTAATTAGGGACTAAAATGCAAATATATAAAAGTTTAGGGACACGG
* * * * * *
9300 TTGCAAAGATTTATCCCATGAAATTTTTGCTTGGCCGAAACATGCTAAATCATTTTTCCATGTTT
66 TTGCAAAAATTTATCCCATGAAATTTTTGCTAGGCCAAAACATGCTAAACCATTTTGCCATATTT
9365 CCCTTGCGGATTTGAAGGTTTGAAGGA
131 CCCTTGCGGATTTGAAGGTTTGAAGGA
* * *
9392 GTGTTTGTATGTGATTTTAGTAATTAGGGACTAAAATGCAAATATATTAAAGTTTGGGGACACGG
1 GTGTTTGTATGAGATTTTAGTAATTAGGGACTAAAATGCAAATATATAAAAGTTTAGGGACACGG
* *
9457 TTGCAAAAATTTGTCCCATGAAATTTTTGCTAGGCCAAAACATAG-TGAACCATTTTGCCATATT
66 TTGCAAAAATTTATCCCATGAAATTTTTGCTAGGCCAAAACAT-GCTAAACCATTTTGCCATATT
*
9521 TTCCTTGC
130 TCCCTTGC
9529 TTATTTGAGG
Statistics
Matches: 119, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
157 118 0.99
158 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (157 bp):
GTGTTTGTATGAGATTTTAGTAATTAGGGACTAAAATGCAAATATATAAAAGTTTAGGGACACGG
TTGCAAAAATTTATCCCATGAAATTTTTGCTAGGCCAAAACATGCTAAACCATTTTGCCATATTT
CCCTTGCGGATTTGAAGGTTTGAAGGA
Found at i:10511 original size:155 final size:153
Alignment explanation
Indices: 10317--10670 Score: 376
Period size: 155 Copynumber: 2.3 Consensus size: 153
10307 AATACCTTAA
* * * * *
10317 GGGTATT-GGATACTTTGACGTCAAAGGTATCCCCTAGGGGTATTTTGTAATTTTACTAGAATCG
1 GGGTATTAGG-TACTTTTACGTCGAAGGTAT-CCCTAGGGGTATTTTGTAATTTT-CTAAAACCA
* * * * *
10381 A-GTCTTAGGCCATCATTGGGT-TCACTTTTATGCTGAAGGTGCG-TATTTAGGGTAGGTTCATC
63 ACTTC-TAGGCCATCACTAGGTCTCA-TTTTATGCCGAAGGTG-GATATTTAGGATAGGTTCATC
10443 CCATTTAAAATCATTTTTAAG-TCTTTTAG
125 CCATTTAAAATCATTTTTAAGTTC-TTTAG
* *
10472 GGGTATTAGGTACTTTTACGTCGAAGGTATCCCTTAGGGGCATTTTTGTAATTTTTTAAAACCAA
1 GGGTATTAGGTACTTTTACGTCGAAGGTATCCC-TAGGGGTA-TTTTGTAATTTTCTAAAACCAA
* * * * *
10537 CTTCTAGGTCGTCACTAGGTCTGATTTTATGCCGAAGGTGGATATTTAGGATATGTTCATCCCTT
64 CTTCTAGGCCATCACTAGGTCTCATTTTATGCCGAAGGTGGATATTTAGGATAGGTTCATCCCAT
*
10602 TTAAAATCCTTTTTAAGTTCTTTAG
129 TTAAAATCATTTTTAAGTTCTTTAG
* * * * *
10627 AGGTATCAAGTGCTTTTACGTCGAAGGTATCACCTATGGGTATT
1 GGGTATTAGGTACTTTTACGTCGAAGGTATC-CCTAGGGGTATT
10671 CTGCAGATCT
Statistics
Matches: 167, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
154 6 0.04
155 139 0.83
156 22 0.13
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (153 bp):
GGGTATTAGGTACTTTTACGTCGAAGGTATCCCTAGGGGTATTTTGTAATTTTCTAAAACCAACT
TCTAGGCCATCACTAGGTCTCATTTTATGCCGAAGGTGGATATTTAGGATAGGTTCATCCCATTT
AAAATCATTTTTAAGTTCTTTAG
Found at i:21563 original size:21 final size:19
Alignment explanation
Indices: 21553--21652 Score: 82
Period size: 20 Copynumber: 5.3 Consensus size: 19
21543 GAAAGTTGTG
21553 AAAGCATGAAATGAAGATGC
1 AAAGCATGAAA-GAAGATGC
***
21573 AAAGCATGAAAG-TTTTG-
1 AAAGCATGAAAGAAGATGC
*
21590 AAAGCATGAAATGATGATGC
1 AAAGCATGAAA-GAAGATGC
**
21610 AAAGCATGAAAGTTG-TG-
1 AAAGCATGAAAGAAGATGC
*
21627 AAAGCATGAAATGATGATGC
1 AAAGCATGAAA-GAAGATGC
21647 AAAGCA
1 AAAGCA
21653 AGTAACGTGG
Statistics
Matches: 67, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
17 22 0.33
18 8 0.12
19 9 0.13
20 28 0.42
ACGTcount: A:0.46, C:0.09, G:0.25, T:0.20
Consensus pattern (19 bp):
AAAGCATGAAAGAAGATGC
Found at i:21586 original size:37 final size:37
Alignment explanation
Indices: 21543--21652 Score: 202
Period size: 37 Copynumber: 3.0 Consensus size: 37
21533 ATGAATGAAA
*
21543 GAAAGTTGTGAAAGCATGAAATGAAGATGCAAAGCAT
1 GAAAGTTGTGAAAGCATGAAATGATGATGCAAAGCAT
*
21580 GAAAGTTTTGAAAGCATGAAATGATGATGCAAAGCAT
1 GAAAGTTGTGAAAGCATGAAATGATGATGCAAAGCAT
21617 GAAAGTTGTGAAAGCATGAAATGATGATGCAAAGCA
1 GAAAGTTGTGAAAGCATGAAATGATGATGCAAAGCA
21653 AGTAACGTGG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.45, C:0.08, G:0.26, T:0.21
Consensus pattern (37 bp):
GAAAGTTGTGAAAGCATGAAATGATGATGCAAAGCAT
Found at i:21613 original size:29 final size:32
Alignment explanation
Indices: 21528--21650 Score: 104
Period size: 37 Copynumber: 3.5 Consensus size: 32
21518 TATTATAAAA
*
21528 AAATGATGAATG-AAAGAAAGTTGTGAAAGCATG
1 AAATGATG-ATGCAAAGATA-TTGTGAAAGCATG
* *
21561 AAATGAAGATGCAAAGCATGAAAGTTTTGAAAGCATG
1 AAATGATGATGCAAAG-AT---A-TTGTGAAAGCATG
21598 AAATGATGATGCAAAGCATGAAAGTTGTGAAAGCATG
1 AAATGATGATGCAAAG-AT---A-TTGTGAAAGCATG
21635 AAATGATGATGCAAAG
1 AAATGATGATGCAAAG
21651 CAAGTAACGT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
32 3 0.04
33 11 0.14
34 1 0.01
37 65 0.81
ACGTcount: A:0.46, C:0.07, G:0.26, T:0.21
Consensus pattern (32 bp):
AAATGATGATGCAAAGATATTGTGAAAGCATG
Found at i:27797 original size:16 final size:16
Alignment explanation
Indices: 27778--27870 Score: 75
Period size: 17 Copynumber: 5.7 Consensus size: 16
27768 CTCTAAATAA
27778 AAAATAAAAAAGAAAG
1 AAAATAAAAAAGAAAG
27794 AAAAATAAAAAAGAAAG
1 -AAAATAAAAAAGAAAG
* *
27811 AAAAATAAAAAAGTATG
1 -AAAATAAAAAAGAAAG
*
27828 -AAATAGAAAAAGTATAG
1 AAAATA-AAAAAG-AAAG
* *
27845 ATAACAAAAAA-AAGAG
1 AAAATAAAAAAGAA-AG
27861 AAAA-AAAAAA
1 AAAATAAAAAA
27871 CACTACATCC
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
15 12 0.19
16 11 0.17
17 37 0.59
18 3 0.05
ACGTcount: A:0.77, C:0.01, G:0.12, T:0.10
Consensus pattern (16 bp):
AAAATAAAAAAGAAAG
Found at i:27830 original size:17 final size:17
Alignment explanation
Indices: 27777--27823 Score: 94
Period size: 17 Copynumber: 2.8 Consensus size: 17
27767 TCTCTAAATA
27777 AAAAATAAAAAAGAAAG
1 AAAAATAAAAAAGAAAG
27794 AAAAATAAAAAAGAAAG
1 AAAAATAAAAAAGAAAG
27811 AAAAATAAAAAAG
1 AAAAATAAAAAAG
27824 TATGAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (17 bp):
AAAAATAAAAAAGAAAG
Found at i:27831 original size:15 final size:16
Alignment explanation
Indices: 27813--27842 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27803 AAAGAAAGAA
27813 AAATA-AAAAAGTATG
1 AAATAGAAAAAGTATG
27828 AAATAGAAAAAGTAT
1 AAATAGAAAAAGTAT
27843 AGATAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (16 bp):
AAATAGAAAAAGTATG
Found at i:30487 original size:126 final size:125
Alignment explanation
Indices: 30047--31721 Score: 883
Period size: 126 Copynumber: 13.3 Consensus size: 125
30037 AAAGTCGGCT
* * * * ** * *
30047 TGTCAGCTTTGACCCTGGAGACTTTCTTACCCTTCAGTCTGCCTGTCGGCTTTGATCCTAGAGA-
1 TGTCGGCTTTGACCTTGGAGACTTCCTCA-CCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC
** * * * *
30111 TTGCCTCA-CTTAAAGTCTGCCTGTCGGCTTTGACTTTTGAGACTTTTCTACCCTCAGTGTGCC
65 TT-CCT-ATC-TAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTGCC
* * * * * * *
30174 TATCGGCTTTGACCTTGGAGACTGCCTCA-CTCAAAGTCTACCTATCGGCTTTAACCCTAGACA-
1 TGTCGGCTTTGACCTTGGAGACTTCCTCACCT-AAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC
* * * * * * *
30237 TTTCTACCTTCAA-TCTACCTGT-GGACTTTGACCCTAGAGAC-TACCTTA--TTTAAAGTTTGC
65 TTCCTATC-TAAAGTCTGCCTGTCGG-CTTTGACCCTAGAGACTTTCC-TACCCTT--AGTCTGC
30297 C
125 C
* * * * * * ** * * *
30298 TATCAGCTTTAACCCTAGAGACTTTCCT-TCCTTCAGTCT-CCTTGTCAACTTTGACCTTGGAGA
1 TGTCGGCTTTGACCTTGGAGAC-TTCCTCACCTAAAGTCTGCC-TGTCAGCTTTGACCCTAGAGA
* * * *
30361 CTACCTCATCTAAAGTCTGTCTGTCGGCTTTGACCCAAGAGACTTTTCTACCCTTAGTCTGCC
64 CTTCCT-ATCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTGCC
* * * * * *
30424 TGTCGGCTTTGACCTTGGAGACTACCTCATCTAAAGTCTACCTGTCAACTTTGACCTTGGAGACT
1 TGTCGGCTTTGACCTTGGAGACTTCCTCACCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC-
** * * *
30489 TTCCT-TCCTTCAGTTTGCCTATCGGCTTTGACCCTAGAGACTTTTCTACCCTTAGTCTGCC
65 TTCCTAT-CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTGCC
* * * * *
30550 TGTTGACTTTGACCTTGAAGACTACCTCATCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGACT
1 TGTCGGCTTTGACCTTGGAGACTTCCTCACCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC-
* * * * * * * *
30615 TTCCTACCCTCAA-TCTACTTGTCGACTTTAACCCTAAAGAC-TGCCTTA--CTTAAAGTCTG-C
65 TTCCTA-TCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCC-TACCCTT--AGTCTGCC
* * * * *
30675 TGTCGGCTTTGACCCTAGAGACTTTCTTACCCT--AGTCTGCCTGTCGGCTTTGACCCTAGAGAC
1 TGTCGGCTTTGACCTTGGAGACTTCCTCA-CCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC
* * * * * * * * * **
30738 TGCCTCATCTAAAGTCTTCCTATTGACTTTGACCTTAGAGTCTTTCCTACCCTCAATCTGGT
65 TTCCT-ATCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTGCC
* * * * * *
30800 TATCGGCTTTGACCTTAGAGACTGT-CTCATCTAAAGTCTGCCTGTCGGCTTTGACCATAAAGAC
1 TGTCGGCTTTGACCTTGGAGACT-TCCTCACCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC
* * * * * * * * *
30864 ATTCCTACCCT-CAGTC-ACCTATCGGCTTTGACCCTTGAGAC-TACCT-CATCTAAAGTTTGCC
65 -TTCCTA-TCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTAC-CCT-TAGTCTGCC
* ** * * *
30925 TATTAGCTTTGACCTTGGAGACTTTCCT-ACCCT-CAGTCTACTTGTC-GACTTTGACCCTAGAG
1 TGTCGGCTTTGACCTTGGAGAC-TTCCTCA-CCTAAAGTCTGCCTGTCAG-CTTTGACCCTAGAG
* * * * * ** * * *
30987 ACTGCCCTATCTAAAGTCTGCCTATCGACTTTGACCTTGGAGACTTTTTTTCCCTCAGTTTGCC
63 ACT-TCCTATCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTGCC
* * * * * * * * *
31051 TATCGGCTTTGA-CTCTAGAGACTGCCTCACTTCAAGTTTGCTTGTCAGCTTTGACCTTGGAGAC
1 TGTCGGCTTTGACCT-TGGAGACTTCCTCACCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC
* * * * *
31115 TTTCCTACCCT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGA-TTGCCT-CATCTAAAGTCTGCC
65 -TTCCTA-TCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTAC-CCT-TAGTCTGCC
* * * * ** * * * *
31177 AGTCGACTTTGACCTTGGAGACTTTCTTACCCTTCAGTTTACCTGTCAACTTTGACACTAGAGAC
1 TGTCGGCTTTGACCTTGGAGACTTCCTCA-CCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC
* * * ** * * *
31242 TGCCT-TACTTAAAGTCTGCATATTAGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCT
65 TTCCTAT-C-TAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTGCC
* * *
31304 TGTCGGCTTTGACCCTGGAGACTGCCTC-CCTTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAT
1 TGTCGGCTTTGACCTTGGAGACTTCCTCACC-TAAAGTCTGCCTGTCAGCTTTGACCCTAGAGA-
* * * * * * * * * * *
31368 TTTCCTACTCT-CAGTCTGCCTGTCAGTTTTGACCTTAAAGAC-TGCCT-CATCTAAAGTTTGCG
64 CTTCCTA-TCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTAC-CCT-TAGTCTGCC
* * ** * * *
31430 TGTCAGCTTTGACCCTGGAGACTTTCCT-ACCTTTAGTGTACCTGTCAGCTTGGACCCTAGAGAC
1 TGTCGGCTTTGACCTTGGAGAC-TTCCTCACCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC
* * * * *
31494 TACCTCATCTAAAGTTTGCCTGTCGGCTTTAACCCTAGATATTTTCCTACCCTTAGTCTGCC
65 TTCCT-ATCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTGCC
* * * ** * *
31556 TGTTGACTTTGACTCTTAGAGACTTTCCT-ACCCTTCAGTCTGCTTGTCAGCTTTGA-CCTCGGA
1 TGTCGGCTTTGAC-CTTGGAGAC-TTCCTCA-CCTAAAGTCTGCCTGTCAGCTTTGACCCT-AGA
* * * * * *
31619 GACTGCCTCATCAAAAGTCTGCTTGTCGACTTTGACCCTGGAGACTTTCCTACCCTTCAATCTGC
62 GACTTCCT-ATCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTT-AGTCTGC
*
31684 T
125 C
* * * *
31685 TATCAGCTTTGACCCTT-GAGACTGCCTCACTTAAAGT
1 TGTCGGCTTTGA-CCTTGGAGACTTCCTCACCTAAAGT
31722 TTACTTATCG
Statistics
Matches: 1180, Mismatches: 287, Indels: 162
0.72 0.18 0.10
Matches are distributed among these distances:
122 1 0.00
123 15 0.01
124 142 0.12
125 181 0.15
126 559 0.47
127 175 0.15
128 87 0.07
129 19 0.02
130 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.34
Consensus pattern (125 bp):
TGTCGGCTTTGACCTTGGAGACTTCCTCACCTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGACT
TCCTATCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTGCC
Found at i:30546 original size:84 final size:83
Alignment explanation
Indices: 30504--31579 Score: 934
Period size: 84 Copynumber: 12.8 Consensus size: 83
30494 TCCTTCAGTT
* * * *
30504 TGCCTATCGGCTTTGACCCTAGAGACTTTTCTACCCTTAGTCTGCCTGTTGACTTTGACCTT-GA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAG-
*
30568 AGACTACCTCATCTAAAGTC
65 AGACTGCCTCA-CTAAAGTC
* * * * * * * * *
30588 TGCCTGTCAGCTTTGACCCTAGAGACTTTCCTACCCTCAATCTACTTGTCGACTTTAACCCTAAA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAGA
*
30653 GACTGCCTTACTTAAAGTC
66 GACTGCCTCAC-TAAAGTC
*
30672 TG-CTGTCGGCTTTGACCCTAGAGAC-TTTCTTACCCT-AGTCTGCCTGTCGGCTTTGACCCTAG
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTC-TACCCTCAGTCTGCCTGTCGGCTTTGACCTTAG
30734 AGACTGCCTCATCTAAAGTC
65 AGACTGCCTCA-CTAAAGTC
* * * * * * * * ** *
30754 TTCCTATTGACTTTGACCTTAGAGTCTTTCCTACCCTCAATCTGGTTATCGGCTTTGACCTTAGA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAGA
*
30819 GACTGTCTCATCTAAAGTC
66 GACTGCCTCA-CTAAAGTC
* * * * * *
30838 TGCCTGTCGGCTTTGACCATAAAGACATTCCTACCCTCAGTC-ACCTATCGGCTTTGACCCTT-G
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGA-CCTTAG
* *
30901 AGACTACCTCATCTAAAGTT
65 AGACTGCCTCA-CTAAAGTC
* ** * * * * * * *
30921 TGCCTATTAGCTTTGACCTTGGAGACTTTCCTACCCTCAGTCTACTTGTCGACTTTGACCCTAGA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAGA
30986 GACTGCC-CTATCTAAAGTC
66 GACTGCCTC-A-CTAAAGTC
* * * * * * * *
31005 TGCCTATCGACTTTGACCTTGGAGACTTTTTTTCCCTCAGTTTGCCTATCGGCTTTGA-CTCTAG
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCT-TAG
* *
31069 AGACTGCCTCACTTCAAGTT
65 AGACTGCCTCAC-TAAAGTC
* * * * * *
31089 TGCTTGTCAGCTTTGACCTTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAGA
*
31154 GATTGCCTCATCTAAAGTC
66 GACTGCCTCA-CTAAAGTC
* * * * * * **
31173 TGCCAGTCGACTTTGACCTTGGAGAC-TTTCTTACCCTTCAGTTTACCTGTCAACTTTGACAC-T
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTC-TACCC-TCAGTCTGCCTGTCGGCTTTGAC-CTT
*
31236 AGAGACTGCCTTACTTAAAGTC
63 AGAGACTGCCTCAC-TAAAGTC
* * ** * * *
31258 TGCATATTAGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCTTGTCGGCTTTGACCCTGGA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAGA
*
31323 GACTGCCTCCCTTAAAGTC
66 GACTGCCTCAC-TAAAGTC
* * * *
31342 TGCCTGTCGGCTTTGACCCTAGAGA-TTTTCCTACTCTCAGTCTGCCTGTCAGTTTTGACCTTAA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTT-CTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAG
*
31406 AGACTGCCTCATCTAAAGTT
65 AGACTGCCTCA-CTAAAGTC
* * * * * * * * * * *
31426 TGCGTGTCAGCTTTGACCCTGGAGACTTTCCTACCTTTAGTGTACCTGTCAGCTTGGACCCTAGA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAGA
* *
31491 GACTACCTCATCTAAAGTT
66 GACTGCCTCA-CTAAAGTC
* * * * *
31510 TGCCTGTCGGCTTTAACCCTAGATA-TTTTCCTACCCTTAGTCTGCCTGTTGACTTTGACTCTTA
1 TGCCTGTCGGCTTTGACCCTAGAGACTTTT-CTACCCTCAGTCTGCCTGTCGGCTTTGAC-CTTA
31574 GAGACT
64 GAGACT
31580 TTCCTACCCT
Statistics
Matches: 807, Mismatches: 158, Indels: 53
0.79 0.16 0.05
Matches are distributed among these distances:
82 41 0.05
83 136 0.17
84 548 0.68
85 77 0.10
86 5 0.01
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.34
Consensus pattern (83 bp):
TGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTCAGTCTGCCTGTCGGCTTTGACCTTAGA
GACTGCCTCACTAAAGTC
Found at i:30691 original size:41 final size:43
Alignment explanation
Indices: 30035--31835 Score: 670
Period size: 42 Copynumber: 42.8 Consensus size: 43
30025 AAACCCTTAT
* * * * **
30035 CTAAAGTCGGCTTGTCAGCTTTGACCCTGGAGACTTTCTTACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
** * * *
30078 CTTCAGTCTGCCTGTCGGCTTTGATCCTAGAGATTGCCTCA-C
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* ** * **
30120 TTAAAGTCTGCCTGTCGGCTTTGACTTTTGAGACT-TTTCTACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCT-TACC
* * * * * * *
30163 CT-CAGTGTGCCTATCGGCTTTGACCTTGGAGACTGCCTCACT
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * **
30205 C-AAAGTCTACCTATCGGCTTTAACCCTAGACA-TTTC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * *
30245 TTCAA-TCTACCTGT-GGACTTTGACCCTAGAGACTACCTTA-T
1 CTAAAGTCTGCCTGTCGG-CTTTGACCCTAGAGACTGCCTTACC
* * * * * *
30286 TTAAAGTTTGCCTATCAGCTTTAACCCTAGAGACTTTCCTT--C
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
** ** * * * * *
30328 CTTCAGTCT-CCTTGTCAACTTTGACCTTGGAGACTACCTCA-T
1 CTAAAGTCTGCC-TGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * **
30370 CTAAAGTCTGTCTGTCGGCTTTGACCCAAGAGACT-TTTCTACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCT-TACC
* * * * * *
30413 CT-TAGTCTGCCTGTCGGCTTTGACCTTGGAGACTACCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* ** * * *
30454 CTAAAGTCTACCTGTCAACTTTGACCTTGGAGACTTTCCTT--C
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
** * * **
30496 CTTCAGTTTGCCTATCGGCTTTGACCCTAGAGACT-TTTCTACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCT-TACC
* * * * * * *
30539 CT-TAGTCTGCCTGTTGACTTTGA-CCTTGAAGACTACCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTGCCTTACC
* *
30580 CTAAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTTCC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
* * * * * *
30623 CTCAA-TCTACTTGTCGACTTTAACCCTAAAGACTGCCTTA-C
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* **
30664 TTAAAGTCTG-CTGTCGGCTTTGACCCTAGAGACTTTCTTACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* *
30706 CT--AGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * * * *
30746 CTAAAGTCTTCCTATTGACTTTGACCTTAGAGTCTTTCC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
* ** * * * * *
30789 CTCAA-TCTGGTTATCGGCTTTGACCTTAGAGACTGTCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * *
30830 CTAAAGTCTGCCTGTCGGCTTTGACCATAAAGACATTCC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
* * * * * * *
30873 CT-CAGTC-ACCTATCGGCTTTGACCCTTGAGACTACCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * ** * * *
30913 CTAAAGTTTGCCTATTAGCTTTGACCTTGGAGACTTTCC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
* * * * * *
30956 CT-CAGTCTACTTGTCGACTTTGACCCTAGAGACTGCCCTA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * *** *
30997 CTAAAGTCTGCCTATCGACTTTGACCTTGGAGACTTTTTTTCC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * *
31040 CT-CAGTTTGCCTATCGGCTTTGACTCTAGAGACTGCCTCA-C
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * * * * *
31081 TTCAAGTTTGCTTGTCAGCTTTGACCTTGGAGACTTTCC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
* * * *
31124 CT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGATTGCCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * **
31165 CTAAAGTCTGCCAGTCGACTTTGACCTTGGAGACTTTCTTACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
** * * ** *
31208 CTTCAGTTTACCTGTCAACTTTGACACTAGAGACTGCCTTA-C
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * ** **
31250 TTAAAGTCTGCATATTAGCTTTGACCCTAGAGACT-TTTCTACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCT-TACC
* * *
31293 CT-CAGTCTGCTTGTCGGCTTTGACCCTGGAGACTGCC-T-CC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * *
31333 CTTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGATTTTCC-TACT
1 C-TAAAGTCTGCCTGTCGGCTTTGACCCTAGAGA-CTGCCTTACC
* * * * * * *
31377 CT-CAGTCTGCCTGTCAGTTTTGACCTTAAAGACTGCCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * *
31418 CTAAAGTTTGCGTGTCAGCTTTGACCCTGGAGACTTTCC-TA-C
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
** * * * * * * *
31460 CTTTAGTGTACCTGTCAGCTTGGACCCTAGAGACTACCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * *
31502 CTAAAGTTTGCCTGTCGGCTTTAACCCTAGATATTTTCC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGA-CTGCCTTACC
* * * * *
31545 CT-TAGTCTGCCTGTTGACTTTGACTCTTAGAGACTTTCC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGAC-CCTAGAGAC-TGCCTTACC
** * * * * *
31588 CTTCAGTCTGCTTGTCAGCTTTGA-CCTCGGAGACTGCCTCA-T
1 CTAAAGTCTGCCTGTCGGCTTTGACCCT-AGAGACTGCCTTACC
* * * * *
31630 CAAAAGTCTGCTTGTCGACTTTGACCCTGGAGACTTTCC-TACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTACC
* * * * * *
31673 CTTCAA-TCTGCTTATCAGCTTTGACCCTTGAGACTGCCTCA-C
1 C-TAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * * * * * ***
31715 TTAAAGTTTACTTATCGACTTTGATCCTAAAGACTTTTTTACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
* * * * *
31758 CTTAAGTCTGCATGTCGGCTTTGACTCTGGAGACT-TCTTCACC
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTT-ACC
* * ** * *
31801 CTTAAGTTTGCCTACCGACTTTGACCCTGGAGACT
1 CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACT
31836 ACCTCGTCTT
Statistics
Matches: 1270, Mismatches: 408, Indels: 160
0.69 0.22 0.09
Matches are distributed among these distances:
39 2 0.00
40 40 0.03
41 143 0.11
42 824 0.65
43 241 0.19
44 20 0.02
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.34
Consensus pattern (43 bp):
CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTACC
Found at i:31683 original size:85 final size:86
Alignment explanation
Indices: 31548--31792 Score: 275
Period size: 85 Copynumber: 2.9 Consensus size: 86
31538 TCCTACCCTT
* * * *
31548 AGTCTGCCTGTTGACTTTGACTCTTAGAGACTTTCCTACCCTTCAGTCTGCTTGTCAGCTTTGAC
1 AGTCTGCTTGTCGACTTTGAC-CCTAGAGACTTTCCTACCCTTCAATCTGCTTGTCAGCTTTGAC
31613 CTC-GGAGACTGCCTCA-TCAAA
65 CTCTGGAGACTGCCTCACT-AAA
* *
31634 AGTCTGCTTGTCGACTTTGACCCTGGAGACTTTCCTACCCTTCAATCTGCTTATCAGCTTTGACC
1 AGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTACCCTTCAATCTGCTTGTCAGCTTTGACC
* *
31699 -CTTGAGACTGCCTCACTTAA
66 TCTGGAGACTGCCTCACTAAA
* * * * * ** * *
31719 AGTTTACTTATCGACTTTGATCCTAAAGACTTTTTTACCCTT-AAGTCTGCATGTCGGCTTTGA-
1 AGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTACCCTTCAA-TCTGCTTGTCAGCTTTGAC
31782 CTCTGGAGACT
65 CTCTGGAGACT
31793 TCTTCACCCT
Statistics
Matches: 135, Mismatches: 20, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
84 4 0.03
85 111 0.82
86 20 0.15
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.36
Consensus pattern (86 bp):
AGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTACCCTTCAATCTGCTTGTCAGCTTTGACC
TCTGGAGACTGCCTCACTAAA
Found at i:31955 original size:42 final size:43
Alignment explanation
Indices: 31908--32005 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 43
31898 TAAACATGGG
* * * *
31908 AGACTTCCTT-ATCCATCG-TCTACCCATCGGCTTAGTCTCGAA
1 AGACTTCCTTCATCAATCGAT-TACCCATCAGCTCAGACTCGAA
* *
31950 AGACTTTCTTCATCAATCGATTGCCCATCAGCTCAGACTCGAA
1 AGACTTCCTTCATCAATCGATTACCCATCAGCTCAGACTCGAA
*
31993 AAACTT-CTTCATC
1 AGACTTCCTTCATC
32006 TTTTCTTTCT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 16 0.34
43 30 0.64
44 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.31
Consensus pattern (43 bp):
AGACTTCCTTCATCAATCGATTACCCATCAGCTCAGACTCGAA
Found at i:32321 original size:42 final size:44
Alignment explanation
Indices: 32197--32348 Score: 139
Period size: 42 Copynumber: 3.5 Consensus size: 44
32187 GTTGGCTTTA
* * * ** *
32197 TCCCCAGTCAACCTTTCTTA-CCTTTGGTGACCTATTGGCTTTG
1 TCCCCGGTCAAACTTTCTTACCCCTTGGTGACCTATCAGCTATG
* * * * * * *
32240 TCCCCGATCAACCATTCTTACCCTTTGTTTACCTGTCAGCTATG
1 TCCCCGGTCAAACTTTCTTACCCCTTGGTGACCTATCAGCTATG
* *
32284 TCCCTGGT-AAAC-TTCTTACCCCTTGGTGACCTATCAGCTTTG
1 TCCCCGGTCAAACTTTCTTACCCCTTGGTGACCTATCAGCTATG
*
32326 TCCCCGGTCAACCTTTCTTACCC
1 TCCCCGGTCAAACTTTCTTACCC
32349 TTTGTTTACA
Statistics
Matches: 87, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
42 32 0.37
43 23 0.26
44 32 0.37
ACGTcount: A:0.16, C:0.34, G:0.14, T:0.36
Consensus pattern (44 bp):
TCCCCGGTCAAACTTTCTTACCCCTTGGTGACCTATCAGCTATG
Found at i:32374 original size:44 final size:44
Alignment explanation
Indices: 32186--32460 Score: 206
Period size: 44 Copynumber: 6.4 Consensus size: 44
32176 TTTATTAACT
* * *
32186 TGTTGGCTTTATCCCCAGTCAACCTTTCTTA-CCTTTGGTGACC
1 TGTTGACTTTGTCCCCGGTCAACCTTTCTTACCCTTTGGTGACC
* * * * * *
32229 TATTGGCTTTGTCCCCGATCAACCATTCTTACCCTTTGTTTACC
1 TGTTGACTTTGTCCCCGGTCAACCTTTCTTACCCTTTGGTGACC
* * * * *
32273 TG-TCAGCTATGTCCCTGGT-AAAC-TTCTTACCCCTTGGTGACC
1 TGTTGA-CTTTGTCCCCGGTCAACCTTTCTTACCCTTTGGTGACC
* * * * *
32315 T-ATCAGCTTTGTCCCCGGTCAACCTTTCTTACCCTTTGTTTACA
1 TGTTGA-CTTTGTCCCCGGTCAACCTTTCTTACCCTTTGGTGACC
* * * *
32359 TGTTGACTATATCCCCGGT-AAACTTT-TT-CTCTATTGGTGACC
1 TGTTGACTTTGTCCCCGGTCAACCTTTCTTACCCT-TTGGTGACC
* * * **
32401 TGTCGACTTTGTCCCCGGTCAACCTTTTTTACCCTTTGTTTCCC
1 TGTTGACTTTGTCCCCGGTCAACCTTTCTTACCCTTTGGTGACC
*
32445 TGTTGACTATGTCCCC
1 TGTTGACTTTGTCCCC
32461 AGTAAATTTC
Statistics
Matches: 179, Mismatches: 43, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
41 3 0.02
42 56 0.31
43 45 0.25
44 70 0.39
45 5 0.03
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.40
Consensus pattern (44 bp):
TGTTGACTTTGTCCCCGGTCAACCTTTCTTACCCTTTGGTGACC
Found at i:32489 original size:86 final size:86
Alignment explanation
Indices: 32235--32496 Score: 318
Period size: 86 Copynumber: 3.0 Consensus size: 86
32225 GACCTATTGG
* * * * *
32235 CTTTGTCCCCGATCAACCATTCTTACCCTTTGTTTACCTG-TCAGCTATGTCCCTGGTAAACTTC
1 CTTTGTCCCCGGTCAACCTTTCTTACCCTTTGTTTACCTGTTGA-CTATGTCCCCGGTAAATTTC
* * *
32299 TTACCCCTTGGTGACCTATC-A
65 TTACTCCTAGGTGACCTGTCGA
* *
32320 GCTTTGTCCCCGGTCAACCTTTCTTACCCTTTGTTTACATGTTGACTATATCCCCGGTAAACTTT
1 -CTTTGTCCCCGGTCAACCTTTCTTACCCTTTGTTTACCTGTTGACTATGTCCCCGGTAAA-TTT
32385 -TT-CT-CTATTGGTGACCTGTCGA
64 CTTACTCCTA--GGTGACCTGTCGA
* * *
32407 CTTTGTCCCCGGTCAACCTTTTTTACCCTTTGTTTCCCTGTTGACTATGTCCCCAGTAAATTTCT
1 CTTTGTCCCCGGTCAACCTTTCTTACCCTTTGTTTACCTGTTGACTATGTCCCCGGTAAATTTCT
*
32472 TACTCCTAGGTGGCCTGTCGA
66 TACTCCTAGGTGACCTGTCGA
32493 CTTT
1 CTTT
32497 ATCTCCGGGT
Statistics
Matches: 152, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
84 2 0.01
85 4 0.03
86 136 0.89
87 7 0.05
88 3 0.02
ACGTcount: A:0.16, C:0.30, G:0.15, T:0.39
Consensus pattern (86 bp):
CTTTGTCCCCGGTCAACCTTTCTTACCCTTTGTTTACCTGTTGACTATGTCCCCGGTAAATTTCT
TACTCCTAGGTGACCTGTCGA
Found at i:33078 original size:17 final size:17
Alignment explanation
Indices: 33058--33103 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
33048 GGAAAATTCA
33058 AAAAAATAAAAAATAAT
1 AAAAAATAAAAAATAAT
* *
33075 AAAAAAT-CAAAATTAT
1 AAAAAATAAAAAATAAT
*
33091 CAAAAATAAAAAA
1 AAAAAATAAAAAA
33104 ATTCTTCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAAAATAAAAAATAAT
Found at i:33085 original size:26 final size:25
Alignment explanation
Indices: 33050--33104 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
33040 ATTTGTTTGG
*
33050 AAAATTCAAAAAAATAAAAAATAATA
1 AAAAATCAAAAAAATAAAAAATAA-A
** *
33076 AAAAATCAAAATTATCAAAAATAAA
1 AAAAATCAAAAAAATAAAAAATAAA
33101 AAAA
1 AAAA
33105 TTCTTCAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.18
Consensus pattern (25 bp):
AAAAATCAAAAAAATAAAAAATAAA
Found at i:33191 original size:20 final size:20
Alignment explanation
Indices: 33166--33230 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
33156 TAAAGTTGTG
*
33166 AAAGCATGAAATGAAGATGC
1 AAAGCATGAAATGATGATGC
*
33186 AAAGCATGAAA-GTTG-TG-
1 AAAGCATGAAATGATGATGC
33203 AAAGCATGAAATGATGATGC
1 AAAGCATGAAATGATGATGC
33223 AAAGCATG
1 AAAGCATG
33231 TAACGTGGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
17 11 0.28
18 5 0.13
19 4 0.10
20 19 0.49
ACGTcount: A:0.46, C:0.09, G:0.26, T:0.18
Consensus pattern (20 bp):
AAAGCATGAAATGATGATGC
Found at i:33199 original size:37 final size:37
Alignment explanation
Indices: 33157--33230 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
33147 TGAATAAATT
33157 AAAGTTGTGAAAGCATGAAATGAAGATGCAAAGCATG
1 AAAGTTGTGAAAGCATGAAATGAAGATGCAAAGCATG
*
33194 AAAGTTGTGAAAGCATGAAATGATGATGCAAAGCATG
1 AAAGTTGTGAAAGCATGAAATGAAGATGCAAAGCATG
33231 TAACGTGGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.45, C:0.08, G:0.27, T:0.20
Consensus pattern (37 bp):
AAAGTTGTGAAAGCATGAAATGAAGATGCAAAGCATG
Found at i:35614 original size:13 final size:13
Alignment explanation
Indices: 35596--35621 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35586 ACATTTTGGG
35596 ATGTATCGATACA
1 ATGTATCGATACA
35609 ATGTATCGATACA
1 ATGTATCGATACA
35622 TATTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:35616 original size:33 final size:32
Alignment explanation
Indices: 35574--35641 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
35564 CGTTACAAGC
*
35574 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATATTGGG-TGTATCGATA
*
35607 CAATGTATCGATACATATTGTGTGTATCGATA
1 CAATGTATCGATACATATTGGGTGTATCGATA
35639 CAA
1 CAA
35642 ATTTGGCTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATATTGGGTGTATCGATA
Found at i:36338 original size:22 final size:22
Alignment explanation
Indices: 36295--36339 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
36285 TTTTCTTTTC
* *
36295 TCTCCCCCTTAATTAGAAAATT
1 TCTCCCCCTTAAGTAAAAAATT
36317 TCTCCCCCTT-AGTAAAATAATT
1 TCTCCCCCTTAAGTAAAA-AATT
36339 T
1 T
36340 AGCACTTTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTCCCCCTTAAGTAAAAAATT
Found at i:38038 original size:20 final size:21
Alignment explanation
Indices: 38009--38049 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
37999 TGTTTTTGTT
38009 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
38028 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
38050 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:38361 original size:8 final size:8
Alignment explanation
Indices: 38348--38373 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
38338 AACATCATTC
38348 ATCACAAA
1 ATCACAAA
38356 ATCACAAA
1 ATCACAAA
38364 ATCACAAA
1 ATCACAAA
38372 AT
1 AT
38374 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:44327 original size:19 final size:20
Alignment explanation
Indices: 44282--44337 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
44272 TTACAAGCCA
* *
44282 ATGTATCAATACATTTTGGG
1 ATGTATCGATACATATTGGG
*
44302 ATGTATCGATACATATTGTG
1 ATGTATCGATACATATTGGG
44322 -TGTATCGATACATATT
1 ATGTATCGATACATATT
44338 TGGCTACTGC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATATTGGG
Found at i:47665 original size:19 final size:20
Alignment explanation
Indices: 47622--47672 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
47612 TACAAGCCAA
**
47622 TGTATCGATACATTTTATGG
1 TGTATCGATACATACTATGG
47642 TGTATCGATACATACTAT-G
1 TGTATCGATACATACTATGG
47661 TGTATCGATACA
1 TGTATCGATACA
47673 AGTTTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATACTATGG
Found at i:47769 original size:20 final size:20
Alignment explanation
Indices: 47727--47776 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
47717 TCTTTTTCAA
*
47727 GTATCGATACAATGCAACAT
1 GTATCGATACAATGAAACAT
* **
47747 GTATCGATACAATTAAATGT
1 GTATCGATACAATGAAACAT
47767 GTATCGATAC
1 GTATCGATAC
47777 TTTTTAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACAATGAAACAT
Found at i:48399 original size:35 final size:34
Alignment explanation
Indices: 48353--48441 Score: 99
Period size: 35 Copynumber: 2.5 Consensus size: 34
48343 AATTCGCGCA
*
48353 TTCTCCCCCTTAAT-TAATCATAAGCACTTATCTCT
1 TTCTCCCCCTTAATAAAAT-ATAA-CACTTATCTCT
* * *
48388 TTCTCCTCCTTAATCAAAATTTTACACTTATCTCT
1 TTCTCCCCCTTAAT-AAAATATAACACTTATCTCT
48423 TTCTCCCCCTTAATCAAAA
1 TTCTCCCCCTTAAT-AAAA
48442 ATTTATTTGC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
35 42 0.89
36 2 0.04
37 3 0.06
ACGTcount: A:0.27, C:0.31, G:0.01, T:0.40
Consensus pattern (34 bp):
TTCTCCCCCTTAATAAAATATAACACTTATCTCT
Found at i:50271 original size:13 final size:13
Alignment explanation
Indices: 50233--50271 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
50223 ATAATCCCCC
*
50233 TGTATCGATACAC
1 TGTATCGATACAA
*
50246 TGTATAGATACAA
1 TGTATCGATACAA
50259 TGTATCGATACAA
1 TGTATCGATACAA
50272 AGAATGCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:56474 original size:13 final size:13
Alignment explanation
Indices: 56456--56480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56446 CATTTTATGG
56456 TGTATCGATACAA
1 TGTATCGATACAA
56469 TGTATCGATACA
1 TGTATCGATACA
56481 TACTATGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:56496 original size:32 final size:33
Alignment explanation
Indices: 56433--56500 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
56423 CATTATAAGC
**
56433 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
56466 CAATGTATCGATACATACTAT-GTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
56498 CAA
1 CAA
56501 GTTTAGCTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 14 0.42
33 19 0.58
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATACTATGGTGTATCGATA
Found at i:56579 original size:20 final size:20
Alignment explanation
Indices: 56554--56603 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
56544 TCTTTTTCAA
*
56554 GTATCGATACAATGCAACGT
1 GTATCGATACAATGAAACGT
* *
56574 GTATCGATACAATTAAATGT
1 GTATCGATACAATGAAACGT
56594 GTATCGATAC
1 GTATCGATAC
56604 TTTTCAGGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (20 bp):
GTATCGATACAATGAAACGT
Found at i:63127 original size:6 final size:6
Alignment explanation
Indices: 63118--63178 Score: 54
Period size: 6 Copynumber: 10.0 Consensus size: 6
63108 TTTATGGTTA
* *
63118 TTAATT TTAATT TTAATT TTAATT TTGGATTT TTTATT TT-ATT TT-ATT
1 TTAATT TTAATT TTAATT TTAATT TT--AATT TTAATT TTAATT TTAATT
*
63166 TTATTT TCTAATT
1 TTAATT T-TAATT
63179 AGTTTCATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
5 10 0.22
6 27 0.59
7 4 0.09
8 5 0.11
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (6 bp):
TTAATT
Found at i:69910 original size:155 final size:155
Alignment explanation
Indices: 69519--69972 Score: 452
Period size: 154 Copynumber: 2.9 Consensus size: 155
69509 GCTCAGTGAT
* * *
69519 CCTAGAAGACTTAAAAAGGATTATAAATGGGATGAACTTATCCTAAATACCCACTTTCAACATAA
1 CCTAAAAGACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACTTTTAACATAA
* ** ** * * * * * *
69584 AAGTGAACCCAATGACAACTTAGCACTCGGTTCT-AGAGAATTAC-AAAACTACCTTTAAGGGAT
66 AAGCGAATTCGGTGACAACATAGGACTCGATTCTAAGAAAATTACAAAAAC-ACC-CTAAGAGAT
* * **
69647 ACCTTTGACTTAGAAGCGCTTGATACC
129 ACCTTTAACTTAGAAGCACCCGATACC
* * * * * * *
69674 TCTAAAAGACTTAAAAAGGATT-TAGATTGGATGAGCCTATCCTAAATACCCACCTTCAGCATAA
1 CCTAAAAGACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACTTTTAACATAA
* * * * *
69738 AAGTGGACTT-GGTGACAACCTAGGACTTGATTCTAAAAAAATTACAAAAACACCCTAAGAGATA
66 AAG-CGAATTCGGTGACAACATAGGACTCGATTCTAAGAAAATTACAAAAACACCCTAAGAGATA
* *
69802 CCTTAAACTTAGAAGTACCCGATACC
130 CCTTTAACTTAGAAGCACCCGATACC
* *
69828 CCTAAAGGACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACTTTTGACATAA
1 CCTAAAAGACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACTTTTAACATAA
* * * * * *
69893 AAGCAAATTCGGTGACAACATAAGACTCAACTT-TAAGAAAATTATGAAAATGC-CCCTAGGAGA
66 AAGCGAATTCGGTGACAACATAGGACTCGA-TTCTAAGAAAATTA-CAAAA-ACACCCTAAGAGA
69956 TACCTTTAACTTAGAAG
128 TACCTTTAACTTAGAAG
69973 GGCCTGGTAA
Statistics
Matches: 242, Mismatches: 49, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
154 108 0.45
155 97 0.40
156 36 0.15
157 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (155 bp):
CCTAAAAGACTTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACTTTTAACATAA
AAGCGAATTCGGTGACAACATAGGACTCGATTCTAAGAAAATTACAAAAACACCCTAAGAGATAC
CTTTAACTTAGAAGCACCCGATACC
Found at i:70369 original size:165 final size:164
Alignment explanation
Indices: 70079--70421 Score: 458
Period size: 165 Copynumber: 2.1 Consensus size: 164
70069 AAAAAAATTA
* * * *
70079 AGTCCCTAAATTTTTGAAATTACATTTCATACCCACAAAAAACCAGGATGATACAAAAAGTTTTG
1 AGTCCCTAAACTTTTGAAATTACATTTCATACCAACAAAAAACCAGGAGGATACAAAAAGTTTTA
* * *
70144 AAAATTTCTATGCCCCTACGGAAGGCTATAGGAATAATAAAAATTTTAAGAAAATGACTAAGATG
66 AAAATTTCTATACCCCTACGGAAGGCCATAGGAATAATAAAAATTTAAAGAAAATGACTAAGATG
*
70209 ATAATTTTT-CTTCTAAAAACC-AAATTTGTTATTT
131 ATAATTTTTCCTT-T-AAAACCTAAATTTGCTATTT
** * *
70243 AGTCCCTAAACTTTTGAAATTACATTTTGTACCTAACGAAAAA-CTGAGAGGATACAAAAAGTTT
1 AGTCCCTAAACTTTTGAAATTACATTTCATACC-AACAAAAAACCAG-GAGGATACAAAAAGTTT
* * * *
70307 TAAAAATTTCTATACCCCTATGGAAGGCCATAGGAATAATAAAGATTTAAAGAAATTGACTAAGG
64 TAAAAATTTCTATACCCCTACGGAAGGCCATAGGAATAATAAAAATTTAAAGAAAATGACTAAGA
* *
70372 TGATGATTTTTCCTTTAAAGCCTAAATTTGCTATTT
129 TGATAATTTTTCCTTTAAAACCTAAATTTGCTATTT
*
70408 AATCCCTAAACTTT
1 AGTCCCTAAACTTT
70422 CTAAAGAATT
Statistics
Matches: 156, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
164 37 0.24
165 116 0.74
166 3 0.02
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.33
Consensus pattern (164 bp):
AGTCCCTAAACTTTTGAAATTACATTTCATACCAACAAAAAACCAGGAGGATACAAAAAGTTTTA
AAAATTTCTATACCCCTACGGAAGGCCATAGGAATAATAAAAATTTAAAGAAAATGACTAAGATG
ATAATTTTTCCTTTAAAACCTAAATTTGCTATTT
Found at i:71655 original size:27 final size:27
Alignment explanation
Indices: 71625--71678 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
71615 GATTTAATTA
71625 ATTAAAAAGAAAAGA-ATAATTAAAAAT
1 ATTAAAAAGAAAA-ATATAATTAAAAAT
* * *
71652 ATTAATAATAAAAATTTAATTAAAAAT
1 ATTAAAAAGAAAAATATAATTAAAAAT
71679 TTATATGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (27 bp):
ATTAAAAAGAAAAATATAATTAAAAAT
Found at i:71677 original size:12 final size:12
Alignment explanation
Indices: 71641--71681 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
71631 AAGAAAAGAA
71641 TAATTAAAAATAT
1 TAATTAAAAAT-T
71654 TAATAATAAAAATT
1 TAAT--TAAAAATT
71668 TAATTAAAAATT
1 TAATTAAAAATT
71680 TA
1 TA
71682 TATGTCAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 10 0.38
13 4 0.15
14 5 0.19
15 7 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
TAATTAAAAATT
Found at i:72933 original size:13 final size:13
Alignment explanation
Indices: 72915--72939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72905 TTTGGGACAA
72915 TGTATCGATACAT
1 TGTATCGATACAT
72928 TGTATCGATACA
1 TGTATCGATACA
72940 AATTGTGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:74167 original size:20 final size:20
Alignment explanation
Indices: 74142--74195 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
74132 GTTAGAAGCA
*
74142 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
*
74162 ATGTATCAATACAATGTACC
1 ATGTATCGATACAATGTACC
74182 ATGTATCGATACAA
1 ATGTATCGATACAA
74196 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:74249 original size:20 final size:20
Alignment explanation
Indices: 74224--74281 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 20
74214 CAGCCAGTTT
*
74224 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGTA
*
74244 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGTA
74263 CATGTATCGATAC-ATTGTA
1 CATGTATCGATACAATTGTA
74282 TCGATACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.03
19 18 0.53
20 15 0.44
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGTA
Found at i:74283 original size:13 final size:13
Alignment explanation
Indices: 74265--74289 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74255 ACAATGAACA
74265 TGTATCGATACAT
1 TGTATCGATACAT
74278 TGTATCGATACA
1 TGTATCGATACA
74290 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:74309 original size:33 final size:32
Alignment explanation
Indices: 74246--74310 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
74236 CAATTGTCCA
* *
74246 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATGTATCAATACAT
74278 TGTATCGATACAAAGCATA-ATGTATCAATACAT
1 TGTATCGATACAAAG-A-ACATGTATCAATACAT
74311 CTGGGTGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 14 0.48
33 14 0.48
34 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCAATACAT
Found at i:82974 original size:20 final size:20
Alignment explanation
Indices: 82932--82982 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
82922 GTTAGAAGCA
* *
82932 ATGTATTGATACAATTCATC
1 ATGTATCGATACAATTCACC
82952 ATGTATCGATACAATGT-ACC
1 ATGTATCGATACAAT-TCACC
82972 ATGTATCGATA
1 ATGTATCGATA
82983 TAAACAGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATTCACC
Found at i:85490 original size:13 final size:13
Alignment explanation
Indices: 85472--85519 Score: 78
Period size: 13 Copynumber: 3.7 Consensus size: 13
85462 TAACTCATGG
85472 ATCGATACATTGT
1 ATCGATACATTGT
*
85485 ATCGATACATTAT
1 ATCGATACATTGT
*
85498 ATCGATACAATGT
1 ATCGATACATTGT
85511 ATCGATACA
1 ATCGATACA
85520 AAGAACATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (13 bp):
ATCGATACATTGT
Found at i:92102 original size:166 final size:163
Alignment explanation
Indices: 91806--92143 Score: 382
Period size: 167 Copynumber: 2.0 Consensus size: 163
91796 ATTTAATACC
* *
91806 AATATTAGATGAATTTTAAAAATTTTAAACCAAGAAAATCTCCCAAAAATATTTATGGAATAAAA
1 AATATTTGACGAATTTTAAAAATTTTAAACCAAGAAAATCTCCCAAAAATATTTATGGAATAAAA
* *
91871 AACTCAATTTTTCAGAAACAGAAGAATTTCAAGGAAAAAATGAAAAACTCATAAAAATAAATGAA
66 AACTCAATTTTT-AGAAACAGAAGAATTCCAA-GAAAAAATAAAAAACTCATAAAAATAAATGAA
* * *
91936 -TTTTTCAAAACTGATTAAATGGTAATTAGATAAT
129 TTTTTTCAAAACAGATTAAATGGTAACTAAATAAT
* *
91970 AATATTTGACGAATTTTAAAAATTTTAATCTAATGAAAATACTCCCGAAAAA-ATTTATGGAGA-
1 AATATTTGACGAATTTTAAAAATTTTAAACCAA-GAAAAT-CTCCC-AAAAATATTTATGGA-AT
*** * * * *
92033 AAAAAACTTTGTATTTT-GAAAGTAGAAAGAATTCCAA-AAGAAAATAAAAAATTCATGGAACA-
62 AAAAAACTCAAT-TTTTAGAAA-CAG-AAGAATTCCAAGAA-AAAATAAAAAACTCAT-AAAAAT
*
92095 AAATGAATTTTTTCAAAACAGATTTAATGGTAACTAAATAAT
122 AAATGAATTTTTTCAAAACAGATTAAATGGTAACTAAATAAT
92137 AATATTT
1 AATATTT
92144 AAATAATTTG
Statistics
Matches: 147, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
164 29 0.20
165 12 0.08
166 46 0.31
167 60 0.41
ACGTcount: A:0.51, C:0.09, G:0.10, T:0.30
Consensus pattern (163 bp):
AATATTTGACGAATTTTAAAAATTTTAAACCAAGAAAATCTCCCAAAAATATTTATGGAATAAAA
AACTCAATTTTTAGAAACAGAAGAATTCCAAGAAAAAATAAAAAACTCATAAAAATAAATGAATT
TTTTCAAAACAGATTAAATGGTAACTAAATAAT
Found at i:93721 original size:25 final size:25
Alignment explanation
Indices: 93687--93740 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
93677 AATCAACATC
93687 AAGCAAGGAATTTCATATGGAATTT
1 AAGCAAGGAATTTCATATGGAATTT
*
93712 AAGCAAGGAATTTCGTATGGAATTT
1 AAGCAAGGAATTTCATATGGAATTT
93737 AAGC
1 AAGC
93741 TATGAAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (25 bp):
AAGCAAGGAATTTCATATGGAATTT
Found at i:95601 original size:28 final size:28
Alignment explanation
Indices: 95561--95617 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
95551 CATGTATAAA
*
95561 AAATGTATAATTTTCATGCTACAAGAAG
1 AAATGTATAATTTTCAAGCTACAAGAAG
95589 AAATGTATAATTTTCAAGCTACAAGAAG
1 AAATGTATAATTTTCAAGCTACAAGAAG
95617 A
1 A
95618 TCAGTGGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.30
Consensus pattern (28 bp):
AAATGTATAATTTTCAAGCTACAAGAAG
Found at i:99075 original size:103 final size:105
Alignment explanation
Indices: 98923--99111 Score: 249
Period size: 103 Copynumber: 1.8 Consensus size: 105
98913 GGTAATATAT
* *
98923 ATTTATTGCCTTCATTTAATATTAATGAAATTTTAGCATACTTGTAACACTTT-TATAAATGCT-
1 ATTTATTGCCTTCATTTAATATTAATGAAATTTAAGCATACTTGCAACACTTTCTATAAATGCTG
98986 AGATACTTGCACAACCATTTTGATTTCAATGGTAAAGTGC
66 AGATACTTGCACAACCATTTTGATTTCAATGGTAAAGTGC
** * * * * *
99026 ATTTATTGCCTTCATTTAATATTGGT-TAATTTGAAGGATGCTTGCAACACTTTCTATCAATGTT
1 ATTTATTGCCTTCATTTAATATTAATGAAATTT-AAGCATACTTGCAACACTTTCTATAAATGCT
* *
99090 GAGATACTTTCATAACCATTTT
65 GAGATACTTGCACAACCATTTT
99112 TCATTACAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
102 5 0.07
103 40 0.56
104 8 0.11
105 19 0.26
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (105 bp):
ATTTATTGCCTTCATTTAATATTAATGAAATTTAAGCATACTTGCAACACTTTCTATAAATGCTG
AGATACTTGCACAACCATTTTGATTTCAATGGTAAAGTGC
Found at i:107681 original size:13 final size:13
Alignment explanation
Indices: 107663--107689 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
107653 ACAATATTCC
107663 TTGTATCGATACA
1 TTGTATCGATACA
107676 TTGTATCGATACA
1 TTGTATCGATACA
107689 T
1 T
107690 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:111242 original size:13 final size:13
Alignment explanation
Indices: 111220--111309 Score: 63
Period size: 13 Copynumber: 6.0 Consensus size: 13
111210 GGCAGTAGCT
*
111220 TTGTAGCGATACA
1 TTGTATCGATACA
111233 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
111249 CTTATGTATCGATACA
1 --T-TGTATCGATACA
111265 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
111281 CTTATGTATCGATACA
1 --T-TGTATCGATACA
111297 TTGTATCGATACA
1 TTGTATCGATACA
111310 ACACTTATGT
Statistics
Matches: 64, Mismatches: 1, Indels: 24
0.72 0.01 0.27
Matches are distributed among these distances:
13 30 0.47
14 2 0.03
16 12 0.19
18 2 0.03
19 18 0.28
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:111258 original size:19 final size:19
Alignment explanation
Indices: 111234--111328 Score: 106
Period size: 19 Copynumber: 5.6 Consensus size: 19
111224 AGCGATACAT
111234 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
111253 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
111266 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
111285 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
111298 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
111317 TGTATCGATACA
1 TGTATCGATACA
111329 GTTACTGTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 18 0.28
14 2 0.03
16 12 0.19
18 2 0.03
19 30 0.47
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:111267 original size:32 final size:32
Alignment explanation
Indices: 111221--111328 Score: 207
Period size: 32 Copynumber: 3.4 Consensus size: 32
111211 GCAGTAGCTT
*
111221 TGTAGCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
111253 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
111285 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
111317 TGTATCGATACA
1 TGTATCGATACA
111329 GTTACTGTTT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 75 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:113355 original size:13 final size:13
Alignment explanation
Indices: 113337--113363 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
113327 ACATTATGCT
113337 TTGTATCGATACA
1 TTGTATCGATACA
113350 TTGTATCGATACA
1 TTGTATCGATACA
113363 T
1 T
113364 GGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:117193 original size:20 final size:20
Alignment explanation
Indices: 117168--117236 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
117158 CTGGCAAGGA
117168 AATGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
117188 AATGTATCGATAC---A-T-
1 AATGTATCGATACATTATTC
117203 --TGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
117221 AATGTATCGATACATT
1 AATGTATCGATACATT
117237 GTATCGATAC
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.26
16 2 0.05
17 2 0.05
20 27 0.64
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTATTC
Found at i:117208 original size:13 final size:13
Alignment explanation
Indices: 117190--117250 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 13
117180 CATTATTCAA
117190 TGTATCGATACAT
1 TGTATCGATACAT
117203 TGTATCGATACA-
1 TGTATCGATACAT
*
117215 T-TAT---T-CAA
1 TGTATCGATACAT
117223 TGTATCGATACAT
1 TGTATCGATACAT
117236 TGTATCGATACAT
1 TGTATCGATACAT
117249 TG
1 TG
117251 ATCTTTGTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
7 2 0.05
8 2 0.05
9 3 0.07
11 3 0.07
12 2 0.05
13 29 0.71
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:117212 original size:33 final size:33
Alignment explanation
Indices: 117170--117268 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
117160 GGCAAGGAAA
117170 TGTATCGATACATTATTCAATGTATCGATACAT
1 TGTATCGATACATTATTCAATGTATCGATACAT
117203 TGTATCGATACATTATTCAATGTATCGATACAT
1 TGTATCGATACATTATTCAATGTATCGATACAT
**
117236 TGTATCGATACATTGA-TCTTTGTATCGATACAT
1 TGTATCGATACATT-ATTCAATGTATCGATACAT
117269 CTAGGAATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
33 62 0.98
34 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATTATTCAATGTATCGATACAT
Found at i:121138 original size:52 final size:52
Alignment explanation
Indices: 121060--121188 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
121050 CAAAATATGA
*
121060 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
* * *
121112 AAATTTGCTTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
*
121164 AAATTTGCCTACATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
121189 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
Found at i:121215 original size:13 final size:13
Alignment explanation
Indices: 121197--121221 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121187 CAAAGATCAG
121197 TGTATCAATACAA
1 TGTATCAATACAA
121210 TGTATCAATACA
1 TGTATCAATACA
121222 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
TGTATCAATACAA
Found at i:121299 original size:33 final size:33
Alignment explanation
Indices: 121262--121328 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
121252 AGTAGCTTAA
121262 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
121295 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
121328 A
1 A
121329 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:121302 original size:13 final size:13
Alignment explanation
Indices: 121284--121308 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121274 CAAAAAAATA
121284 TGTATCGATACAT
1 TGTATCGATACAT
121297 TGTATCGATACA
1 TGTATCGATACA
121309 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:122248 original size:33 final size:32
Alignment explanation
Indices: 122206--122273 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
122196 CGTTACAAGC
*
122206 CAATGTATCGATACATTTTGGCATGTATCAATA
1 CAATGTATCGATACATATTGG-ATGTATCAATA
* *
122239 CAATGTATCGATACATATTGGGTGTATCGATA
1 CAATGTATCGATACATATTGGATGTATCAATA
122271 CAA
1 CAA
122274 AGAGTTAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (32 bp):
CAATGTATCGATACATATTGGATGTATCAATA
Found at i:122361 original size:20 final size:21
Alignment explanation
Indices: 122311--122366 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
122301 ACTGCCAATG
*
122311 ACATGTATCGATACATTCTTT
1 ACATGTATCGATACATTCTGT
*
122332 ACAAGTATCGATACATT-TGGT
1 ACATGTATCGATACATTCT-GT
122353 -CATGTATCGATACA
1 ACATGTATCGATACA
122367 ATGTATCGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ACATGTATCGATACATTCTGT
Found at i:122372 original size:13 final size:13
Alignment explanation
Indices: 122354--122378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
122344 ACATTTGGTC
122354 ATGTATCGATACA
1 ATGTATCGATACA
122367 ATGTATCGATAC
1 ATGTATCGATAC
122379 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:124859 original size:13 final size:13
Alignment explanation
Indices: 124841--124877 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
124831 AAACCCTTTG
*
124841 TATCGATACACTA
1 TATCGATACAATA
*
124854 TATCGATACAATG
1 TATCGATACAATA
124867 TATCGATACAA
1 TATCGATACAA
124878 AGAATGCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:131087 original size:32 final size:33
Alignment explanation
Indices: 131023--131090 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
131013 CGTTACAAGC
* *
131023 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCAATACATATTGGGATGTATCGATA
131056 CAATGTATCAATACATATTGGG-TGTATCGATA
1 CAATGTATCAATACATATTGGGATGTATCGATA
131088 CAA
1 CAA
131091 AGAGTTAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (33 bp):
CAATGTATCAATACATATTGGGATGTATCGATA
Found at i:131178 original size:20 final size:21
Alignment explanation
Indices: 131128--131183 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
131118 ACTGCCAATG
**
131128 ACATGTATCGATACATTTTTT
1 ACATGTATCGATACATTTGGT
*
131149 ACAAGTATCGATACATTTGGT
1 ACATGTATCGATACATTTGGT
131170 -CATGTATCGATACA
1 ACATGTATCGATACA
131184 ATGTATCGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (21 bp):
ACATGTATCGATACATTTGGT
Found at i:131189 original size:13 final size:13
Alignment explanation
Indices: 131171--131195 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
131161 ACATTTGGTC
131171 ATGTATCGATACA
1 ATGTATCGATACA
131184 ATGTATCGATAC
1 ATGTATCGATAC
131196 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:141907 original size:20 final size:20
Alignment explanation
Indices: 141882--141955 Score: 139
Period size: 20 Copynumber: 3.7 Consensus size: 20
141872 AAATTCCCAG
*
141882 ATGTATCAATACAAAGATCA
1 ATGTATCGATACAAAGATCA
141902 ATGTATCGATACAAAGATCA
1 ATGTATCGATACAAAGATCA
141922 ATGTATCGATACAAAGATCA
1 ATGTATCGATACAAAGATCA
141942 ATGTATCGATACAA
1 ATGTATCGATACAA
141956 TGTATCAATA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.26
Consensus pattern (20 bp):
ATGTATCGATACAAAGATCA
Found at i:141937 original size:40 final size:41
Alignment explanation
Indices: 141882--141964 Score: 141
Period size: 40 Copynumber: 2.0 Consensus size: 41
141872 AAATTCCCAG
141882 ATGTATCAATACAAAGATCAATGTATCGATACAAAG-ATCA
1 ATGTATCAATACAAAGATCAATGTATCGATACAAAGTATCA
* *
141922 ATGTATCGATACAAAGATCAATGTATCGATACAATGTATCA
1 ATGTATCAATACAAAGATCAATGTATCGATACAAAGTATCA
141963 AT
1 AT
141965 ACATTGAGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 34 0.85
41 6 0.15
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (41 bp):
ATGTATCAATACAAAGATCAATGTATCGATACAAAGTATCA
Found at i:142965 original size:49 final size:49
Alignment explanation
Indices: 142909--143651 Score: 564
Period size: 49 Copynumber: 15.9 Consensus size: 49
142899 ATGTTAAAGA
*
142909 TGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
142958 TGCCAATATGCTTATTCAAGGCCAGCGACATTAGTCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
143007 TGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAAAGGTGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
143056 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-ATG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
143104 TGCCAATATGCTAATTCAAGG-CTGACGATATTGGGCTTAAAAAAGGTTG-AGG
1 TGCCAATATGCTGATTCAAGGCCAG-CGATATTGGACTT---AAA-GATGAAGG
* * * * ** * * *
143156 TGCCGATGTGCTGATTCAAGGCCAACGACATCAGTCTCAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
143205 TGCCAATATGCTAATTCAAGGCCAGCGATACTGGGC-T-----T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * **
143244 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAA-AACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
143292 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGGC-T-----T--A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * *
143331 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
143380 TGCCAATATGCTGATTCAAGGCCAGTGATACTGCG-C-T-----T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTG-GACTTAAAGATGAAGG
* * * * * * *
143419 TGCCAATGTGTTGATTCAAGGCCTGCAACATTGGTCTTAAAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
143467 TGCGAATATGCTGATTCAAGGCTAGCGATATTGGAC-TCAAGATGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGG
* *
143518 TGCCAATATGCTGATTCAAAGCCAGCGATATTTGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * *
143561 TGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTCAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
143610 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
143652 GTGTCACGGA
Statistics
Matches: 541, Mismatches: 104, Indels: 98
0.73 0.14 0.13
Matches are distributed among these distances:
38 1 0.00
39 91 0.17
40 3 0.01
41 1 0.00
43 36 0.07
45 1 0.00
47 10 0.02
48 97 0.18
49 228 0.42
50 1 0.00
51 39 0.07
52 32 0.06
53 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
Found at i:143261 original size:39 final size:39
Alignment explanation
Indices: 143204--143441 Score: 161
Period size: 39 Copynumber: 5.6 Consensus size: 39
143194 AAAGATAAAG
* *
143204 GTGCCAATATGCTAATTCAAGGCCAGCGATACTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * *
143243 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
143282 AAAAACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * * *
143330 ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T
* * *
143375 AAAGGTGCCAATATGCTGATTCAAGGCCAGTGATACTGCGCTT
1 ----GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* *
143418 GTGCCAATGTGTTGATTCAAGGCC
1 GTGCCAATATGCTGATTCAAGGCC
143442 TGCAACATTG
Statistics
Matches: 155, Mismatches: 25, Indels: 38
0.71 0.11 0.17
Matches are distributed among these distances:
39 87 0.56
40 1 0.01
43 1 0.01
45 1 0.01
48 36 0.23
49 29 0.19
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
Found at i:143319 original size:87 final size:88
Alignment explanation
Indices: 143155--143496 Score: 492
Period size: 88 Copynumber: 3.9 Consensus size: 88
143145 AAAGGTTGAG
* * * ** * *
143155 GTGCCGATGTGCTGATTCAAGGCCAACGACATCAGTCTCAAAGATAAAGGTGCCAATATGCTAAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
143220 TCAAGGCCAGCGATACTGGGCTT
66 TCAAGGCCAGCGATACTGGGCTT
*
143243 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAA-A-ACAAGGTGCCAATATGCTGA
1 GTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATA-AAGGTGCCAATATGCTGA
* *
143306 TTCAAGGCTAGCGATATTGGGCTT
65 TTCAAGGCCAGCGATACTGGGCTT
*
143330 ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
* *
143395 TCAAGGCCAGTGATACTGCGCTT
66 TCAAGGCCAGCGATACTGGGCTT
* * * *
143418 GTGCCAATGTGTTGATTCAAGGCCTGCAACATTGGTCTTAAAGA-CAAGGTGCGAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
*
143482 TCAAGGCTAGCGATA
66 TCAAGGCCAGCGATA
143497 TTGGACTCAA
Statistics
Matches: 230, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
86 1 0.00
87 111 0.48
88 117 0.51
89 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (88 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
TCAAGGCCAGCGATACTGGGCTT
Found at i:143452 original size:175 final size:175
Alignment explanation
Indices: 143156--143500 Score: 564
Period size: 175 Copynumber: 2.0 Consensus size: 175
143146 AAGGTTGAGG
* *
143156 TGCCGATGTGCTGATTCAAGGCCAACGACATCAGTCTCAAAGATAAAGGTGCCAATATGCTAATT
1 TGCCAATGTGCTGATTCAAGGCCAACAACATCAGTCTCAAAGATAAAGGTGCCAATATGCTAATT
* *
143221 CAAGGCCAGCGATACTGGGCTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAA
66 CAAGGCCAGCGATACTGCGCTTGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAA
143286 ACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTA
131 ACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTA
* ** * *
143331 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACAACATCAGTCTCAAAGATAAAGGTGCCAATATGCTAATT
* * * *
143396 CAAGGCCAGTGATACTGCGCTTGTGCCAATGTGTTGATTCAAGGCCTGCAACATTGGTCTTAAAG
66 CAAGGCCAGCGATACTGCGCTTGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAA
*
143461 ACAAGGTGCGAATATGCTGATTCAAGGCTAGCGATATTGG
131 ACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGG
143501 ACTCAAGATG
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
175 156 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (175 bp):
TGCCAATGTGCTGATTCAAGGCCAACAACATCAGTCTCAAAGATAAAGGTGCCAATATGCTAATT
CAAGGCCAGCGATACTGCGCTTGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAA
ACAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTA
Found at i:143574 original size:43 final size:43
Alignment explanation
Indices: 143513--143654 Score: 149
Period size: 43 Copynumber: 3.2 Consensus size: 43
143503 TCAAGATGAA
*
143513 AAAGGTGCCAATATGCTGATTCAAAGCCAGCGATATTTGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTTGACTT
* * * * **
143556 AAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTCAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT---T-T--GACTT
* *
143605 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTTGACTT
143648 AAAGGTG
1 AAAGGTG
143655 TCACGGAGTT
Statistics
Matches: 77, Mismatches: 16, Indels: 12
0.73 0.15 0.11
Matches are distributed among these distances:
43 40 0.52
46 2 0.03
47 1 0.01
49 34 0.44
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTTGACTT
Found at i:143634 original size:92 final size:92
Alignment explanation
Indices: 143463--143654 Score: 269
Period size: 92 Copynumber: 2.1 Consensus size: 92
143453 TCTTAAAGAC
* * * * *
143463 AAGGTGCGAATATGCTGATTCAAGGCTAGCGATATTGGACTCAAGATGAAAAAGGTGCCAATATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTCAAGATG--AAAGGTGCCAATATG
*
143528 CTGATTCAAAGCCAGCGATATTTGACTTA
64 CTGATTCAAAGCCAGCGATATTGGACTTA
* *
143557 AAGGTGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTCAAAGATG-AAGGTGCCAATATGC
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTC-AAGATGAAAGGTGCCAATATGC
*
143621 TGATTCAAGGCCAGCGATATTGGACTTA
65 TGATTCAAAGCCAGCGATATTGGACTTA
143649 AAGGTG
1 AAGGTG
143655 TCACGGAGTT
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
92 47 0.53
94 35 0.40
95 6 0.07
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (92 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTCAAGATGAAAGGTGCCAATATGCT
GATTCAAAGCCAGCGATATTGGACTTA
Found at i:143640 original size:143 final size:136
Alignment explanation
Indices: 143331--143651 Score: 383
Period size: 143 Copynumber: 2.3 Consensus size: 136
143321 ATTGGGCTTA
* * * * * *
143331 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAAGAAAAAGGTGCCAATATGCTGATT
* * * * ** * *
143396 CAAGGCCAGTGATACTGCGCTTGTGCCAATGTGTTGATTCAAGGCCTGCAACATTGGTCTTAAAG
66 CAAAGCCAGCGATACTGCACTTGTGCCAATGTGCTGATTCAAGGCCAACAACATCGGTCTCAAAG
143461 ACAAGG
131 ACAAGG
* *
143467 TGCGAATATGCTGATTCAAGGCTAGCGATATTGGACTCAAGATGAAAAAGGTGCCAATATGCTGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAA-A-GAAAAAGGTGCCAATATGCTGA
* *
143532 TTCAAAGCCAGCGATATTTG-ACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATCGGT
64 TTCAAAGCCAGCGATA-CTGCACTT----GTGCCAATGTGCTGATTCAAGGCCAACAACATCGGT
*
143596 CTCAAAGATGAAGG
124 CTCAAAGA-CAAGG
*
143610 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAAG
143652 GTGTCACGGA
Statistics
Matches: 155, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
136 33 0.21
137 1 0.01
138 38 0.25
139 2 0.01
141 1 0.01
142 39 0.25
143 41 0.26
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (136 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTCAAAGAAAAAGGTGCCAATATGCTGATT
CAAAGCCAGCGATACTGCACTTGTGCCAATGTGCTGATTCAAGGCCAACAACATCGGTCTCAAAG
ACAAGG
Found at i:143736 original size:32 final size:34
Alignment explanation
Indices: 143660--143736 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
143650 AGGTGTCACG
* **
143660 GAGTTATGGACTTAAAAGGAAAAAGAGTGCCATG
1 GAGTTATGGACATAAAAGGAAAAAGAGTGCCACA
*
143694 GAGTTGTGGACATAAAAGG-AAAA-AGTGCCACA
1 GAGTTATGGACATAAAAGGAAAAAGAGTGCCACA
*
143726 GAGTCATGGAC
1 GAGTTATGGAC
143737 TTTTGGAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
32 16 0.43
33 4 0.11
34 17 0.46
ACGTcount: A:0.40, C:0.12, G:0.30, T:0.18
Consensus pattern (34 bp):
GAGTTATGGACATAAAAGGAAAAAGAGTGCCACA
Found at i:143765 original size:30 final size:31
Alignment explanation
Indices: 143712--144128 Score: 205
Period size: 33 Copynumber: 13.3 Consensus size: 31
143702 GACATAAAAG
* * *
143712 GAAAA-AG-TGCCACAGAGTCATGGACTTTT
1 GAAAAGAGATGCCACTGAGTAATGGACTTTA
* *
143741 GGAAA-AGATGCTACTGAGTAATGGA-TTTA
1 GAAAAGAGATGCCACTGAGTAATGGACTTTA
**
143770 GAAAAGAGATGCCACTGAGTTGTGGACTTTGAA
1 GAAAAGAGATGCCACTGAGTAATGGACTTT--A
* ** *
143803 GAAAA-AGGATGCCACTAAGTCGTGGACTTGGAA
1 GAAAAGA-GATGCCACTGAGTAATGGACTT--TA
* * ** * **
143836 GAAAAAAGATGCCACTTAGTGGTAGACATGGA
1 GAAAAGAGATGCCACTGAGTAATGGAC-TTTA
**
143868 TGAAAAG-GATGCCACTGAGTCGTGGAC-TTA
1 -GAAAAGAGATGCCACTGAGTAATGGACTTTA
**
143898 GAAAAGAGATGCCAGCTGAGTTGTGGACTTTGAA
1 GAAAAGAGATGCCA-CTGAGTAATGGACTTT--A
* * * *
143932 GAAAAAAGATGCCACTGTGTCATGGACTTGGAA
1 GAAAAGAGATGCCACTGAGTAATGGACTT--TA
*
143965 GAAAA-AGATGCCACTGAGTCATGGAC-TTA
1 GAAAAGAGATGCCACTGAGTAATGGACTTTA
* *
143994 GAAGAAAAAGATTGCCACTGAGTCATGGACTTT-
1 G-A-AAAGAGA-TGCCACTGAGTAATGGACTTTA
**
144027 G--AAGAGATTGCCACTGAGTCGTGGACTTT-
1 GAAAAGAGA-TGCCACTGAGTAATGGACTTTA
* ** *
144056 GAAAAGAGATTGCCACTGAATCGTGGACATT-
1 GAAAAGAGA-TGCCACTGAGTAATGGACTTTA
** * **
144087 GGGAAGAGATGCCACTGAATCGTGGACTTTGA
1 GAAAAGAGATGCCACTGAGTAATGGACTTT-A
*
144119 GAAGAGAGAT
1 GAAAAGAGAT
144129 TTGAAGAATT
Statistics
Matches: 320, Mismatches: 41, Indels: 51
0.78 0.10 0.12
Matches are distributed among these distances:
29 48 0.15
30 60 0.19
31 52 0.16
32 51 0.16
33 91 0.28
34 18 0.06
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.23
Consensus pattern (31 bp):
GAAAAGAGATGCCACTGAGTAATGGACTTTA
Found at i:143814 original size:33 final size:33
Alignment explanation
Indices: 143771--144118 Score: 300
Period size: 33 Copynumber: 10.9 Consensus size: 33
143761 ATGGATTTAG
*
143771 AAAAGAGATGCCACTGAGTTGTGGACTTTGAAGA
1 AAAAG-GATGCCACTGAGTCGTGGACTTTGAAGA
* *
143805 AAAAGGATGCCACTAAGTCGTGGACTTGGAAGA
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAAGA
* * * * * * *
143838 AAAAAGATGCCACTTAGTGGTAGACATGGATG-
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAAGA
143870 AAAAGGATGCCACTGAGTCGTGGAC-TT--AG-
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAAGA
*
143899 AAAAGAGATGCCAGCTGAGTTGTGGACTTTGAAGA
1 AAAAG-GATGCCA-CTGAGTCGTGGACTTTGAAGA
* * * *
143934 AAAAAGATGCCACTGTGTCATGGACTTGGAAGA
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAAGA
* *
143967 AAAA-GATGCCACTGAGTCATGGACTTAGAAGA
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAAGA
*
143999 AAAA-GATTGCCACTGAGTCATGGACTTTGAAG-
1 AAAAGGA-TGCCACTGAGTCGTGGACTTTGAAGA
144031 ---A-GATTGCCACTGAGTCGTGGACTTTG-A-A
1 AAAAGGA-TGCCACTGAGTCGTGGACTTTGAAGA
* * * *
144059 AAGA-GATTGCCACTGAATCGTGGACATTG--GG
1 AAAAGGA-TGCCACTGAGTCGTGGACTTTGAAGA
* *
144090 AAGA-GATGCCACTGAATCGTGGACTTTGA
1 AAAAGGATGCCACTGAGTCGTGGACTTTGA
144119 GAAGAGAGAT
Statistics
Matches: 272, Mismatches: 29, Indels: 29
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.00
29 31 0.11
30 28 0.10
31 43 0.16
32 55 0.20
33 96 0.35
34 14 0.05
35 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (33 bp):
AAAAGGATGCCACTGAGTCGTGGACTTTGAAGA
Found at i:143891 original size:65 final size:66
Alignment explanation
Indices: 143743--144058 Score: 309
Period size: 65 Copynumber: 5.0 Consensus size: 66
143733 GGACTTTTGG
* * * *
143743 AAAAGATGCTACTGAGTAATGGA-TT--TAGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGA
1 AAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAAAGATGCCACTGAGTTGTGGACTTTGAAGA
143805 A
66 A
* * * * * * * * *
143806 AAAGGATGCCACTAAGTCGTGGACTTGGAAGAAAAAAGATGCCACTTAGTGGTAGACATGGATG-
1 AAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAAAGATGCCACTGAGTTGTGGACTTTGAAGA
143870 A
66 A
* * *
143871 AAAGGATGCCACTGAGTCGTGGACTT---AGAAAAGAGATGCCAGCTGAGTTGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAAAGATGCCA-CTGAGTTGTGGACTTTGAAG
143933 AA
65 AA
* ** *
143935 AAAAGATGCCACTGTGTCATGGACTTGGAAG-AAAAAGATGCCACTGAGTCATGGACTTAGAAG-
1 AAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAAAGATGCCACTGAGTTGTGGACTTTGAAGA
143998 A
66 A
* *
143999 AAAAGATTGCCACTGAGTCATGGACTTTGAAG-----AGATTGCCACTGAGTCGTGGACTTTGAA
1 AAAAGA-TGCCACTGAGTCATGGACTTGGAAGAAAAAAGA-TGCCACTGAGTTGTGGACTTTGAA
144059 AAGAGATTGC
Statistics
Matches: 211, Mismatches: 32, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
61 3 0.01
62 36 0.17
63 32 0.15
64 33 0.16
65 66 0.31
66 39 0.18
67 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (66 bp):
AAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAAAGATGCCACTGAGTTGTGGACTTTGAAGA
A
Found at i:143943 original size:129 final size:126
Alignment explanation
Indices: 143742--144058 Score: 413
Period size: 129 Copynumber: 2.5 Consensus size: 126
143732 TGGACTTTTG
* * *
143742 GAAAAGATGCTACTGAGTAATGGATTTAGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAA
1 GAAAAGATGCCACTGAGTCATGGACTTAGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAA
* * * ** * *
143807 AAGGATGCCACTAAGTCGTGGACTTGGAAGAAAAAAGATGCCACTTAGTGGTAGACATGGAT
66 AAAGATGCCACTAAGTCATGGACTTGGAAG-AAAAAGATGCCACTGAGTCATAGACATAGAA
*
143869 GAAAAGGATGCCACTGAGTCGTGGACTTAGAAAAGAGATGCCAGCTGAGTTGTGGACTTTGAAGA
1 GAAAA-GATGCCACTGAGTCATGGACTTAGAAAAGAGATGCCA-CTGAGTTGTGGACTTTGAAGA
** * *
143934 AAAAAGATGCCACTGTGTCATGGACTTGGAAGAAAAAGATGCCACTGAGTCATGGACTTAGAA
64 AAAAAGATGCCACTAAGTCATGGACTTGGAAGAAAAAGATGCCACTGAGTCATAGACATAGAA
* *
143997 GAAAAAGATTGCCACTGAGTCATGGACTTTG--AAGAGATTGCCACTGAGTCGTGGACTTTGAA
1 G-AAAAGA-TGCCACTGAGTCATGGACTTAGAAAAGAGA-TGCCACTGAGTTGTGGACTTTGAA
144059 AAGAGATTGC
Statistics
Matches: 167, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
127 29 0.17
128 65 0.39
129 73 0.44
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (126 bp):
GAAAAGATGCCACTGAGTCATGGACTTAGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAA
AAAGATGCCACTAAGTCATGGACTTGGAAGAAAAAGATGCCACTGAGTCATAGACATAGAA
Found at i:145391 original size:16 final size:14
Alignment explanation
Indices: 145363--145405 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
145353 TATTTTTTTG
145363 TTTTTGTTTTTGTT
1 TTTTTGTTTTTGTT
145377 TTTTTGTGTTGTTGTT
1 TTTTTGT-TT-TTGTT
*
145393 TTTTTCTTTTTGT
1 TTTTTGTTTTTGT
145406 ATTTGCACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 11 0.42
15 4 0.15
16 11 0.42
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.81
Consensus pattern (14 bp):
TTTTTGTTTTTGTT
Found at i:145404 original size:22 final size:22
Alignment explanation
Indices: 145355--145405 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
145345 TTTGCGTGTA
145355 TTTTTTTGT-TT-TTGTTTTTG
1 TTTTTTTGTGTTGTTGTTTTTG
145375 TTTTTTTGTGTTGTTGTTTTT-
1 TTTTTTTGTGTTGTTGTTTTTG
145396 TTCTTTTTGT
1 TT-TTTTTGT
145406 ATTTGCACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.32
21 4 0.14
22 15 0.54
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (22 bp):
TTTTTTTGTGTTGTTGTTTTTG
Found at i:147991 original size:365 final size:365
Alignment explanation
Indices: 147321--148039 Score: 1393
Period size: 365 Copynumber: 2.0 Consensus size: 365
147311 CACCAAAGAT
147321 AGCGATTTCGCATCAAGAGCTTCGAACCCCTTCGATAGTTCGAAGTCGTTTTTCTAGGAGTTCGA
1 AGCGATTTCGCATCAAGAGCTTCGAACCCCTTCGATAGTTCGAAGTCGTTTTTCTAGGAGTTCGA
*
147386 ACTTATTCATTTCTTCTGCATTCATGGCAGACCTTTGAGCTTTTACCTTTTCTACTTCTTCATGA
66 ACTTATTCATTTCTTCTGCAGTCATGGCAGACCTTTGAGCTTTTACCTTTTCTACTTCTTCATGA
147451 TCAAGGGTTATCGGATCAGCTAGTGAAACCCCTGCATTCACCCCTTGAGAGCCAGGAATGAATTG
131 TCAAGGGTTATCGGATCAGCTAGTGAAACCCCTGCATTCACCCCTTGAGAGCCAGGAATGAATTG
147516 GCTTGCCGTCATGGGATTTAAGTAGATAACCGGTGGTGCCTGAGAAGCAGGTGAAGGAACAGACC
196 GCTTGCCGTCATGGGATTTAAGTAGATAACCGGTGGTGCCTGAGAAGCAGGTGAAGGAACAGACC
147581 GTGGTTCTTGCCTAGTTTCCCCTTGGATGGGTTCTGGATGACTGGCAGAGGGGATTTCAGTGTTG
261 GTGGTTCTTGCCTAGTTTCCCCTTGGATGGGTTCTGGATGACTGGCAGAGGGGATTTCAGTGTTG
147646 GGAGGATCATTCCTTGTTTCACCAGTGCTTTCACATCAAG
326 GGAGGATCATTCCTTGTTTCACCAGTGCTTTCACATCAAG
* *
147686 AGCGATTTCGCATCAAGAGCTTCGAACCCTTTCGATAGTTCGGAGTCGTTTTTCTAGGAGTTCGA
1 AGCGATTTCGCATCAAGAGCTTCGAACCCCTTCGATAGTTCGAAGTCGTTTTTCTAGGAGTTCGA
* *
147751 ACTTATTCATTTCTTCTGCAGTCATGGCGGACCTTTGAGCTTTTACCTTTTCTACTTTTTCATGA
66 ACTTATTCATTTCTTCTGCAGTCATGGCAGACCTTTGAGCTTTTACCTTTTCTACTTCTTCATGA
147816 TCAAGGGTTATCGGATCAGCTAGTGAAACCCCTGCATTCACCCCTTGAGAGCCAGGAATGAATTG
131 TCAAGGGTTATCGGATCAGCTAGTGAAACCCCTGCATTCACCCCTTGAGAGCCAGGAATGAATTG
147881 GCTTGCCGTCATGGGATTTAAGTAGATAACCGGTGGTGCCTGAGAAGCAGGTGAAGGAACAGACC
196 GCTTGCCGTCATGGGATTTAAGTAGATAACCGGTGGTGCCTGAGAAGCAGGTGAAGGAACAGACC
147946 GTGGTTCTTGCCTAGTTTCCCCTTGGATGGGTTCTGGATGACTGGCAGAGGGGATTTCAGTGTTG
261 GTGGTTCTTGCCTAGTTTCCCCTTGGATGGGTTCTGGATGACTGGCAGAGGGGATTTCAGTGTTG
148011 GGAGGATCATTCCTTGTTTCACCAGTGCT
326 GGAGGATCATTCCTTGTTTCACCAGTGCT
148040 GGCTTGCCCT
Statistics
Matches: 349, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
365 349 1.00
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (365 bp):
AGCGATTTCGCATCAAGAGCTTCGAACCCCTTCGATAGTTCGAAGTCGTTTTTCTAGGAGTTCGA
ACTTATTCATTTCTTCTGCAGTCATGGCAGACCTTTGAGCTTTTACCTTTTCTACTTCTTCATGA
TCAAGGGTTATCGGATCAGCTAGTGAAACCCCTGCATTCACCCCTTGAGAGCCAGGAATGAATTG
GCTTGCCGTCATGGGATTTAAGTAGATAACCGGTGGTGCCTGAGAAGCAGGTGAAGGAACAGACC
GTGGTTCTTGCCTAGTTTCCCCTTGGATGGGTTCTGGATGACTGGCAGAGGGGATTTCAGTGTTG
GGAGGATCATTCCTTGTTTCACCAGTGCTTTCACATCAAG
Found at i:152107 original size:13 final size:13
Alignment explanation
Indices: 152089--152115 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
152079 TCCAAAGATG
152089 AATGTATCGATAC
1 AATGTATCGATAC
152102 AATGTATCGATAC
1 AATGTATCGATAC
152115 A
1 A
152116 TTTAGTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:158403 original size:15 final size:14
Alignment explanation
Indices: 158383--158413 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
158373 CGTCCTCCAT
158383 AAAAAAACAAAACAA
1 AAAAAAACAAAA-AA
158398 AAAAAAACAAAAAA
1 AAAAAAACAAAAAA
158412 AA
1 AA
158414 TAGCAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAAAAA
Found at i:159500 original size:37 final size:37
Alignment explanation
Indices: 159449--159533 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
159439 CATCATATTC
*
159449 ATGCATTTGAGACATTCACAACATTTCATTTTGCATG
1 ATGCATTTGTGACATTCACAACATTTCATTTTGCATG
*
159486 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
1 ATGCATTTGTGACATTCACAACATTTCATTTTGCATG
159523 ATGCATTTGTG
1 ATGCATTTGTG
159534 CTTCATCTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (37 bp):
ATGCATTTGTGACATTCACAACATTTCATTTTGCATG
Found at i:159997 original size:28 final size:29
Alignment explanation
Indices: 159895--160277 Score: 439
Period size: 28 Copynumber: 13.5 Consensus size: 29
159885 ATTCCTCACC
159895 TTCAAAAGCCCACAAGTCAGTGGCACAC-T
1 TTCAAAAGCCCACAAGTCAGTGGCAC-CTT
*
159924 TTCAAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
*
159953 TTCAAAAGCCCACAAGTTAGTGGCACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
159982 TTC-AAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
* * * *
160010 TTC-AAAGCCCATAAGTTAATGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
* * *
160038 TTCAAAAGCCCACAAGTTAGTGGGAAC-T
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
*
160066 TTCAAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
* *
160095 TTC-GAAGCCCACAAGTTAGTGGCAACC--
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTT
* *
160122 TTCAAAAGCCCACAAGTTAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
160151 TTCAAAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
* * *
160180 TTC-AAAGCCCATAAGTCAATGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
* *
160208 TTC-GAAGCCCACAAATCAGTGGCAACC--
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTT
* ** *
160235 TTCAAAAGCACACAAGTTGGT-GCAACCCT
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTT
160264 TTCAAAAGCCCACA
1 TTCAAAAGCCCACA
160278 GAAGTTGGTG
Statistics
Matches: 307, Mismatches: 36, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
27 14 0.05
28 167 0.54
29 126 0.41
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (29 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCTT
Found at i:160043 original size:85 final size:86
Alignment explanation
Indices: 159895--160277 Score: 485
Period size: 85 Copynumber: 4.5 Consensus size: 86
159885 ATTCCTCACC
*
159895 TTCAAAAGCCCACAAGTCAGTGGCACAC-TTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAA
1 TTCAAAAGCCCACAAGTCAGTGGCAC-CTTTTC-AAAGCCCACAAGTCAATGGCATCTTTTCAAA
159959 AGCCCACAAGTTAGTGGCACCTT
64 AGCCCACAAGTTAGTGGCACCTT
* *
159982 TTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTTAATGGCATCTTTTCAAAAG
1 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAATGGCATCTTTTCAAAAG
* *
160046 CCCACAAGTTAGTGGGAAC-T
66 CCCACAAGTTAGTGGCACCTT
* * * * * *
160066 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTCGAAGCCCACAAGTTAGTGGCAAC-CTTCAAAAG
1 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAATGGCATCTTTTCAAAAG
*
160130 CCCACAAGTTAGTGGCATCTT
66 CCCACAAGTTAGTGGCACCTT
* *
160151 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAATGGCATCTTTTC-GAAG
1 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAATGGCATCTTTTCAAAAG
* *
160215 CCCACAAATCAGTGGCAACC--
66 CCCACAAGTTAGTGGC-ACCTT
* ** *
160235 TTCAAAAGCACACAAGTTGGT-GCAACCCTTTCAAAAGCCCACA
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTTTTC-AAAGCCCACA
160278 GAAGTTGGTG
Statistics
Matches: 260, Mismatches: 29, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
83 2 0.01
84 54 0.21
85 170 0.65
86 31 0.12
87 3 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (86 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAATGGCATCTTTTCAAAAG
CCCACAAGTTAGTGGCACCTT
Found at i:160267 original size:113 final size:114
Alignment explanation
Indices: 159892--160277 Score: 521
Period size: 113 Copynumber: 3.4 Consensus size: 114
159882 GACATTCCTC
* * *
159892 ACCTTCAAAAGCCCACAAGTCAGTGGCACACTTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCA
1 ACCTTCAAAAGCCCACAAGTTAGTGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCAACTTTTCA
* * *
159957 AAAGCCCACAAGTTAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGC-
66 AAAGCCCACAAGTCAGTGGCATCTTTTCGAAGCCCACAAGTCAGTGGCA
* * * * * *
160005 ACCTTTTC-AAAGCCCATAAGTTAATGGCATCTTTTCAAAAGCCCACAAGTTAGTGGGAAC-TTT
1 ACC--TTCAAAAGCCCACAAGTTAGTGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCAACTTTT
*
160068 CAAAAGCCCACAAGTCAGTGGCATCTTTTCGAAGCCCACAAGTTAGTGGCA
64 CAAAAGCCCACAAGTCAGTGGCATCTTTTCGAAGCCCACAAGTCAGTGGCA
* * *
160119 ACCTTCAAAAGCCCACAAGTTAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCACCTTTTC-
1 ACCTTCAAAAGCCCACAAGTTAGTGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCAACTTTTCA
* * *
160183 AAAGCCCATAAGTCAATGGCATCTTTTCGAAGCCCACAAATCAGTGGCA
66 AAAGCCCACAAGTCAGTGGCATCTTTTCGAAGCCCACAAGTCAGTGGCA
* *
160232 ACCTTCAAAAGCACACAAGTTGGT-GCAACCCTTTCAAAAGCCCACA
1 ACCTTCAAAAGCCCACAAGTTAGTGGC-ACCCTTTCAAAAGCCCACA
160278 GAAGTTGGTG
Statistics
Matches: 241, Mismatches: 26, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
112 5 0.02
113 183 0.76
114 50 0.21
115 3 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (114 bp):
ACCTTCAAAAGCCCACAAGTTAGTGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCAACTTTTCA
AAAGCCCACAAGTCAGTGGCATCTTTTCGAAGCCCACAAGTCAGTGGCA
Found at i:160347 original size:43 final size:45
Alignment explanation
Indices: 160294--160572 Score: 260
Period size: 43 Copynumber: 6.0 Consensus size: 45
160284 GGTGGCATAA
*
160294 TCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C
1 TCTT-TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC
* * *
160339 -CTTTAAGCCCAATGTTGCTGGCCTTGAATCAGCGCATTGGCACCTTC
1 TCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C--C
* * *
160386 ATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACC
1 -TCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC
* * * **
160432 ATGTCTTTAAGACCAATGTCGCTAGCCTTGAATCAGTGCATTGGCACCTTC
1 ---TCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C--C
** * * * *
160483 ATCTTTAAGTTCGATATCGCTGGCCTTGAATTAGCATATTGACA-C
1 -TCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC
160528 -CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC
1 TCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC
160572 T
1 T
160573 TAACCATCTT
Statistics
Matches: 186, Mismatches: 35, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
43 71 0.38
44 4 0.02
45 1 0.01
46 1 0.01
47 1 0.01
48 37 0.20
49 70 0.38
51 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (45 bp):
TCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC
Found at i:160411 original size:49 final size:49
Alignment explanation
Indices: 160293--160865 Score: 394
Period size: 49 Copynumber: 11.8 Consensus size: 49
160283 TGGTGGCATA
* *
160293 ATCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA----C
1 ATCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * * *
160339 --CTTTAAGCCCAATGTTGCTGGCCTTGAATCAGCGCATTGGCACCTTC
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * *
160386 ATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCAT-
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * * * **
160434 GTCTTTAAGACCAATGTCGCTAGCCTTGAATCAGTGCATTGGCACCTTC
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * * *
160483 ATCTTTAAGTTCGATATCGCTGGCCTTGAATTAGCATATT-G-A----C
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
* *
160526 ACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTAACC
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT---C
* * * * * *
160578 ATCTTTAAGTCTAATGTCACCGGCCTTGAATCAGCACATTGGCATCTTT
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
*** * * * * *
160627 ATCTTTTAAGTTTGATATCGCTGGCCTTGGATCAGGATATTGGCACTTTT
1 ATC-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
** * * **
160677 ATCTTTAAGAGCAATGTCGCTGGCCTTGAATAAGTGCATTGGCACCTTC
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
** * * * *
160726 ATCTTTAAGTCTGATAT-GATTGGCCTTGAATCAGCATATTGACATCATTAAC
1 ATCTTTAAGTCCAATATCG-CTGGCCTTGAATCAGCACATTGGCA-CCTT--C
* * * * *
160778 AT-TCCTAAGCCCAATGTCGTTGGCCTT-ATCTCAAG-ACATTGGCA--TTC
1 ATCT-TTAAGTCCAATATCGCTGGCCTTGA-ATC-AGCACATTGGCACCTTC
* * *
160825 -TCTTTCAAGTCTAATGTCGCTGGCCATGAATCAGCACATTG
1 ATCTTT-AAGTCCAATATCGCTGGCCTTGAATCAGCACATTG
160866 TCATTCTTCA
Statistics
Matches: 406, Mismatches: 92, Indels: 57
0.73 0.17 0.10
Matches are distributed among these distances:
43 70 0.17
44 4 0.01
45 1 0.00
46 4 0.01
47 29 0.07
48 42 0.10
49 139 0.34
50 42 0.10
51 2 0.00
52 70 0.17
53 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (49 bp):
ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
Found at i:160477 original size:97 final size:93
Alignment explanation
Indices: 160293--160621 Score: 419
Period size: 97 Copynumber: 3.5 Consensus size: 93
160283 TGGTGGCATA
* *
160293 ATCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC-CTTTAAGCCCAATGTTGC
1 ATCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACACTTTAAGCCCAATGTCGC
160357 TGGCCTTGAATCAGCGCATTGGCACCTTC
65 TGGCCTTGAATCAGCGCATTGGCACCTTC
* *
160386 ATCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCATGTCTTTAAGACCAATGT
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CA---CTTTAAGCCCAATGT
* *
160451 CGCTAGCCTTGAATCAGTGCATTGGCACCTTC
62 CGCTGGCCTTGAATCAGCGCATTGGCACCTTC
* * * * *
160483 ATCTTTAAGTTCGATATCGCTGGCCTTGAATTAGCATATTGACAC-CTTTAAGCCCAATATCGCT
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACACTTTAAGCCCAATGTCGCT
*
160547 GGCCTTGAATCAGCACATTGGCACCTTAACC
66 GGCCTTGAATCAGCGCATTGGCACCTT---C
* * * * *
160578 ATCTTTAAGTCTAATGTCACCGGCCTTGAATCAGCACATTGGCA
1 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
160622 TCTTTATCTT
Statistics
Matches: 205, Mismatches: 23, Indels: 14
0.85 0.10 0.06
Matches are distributed among these distances:
92 78 0.38
93 6 0.03
95 36 0.18
96 1 0.00
97 84 0.41
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (93 bp):
ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACACTTTAAGCCCAATGTCGCT
GGCCTTGAATCAGCGCATTGGCACCTTC
Found at i:160556 original size:140 final size:143
Alignment explanation
Indices: 160388--160655 Score: 362
Period size: 144 Copynumber: 1.9 Consensus size: 143
160378 GCACCTTCAT
* * * **
160388 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACC-A-TGTCTTTAAGACCAATGT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTACCATCTTTAAGACCAATGT
* * **
160451 CGCTAGCCTTGAATCAGTGCATTGGCACCTTCATC-TTTAAGTTCGATATCGCTGGCCTTGAATT
66 CACCAGCCTTGAATCAGCACATTGGCACCTTCATCTTTTAAGTTCGATATCGCTGGCCTTGAATT
160515 AGCATATTGACAC
131 AGCATATTGACAC
* *
160528 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAGTCTAAT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-T-ACCATCTTTAAGACCAAT
* * * *
160593 GTCACCGGCCTTGAATCAGCACATTGGCATCTTTATCTTTTAAGTTTGATATCGCTGGCCTTG
64 GTCACCAGCCTTGAATCAGCACATTGGCACCTTCATCTTTTAAGTTCGATATCGCTGGCCTTG
160656 GATCAGGATA
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
140 41 0.38
143 1 0.01
144 42 0.39
145 24 0.22
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (143 bp):
CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTACCATCTTTAAGACCAATGT
CACCAGCCTTGAATCAGCACATTGGCACCTTCATCTTTTAAGTTCGATATCGCTGGCCTTGAATT
AGCATATTGACAC
Found at i:160730 original size:99 final size:100
Alignment explanation
Indices: 160355--160766 Score: 262
Period size: 97 Copynumber: 4.2 Consensus size: 100
160345 GCCCAATGTT
** * * * * * *
160355 GCTGGCCTTGAATCAGCGCATTGGCACCTT--CATCTTTAAGTCCAATATCGCTGGCCTTGAATT
1 GCTGGCCTTGAATCAGCATATTGGCACCTTACCATCTTTAAGGCTAATGTCACCGGCCTTGAATA
* * * * ** *
160418 AGCATATTGGCACCAT-GTCTTTAAGACCAATGTC
66 AGCACATTGGCACCTTCATCTTTAAGTCTGATATC
* *** * * * * *
160452 GCTAGCCTTGAATCAGTGCATTGGCACCTT--CATCTTTAA-GTTCGATATCGCTGGCCTTGAAT
1 GCTGGCCTTGAATCAGCATATTGGCACCTTACCATCTTTAAGGCT-AATGTCACCGGCCTTGAAT
* * * * **
160514 TAGCATATT-G-A----CACCTTTAAGCCCAATATC
65 AAGCACATTGGCACCTTCATCTTTAAGTCTGATATC
* *
160544 GCTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAGTCTAATGTCACCGGCCTTGAAT
1 GCTGGCCTTGAATCAGCATATTGGCACCTT-ACCATCTTTAAGGCTAATGTCACCGGCCTTGAAT
* * * *
160609 CAGCACATTGGCATCTTTATCTTTTAAGTTTGATATC
65 AAGCACATTGGCACCTTCATC-TTTAAGTCTGATATC
* * ** * *
160646 GCTGGCCTTGGATCAGGATATTGGCA-CTT-TTATCTTTAAGAGC-AATGTCGCTGGCCTTGAAT
1 GCTGGCCTTGAATCAGCATATTGGCACCTTACCATCTTTAAG-GCTAATGTCACCGGCCTTGAAT
**
160708 AAGTGCATTGGCACCTTCATCTTTAAGTCTGATAT-
65 AAGCACATTGGCACCTTCATCTTTAAGTCTGATATC
*
160743 GATTGGCCTTGAATCAGCATATTG
1 G-CTGGCCTTGAATCAGCATATTG
160767 ACATCATTAA
Statistics
Matches: 256, Mismatches: 44, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
92 41 0.16
95 32 0.12
96 3 0.01
97 66 0.26
98 32 0.12
99 42 0.16
100 1 0.00
101 5 0.02
102 34 0.13
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (100 bp):
GCTGGCCTTGAATCAGCATATTGGCACCTTACCATCTTTAAGGCTAATGTCACCGGCCTTGAATA
AGCACATTGGCACCTTCATCTTTAAGTCTGATATC
Found at i:161713 original size:13 final size:13
Alignment explanation
Indices: 161695--161720 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
161685 TTATTCAATA
161695 TATCGATACATTG
1 TATCGATACATTG
161708 TATCGATACATTG
1 TATCGATACATTG
161721 ATCTTTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:163064 original size:201 final size:202
Alignment explanation
Indices: 162712--163115 Score: 729
Period size: 201 Copynumber: 2.0 Consensus size: 202
162702 ATGCTTAACT
162712 TGGAAACGGTTTTGAAAAATCAATTTTTAAAGGCAAACAAAGATGTATTTTAACAAGGAAAACAT
1 TGGAAACGGTTTTGAAAAATCAATTTTTAAAGGCAAACAAAGATGTATTTTAACAAGGAAAACAT
*
162777 GATGAATATGAGTGACATTCATGGAGATGTTGGTTATCTAAATGATGTTATGAGCATGACAAAAG
66 GATGAATATGAGTGACATTCATGGAGATGTTGGCTATCTAAATGATGTTATGAGCATGACAAAAG
* *
162842 AAATGATATAAAAGCATGAACTCTCAAAGACAAGAATGATGAAATTTTCATAACAAAATTTCATG
131 AAATGATATAAAAGCATGAACTCTCAAAGACAAGAATGATAAAATTTTCACAACAAAATTTCATG
*
162907 GCATGGA
196 CCATGGA
*
162914 TGGAAA-GGTTTTGAAAAATCAATTTTTAAAGGCAAACAAAGATGTATTTTAGCAAGGAAAACAT
1 TGGAAACGGTTTTGAAAAATCAATTTTTAAAGGCAAACAAAGATGTATTTTAACAAGGAAAACAT
162978 GATGAATATGAGTGACATTCATGGAGATGTTGGCTATCTAAATGATGTTATGAGCATGACAAAAG
66 GATGAATATGAGTGACATTCATGGAGATGTTGGCTATCTAAATGATGTTATGAGCATGACAAAAG
* * *
163043 AAATTATATAAAAGCATGAACTCTCAAAGACAAGAATGCTAAAATTTTCACAACAACATTTCATG
131 AAATGATATAAAAGCATGAACTCTCAAAGACAAGAATGATAAAATTTTCACAACAAAATTTCATG
163108 CCATGGA
196 CCATGGA
163115 T
1 T
163116 CATGATAAAA
Statistics
Matches: 194, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
201 188 0.97
202 6 0.03
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.28
Consensus pattern (202 bp):
TGGAAACGGTTTTGAAAAATCAATTTTTAAAGGCAAACAAAGATGTATTTTAACAAGGAAAACAT
GATGAATATGAGTGACATTCATGGAGATGTTGGCTATCTAAATGATGTTATGAGCATGACAAAAG
AAATGATATAAAAGCATGAACTCTCAAAGACAAGAATGATAAAATTTTCACAACAAAATTTCATG
CCATGGA
Found at i:164223 original size:20 final size:20
Alignment explanation
Indices: 164200--164256 Score: 96
Period size: 20 Copynumber: 2.8 Consensus size: 20
164190 AGTATCCATA
164200 CATTCACTTATGTATCGATG
1 CATTCACTTATGTATCGATG
*
164220 CATTCACTTATGTATGGATG
1 CATTCACTTATGTATCGATG
164240 CATTCACTTATTGTATC
1 CATTCACTTA-TGTATC
164257 AATACAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 29 0.85
21 5 0.15
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (20 bp):
CATTCACTTATGTATCGATG
Found at i:165214 original size:52 final size:51
Alignment explanation
Indices: 165153--165343 Score: 152
Period size: 52 Copynumber: 3.7 Consensus size: 51
165143 GACACTAAAC
* * * * *
165153 TTAATGATGATATGAATGCCAATGTGCTAATTCAAGGCCAGCAACATTGGAT
1 TTAAAGATGATA-GAATGCCAATATGCTAATTCAAGGCTAGCGATATTGGAT
* * *
165205 TTAAAGATGATA-AAGTTGCTAATACGCTAATTCAAGGCTAGTGATATTGG-T
1 TTAAAGATGATAGAA--TGCCAATATGCTAATTCAAGGCTAGCGATATTGGAT
* * * * * *
165256 CTTAAAGATGACGAGAGTGCCAATCTACTGATTCAAGGCTAGCGATATTGGAC
1 -TTAAAGATGA-TAGAATGCCAATATGCTAATTCAAGGCTAGCGATATTGGAT
* * * *
165309 TTAAAGATGATAAGAGTGCTAATATACTGATTCAA
1 TTAAAGATGAT-AGAATGCCAATATGCTAATTCAA
165344 AGCAATGACA
Statistics
Matches: 112, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
50 2 0.02
51 1 0.01
52 107 0.96
53 1 0.01
54 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (51 bp):
TTAAAGATGATAGAATGCCAATATGCTAATTCAAGGCTAGCGATATTGGAT
Found at i:165415 original size:103 final size:104
Alignment explanation
Indices: 165182--165425 Score: 253
Period size: 103 Copynumber: 2.4 Consensus size: 104
165172 CAATGTGCTA
* * * *
165182 ATTCAAGGCCAGCAACATTGGATTTAAAGATGATAA-AGTTGCTAATACGCTAATTCAAGGCTAG
1 ATTCAAGGCCAGCAACATTGGACTTAAAGATGATAAGAGTTGCTAATACACTAATTCAAAGCTAA
* * * * *
165246 TGATATTGGTCTTAAAGATGACGAGAGTGCCAATCTACTG
66 TGACATTAGACTTAAAGATGACAAGAGTACCAATCTA-TG
* * * * *
165286 ATTCAAGGCTAGCGATATTGGACTTAAAGATGATAAGAG-TGCTAATATACTGATTCAAAGC-AA
1 ATTCAAGGCCAGCAACATTGGACTTAAAGATGATAAGAGTTGCTAATACACTAATTCAAAGCTAA
* * *
165349 TGACATTAGACTTAAAGATGATAAGGGTACCACAGTGT-TG
66 TGACATTAGACTTAAAGATGACAAGAGTACCA-A-TCTATG
* * *
165389 ATTCAACGCCAGCAACATTGGGCTTAAAAATGATAAG
1 ATTCAAGGCCAGCAACATTGGACTTAAAGATGATAAG
165426 GGCGTGAATG
Statistics
Matches: 114, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
103 59 0.52
104 51 0.45
105 4 0.04
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (104 bp):
ATTCAAGGCCAGCAACATTGGACTTAAAGATGATAAGAGTTGCTAATACACTAATTCAAAGCTAA
TGACATTAGACTTAAAGATGACAAGAGTACCAATCTATG
Found at i:165892 original size:19 final size:20
Alignment explanation
Indices: 165847--165895 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
165837 ACCTTTAGAT
*
165847 GTATCGATACATAATGCACA
1 GTATCGATACATAATCCACA
*
165867 GTATCGATACATAA-CCACT
1 GTATCGATACATAATCCACA
*
165886 TTATCGATAC
1 GTATCGATAC
165896 TTGCAAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (20 bp):
GTATCGATACATAATCCACA
Found at i:165999 original size:32 final size:33
Alignment explanation
Indices: 165958--166025 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
165948 CCTTAACTGT
*
165958 TTGTATCAATGCAT-A-CAAGATGTATCGATACA
1 TTGTATCAATACATGATCAA-ATGTATCGATACA
165990 TTGTATCAATACATGATCAAATGTATCGATACA
1 TTGTATCAATACATGATCAAATGTATCGATACA
166023 TTG
1 TTG
166026 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 17 0.52
34 3 0.09
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (33 bp):
TTGTATCAATACATGATCAAATGTATCGATACA
Done.