Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2382857
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.28
Warning! 280777 characters in sequence are not A, C, G, or T
File 7 of 12
Found at i:1245886 original size:22 final size:22
Alignment explanation
Indices: 1245861--1245916 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
1245851 ATGTGTAGTG
1245861 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
* *
1245883 ATGAACGGTGATGTATCGTTAC
1 ATGAACAGTGATGTATCGATAC
1245905 ATGAACAGTGAT
1 ATGAACAGTGAT
1245917 AAACAGTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:1245896 original size:95 final size:95
Alignment explanation
Indices: 1245733--1245927 Score: 300
Period size: 95 Copynumber: 2.1 Consensus size: 95
1245723 TACATGCATT
* *
1245733 TGAAATTATAGCCATTGGGTTTAATGTATAGTGATGAAAAGTGATGTATCGATACATGAACAGAG
1 TGAAATTATAGCCATTGGGCTCAATGTATAGTGATGAAAAGTGATGTATCGATACATGAACAGAG
*
1245798 ATGTATCGATACATAAACAGTGATAAATAG
66 ATGTATCGATACATAAACAGTGATAAACAG
* * * * *
1245828 TGAAATTGTAGCCATTGGGCTCAATGTGTAGTGATGAACAGTGATGTATCGATACATGAACGGTG
1 TGAAATTATAGCCATTGGGCTCAATGTATAGTGATGAAAAGTGATGTATCGATACATGAACAGAG
* *
1245893 ATGTATCGTTACATGAACAGTGATAAACAG
66 ATGTATCGATACATAAACAGTGATAAACAG
1245923 TGAAA
1 TGAAA
1245928 AATGAGATTT
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
95 90 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (95 bp):
TGAAATTATAGCCATTGGGCTCAATGTATAGTGATGAAAAGTGATGTATCGATACATGAACAGAG
ATGTATCGATACATAAACAGTGATAAACAG
Found at i:1247724 original size:42 final size:43
Alignment explanation
Indices: 1247644--1247724 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 43
1247634 GTTGGACTGA
* * * * *
1247644 CTTAACCAACTATAGGCCAACTTTATTATAGCTGAACCTTAGG
1 CTTAACCAACTACAGGCCAACTTGACTAGAGCTAAACCTTAGG
1247687 CTTAACCAACTACA-GCCAACTTGACTAGAGCTAAACCT
1 CTTAACCAACTACAGGCCAACTTGACTAGAGCTAAACCT
1247725 GTTAGCCATG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 20 0.61
43 13 0.39
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (43 bp):
CTTAACCAACTACAGGCCAACTTGACTAGAGCTAAACCTTAGG
Found at i:1247853 original size:54 final size:53
Alignment explanation
Indices: 1247682--1247885 Score: 178
Period size: 54 Copynumber: 3.8 Consensus size: 53
1247672 TAGCTGAACC
* * * * * ** *
1247682 TTAGGCTTAACCAACTACAGCCAACTTGACTAGAGCTAAACCTGTTAGCCATG
1 TTAGGCTTAACCAACTATAGCCAACCTCACTAAAGCTAAACTTGCCAGCTATG
* * * * *
1247735 TTAGGCTTAACCAACTATAGGCGAACTCTCATTAAAGCCAAACTTACCAGCTACAG
1 TTAGGCTTAACCAACTATA-GCCAAC-CTCACTAAAGCTAAACTTGCCAGCTA-TG
* *
1247791 -T-GGTCTTAACCAACTATTAACCAACATCACTAAAGCTAAACTTGCCAGCTATG
1 TTAGG-CTTAACCAACTA-TAGCCAACCTCACTAAAGCTAAACTTGCCAGCTATG
* **
1247844 TTAGGCTTAACTAGTTATGAGCCAACCTCACTAAAGCTAAAC
1 TTAGGCTTAACCAACTAT-AGCCAACCTCACTAAAGCTAAAC
1247886 CTACTAACTA
Statistics
Matches: 118, Mismatches: 25, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
53 20 0.17
54 60 0.51
55 35 0.30
56 3 0.03
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (53 bp):
TTAGGCTTAACCAACTATAGCCAACCTCACTAAAGCTAAACTTGCCAGCTATG
Found at i:1249649 original size:12 final size:11
Alignment explanation
Indices: 1249627--1249702 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1249617 AGAGAAAGAA
*
1249627 GAGAGAGGAGG
1 GAGATAGGAGG
1249638 GATGATAGGAGG
1 GA-GATAGGAGG
*
1249650 AGAGACAGGA--
1 -GAGATAGGAGG
*
1249660 GAGATAGTA--
1 GAGATAGGAGG
1249669 GAGATAGGAGG
1 GAGATAGGAGG
1249680 GATGATAGGAGG
1 GA-GATAGGAGG
*
1249692 AGAGACAGGAG
1 -GAGATAGGAG
1249703 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1249659 original size:24 final size:24
Alignment explanation
Indices: 1249626--1249711 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1249616 AAGAGAAAGA
*
1249626 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1249650 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1249668 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1249692 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1249712 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1249678 original size:42 final size:42
Alignment explanation
Indices: 1249617--1249735 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1249607 TAGCCCTCAA
* *
1249617 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1249659 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1249701 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1249736 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1254831 original size:54 final size:54
Alignment explanation
Indices: 1254760--1254876 Score: 162
Period size: 54 Copynumber: 2.1 Consensus size: 54
1254750 CTATATTGGA
*
1254760 TTTAGCCAATTAAGGGCTAACTTCACTAGAGCCAAACTTGCCAGCTATGTTGTGC
1 TTTA-CCAATTAAGGGCTAACTTCACTAGAGCCAAACTTGCCAGCTATGTTGGGC
* * * * *
1254815 TTTACCAATTATGGGCTAATTTCACTAGCGCCTAACTTGCTAGCTATGTTGGGC
1 TTTACCAATTAAGGGCTAACTTCACTAGAGCCAAACTTGCCAGCTATGTTGGGC
*
1254869 TTAACCAA
1 TTTACCAA
1254877 CTATAAGTTG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 51 0.93
55 4 0.07
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (54 bp):
TTTACCAATTAAGGGCTAACTTCACTAGAGCCAAACTTGCCAGCTATGTTGGGC
Found at i:1263068 original size:42 final size:42
Alignment explanation
Indices: 1263013--1263118 Score: 185
Period size: 42 Copynumber: 2.5 Consensus size: 42
1263003 TTCTTCTCTC
* *
1263013 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1263055 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
1263097 CTCCTCCTATCATCCCTCCTCT
1 CTCCTCCTATCATCCCTCCTCT
1263119 TAATTCTTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.09, C:0.47, G:0.03, T:0.41
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1263072 original size:12 final size:11
Alignment explanation
Indices: 1263046--1263116 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 11
1263036 TCTATTATCT
*
1263046 CTCCTGTCTCTC
1 CTCCTATCTC-C
1263058 CTCCTATCATCC
1 CTCCTATC-TCC
1263070 CTCCTATCT--
1 CTCCTATCTCC
*
1263079 CTACTATCT--
1 CTCCTATCTCC
*
1263088 CTCCTGTCTCTC
1 CTCCTATCTC-C
1263100 CTCCTATCATCC
1 CTCCTATC-TCC
1263112 CTCCT
1 CTCCT
1263117 CTTAATTCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
9 15 0.31
11 1 0.02
12 29 0.59
13 4 0.08
ACGTcount: A:0.10, C:0.48, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1263097 original size:18 final size:18
Alignment explanation
Indices: 1263028--1263098 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1263018 CCTGTCATCC
* *
1263028 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1263046 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1263068 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1263088 CTCCTGTCTCT
1 CTCCTGTCTCT
1263099 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1263893 original size:15 final size:15
Alignment explanation
Indices: 1263875--1263908 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1263865 TGTTTTTTTT
1263875 TTCTCTCTTTTTGTA
1 TTCTCTCTTTTTGTA
* *
1263890 TTCTTTTTTTTTGTA
1 TTCTCTCTTTTTGTA
1263905 TTCT
1 TTCT
1263909 TTAAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.74
Consensus pattern (15 bp):
TTCTCTCTTTTTGTA
Found at i:1263909 original size:15 final size:15
Alignment explanation
Indices: 1263882--1263910 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1263872 TTTTTCTCTC
1263882 TTTTTGTATTCTTTT
1 TTTTTGTATTCTTTT
1263897 TTTTTGTATTCTTT
1 TTTTTGTATTCTTT
1263911 AAAAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.79
Consensus pattern (15 bp):
TTTTTGTATTCTTTT
Found at i:1268455 original size:60 final size:60
Alignment explanation
Indices: 1268267--1269446 Score: 1497
Period size: 60 Copynumber: 19.4 Consensus size: 60
1268257 TTTTTAGCCC
* * * *
1268267 TTTAGTCCCCAAAGAGCAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACG-CCTTTTC-CTTCAAAGCCCACACAAGTTGGTGGCACCT
* * * * *
1268329 TTTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGAGTTAGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCC-TTTTC-CTTCAAAGCCCACACAAGTTGGTGGCACCT
* * *
1268391 TTTAGTCCTCAAAGAGCAAGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
* * * * * * *
1268451 TTTAGTCCTCAAAGAGTAGAACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGAACCC
1 TTTAGTCCTCAAAGAGCAGGACGCC-TTTTC-CTTCAAAGCCCACACAAGTTGGTGGCACCT
1268513 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC-
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTCAAAGCCCACACAAGTTGGTGGCACCT
*
1268573 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC-
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTCAAAGCCCACACAAGTTGGTGGCACCT
*
1268633 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTCAAAGCCCACACAAGTTGGTGGCACCT
* * * *
1268694 TCTAGTCTTCAAAGAGCAGGACGCCTTCTT-TTTCAAAGCCCACACAAGTTGGTGGCACTT
1 TTTAGTCCTCAAAGAGCAGGACGCCTT-TTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
* * * *
1268754 TTTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCC-TTTTC-CTTCAAAGCCCACACAAGTTGGTGGCACCT
* * *
1268816 TTTAGTCCTCAAATAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTCAAAGCCCACACAAGTTGGTGGCACCT
* ** * * *
1268877 TCTAGTCCTCAAAGAGCAAAATGCCTTCTCCTTCATAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
* * *
1268937 TCTAGTCCTCAAAGA-CGAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGC-AGGACGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
* * *** * * *
1268997 TTTGGTCCTCAAAAAGCAGGACATTTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGAC-GCCTTTTC-CTTCAAAGCCCACACAAGTTGGTGGCACCT
* *
1269059 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTCAAAGCCCACACAAGTTGGTGGCACCT
* * * * *
1269120 TCTAGTCTTCAAAGAGCAGAACGCCTTCTCTTTCAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
*
1269180 TTTAGTCCTCAATA-AGCAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAA-AGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
* * * *
1269240 TTTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCC-TTTTC-CTTCAAAGCCCACACAAGTTGGTGGCACCT
* * *
1269302 TTTAGTCATCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTCAAAGCCCACACAAGTTGGTGGCACCT
* * *
1269363 TGTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
*** *
1269423 CCGAGTCCTCAAAGAGCAAGACGC
1 TTTAGTCCTCAAAGAGCAGGACGC
1269447 ACTTCATTTC
Statistics
Matches: 985, Mismatches: 113, Indels: 42
0.86 0.10 0.04
Matches are distributed among these distances:
59 2 0.00
60 463 0.47
61 249 0.25
62 271 0.28
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (60 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
Found at i:1268708 original size:243 final size:242
Alignment explanation
Indices: 1268267--1269451 Score: 1768
Period size: 243 Copynumber: 4.9 Consensus size: 242
1268257 TTTTTAGCCC
* * * *
1268267 TTTAGTCCCCAAAGAGCAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTT
1 TTTAGTCCTCAAAGAGCAGGAC-ACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * *
1268332 AGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGAGTTAGTGGCACCCTT-TAG
65 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CCTTCTAG
* *
1268396 TCCTCAAAGAGCAAGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTC
128 TCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTC
* * * * * * * *
1268461 AAAGAGTAGAACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGAACCC
193 AAAGAGCAGGACGCC-TTCTC-CTTCAAAGCCCACACAAGTTGGTGGCACCT
* * *
1268513 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTA
1 TTTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
* * *
1268577 GTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTT-TAGTCC
66 GTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCC
* * * *
1268641 TCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCTTCAA
131 TCAAAGAGCAGGATGCCTTCTCC-TTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAA
** *
1268706 AGAGCAGGACGCCTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACTT
195 AGAGCAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
1268754 TTTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 TTTAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1268819 AGTCCTCAAATAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
65 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
** *
1268884 CTCAAAGAGCAAAATGCCTTCTCCTTCATAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAA
130 CTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAA
*
1268949 AGA-CGAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
195 AGAGC-AGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
* * **
1268997 TTTGGTCCTCAAAAAGCAGGACATTTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 TTTAGTCCTCAAAGAGCAGGACA-CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1269062 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
65 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
* * * * *
1269127 TTCAAAGAGCAGAACGCCTTCTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAA
130 CTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAA
1269192 TA-AGCAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
195 -AGAGCAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
1269240 TTTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 TTTAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1269305 AGTCATCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTGTAGTC
65 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
* *
1269370 CTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCGAGTCCTCAA
130 CTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAA
*
1269435 AGAGCAAGACGCACTTC
195 AGAGCAGGACGC-CTTC
1269452 ATTTCCTTCT
Statistics
Matches: 859, Mismatches: 69, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
241 50 0.06
242 66 0.08
243 626 0.73
244 64 0.07
245 32 0.04
246 21 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (242 bp):
TTTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
GTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCC
TCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAA
GAGCAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCT
Found at i:1269530 original size:43 final size:44
Alignment explanation
Indices: 1269427--1269688 Score: 198
Period size: 43 Copynumber: 5.8 Consensus size: 44
1269417 GCACCTCCGA
* *
1269427 GTCCTCAAAGAGCAAGACGCACTTCATTTCCTTCTTTTT-CCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTCA-TT-CTTCTTTTTCCCCTTT
* *
1269472 GTCCTCAAAGAGCAGGACGCACTTTATT-TTCTTTTTCCCCCTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTCTTCTTTTTCCCCTTT
* * *
1269515 GTCCTCAACGAGCAGGACACA-TTCCATTCCTT-TCTTTTCTCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTT-CATT-CTTCT-TTTTC-CCCTTT
* * * **
1269561 GTCCTCAAAGAGTAGGACGCACTTTATT-TTCCTTTTCTTCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTCTTCTTTTTCCCCTTT
* * *
1269604 GTACTCAAAGAGCAGGA--CATGTTCCATTC-TCTTCTTTTCTCCTTTT
1 GTCCTCAAAGAGCAGGACGCA-CTT-CATTCTTC-T-TTTTC-CCCTTT
*
1269650 GTTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTT
1 G-TCCTCAAAGAGCAGGACGCACTTCA-TT-CTTCTTTT
1269689 CCCTTCTAGT
Statistics
Matches: 169, Mismatches: 28, Indels: 37
0.72 0.12 0.16
Matches are distributed among these distances:
41 2 0.01
42 12 0.07
43 49 0.29
44 10 0.06
45 36 0.21
46 29 0.17
47 18 0.11
48 7 0.04
49 4 0.02
50 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.40
Consensus pattern (44 bp):
GTCCTCAAAGAGCAGGACGCACTTCATTCTTCTTTTTCCCCTTT
Found at i:1269578 original size:89 final size:89
Alignment explanation
Indices: 1269427--1269683 Score: 335
Period size: 89 Copynumber: 2.9 Consensus size: 89
1269417 GCACCTCCGA
* * *
1269427 GTCCTCAAAGAGCAAGACGCACTT-CATTTCC-TTCTTTT-TCCTTTTGTCCTCAAAGAGCAGGA
1 GTCCTCAAAGAGCAGGACACA-TTCCA-TTCCTTTCTTTTCTCCTTTTGTCCTCAAAGAGTAGGA
*
1269489 CGCACTTTATTTTCTTTTTCCCCCTT
64 CGCACTTTATTTTCCTTTTCCCCCTT
*
1269515 GTCCTCAACGAGCAGGACACATTCCATTCCTTTCTTTTCTCCTTTTGTCCTCAAAGAGTAGGACG
1 GTCCTCAAAGAGCAGGACACATTCCATTCCTTTCTTTTCTCCTTTTGTCCTCAAAGAGTAGGACG
** *
1269580 CACTTTATTTTCCTTTTCTTCTTT
66 CACTTTATTTTCCTTTTCCCCCTT
* **
1269604 GTACTCAAAGAGCAGGACATGTTCCATT-CTCTTCTTTTCTCCTTTTGTTCCTCAAAGAGTAGGA
1 GTCCTCAAAGAGCAGGACACATTCCATTCCT-TTCTTTTCTCCTTTTG-TCCTCAAAGAGTAGGA
*
1269668 CGCACTTCA-TTTCCTT
64 CGCACTTTATTTTCCTT
1269684 CTTTTCCCTT
Statistics
Matches: 151, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
87 6 0.04
88 29 0.19
89 92 0.61
90 24 0.16
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.39
Consensus pattern (89 bp):
GTCCTCAAAGAGCAGGACACATTCCATTCCTTTCTTTTCTCCTTTTGTCCTCAAAGAGTAGGACG
CACTTTATTTTCCTTTTCCCCCTT
Found at i:1269772 original size:41 final size:40
Alignment explanation
Indices: 1269716--1269839 Score: 106
Period size: 41 Copynumber: 3.0 Consensus size: 40
1269706 AAGAAGACAC
* *
1269716 TTTTAATTTACTTTTTCCTTTGTCTTCAAAGGGCAGGATGCA
1 TTTT-ATTTCCTTTTTCCTTAGTC-TCAAAGGGCAGGATGCA
* * **
1269758 TTTTATTTCCTTTTTTCCTTAGTCCCCAAGGAGCAGGACCCA
1 TTTTATTTCC-TTTTTCCTTAGTCTCAAAGG-GCAGGATGCA
* * *
1269800 -TTTCTTTCTCTTTTTCCTTAATCCTCAAAGAGCAGGATGC
1 TTTTATTTC-CTTTTTCCTTAGT-CTCAAAGGGCAGGATGC
1269840 CCCATTTCTT
Statistics
Matches: 65, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
41 35 0.54
42 30 0.46
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (40 bp):
TTTTATTTCCTTTTTCCTTAGTCTCAAAGGGCAGGATGCA
Found at i:1269858 original size:41 final size:40
Alignment explanation
Indices: 1269767--1269855 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 40
1269757 ATTTTATTTC
* *
1269767 CTTTTTTCCTTAGTCCCCAAGGAGCAGGACCCATTTCTTT
1 CTTTTTTCCTTAATCCCCAAAGAGCAGGACCCATTTCTTT
*
1269807 CTCTTTTTCCTTAATCCTCAAAGAGCAGGATGCCCCATTTCTTT
1 CT-TTTTTCCTTAATCCCCAAAGAGCAGGA---CCCATTTCTTT
1269851 -TTTTT
1 CTTTTT
1269856 CCTCTTCCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
40 2 0.05
41 24 0.57
42 4 0.10
43 1 0.02
44 11 0.26
ACGTcount: A:0.18, C:0.28, G:0.12, T:0.42
Consensus pattern (40 bp):
CTTTTTTCCTTAATCCCCAAAGAGCAGGACCCATTTCTTT
Found at i:1272868 original size:78 final size:79
Alignment explanation
Indices: 1272701--1272913 Score: 214
Period size: 79 Copynumber: 2.7 Consensus size: 79
1272691 AACCCTAGTT
* * * * *
1272701 TTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTTCAAGAGGATA
1 TTATTTCTAAAACATCAATTTCTCACAATCGGGGATACTCCAACCCCATTATTTTCAAGAGGATA
* * *
1272766 CTCCCACGCCGGCT
66 CTCCAACCCCGGCC
* * * ***
1272780 TTATTTCTAAAATATTAATTTCTCACAATTGGGGATACTCCAACCCCATTATTTTGGCG-GGATA
1 TTATTTCTAAAACATCAATTTCTCACAATCGGGGATACTCCAACCCCATTATTTTCAAGAGGATA
1272844 CTCCAACCCCGGCC
66 CTCCAACCCCGGCC
* * * * * *
1272858 TTATTTCTAAAGCTTCGATTT-TCCATAATCAGGGATACTCCAACCCCGATTTTTTT
1 TTATTTCTAAAACATCAATTTCT-CACAATCGGGGATACTCCAACCCC-ATTATTTT
1272914 TCCAAAACAT
Statistics
Matches: 109, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
77 1 0.01
78 53 0.49
79 55 0.50
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (79 bp):
TTATTTCTAAAACATCAATTTCTCACAATCGGGGATACTCCAACCCCATTATTTTCAAGAGGATA
CTCCAACCCCGGCC
Found at i:1272927 original size:51 final size:50
Alignment explanation
Indices: 1272837--1272948 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 50
1272827 ATTATTTTGG
* * * *
1272837 CGGGATACTCCAACCCCGGCCTTATTTCTAAAGCTTCGATTTTCCATAAT
1 CGGGATACTCCAACCCCGACCTTATTTCCAAAACATCGATTTTCCATAAT
** *
1272887 CAGGGATACTCCAACCCCGATTTTTTTTCCAAAACATCGATTTTCCATAAT
1 C-GGGATACTCCAACCCCGACCTTATTTCCAAAACATCGATTTTCCATAAT
1272938 CGAGGATACTC
1 CG-GGATACTC
1272949 TAGCCCCGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
50 2 0.04
51 51 0.96
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (50 bp):
CGGGATACTCCAACCCCGACCTTATTTCCAAAACATCGATTTTCCATAAT
Found at i:1276106 original size:28 final size:29
Alignment explanation
Indices: 1276063--1276144 Score: 98
Period size: 28 Copynumber: 2.9 Consensus size: 29
1276053 ATTGAAAAAT
* *
1276063 AAGAAAGATC-AAGGAAGTGAAATCAA-C
1 AAGAAATATCAAAGGAAATGAAATCAAGC
*
1276090 AAGAAATATGAAAGGAAATGAAAT-AAGC
1 AAGAAATATCAAAGGAAATGAAATCAAGC
* *
1276118 AAGAAATTTCAAAGGAAAAGAAATCAA
1 AAGAAATATCAAAGGAAATGAAATCAA
1276145 TAAAGAAGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 10 0.22
28 34 0.74
29 2 0.04
ACGTcount: A:0.60, C:0.07, G:0.20, T:0.13
Consensus pattern (29 bp):
AAGAAATATCAAAGGAAATGAAATCAAGC
Found at i:1277017 original size:32 final size:32
Alignment explanation
Indices: 1276981--1277082 Score: 188
Period size: 32 Copynumber: 3.2 Consensus size: 32
1276971 AGCCAAAATG
1276981 AATGATCGCCACAAGAGTCTTGGCCTCTTGAT
1 AATGATCGCCACAAGAGTCTTGGCCTCTTGAT
1277013 AATGATCGCCACAAGAGTCTTGGCCTCTTGAT
1 AATGATCGCCACAAGAGTCTTGGCCTCTTGAT
*
1277045 AATGATCGCCACAAAAGTCTTGGCCTCTTGAT
1 AATGATCGCCACAAGAGTCTTGGCCTCTTGAT
1277077 AA-GATC
1 AATGATC
1277083 TAGAAAAATT
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
31 4 0.06
32 65 0.94
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (32 bp):
AATGATCGCCACAAGAGTCTTGGCCTCTTGAT
Found at i:1279363 original size:12 final size:12
Alignment explanation
Indices: 1279330--1279406 Score: 53
Period size: 12 Copynumber: 6.9 Consensus size: 12
1279320 AAGAGAAAGA
1279330 AGAGATAGGAGG
1 AGAGATAGGAGG
*
1279342 -GATGAAAGGAGG
1 AGA-GATAGGAGG
1279354 AGAGAT---AGG
1 AGAGATAGGAGG
*
1279363 AGAGAT---AGT
1 AGAGATAGGAGG
1279372 AGAGATAGGAGG
1 AGAGATAGGAGG
*
1279384 -GATGATAGGAGA
1 AGA-GATAGGAGG
1279396 AGAGATAGGAG
1 AGAGATAGGAG
1279407 AGATAATAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
9 17 0.32
11 4 0.08
12 28 0.53
13 4 0.08
ACGTcount: A:0.43, C:0.00, G:0.45, T:0.12
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:1279376 original size:11 final size:9
Alignment explanation
Indices: 1279351--1279411 Score: 59
Period size: 9 Copynumber: 6.1 Consensus size: 9
1279341 GGATGAAAGG
1279351 AGGAGAGAT
1 AGGAGAGAT
1279360 AGGAGAGAT
1 AGGAGAGAT
*
1279369 AGTAGAGAT
1 AGGAGAGAT
1279378 AGGAGGGATGAT
1 AGGA--GA-GAT
1279390 AGGAGAAGAGAT
1 A-G-G-AGAGAT
1279402 AGGAGAGAT
1 AGGAGAGAT
1279411 A
1 A
1279412 ATAAAGAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
9 27 0.61
10 1 0.02
11 3 0.07
12 8 0.18
13 3 0.07
14 1 0.02
15 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.43, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:1279380 original size:42 final size:42
Alignment explanation
Indices: 1279321--1279439 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
1279311 TAGCCCTCAA
* *
1279321 AGAGAAAGAAGAGATAGGAGGGATGAAAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGAAAGGAGGAGAGATAGG
* *
1279363 AGAGATAGTAGAGATAGGAGGGATGATAGGAGAAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGAAAGGAGGAGAGATAGG
* * * *
1279405 AGAGATAATAAAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGATAGGAGGGATGAAAGGAGGAG
1279440 GAGAGAAGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.45, C:0.01, G:0.44, T:0.10
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGAAAGGAGGAGAGATAGG
Found at i:1284426 original size:378 final size:377
Alignment explanation
Indices: 1283719--1284473 Score: 1294
Period size: 378 Copynumber: 2.0 Consensus size: 377
1283709 AAGGAGGGGT
* *
1283719 TGATGAAACCAAGGAAGGTCCATTGAAGACAAAGACCTAAAGGCGTTGGAAGGGTTTTAAGGACC
1 TGATGAAACCAAGGAAGGTCCATTGAAGACAAAGACCTAAAGGCGTTGGAAGGATTTCAAGGACC
* * *
1283784 AATGATGAGGGCAAAGGCAAAGAAGATAAAGGAAGGCCTAGAGAAGATGGTTGCTAGCCTATTTG
66 AATAACGAGGGCAAAGGCAAAGAAGATAAAGGAAGACCTAGAGAAGATGGTTGCTAGCCTATTTG
*
1283849 AAAGTAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTAGAAGATATG
131 AAAGCAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTAGAAGATATG
* * *
1283914 GGCTCCTATGGATTAAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTTG
196 GGCACCAACGGATTAAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTTG
*
1283979 CTTTGGGCTTTATTTAGCATAAATACTTGTTATTTGGGTTTAACTAAGAGTTGGGCTTATTAGCA
261 CTTTGGGCTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAACTAAGAGTTGGGCTTATTAGCA
* * *
1284044 TAATAAGCCCCTTAGGGTTTGTGTTAACTATGGCTTTTGAGGGCATATATAA
326 TAATAAGACCCTTAGGGTTTGTGTTAACTATGACTTATGAGGGCATATATAA
*
1284096 TGATGAAAACCATGGAAGGTCCATTGAAGACAAAGACCTAAAGGCGTTGGAAGGATTTCAAGGAC
1 TGATG-AAACCAAGGAAGGTCCATTGAAGACAAAGACCTAAAGGCGTTGGAAGGATTTCAAGGAC
* *
1284161 CAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTT
65 CAATAACGAGGGCAAAGGCAAAGAAGATAAAGGAAGACCTAGAGAAGATGGTTGCTAGCCTATTT
*
1284226 GAAAGCAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATAT
130 GAAAGCAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTAGAAGATAT
* *
1284291 GGGCACCAACGGATTGAATTAGGACTTGGGTTATTTTTTAATAAAGGGCCTGCTGGTTGTGACTT
195 GGGCACCAACGGATTAAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTT
* * *
1284356 GCTTTGGGCTTTATTTTGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTGTTAGC
260 GCTTTGGGCTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAACTAAGAGTTGGGCTTATTAGC
*
1284421 ATAATAAGACCCTTAGGGTTTGTGTTATCTATGACTTATGAGGGCATATATAA
325 ATAATAAGACCCTTAGGGTTTGTGTTAACTATGACTTATGAGGGCATATATAA
1284474 GCTCTTGTAA
Statistics
Matches: 354, Mismatches: 23, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
377 5 0.01
378 349 0.99
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (377 bp):
TGATGAAACCAAGGAAGGTCCATTGAAGACAAAGACCTAAAGGCGTTGGAAGGATTTCAAGGACC
AATAACGAGGGCAAAGGCAAAGAAGATAAAGGAAGACCTAGAGAAGATGGTTGCTAGCCTATTTG
AAAGCAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTAGAAGATATG
GGCACCAACGGATTAAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTTG
CTTTGGGCTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAACTAAGAGTTGGGCTTATTAGCA
TAATAAGACCCTTAGGGTTTGTGTTAACTATGACTTATGAGGGCATATATAA
Found at i:1284954 original size:22 final size:24
Alignment explanation
Indices: 1284926--1284969 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
1284916 TTTTTTTTTC
1284926 AAGAATACAAAAA-AGA-AAAAGA
1 AAGAATACAAAAAGAGAGAAAAGA
1284948 AAGAATACAAAAAGAGAGAAAA
1 AAGAATACAAAAAGAGAGAAAA
1284970 AAAACCAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 13 0.65
23 3 0.15
24 4 0.20
ACGTcount: A:0.75, C:0.05, G:0.16, T:0.05
Consensus pattern (24 bp):
AAGAATACAAAAAGAGAGAAAAGA
Found at i:1285751 original size:24 final size:24
Alignment explanation
Indices: 1285718--1285803 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1285708 AAGAGAAAGA
*
1285718 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1285742 AGAGACAGGA--GA-GATA--A-T
1 AGAGACAGGAGGGATGATAGGAGG
*
1285760 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1285784 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1285804 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 9 0.18
19 1 0.02
20 2 0.04
21 8 0.16
22 2 0.04
23 1 0.02
24 26 0.53
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1285769 original size:18 final size:18
Alignment explanation
Indices: 1285742--1285812 Score: 61
Period size: 18 Copynumber: 3.6 Consensus size: 18
1285732 TGATAGGAGG
1285742 AGAGACAGGAGAGATAAT
1 AGAGACAGGAGAGATAAT
* *
1285760 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GATA--A-T
1285784 AGAGACAGGAGAGATAAT
1 AGAGACAGGAGAGATAAT
*
1285802 AGAGAGAGGAG
1 AGAGACAGGAG
1285813 GGATGACAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
18 19 0.45
19 1 0.02
20 2 0.05
21 8 0.19
22 2 0.05
23 1 0.02
24 9 0.21
ACGTcount: A:0.45, C:0.03, G:0.42, T:0.10
Consensus pattern (18 bp):
AGAGACAGGAGAGATAAT
Found at i:1285770 original size:42 final size:42
Alignment explanation
Indices: 1285718--1285827 Score: 193
Period size: 42 Copynumber: 2.6 Consensus size: 42
1285708 AAGAGAAAGA
1285718 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
1285760 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
* *
1285802 AGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
1285828 GAGAGAAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.43, C:0.03, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:1293117 original size:12 final size:11
Alignment explanation
Indices: 1293095--1293170 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1293085 AGAGAAAGAA
*
1293095 GAGAGAGGAGG
1 GAGATAGGAGG
1293106 GATGATAGGAGG
1 GA-GATAGGAGG
*
1293118 AGAGACAGGA--
1 -GAGATAGGAGG
*
1293128 GAGATAGTA--
1 GAGATAGGAGG
1293137 GAGATAGGAGG
1 GAGATAGGAGG
1293148 GATGATAGGAGG
1 GA-GATAGGAGG
*
1293160 AGAGACAGGAG
1 -GAGATAGGAG
1293171 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1293127 original size:24 final size:24
Alignment explanation
Indices: 1293094--1293179 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1293084 AAGAGAAAGA
*
1293094 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1293118 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1293136 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1293160 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1293180 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1293146 original size:42 final size:42
Alignment explanation
Indices: 1293085--1293203 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1293075 TAACCCTCAA
* *
1293085 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1293127 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1293169 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1293204 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1298634 original size:18 final size:18
Alignment explanation
Indices: 1298611--1298718 Score: 58
Period size: 21 Copynumber: 5.3 Consensus size: 18
1298601 ATCTTCTTCT
1298611 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
1298629 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
1298650 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
*
1298671 CTCCTATCTCTACTATC-TCTC
1 CTCC--TC-CTCCTATCATC-C
1298692 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
1298713 CTCCTC
1 CTCCTC
1298719 TCTCTTCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 32
0.66 0.04 0.30
Matches are distributed among these distances:
17 3 0.04
18 14 0.20
19 4 0.06
20 6 0.09
21 22 0.31
22 6 0.09
23 4 0.06
24 8 0.11
25 3 0.04
ACGTcount: A:0.10, C:0.48, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:1298666 original size:42 final size:42
Alignment explanation
Indices: 1298614--1298732 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
1298604 TTCTTCTCTC
*
1298614 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1298656 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1298698 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1298733 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1298673 original size:12 final size:11
Alignment explanation
Indices: 1298647--1298722 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1298637 TCTATTATCT
*
1298647 CTCCTGTCTCTC
1 CTCCTATCTC-C
1298659 CTCCTATCATCC
1 CTCCTATC-TCC
1298671 CTCCTATCT--
1 CTCCTATCTCC
*
1298680 CTACTATCT--
1 CTCCTATCTCC
*
1298689 CTCCTGTCTCTC
1 CTCCTATCTC-C
1298701 CTCCTATCATCC
1 CTCCTATC-TCC
*
1298713 CTCCTCTCTC
1 CTCCTATCTC
1298723 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1303966 original size:323 final size:320
Alignment explanation
Indices: 1303374--1304017 Score: 1121
Period size: 323 Copynumber: 2.0 Consensus size: 320
1303364 ATGAGGGCAT
*
1303374 ATATAAGCACTTGTAAACAGATTTGGAGGGGGCAGACATTCGTATTTGTAAAAAACACATTTTGT
1 ATATAAGCACTTGTAAACAGATTTGGAGGGGGCAGACATTCGTATTTGCAAAAAACACATTTTGT
1303439 GTGAGAGTGTGATTCTTAGGTTCTTGAGTGAGCCAATTTTCTGGATCTTATCAAGAGGCCAAGAC
66 GTGAGAGTGTGATTCTTAGGTTCTTGAGTGAGCCAATTTTCTGGATCTTATCAAGAGGCCAAGAC
*
1303504 TCTTGTGGTGATTATTCCTTTTGGCATATCAATCTTGTGATTGTGGCGCCATCCTTCATCTCTAA
131 TCTTGTGGTGATCATTCCTTTTGGCATATCAATCTTGTGATTGTGGCGCCATCCTTCATCTCTAA
* *
1303569 TCTATTCCATTTTGTTATTTTTTTCTGCTTCTTTCACTTTCTGTTCTTGCATTAATAATTTTGTT
196 TCTATTCCATTTTGTTATTTTTTTCTGCTTCTTTCAATTTCTGTTCTTGCATTAATAATTCTGTT
*
1303634 TAATGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGTTCATGGTTGTCATC
261 TAATGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTCATC
* *
1303694 ATATAAGCTCTTGTAAACAGATTTGGAGGGGGCAGACATT-GATATTTGCAGATTAAACACATTT
1 ATATAAGCACTTGTAAACAGATTTGGAGGGGGCAGACATTCG-TATTTGCA-A-AAAACACATTT
*
1303758 TGTGTGAGAGTGTGATTCTTAGTTTCTTGAGTGAGCCAATTATTCTGGATCTTATCAAGAGGCCA
63 TGTGTGAGAGTGTGATTCTTAGGTTCTTGAGTGAGCCAATT-TTCTGGATCTTATCAAGAGGCCA
*
1303823 AGACTCTTGTGGTGATCATTCCTTTTGGCTTATCAATCTTGTGATTGTGGCGCCATCCTTCATCT
127 AGACTCTTGTGGTGATCATTCCTTTTGGCATATCAATCTTGTGATTGTGGCGCCATCCTTCATCT
*
1303888 CTAATCTATTCCAGTTTTGTTA-TTTTTTCTGCTTCTTTCAATTTCTGTTCTTGCATTAGTAATT
192 CTAATCTATTCCA-TTTTGTTATTTTTTTCTGCTTCTTTCAATTTCTGTTCTTGCATTAATAATT
* *
1303952 CTGTTTATTGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTTATC
256 CTGTTTAATGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTCATC
1304017 A
1 A
1304018 CCAATTCCCT
Statistics
Matches: 307, Mismatches: 12, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
319 1 0.00
320 46 0.15
321 1 0.00
322 50 0.16
323 201 0.65
324 8 0.03
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (320 bp):
ATATAAGCACTTGTAAACAGATTTGGAGGGGGCAGACATTCGTATTTGCAAAAAACACATTTTGT
GTGAGAGTGTGATTCTTAGGTTCTTGAGTGAGCCAATTTTCTGGATCTTATCAAGAGGCCAAGAC
TCTTGTGGTGATCATTCCTTTTGGCATATCAATCTTGTGATTGTGGCGCCATCCTTCATCTCTAA
TCTATTCCATTTTGTTATTTTTTTCTGCTTCTTTCAATTTCTGTTCTTGCATTAATAATTCTGTT
TAATGTTAGAAATCCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTCATC
Found at i:1306457 original size:12 final size:11
Alignment explanation
Indices: 1306435--1306501 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 11
1306425 AGAGAAAGAA
*
1306435 GAGAGAGGAGG
1 GAGATAGGAGG
1306446 GATGATAGGAGG
1 GA-GATAGGAGG
*
1306458 AGAGATAGTA--
1 -GAGATAGGAGG
1306468 GAGATAGGAGG
1 GAGATAGGAGG
1306479 GATGATAGGAGG
1 GA-GATAGGAGG
*
1306491 AGAGACAGGAG
1 -GAGATAGGAG
1306502 AGATAATAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 8 0.17
11 4 0.09
12 30 0.65
13 4 0.09
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.10
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1306501 original size:42 final size:42
Alignment explanation
Indices: 1306455--1306534 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
1306445 GGATGATAGG
* * *
1306455 AGGAGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGAC
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAGAC
1306497 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1306535 GAGAGAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.41, C:0.03, G:0.46, T:0.10
Consensus pattern (42 bp):
AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAGAC
Found at i:1306505 original size:33 final size:33
Alignment explanation
Indices: 1306425--1306506 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
1306415 TAGCCCTCAA
*
1306425 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGG
* *
1306458 AGAGATAGTAGAGATAGGAGGGATGATAGGAGG
1 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGG
* *
1306491 AGAGACAGGAGAGATA
1 AGAGAAAGAAGAGATA
1306507 ATAGAGAGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.10
Consensus pattern (33 bp):
AGAGAAAGAAGAGATAGGAGGGATGATAGGAGG
Found at i:1314850 original size:24 final size:23
Alignment explanation
Indices: 1314823--1314909 Score: 69
Period size: 24 Copynumber: 4.0 Consensus size: 23
1314813 AAGAAGAGAG
1314823 AGGAGGGATGATAGGAGGAGAGGC
1 AGGAGGGATGATA-GAGGAGAGGC
* *
1314847 AGGA--GA-GAT--AGTAGAGGT
1 AGGAGGGATGATAGAGGAGAGGC
*
1314865 AGGAGGGATGATAGAAGGAGAGAC
1 AGGAGGGATGATAG-AGGAGAGGC
* *
1314889 AGGAGAGATAATAGA-GAGAGG
1 AGGAGGGATGATAGAGGAGAGG
1314910 AGGGATGACA
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 7 0.14
23 1 0.02
24 22 0.45
ACGTcount: A:0.40, C:0.02, G:0.47, T:0.10
Consensus pattern (23 bp):
AGGAGGGATGATAGAGGAGAGGC
Found at i:1314869 original size:42 final size:42
Alignment explanation
Indices: 1314817--1314926 Score: 168
Period size: 42 Copynumber: 2.6 Consensus size: 42
1314807 AAGAGAAAGA
* *
1314817 AGAGAGAGGAGGGATGATAGGAGGAGAGGCAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
1314859 AGAG-GTAGGAGGGATGATAGAAGGAGAGACAGGAGAGATAAT
1 AGAGAG-AGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
1314901 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
1314927 GAGAGAAGAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
41 1 0.02
42 59 0.97
43 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.48, T:0.09
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:1314898 original size:21 final size:20
Alignment explanation
Indices: 1314808--1314937 Score: 57
Period size: 21 Copynumber: 6.5 Consensus size: 20
1314798 TAGCCCTCAA
* *
1314808 AGAGAAAGAAGAGAGAGGAGG
1 AGAGATAGAAG-GAGAGCAGG
*
1314829 -GATGATAGGAGGAGAGGCAGG
1 AGA-GATAGAAGGAGA-GCAGG
1314850 AGAGATAGTAGAGGTAG-G-AGG
1 AGAGATAG-A-AGG-AGAGCAGG
1314871 -GATGATAGAAGGAGAGACAGG
1 AGA-GATAGAAGGAGAG-CAGG
1314892 AGAGATA-ATA-GAGAG-AGG
1 AGAGATAGA-AGGAGAGCAGG
*
1314910 AGGGAT-GACAGGAG-G-AGG
1 AGAGATAGA-AGGAGAGCAGG
1314928 AGAGA-AGAAG
1 AGAGATAGAAG
1314938 ATGGAAGAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 34
0.68 0.05 0.27
Matches are distributed among these distances:
17 2 0.02
18 22 0.25
19 7 0.08
20 15 0.17
21 31 0.36
22 5 0.06
23 3 0.03
24 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.47, T:0.08
Consensus pattern (20 bp):
AGAGATAGAAGGAGAGCAGG
Found at i:1320028 original size:12 final size:11
Alignment explanation
Indices: 1320006--1320072 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 11
1319996 AGAGAAAGAA
*
1320006 GAGAGAGGAGG
1 GAGATAGGAGG
1320017 GATGATAGGAGG
1 GA-GATAGGAGG
*
1320029 AGAGATAGTA--
1 -GAGATAGGAGG
1320039 GAGATAGGAGG
1 GAGATAGGAGG
1320050 GATGATAGGAGG
1 GA-GATAGGAGG
*
1320062 AGAGACAGGAG
1 -GAGATAGGAG
1320073 AGATAATAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 8 0.17
11 4 0.09
12 30 0.65
13 4 0.09
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.10
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1320072 original size:42 final size:42
Alignment explanation
Indices: 1320026--1320105 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
1320016 GGATGATAGG
* * *
1320026 AGGAGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGAC
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAGAC
1320068 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1320106 GAGAGAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.41, C:0.03, G:0.46, T:0.10
Consensus pattern (42 bp):
AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAGAC
Found at i:1320076 original size:33 final size:33
Alignment explanation
Indices: 1319996--1320077 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
1319986 TAGCCCTCAA
*
1319996 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGG
* *
1320029 AGAGATAGTAGAGATAGGAGGGATGATAGGAGG
1 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGG
* *
1320062 AGAGACAGGAGAGATA
1 AGAGAAAGAAGAGATA
1320078 ATAGAGAGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.10
Consensus pattern (33 bp):
AGAGAAAGAAGAGATAGGAGGGATGATAGGAGG
Found at i:1335831 original size:19 final size:18
Alignment explanation
Indices: 1335801--1335837 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
1335791 CTTCTCTTTA
1335801 TGAAGCTTGTATGAAGCT
1 TGAAGCTTGTATGAAGCT
1335819 TGAAGCTTTGTATGAAGCT
1 TGAAGC-TTGTATGAAGCT
1335838 CCCTATTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (18 bp):
TGAAGCTTGTATGAAGCT
Found at i:1336257 original size:24 final size:23
Alignment explanation
Indices: 1336188--1336264 Score: 65
Period size: 24 Copynumber: 3.5 Consensus size: 23
1336178 TATATTATCT
*
1336188 CTCCTGTCTCTCCTCCTATCAT-
1 CTCCTGTCTCTCCTCCTACCATC
* *
1336210 C-CCT-TCTAT-CT-CTACTATC
1 CTCCTGTCTCTCCTCCTACCATC
1336229 TCTCCTGTCTCTCCTCCTACCATCC
1 -CTCCTGTCTCTCCTCCTACCAT-C
*
1336254 CTCCTCTCTCT
1 CTCCTGTCTCT
1336265 TCTTTCTCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
18 5 0.12
19 2 0.05
20 5 0.12
21 6 0.14
22 5 0.12
23 2 0.05
24 16 0.38
25 1 0.02
ACGTcount: A:0.09, C:0.48, G:0.03, T:0.40
Consensus pattern (23 bp):
CTCCTGTCTCTCCTCCTACCATC
Found at i:1336264 original size:42 final size:42
Alignment explanation
Indices: 1336155--1336273 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
1336145 TTCTTCTCTC
* * *
1336155 CTCCTCCTGTCATCCCTCCTCTCTATATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1336197 CTCCTCCTATCATCCCTTCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
1336239 CTCCTCCTACCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1336274 TTGAGGGCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1339409 original size:12 final size:12
Alignment explanation
Indices: 1339379--1339446 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 12
1339369 AAGAGAAAGA
*
1339379 AGAGATAGGTGG
1 AGAGATAGGAGG
*
1339391 -GATGATAGAAGG
1 AGA-GATAGGAGG
*
1339403 AGAGAT---AGT
1 AGAGATAGGAGG
1339412 AGAGATAGGAGG
1 AGAGATAGGAGG
1339424 -GATGATAGGAGG
1 AGA-GATAGGAGG
1339436 AGAGATAGGAG
1 AGAGATAGGAG
1339447 AGATAATAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
9 8 0.18
11 4 0.09
12 29 0.64
13 4 0.09
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.15
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:1339416 original size:33 final size:33
Alignment explanation
Indices: 1339370--1339451 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
1339360 TAGCCCTCAA
* *
1339370 AGAGAAAGAAGAGATAGGTGGGATGATAGAAGG
1 AGAGATAGAAGAGATAGGAGGGATGATAGAAGG
* *
1339403 AGAGATAGTAGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGAAGAGATAGGAGGGATGATAGAAGG
*
1339436 AGAGATAGGAGAGATA
1 AGAGATAGAAGAGATA
1339452 ATAGAGAGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.44, C:0.00, G:0.43, T:0.13
Consensus pattern (33 bp):
AGAGATAGAAGAGATAGGAGGGATGATAGAAGG
Found at i:1339447 original size:42 final size:42
Alignment explanation
Indices: 1339400--1339479 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
1339390 GGATGATAGA
* * *
1339400 AGGAGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGAT
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAGAT
1339442 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1339480 GAGAGAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.41, C:0.01, G:0.46, T:0.11
Consensus pattern (42 bp):
AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAGAT
Found at i:1339455 original size:12 final size:12
Alignment explanation
Indices: 1339415--1339460 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
1339405 AGATAGTAGA
*
1339415 GATAGGAGGGAT
1 GATAGGAGAGAT
1339427 GATAGGAGGAGA-
1 GATAGGA-GAGAT
1339439 GATAGGAGAGAT
1 GATAGGAGAGAT
*
1339451 AATA-GAGAGA
1 GATAGGAGAGA
1339461 GGAGGGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:1351360 original size:42 final size:42
Alignment explanation
Indices: 1351307--1351425 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
1351297 TTCTTCTCTC
* * *
1351307 CTCCTTCTATCATCCCTCCTCTCTCTATTATCTCTGCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1351349 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
1351391 CTCCTCCTCTCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1351426 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1373366 original size:42 final size:42
Alignment explanation
Indices: 1373311--1373429 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1373301 TTCTTCTCTC
* *
1373311 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1373353 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1373395 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1373430 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1373370 original size:12 final size:11
Alignment explanation
Indices: 1373344--1373419 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1373334 TCTATTATCT
*
1373344 CTCCTGTCTCTC
1 CTCCTATCTC-C
1373356 CTCCTATCATCC
1 CTCCTATC-TCC
1373368 CTCCTATCT--
1 CTCCTATCTCC
*
1373377 CTACTATCT--
1 CTCCTATCTCC
*
1373386 CTCCTGTCTCTC
1 CTCCTATCTC-C
1373398 CTCCTATCATCC
1 CTCCTATC-TCC
*
1373410 CTCCTCTCTC
1 CTCCTATCTC
1373420 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1373371 original size:24 final size:24
Alignment explanation
Indices: 1373335--1373420 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1373325 CCTCCTCTCT
* *
1373335 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1373359 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1373380 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1373401 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1373421 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1373395 original size:18 final size:18
Alignment explanation
Indices: 1373326--1373396 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1373316 CCTGTCATCC
* *
1373326 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1373344 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1373366 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1373386 CTCCTGTCTCT
1 CTCCTGTCTCT
1373397 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1382962 original size:24 final size:23
Alignment explanation
Indices: 1382935--1383020 Score: 58
Period size: 24 Copynumber: 3.9 Consensus size: 23
1382925 GAGAAAGAAA
1382935 AGATAGGAGGGATGATAAGAGGAG
1 AGATAGGAGGGATGAT-AGAGGAG
** *
1382959 AGATA--AAAGA-GTTAGTA-GAG
1 AGATAGGAGGGATGATAG-AGGAG
1382979 --ATAGGAGGGATGATAGGAGGAG
1 AGATAGGAGGGATGATA-GAGGAG
* *
1383001 AGATAGGAGAGATAATAGAG
1 AGATAGGAGGGATGATAGAG
1383021 ACAGGAGGGA
Statistics
Matches: 46, Mismatches: 8, Indels: 17
0.65 0.11 0.24
Matches are distributed among these distances:
18 3 0.07
20 8 0.17
21 7 0.15
22 7 0.15
23 3 0.07
24 18 0.39
ACGTcount: A:0.44, C:0.00, G:0.41, T:0.15
Consensus pattern (23 bp):
AGATAGGAGGGATGATAGAGGAG
Found at i:1382981 original size:42 final size:42
Alignment explanation
Indices: 1382935--1383054 Score: 159
Period size: 42 Copynumber: 2.8 Consensus size: 42
1382925 GAGAAAGAAA
* * *
1382935 AGATAGGAGGGATGATAAGAGGAGAGATAAAAGAGTTAGTAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAAAAGAGATAATAG
**
1382977 AGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAAAAGAGATAATAG
* *
1383019 AGACAGGAGGGATGACAGGAGGAGGAGATAAGAAGA
1 AGATAGGAGGGATGATAGGAGGA-GAGATAA-AAGA
1383055 TGGAAGAGTG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 58 0.87
43 6 0.09
44 3 0.04
ACGTcount: A:0.44, C:0.02, G:0.42, T:0.12
Consensus pattern (42 bp):
AGATAGGAGGGATGATAGGAGGAGAGATAAAAGAGATAATAG
Found at i:1382995 original size:12 final size:12
Alignment explanation
Indices: 1382975--1383009 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
1382965 AAGAGTTAGT
1382975 AGAGATAGGAGG
1 AGAGATAGGAGG
1382987 -GATGATAGGAGG
1 AGA-GATAGGAGG
1382999 AGAGATAGGAG
1 AGAGATAGGAG
1383010 AGATAATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.40, C:0.00, G:0.49, T:0.11
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:1391622 original size:68 final size:68
Alignment explanation
Indices: 1391529--1391698 Score: 306
Period size: 68 Copynumber: 2.5 Consensus size: 68
1391519 CCTAATCAGA
* * *
1391529 TTATTAGAT-TGAGTGTGCTTGTTTAGTTAGGACTCTACAGGTTATTGTGTTTAGGATAGACCTT
1 TTATTAGATAGGAGAGTCCTTGTTTAGTTAGGACTCTACAGGTTATTGTGTTTAGGATAGACCTT
1391593 TCC
66 TCC
1391596 TTATTAGATAGGAGAGTCCTTGTTTAGTTAGGACTCTACAGGTTATTGTGTTTAGGATAGACCTT
1 TTATTAGATAGGAGAGTCCTTGTTTAGTTAGGACTCTACAGGTTATTGTGTTTAGGATAGACCTT
1391661 TCC
66 TCC
1391664 TTATTAGATAGGAGAGTCCTTGTTTAGTTAGGACT
1 TTATTAGATAGGAGAGTCCTTGTTTAGTTAGGACT
1391699 TTATAGATTT
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
67 9 0.09
68 90 0.91
ACGTcount: A:0.23, C:0.12, G:0.24, T:0.41
Consensus pattern (68 bp):
TTATTAGATAGGAGAGTCCTTGTTTAGTTAGGACTCTACAGGTTATTGTGTTTAGGATAGACCTT
TCC
Found at i:1396218 original size:17 final size:17
Alignment explanation
Indices: 1396173--1396220 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
1396163 ATTTATTCTC
* *
1396173 ATCTTAACTAAATATTT
1 ATCTTAAATAAATATAT
*
1396190 A-CTCAAATTAAATATAT
1 ATCTTAAA-TAAATATAT
1396207 ATCTTAAATAAATA
1 ATCTTAAATAAATA
1396221 ATACAAAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 4 0.16
17 16 0.64
18 5 0.20
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (17 bp):
ATCTTAAATAAATATAT
Found at i:1399843 original size:56 final size:56
Alignment explanation
Indices: 1399757--1399869 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
1399747 AAAATTGGGT
1399757 TTGGGAGTCTATTACACCACAAGTATCAACTAATCAAACATATCAAGATCAATCCC
1 TTGGGAGTCTATTACACCACAAGTATCAACTAATCAAACATATCAAGATCAATCCC
1399813 TTGGGAGTCTATTACACCACAAGTATCAACTAATCAAACATATCAAGATCAATCCC
1 TTGGGAGTCTATTACACCACAAGTATCAACTAATCAAACATATCAAGATCAATCCC
1399869 T
1 T
1399870 CTCATGATGC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.26
Consensus pattern (56 bp):
TTGGGAGTCTATTACACCACAAGTATCAACTAATCAAACATATCAAGATCAATCCC
Found at i:1403590 original size:12 final size:11
Alignment explanation
Indices: 1403568--1403643 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1403558 AGAGAAAGAA
*
1403568 GAGAGAGGAGG
1 GAGATAGGAGG
1403579 GATGATAGGAGG
1 GA-GATAGGAGG
*
1403591 AGAGACAGGA--
1 -GAGATAGGAGG
*
1403601 GAGATAGTA--
1 GAGATAGGAGG
1403610 GAGATAGGAGG
1 GAGATAGGAGG
1403621 GATGATAGGAGG
1 GA-GATAGGAGG
*
1403633 AGAGACAGGAG
1 -GAGATAGGAG
1403644 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1403600 original size:24 final size:24
Alignment explanation
Indices: 1403567--1403652 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1403557 AAGAGAAAGA
*
1403567 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1403591 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1403609 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1403633 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1403653 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1403619 original size:42 final size:42
Alignment explanation
Indices: 1403558--1403676 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1403548 TAGCCCTCAA
* *
1403558 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1403600 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1403642 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1403677 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1408892 original size:21 final size:21
Alignment explanation
Indices: 1408866--1408905 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1408856 AAAGACCATG
*
1408866 GATTTCATCATTAAACTTCAT
1 GATTTCAACATTAAACTTCAT
*
1408887 GATTTCAACTTTAAACTTC
1 GATTTCAACATTAAACTTC
1408906 CTAAATTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (21 bp):
GATTTCAACATTAAACTTCAT
Found at i:1409719 original size:30 final size:30
Alignment explanation
Indices: 1409678--1409740 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
1409668 TTAGGAATTA
*
1409678 TCTAAATAAATTAAAATTGAAAAGTCAAAT
1 TCTAAACAAATTAAAATTGAAAAGTCAAAT
1409708 TCTAAACAAATTAAAATTGAAAAGTCAAAT
1 TCTAAACAAATTAAAATTGAAAAGTCAAAT
1409738 TCT
1 TCT
1409741 TATTAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.30
Consensus pattern (30 bp):
TCTAAACAAATTAAAATTGAAAAGTCAAAT
Found at i:1417959 original size:165 final size:164
Alignment explanation
Indices: 1417777--1418252 Score: 421
Period size: 164 Copynumber: 2.9 Consensus size: 164
1417767 AAAACTCTTT
* * * * *
1417777 AAATATCATCATTTAATTACCATCAAATCAGTTTTGAAAAATTCCTTTTATTTTCATGAGTTATC
1 AAATATTATAATTTAATTACAAT-AAATCAATTTTGAAAAATT-CATTTATTTTCATGAGTTATC
* * * * * *
1417842 G-A-TTTTCTTTTAGAATTCCTCTTGTTTTCGAAATACGGAGTTTTCTTCTCCATAATTTTTTTA
64 GAATTTTTCCTTGA-AATT-CTCTTATTTTAGAAATACGGAGTTTTCTACTCCATAAATTTTTT-
1417905 AGGGG-ATTTTTCTTGGTTTTTAA-ATTTAAAATTCAAC
126 AGGGGAATTTTTCTTGGTTTTTAATATTTAAAATTCAAC
* * *
1417942 AAATATTATAGTTTAATT-CATATTAAATCAAATTTT-AAAAATTCATTCATTTTCATGAGTTTT
1 AAATATTATAATTTAATTACA-A-TAAATC-AATTTTGAAAAATTCATTTATTTTCATGAGTTAT
* * ** *
1418005 TGAATTTTTCCTTGAAATTTTCTTATTTTAGAAATACGGAGTTTTCTACTCTGTAAATTTTTTCG
63 CGAATTTTTCCTTGAAATTCTCTTATTTTAGAAATACGGAGTTTTCTACTCCATAAATTTTTTAG
* * * *
1418070 GGGAATTTTTTTTGGTTTTTAATTTTTAAAATTTATC
128 GGGAATTTTTCTTGGTTTTTAATATTTAAAATTCAAC
* * * * *
1418107 AAATATTATAATTTAACTCATAATAAATCATTTTTGAAAAATTCATTTATTTTCATGAATTTTTC
1 AAATATTATAATTTAA-TTACAATAAATCAATTTTGAAAAATTCATTTATTTTCATG-AGTTATC
* * * * * * ** * * *
1418172 --TTTTTTCCTTGAAATGCCCCTATTTTTGAAAAACTAAATTTTCTATTCCATAAAGGTTTTTGA
64 GAATTTTTCCTTGAAATTCTCTTATTTTAGAAATACGGAGTTTTCTACTCCATAAA--TTTTTTA
*
1418235 GGGG-ATTTTTCTCGGTTT
127 GGGGAATTTTTCTTGGTTT
1418253 AAATTTTTTA
Statistics
Matches: 251, Mismatches: 47, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
163 4 0.02
164 119 0.47
165 97 0.39
166 30 0.12
167 1 0.00
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.49
Consensus pattern (164 bp):
AAATATTATAATTTAATTACAATAAATCAATTTTGAAAAATTCATTTATTTTCATGAGTTATCGA
ATTTTTCCTTGAAATTCTCTTATTTTAGAAATACGGAGTTTTCTACTCCATAAATTTTTTAGGGG
AATTTTTCTTGGTTTTTAATATTTAAAATTCAAC
Found at i:1418051 original size:164 final size:164
Alignment explanation
Indices: 1417861--1418186 Score: 433
Period size: 164 Copynumber: 2.0 Consensus size: 164
1417851 TTAGAATTCC
* * * *
1417861 TCTTGTTTTCGAAATACGGAGTTTTCTTCTCCATAATTTTTTTAAGGGG-ATTTTTCTTGGTTTT
1 TCTTATTTTAGAAATACGGAGTTTTCTACTCCATAAATTTTTT-AGGGGAATTTTTCTTGGTTTT
* * *
1417925 TAA-ATTTAAAATTCAACAAATATTATAGTTTAATTCATATTAAATCAAATTTT-AAAAATTCAT
65 TAATATTTAAAATTCAACAAATATTATAATTTAACTCATAATAAATC-AATTTTGAAAAATTCAT
*
1417988 TCATTTTCATGAGTTTTTGAATTTTTCCTTGAAATTT
129 TCATTTTCATGAATTTTT-AATTTTTCCTTGAAATTT
** * *
1418025 TCTTATTTTAGAAATACGGAGTTTTCTACTCTGTAAATTTTTTCGGGGAATTTTTTTTGGTTTTT
1 TCTTATTTTAGAAATACGGAGTTTTCTACTCCATAAATTTTTTAGGGGAATTTTTCTTGGTTTTT
* * * * *
1418090 AATTTTTAAAATTTATCAAATATTATAATTTAACTCATAATAAATCATTTTTGAAAAATTCATTT
66 AATATTTAAAATTCAACAAATATTATAATTTAACTCATAATAAATCAATTTTGAAAAATTCATTC
**
1418155 ATTTTCATGAATTTTTCTTTTTTCCTTGAAAT
131 ATTTTCATGAATTTTTAATTTTTCCTTGAAAT
1418187 GCCCCTATTT
Statistics
Matches: 140, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
163 4 0.03
164 73 0.52
165 63 0.45
ACGTcount: A:0.30, C:0.10, G:0.09, T:0.51
Consensus pattern (164 bp):
TCTTATTTTAGAAATACGGAGTTTTCTACTCCATAAATTTTTTAGGGGAATTTTTCTTGGTTTTT
AATATTTAAAATTCAACAAATATTATAATTTAACTCATAATAAATCAATTTTGAAAAATTCATTC
ATTTTCATGAATTTTTAATTTTTCCTTGAAATTT
Found at i:1418270 original size:165 final size:165
Alignment explanation
Indices: 1417882--1418270 Score: 403
Period size: 165 Copynumber: 2.4 Consensus size: 165
1417872 AAATACGGAG
* ** * * *
1417882 TTTTCTTCTCCATAATTTTTTTAAGGGGATTTTTCTTGGTTTTTAAA--TTTAAAATTCAACAAA
1 TTTTCTACTCCATAAAGTTTTTGAGGGGATTTTTCTTGG-TTTTAAATTTTTAAAATTTATCAAA
* * * *
1417945 TATTATAGTTTAATTCATATTAAATCAAATTTTAAAAATTCATTCATTTTCATGAGTTTTTGAAT
65 TATTATAATTTAACTCATAATAAATCAAATTTTAAAAATTCATTCATTTTCATGAATTTTTGAAT
*** * * * *
1418010 TTTTCCTTGAAATTTTCTTATTTTAGAAATACGGAG
130 TTTTCCTTGAAATGCCCCTATTTTAGAAAAACGAAA
** * * * *
1418046 TTTTCTACTCTGTAAATTTTTTCG-GGGAATTTTTTTTGGTTTTTAATTTTTAAAATTTATCAAA
1 TTTTCTACTCCATAAAGTTTTT-GAGGGGATTTTTCTTGGTTTTAAATTTTTAAAATTTATCAAA
* * **
1418110 TATTATAATTTAACTCATAATAAATC-ATTTTTGAAAAATTCATTTATTTTCATGAATTTTT-CT
65 TATTATAATTTAACTCATAATAAATCAAATTTT-AAAAATTCATTCATTTTCATGAATTTTTGAA
* *
1418173 TTTTTCCTTGAAATGCCCCTATTTTTGAAAAACTAAA
129 TTTTTCCTTGAAATGCCCCTATTTTAGAAAAACGAAA
* * *
1418210 TTTTCTATTCCATAAAGGTTTTTGAGGGGATTTTTCTCGG-TTTAAATTTTTTATAATTTAT
1 TTTTCTACTCCATAAA-GTTTTTGAGGGGATTTTTCTTGGTTTTAAA-TTTTTAAAATTTAT
1418271 TTGATATTGT
Statistics
Matches: 182, Mismatches: 36, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
163 6 0.03
164 83 0.46
165 93 0.51
ACGTcount: A:0.30, C:0.10, G:0.09, T:0.51
Consensus pattern (165 bp):
TTTTCTACTCCATAAAGTTTTTGAGGGGATTTTTCTTGGTTTTAAATTTTTAAAATTTATCAAAT
ATTATAATTTAACTCATAATAAATCAAATTTTAAAAATTCATTCATTTTCATGAATTTTTGAATT
TTTCCTTGAAATGCCCCTATTTTAGAAAAACGAAA
Found at i:1419526 original size:20 final size:19
Alignment explanation
Indices: 1419480--1419534 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
1419470 TTGTATCGAT
*
1419480 ACATTGTATCGATAGATGC
1 ACATTGTATCGATACATGC
* *
1419499 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
1419518 ACAATTGTATCGATACA
1 AC-ATTGTATCGATACA
1419535 ATGTATCGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:1419541 original size:13 final size:14
Alignment explanation
Indices: 1419518--1419547 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
1419508 CGATACATGG
1419518 ACAATTGTATCGAT
1 ACAATTGTATCGAT
1419532 ACAA-TGTATCGAT
1 ACAATTGTATCGAT
1419545 ACA
1 ACA
1419548 TGCTGAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
ACAATTGTATCGAT
Found at i:1419545 original size:33 final size:32
Alignment explanation
Indices: 1419503--1419567 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
1419493 AGATGCTCAT
1419503 TGTATCGATACATG-GACAATTGTATCGATACAA
1 TGTATCGATACATGCGA-AA-TGTATCGATACAA
1419536 TGTATCGATACATGCTGAAATGTATCGATACA
1 TGTATCGATACATGC-GAAATGTATCGATACA
1419568 TAGCTTGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 26 0.87
34 2 0.07
35 2 0.07
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (32 bp):
TGTATCGATACATGCGAAATGTATCGATACAA
Found at i:1424544 original size:154 final size:153
Alignment explanation
Indices: 1424317--1425321 Score: 777
Period size: 156 Copynumber: 6.5 Consensus size: 153
1424307 TAGCTATAAT
* * * * * * * ** * *
1424317 TTTTTAAATCCTTTAGGGGTACCGGGATACCTTCACGTCAAAGGTGTCCTTTAGGGGTATTTTTG
1 TTTTTAAGTCCTTTAGGGGTATCAGG-TACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCG
* * * ** * *
1424382 TATTTTTTTAAAATCGAGTCTTAGGTTGTCACTAGGTCCACTTTTATGCCAAAAGTGGGAAGTTA
65 TAATTTTTTAAAA-CAAGTCCTAGGTTGTCACCGGGTCCACTTTTATGCCAAAGGTGGGAATTTA
1424447 GGATAGGTTCATCCCATTTCAAACC
129 GGATAGGTTCATCCCATTTCAAACC
* * * ** *
1424472 TTTTTAAGTTCTTGAGGGGTATCAGGTACTTTTACGTCGAAAGTATCCCCTAGGGATATTTTGGT
1 TTTTTAAGTCCTTTAGGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCGT
* * * **
1424537 AATTTTTTAGAACAAGTCCTAGGTTGTCACCGGGTCCACTTTAATG-CGAAGGTGGGTTTTTAGG
66 AATTTTTTAAAACAAGTCCTAGGTTGTCACCGGGTCCACTTTTATGCCAAAGGTGGGAATTTAGG
* ** *
1424601 ATAGGTTCATCCTATTGTGTTATCC
131 ATAGGTTCATCCCATT-T-CAAACC
* * *
1424626 TTTTTAAGTCCTATATGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAGAGGCATTTTCGT
1 TTTTTAAGTCCTTTAGGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCGT
* * * *** * * *
1424691 AATTTTTTAAAACTAACTCTTAAGTTGTCACCGGGTTTGCTTTTATGCCAAAGGTGGGCAGTTAT
66 AATTTTTTAAAAC-AAGTCCTAGGTTGTCACCGGGTCCACTTTTATGCCAAAGGTGGGAATTTAG
* *
1424756 GATAGGTTCATCCCATTTTAGACC
130 GATAGGTTCATCCCATTTCAAACC
* * * * *
1424780 TTTTTAAGTCCTTTAGGGGTA-CCGAGTACTTGTACGTCGAAGATATCCCTTAGGGGCATTTTCA
1 TTTTTAAGTCCTTTAGGGGTATCAG-GTACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCG
* * * * *
1424844 TAATTTTTCTAAAGCTAAGTCCTAGGTTGTCACTGGGTCCACTTTTATGTCGAAGGT-TGATATT
65 TAATTTTT-TAAAAC-AAGTCCTAGGTTGTCACCGGGTCCACTTTTATGCCAAAGGTGGGA-ATT
* * * * *
1424908 TAGGGTAGCG-TCATCCTAGTTAAAATTC
127 TAGGATAG-GTTCATCCCATTTCAAA-CC
* * * * *
1424936 TTTTTAAGTCCTTTAGGGTTGTCAGGATACTTTTACGTCGAAGGTATACTCGTTGGGGCATTTTC
1 TTTTTAAGTCCTTTAGGGGTATCAGG-TACTTTTACGTCGAAGGTAT-CCCCTAGGGGCATTTTC
* * * * ** * *
1425001 ATAATTTTTGAGAATCGAA-TCCTAAGTTGTCACCGGGTCTGCTTTTATGCCAAA-ATGGGGCAT
64 GTAATTTTTTA-AAAC-AAGTCCTAGGTTGTCACCGGGTCCACTTTTATGCCAAAGGT-GGGAAT
* **
1425064 TTAGGATAGGTTCATCCCATTTCTAGTC
126 TTAGGATAGGTTCATCCCATTTCAAACC
* * ** *
1425092 TTTTTAAGTTCTTTAGGGTTGCCAGGGTACTTTTACGTCGAAGGTATACCCAC-AAGGGCATTTT
1 TTTTTAAGTCCTTTAGGGGTATCA-GGTACTTTTACGTCGAAGGTAT-CCC-CTAGGGGCATTTT
* * * * * * * ** * * *
1425156 TGTAATTTTTTGGAACCAAGTCCTAAGTTATAATCGGGT-CTGTTTTCATGCCGAAGATGGGTAT
63 CGTAATTTTTT-AAAACAAGTCCTAGGTTGTCACCGGGTCCACTTTT-ATGCCAAAGGTGGGAAT
* * * *
1425220 TTAGGATAGTTTCACCCCCATCTGT-AATCT
126 TTAGGATAGGTTCA-TCCCAT-T-TCAAACC
* * * * * * *
1425250 TTTTTAAGTCCTTTAGGGGTATCAAGCACTTTTACATCGAAAGTATCCCTTAGAGGCATTTTCAT
1 TTTTTAAGTCCTTTAGGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCGT
1425315 AATTTTT
66 AATTTTT
1425322 CTTAAACTTA
Statistics
Matches: 676, Mismatches: 148, Indels: 51
0.77 0.17 0.06
Matches are distributed among these distances:
152 28 0.04
153 32 0.05
154 176 0.26
155 111 0.16
156 180 0.27
157 97 0.14
158 51 0.08
159 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (153 bp):
TTTTTAAGTCCTTTAGGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCGT
AATTTTTTAAAACAAGTCCTAGGTTGTCACCGGGTCCACTTTTATGCCAAAGGTGGGAATTTAGG
ATAGGTTCATCCCATTTCAAACC
Found at i:1425074 original size:312 final size:309
Alignment explanation
Indices: 1424422--1425321 Score: 919
Period size: 312 Copynumber: 2.9 Consensus size: 309
1424412 ACTAGGTCCA
* * * *
1424422 CTTTTATGCCAAAAGTGGGAAGTTAGGATAGGTTCATCCCATTTCAAACCTTTTTAAGTTCTTGA
1 CTTTTATGCCAAAAGTGGGCAGTTAGGATAGGTTCATCCCATTTTAGACCTTTTTAAGTTCTTTA
* * **
1424487 GGGGTATC-AGGTACTTTTACGTCGAA-AGTATCCCCTAGGGATATTTTGGTAATTTTTTAGAAC
66 GGGGTACCGA-GTACTTTTACGTCGAAGAGTATCCCCTAGGGACATTTTCATAATTTTTTAGAAC
* *
1424550 AAGTCCTAGGTTGTCACCGGGTCCACTTTAATGCGAAGGTGGGTTTTTAGGATAGGTTCATCCTA
130 AAGTCCTAGGTTGTCACCGGGTCCACTTTAATGCGAAGGTGGATATTTAGGATAGGTTCATCCTA
* ***
1424615 TTGTGTTATCCTTTTTAAGTCCTATATGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAGA
195 GTGTAAAATCCTTTTTAAGTCCTATATGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAGA
* * * * *
1424680 GGCATTTTCGTAATTTTTTAAAACTAACTCTTAAGTTGTCACCGGGTTTG
260 GGCATTTTCATAATTTTTGAAAACGAACTCCTAAGTTGTCACCGGGTCTG
* * *
1424730 CTTTTATGCCAAAGGTGGGCAGTTATGATAGGTTCATCCCATTTTAGACCTTTTTAAGTCCTTTA
1 CTTTTATGCCAAAAGTGGGCAGTTAGGATAGGTTCATCCCATTTTAGACCTTTTTAAGTTCTTTA
* * *
1424795 GGGGTACCGAGTACTTGTACGTCGAAGA-TATCCCTTAGGGGCATTTTCATAATTTTTCTA-AAG
66 GGGGTACCGAGTACTTTTACGTCGAAGAGTATCCCCTAGGGACATTTTCATAATTTTT-TAGAA-
* * * *
1424858 CTAAGTCCTAGGTTGTCACTGGGTCCACTTTTATGTCGAAGGTTGATATTTAGGGTAGCG-TCAT
129 C-AAGTCCTAGGTTGTCACCGGGTCCACTTTAATG-CGAAGGTGGATATTTAGGATAG-GTTCAT
* * *
1424922 CCTAGT-TAAAATTCTTTTTAAGTCCTTTA-GGGTTGTCAGGATACTTTTACGTCGAAGGTATAC
191 CCTAGTGTAAAATCCTTTTTAAGTCCTATATGGG-TATCAGG-TACTTTTACGTCGAAGGTAT-C
* * * * *
1424985 TCGTTGGGGCATTTTCATAATTTTTGAGAATCGAA-TCCTAAGTTGTCACCGGGTCTG
253 CCCTAGAGGCATTTTCATAATTTTTGA-AAACGAACTCCTAAGTTGTCACCGGGTCTG
* *
1425042 CTTTTATGCCAAAA-TGGGGCATTTAGGATAGGTTCATCCCATTTCTAG-TCTTTTTAAGTTCTT
1 CTTTTATGCCAAAAGT-GGGCAGTTAGGATAGGTTCATCCCATTT-TAGACCTTTTTAAGTTCTT
* * * * ** *
1425105 TAGGGTTGCCAGGGTACTTTTACGTCGAAG-GTATACCCACAAGGG-CATTTTTGTAATTTTTTG
64 TAGGGGTACC-GAGTACTTTTACGTCGAAGAGTAT-CCC-CTAGGGACATTTTCATAATTTTTTA
* * * * *** * * * *
1425168 GAACCAAGTCCTAAGTTATAATCGGGTCTGTTTTCATGCCGAAGATGGGTATTTAGGATAGTTTC
126 GAA-CAAGTCCTAGGTTGTCACCGGGTCCACTTTAATG-CGAAGGTGGATATTTAGGATAGGTTC
* * * * * * * * * *
1425233 ACCCCCATCTGT--AATCTTTTTTAAGTCCTTTAGGGGTATCAAGCACTTTTACATCGAAAGTAT
189 A-TCCTA-GTGTAAAATCCTTTTTAAGTCCTATATGGGTATCAGGTACTTTTACGTCGAAGGTAT
*
1425296 CCCTTAGAGGCATTTTCATAATTTTT
252 CCCCTAGAGGCATTTTCATAATTTTT
1425322 CTTAAACTTA
Statistics
Matches: 488, Mismatches: 81, Indels: 42
0.80 0.13 0.07
Matches are distributed among these distances:
308 106 0.22
309 8 0.02
310 55 0.11
311 48 0.10
312 125 0.26
313 91 0.19
314 46 0.09
315 8 0.02
316 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (309 bp):
CTTTTATGCCAAAAGTGGGCAGTTAGGATAGGTTCATCCCATTTTAGACCTTTTTAAGTTCTTTA
GGGGTACCGAGTACTTTTACGTCGAAGAGTATCCCCTAGGGACATTTTCATAATTTTTTAGAACA
AGTCCTAGGTTGTCACCGGGTCCACTTTAATGCGAAGGTGGATATTTAGGATAGGTTCATCCTAG
TGTAAAATCCTTTTTAAGTCCTATATGGGTATCAGGTACTTTTACGTCGAAGGTATCCCCTAGAG
GCATTTTCATAATTTTTGAAAACGAACTCCTAAGTTGTCACCGGGTCTG
Found at i:1429963 original size:87 final size:88
Alignment explanation
Indices: 1429840--1430000 Score: 216
Period size: 87 Copynumber: 1.8 Consensus size: 88
1429830 ATCTCACCTA
* * * * **
1429840 CATTTGCATTTTAAATGACAGTGGTATTTGCATCATTGCATATGCATCTGCCTCTTTGTTGATGC
1 CATTTGCATTTCAAATGACAGTGGCATTTGCATCATTGAATATGCATCTGCCACTTTACTGATGC
*
1429905 TTGTATTTGTATCATTTTACATG
66 CTGTATTTGTATCATTTTACATG
* * * *
1429928 CATTTGCA-TTCAGATGACATTGGCATTTGCATCATTTAATATGCATTTGCCACTTTACTGATGC
1 CATTTGCATTTCAAATGACAGTGGCATTTGCATCATTGAATATGCATCTGCCACTTTACTGATGC
1429992 CTGTATTTG
66 CTGTATTTG
1430001 CACTGTTTCA
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
87 54 0.87
88 8 0.13
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.43
Consensus pattern (88 bp):
CATTTGCATTTCAAATGACAGTGGCATTTGCATCATTGAATATGCATCTGCCACTTTACTGATGC
CTGTATTTGTATCATTTTACATG
Found at i:1430780 original size:91 final size:91
Alignment explanation
Indices: 1430494--1430924 Score: 533
Period size: 89 Copynumber: 4.8 Consensus size: 91
1430484 TTCTAGGAAA
* *
1430494 ACACATTCCCCAATCATATCCTCTTCATCCAACCACTAGATGGTATTGATGCAT--CAAAGCCTG
1 ACACATTCCCCAATCATATCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTG
*
1430557 ATTTCCTTCGGGGCAAGGTGCAGCCT
66 ATTTCCTTAGGGGCAAGGTGCAGCCT
*** *
1430583 ACACATTCCCCAATCATATCCCCTTCATCCAACCACTAGATGGTATTGATGCAT--CAAAGCTTG
1 ACACATTCCCCAATCATATCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTG
* *
1430646 ATTTCCTTAGGGGCAAGGTGTAGCCC
66 ATTTCCTTAGGGGCAAGGTGCAGCCT
* **
1430672 ACACATTCCCCAATCATATCTTTTTCATCTAACCACTAGATGGTATTGATGCATCACAAAGTTTG
1 ACACATTCCCCAATCATATCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTG
*
1430737 ATTTCTTTAGGGGCAAGGTGCAGCCT
66 ATTTCCTTAGGGGCAAGGTGCAGCCT
*
1430763 ACACATTCCTCAATCATATCTTCTTT-ATCCAACCACTAGATGGTATTGATGCATCACAAAGCCT
1 ACACATTCCCCAATCATATCTT-TTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCT
* * *
1430827 GATTTTAC-TA-GGGCAAGGAT--ATCCC
65 GA-TTTCCTTAGGGGCAAGG-TGCAGCCT
*
1430852 A-ACCATTCATTCCCAATCATACCTCTCTTT-ATCCAACCACTAGATGGTATTGATGCATCACAA
1 ACA-CATTC---CCCAATCATA--TCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAA
*
1430915 AGCCTAATTT
60 AGCCTGATTT
1430925 TTCTAGGGCA
Statistics
Matches: 307, Mismatches: 24, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
88 1 0.00
89 143 0.47
90 8 0.03
91 92 0.30
92 18 0.06
93 42 0.14
94 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (91 bp):
ACACATTCCCCAATCATATCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTG
ATTTCCTTAGGGGCAAGGTGCAGCCT
Found at i:1430795 original size:180 final size:179
Alignment explanation
Indices: 1430494--1430924 Score: 577
Period size: 180 Copynumber: 2.4 Consensus size: 179
1430484 TTCTAGGAAA
* *
1430494 ACACATTCCCCAATCATATCCTCTTCATCCAACCACTAGATGGTATTGATGCAT--CAAAGCCTG
1 ACACATTCCCCAATCATATCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTG
*
1430557 ATTTCCTTCGGGGCAAGGTGCAGCCTACACATTCCCCAATCATATCCCCTTCATCCAACCACTAG
66 ATTTCCTTAGGGGCAAGGTGCAGCCTACACATTCCCCAATCATATCCCCTTCATCCAACCACTAG
* * *
1430622 ATGGTATTGATGCAT-CAAAGCTTGA-TTTCCTTAGGGGCAAGGTGTAGCCC
131 ATGGTATTGATGCATACAAAGCCTGATTTTAC-TA-GGGCAAGG-ATAGCCC
* **
1430672 ACACATTCCCCAATCATATCTTTTTCATCTAACCACTAGATGGTATTGATGCATCACAAAGTTTG
1 ACACATTCCCCAATCATATCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTG
* * ** *
1430737 ATTTCTTTAGGGGCAAGGTGCAGCCTACACATTCCTCAATCATATCTTCTTTATCCAACCACTAG
66 ATTTCCTTAGGGGCAAGGTGCAGCCTACACATTCCCCAATCATATCCCCTTCATCCAACCACTAG
*
1430802 ATGGTATTGATGCATCACAAAGCCTGATTTTACTAGGGCAAGGATATCCC
131 ATGGTATTGATGCAT-ACAAAGCCTGATTTTACTAGGGCAAGGATAGCCC
*
1430852 A-ACCATTCATTCCCAATCATACCTCTCTTT-ATCCAACCACTAGATGGTATTGATGCATCACAA
1 ACA-CATTC---CCCAATCATA--TCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAA
*
1430915 AGCCTAATTT
60 AGCCTGATTT
1430925 TTCTAGGGCA
Statistics
Matches: 222, Mismatches: 20, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
178 51 0.23
179 1 0.00
180 92 0.41
181 8 0.04
182 11 0.05
183 14 0.06
184 39 0.18
185 6 0.03
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (179 bp):
ACACATTCCCCAATCATATCTTTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTG
ATTTCCTTAGGGGCAAGGTGCAGCCTACACATTCCCCAATCATATCCCCTTCATCCAACCACTAG
ATGGTATTGATGCATACAAAGCCTGATTTTACTAGGGCAAGGATAGCCC
Found at i:1430912 original size:93 final size:89
Alignment explanation
Indices: 1430493--1430977 Score: 444
Period size: 89 Copynumber: 5.3 Consensus size: 89
1430483 CTTCTAGGAA
* *
1430493 AACACATTCCCCAATCATATC-CTCTTCATCCAACCACTAGATGGTATTGATGCAT--CAAAGCC
1 AACACATTCCCCAATCATACCTCTCTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGCC
* *
1430555 TGA-TTTCCTTCGGGGCAAGGTGCAGCC
66 TGATTTTCC-T-AGGGCAAGGT--ACCC
* *
1430582 TACACATTCCCCAATCATATCC-C-CTTCATCCAACCACTAGATGGTATTGATGCAT--CAAAGC
1 AACACATTCCCCAATCATA-CCTCTCTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGC
*
1430643 TTGA-TTTCCTTAGGGGCAAGGTGTAGCCC
65 CTGATTTTCC-TA-GGGCAA-G-GTA-CCC
* * *
1430672 -ACACATTCCCCAATCATA--TCTTTTTCATCTAACCACTAGATGGTATTGATGCATCACAAAGT
1 AACACATTCCCCAATCATACCTCTCTTT-ATCCAACCACTAGATGGTATTGATGCATCACAAAGC
* * *
1430734 TTGA-TTTCTTTAGGGGCAAGGTGCAGCC
65 CTGATTTTC-CTA-GGGCAAGGT--ACCC
* * *
1430762 TACACATTCCTCAATCATATCT-TCTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGCC
1 AACACATTCCCCAATCATACCTCTCTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGCC
*
1430826 TGATTTTACTAGGGCAAGGATATCCC
66 TGATTTTCCTAGGGCAAGG-TA-CCC
1430852 AAC-CATTCATTCCCAATCATACCTCTCTTTATCCAACCACTAGATGGTATTGATGCATCACAAA
1 AACACATTC---CCCAATCATACCTCTCTTTATCCAACCACTAGATGGTATTGATGCATCACAAA
* *
1430916 GCCTAATTTTTCTAGGGCAAGGATATCCC
63 GCCTGATTTTCCTAGGGCAAGG-TA-CCC
1430945 AAC-CATTCATTCCCAATCATACCCCTCTCTTTA
1 AACACATTC---CCCAATCATA--CCTCTCTTTA
1430978 GGCTACTATA
Statistics
Matches: 347, Mismatches: 24, Indels: 44
0.84 0.06 0.11
Matches are distributed among these distances:
87 1 0.00
88 2 0.01
89 126 0.36
90 20 0.06
91 82 0.24
92 18 0.05
93 88 0.25
95 10 0.03
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (89 bp):
AACACATTCCCCAATCATACCTCTCTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGCC
TGATTTTCCTAGGGCAAGGTACCC
Found at i:1431294 original size:36 final size:36
Alignment explanation
Indices: 1431240--1431310 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
1431230 GTTAGGGCTT
***
1431240 GGTCAAACTCTTTCCATCCCTTGTTTGACTGTATTC
1 GGTCAAACTCTTTCCATCCCCCATTTGACTGTATTC
* *
1431276 GGTCGAACTCTTTTCATCCCCCATTTGACTGTATT
1 GGTCAAACTCTTTCCATCCCCCATTTGACTGTATT
1431311 GGTGCTAGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.17, C:0.28, G:0.14, T:0.41
Consensus pattern (36 bp):
GGTCAAACTCTTTCCATCCCCCATTTGACTGTATTC
Found at i:1431454 original size:44 final size:45
Alignment explanation
Indices: 1431391--1431816 Score: 200
Period size: 44 Copynumber: 9.7 Consensus size: 45
1431381 TTCATTTCGA
*
1431391 TTTGATGTATGGTTACCACCCTGGTCAAATTTGCCTCTC-TCTTG
1 TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCTTG
* * * * * ***
1431435 TCTGACGTATGGTTACCACCTTGGTCATA-TT-CTTTTCATTCCAA
1 TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCA-TCTTG
* * * * * * * * *
1431479 TTTGACATATGGTTACCACCTTGCTCAGATCTGCCTAT-TTCCTA
1 TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCTTG
* * * * * *
1431523 TCTGACGTATAGTTACCACCTTGGTCAGA-TT-CTTTTCAT-TTCG
1 TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCTT-G
* *
1431566 ATTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTC-TCCTA
1 -TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCTTG
* * ** * * * *
1431611 TCTGACATATGGTTACCACCCTATTCAGA-TT-CTTTTCAT-TTCAA
1 TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCTT--G
* * ** * ** *
1431655 TTTGATGTATGGCTACCTTCTTGGTCAAATCAGCCTC-CTTCTTG
1 TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCTTG
* * * * *
1431699 TCTGACGTATGGTTACCACCCTGGTTAGA-TT-CTTTTCAT-TCTG
1 TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCT-TG
* * * * *
1431742 ATTTGACGTATGGTTACAACCCTAGTTAAATTTGCCTC-CTTCCTG
1 -TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCTTG
*
1431787 TTTGACGTATGGTTACCACCATGGTCAAAT
1 TTTGACGTATGGTTACCACCCTGGTCAAAT
1431817 GATTTGCATT
Statistics
Matches: 275, Mismatches: 85, Indels: 44
0.68 0.21 0.11
Matches are distributed among these distances:
42 16 0.06
43 11 0.04
44 222 0.81
45 12 0.04
46 14 0.05
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (45 bp):
TTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCATCTTG
Found at i:1431514 original size:88 final size:88
Alignment explanation
Indices: 1431335--1431813 Score: 505
Period size: 88 Copynumber: 5.4 Consensus size: 88
1431325 GTCAAACTCT
* * * * ** * * *
1431335 CCTCTTTCCTGTTTGGCATATGGTTACCACCCCTACTTAGATTTTTTTCATTTCGATTTGATGTA
1 CCTCTCTCCTGTCTGACGTATGGTTACCA-CCCTGGTCAGATTCTTTTCATTTCGATTTGACGTA
*
1431400 TGGTTACCACCCTGGTCAAATTTG
65 TGGTTACCACCTTGGTCAAATTTG
* * * * * *
1431424 CCTCTCTCTTGTCTGACGTATGGTTACCACCTTGGTCATATTCTTTTCATTCCAATTTGACATAT
1 CCTCTCTCCTGTCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGACGTAT
* * *
1431489 GGTTACCACCTTGCTCAGATCTG
66 GGTTACCACCTTGGTCAAATTTG
* * * * *
1431512 CCTATTTCCTATCTGACGTATAGTTACCACCTTGGTCAGATTCTTTTCATTTCGATTTGACGTAT
1 CCTCTCTCCTGTCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGACGTAT
*
1431577 GGTTACCACCCTGGTCAAATTTG
66 GGTTACCACCTTGGTCAAATTTG
* * ** * *
1431600 CCTCTCTCCTATCTGACATATGGTTACCACCCTATTCAGATTCTTTTCATTTCAATTTGATGTAT
1 CCTCTCTCCTGTCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGACGTAT
* ** **
1431665 GGCTACCTTCTTGGTCAAATCAG
66 GGTTACCACCTTGGTCAAATTTG
* *
1431688 CCTC-CTTCTTGTCTGACGTATGGTTACCACCCTGGTTAGATTCTTTTCA-TTCTGATTTGACGT
1 CCTCTC-TCCTGTCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTC-GATTTGACGT
* * * *
1431751 ATGGTTACAACCCTAGTTAAATTTG
64 ATGGTTACCACCTTGGTCAAATTTG
* *
1431776 CCTC-CTTCCTGTTTGACGTATGGTTACCACCATGGTCA
1 CCTCTC-TCCTGTCTGACGTATGGTTACCACCCTGGTCA
1431814 AATGATTTGC
Statistics
Matches: 320, Mismatches: 68, Indels: 5
0.81 0.17 0.01
Matches are distributed among these distances:
87 4 0.01
88 292 0.91
89 24 0.08
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.40
Consensus pattern (88 bp):
CCTCTCTCCTGTCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTCGATTTGACGTAT
GGTTACCACCTTGGTCAAATTTG
Found at i:1431570 original size:176 final size:176
Alignment explanation
Indices: 1431373--1431813 Score: 580
Period size: 176 Copynumber: 2.5 Consensus size: 176
1431363 ACCCCTACTT
* * *
1431373 AGATTTTTTTCATTTCGATTTGATGTATGGTTACCACCCTGGTCAAATTTGCCTCTCTCTTGTCT
1 AGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCTCCTGTCT
* * *
1431438 GACGTATGGTTACCACCTTGGTCATATTCTTTTCATTCCAATTTGACATATGGTTACCACCTTGC
66 GACGTATGGTTACCACCATGGTCAGATTCTTTTCATTCCAATTTGACATATGGCTACCACCTTGC
* * * *
1431503 TCAGATCTGCCTATTTCCTATCTGACGTATAGTTACCACCTTGGTC
131 TCAAATCAGCCTACTTCCTATCTGACGTATAGTTACCACCCTGGTC
*
1431549 AGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCTCCTATCT
1 AGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCTCCTGTCT
* * ** * ** ** *
1431614 GACATATGGTTACCACCCTATTCAGATTCTTTTCATTTCAATTTGATGTATGGCTACCTTCTTGG
66 GACGTATGGTTACCACCATGGTCAGATTCTTTTCATTCCAATTTGACATATGGCTACCACCTTGC
* * * * *
1431679 TCAAATCAGCCTCCTTCTTGTCTGACGTATGGTTACCACCCTGGTT
131 TCAAATCAGCCTACTTCCTATCTGACGTATAGTTACCACCCTGGTC
* * *
1431725 AGATTCTTTTCA-TTCTGATTTGACGTATGGTTACAACCCTAGTTAAATTTGCCTC-CTTCCTGT
1 AGATTCTTTTCATTTC-GATTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTC-TCCTGT
*
1431788 TTGACGTATGGTTACCACCATGGTCA
64 CTGACGTATGGTTACCACCATGGTCA
1431814 AATGATTTGC
Statistics
Matches: 229, Mismatches: 34, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
175 4 0.02
176 225 0.98
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (176 bp):
AGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTCAAATTTGCCTCTCTCCTGTCT
GACGTATGGTTACCACCATGGTCAGATTCTTTTCATTCCAATTTGACATATGGCTACCACCTTGC
TCAAATCAGCCTACTTCCTATCTGACGTATAGTTACCACCCTGGTC
Found at i:1432026 original size:42 final size:42
Alignment explanation
Indices: 1431980--1432071 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
1431970 TTCTCTATCT
* * *
1431980 TTTGTTTGCCCATC-AGCTTACACCT-AGGAGAGTCCTTCACCC
1 TTTGTTTGCCCATCGA-CTCAAACCTGA-GAGACTCCTTCACCC
* *
1432022 TTTGTCTGCCGATCGACTCAAACCTGAGAGACTCCTTCACCC
1 TTTGTTTGCCCATCGACTCAAACCTGAGAGACTCCTTCACCC
1432064 TTTGTTTG
1 TTTGTTTG
1432072 TTTGTCAGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
42 40 0.95
43 2 0.05
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.33
Consensus pattern (42 bp):
TTTGTTTGCCCATCGACTCAAACCTGAGAGACTCCTTCACCC
Found at i:1432226 original size:84 final size:83
Alignment explanation
Indices: 1432075--1432244 Score: 180
Period size: 84 Copynumber: 2.0 Consensus size: 83
1432065 TTGTTTGTTT
* * * *** **
1432075 GTCAGCTTTGACGCGTGAGACTCTTTCACCCTTTATCTAACCTTTGGCTTTGACTCGGGAGGCTC
1 GTCAGCTTTGACCCGAGAGACTCTTTCACCCTTTATCTAACCATTGGCTCAAACTCAAGAGGCTC
* *
1432140 TTCTTGCTTTTGTCTGCTC
66 TTCAT-CTTTTGTCTGCCC
* * **
1432159 GTCAGCTTTTACCCGAGAGACTCTTTCACCCTTTATCTACCCATTGGCTCAAAC-CAAGAGATTT
1 GTCAGCTTTGACCCGAGAGACTCTTTCACCCTTTATCTAACCATTGGCTCAAACTCAAGAG-GCT
*
1432223 CTTCATCTTTTGTTTGCCC
65 CTTCATCTTTTGTCTGCCC
1432242 GTC
1 GTC
1432245 GGCTCAAACC
Statistics
Matches: 70, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
83 18 0.26
84 52 0.74
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.38
Consensus pattern (83 bp):
GTCAGCTTTGACCCGAGAGACTCTTTCACCCTTTATCTAACCATTGGCTCAAACTCAAGAGGCTC
TTCATCTTTTGTCTGCCC
Found at i:1432323 original size:42 final size:42
Alignment explanation
Indices: 1432277--1432473 Score: 155
Period size: 42 Copynumber: 4.7 Consensus size: 42
1432267 CTATCTTTTA
* * *
1432277 TCTGCCCATCGGCTTTGACCCAAGAGACTCCTTTACCCTTTG
1 TCTGCCCGTCAGCTTTGACCCGAGAGACTCCTTTACCCTTTG
* * * * *
1432319 TCTGCCCATCAACTTTGA-CCTAGAAGAC-ACTTTCACCCTTTC
1 TCTGCCCGTCAGCTTTGACCCGAG-AGACTCCTTT-ACCCTTTG
* ** * *
1432361 TCTGCCTGTCAGCTTTGACTTGGGAGACTCTTTTACCCTTTG
1 TCTGCCCGTCAGCTTTGACCCGAGAGACTCCTTTACCCTTTG
*** * * *
1432403 TCTGCCCGTCAGCTCAAACCTGAGAGACTTCTTTATCCTTTG
1 TCTGCCCGTCAGCTTTGACCCGAGAGACTCCTTTACCCTTTG
* * **
1432445 TCTGCCTGTCGGCTCAGACCCGAGAGACT
1 TCTGCCCGTCAGCTTTGACCCGAGAGACT
1432474 TCTTCACTTT
Statistics
Matches: 123, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
41 8 0.07
42 111 0.90
43 4 0.03
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (42 bp):
TCTGCCCGTCAGCTTTGACCCGAGAGACTCCTTTACCCTTTG
Found at i:1432472 original size:84 final size:83
Alignment explanation
Indices: 1432231--1432473 Score: 218
Period size: 84 Copynumber: 2.9 Consensus size: 83
1432221 TTCTTCATCT
* * * * * * **
1432231 TTTGTTTGCCCGTCGGCTCAAACCCAGGAAACTTCTCTATCTTTTATCTGCCCATCGGCTTTGAC
1 TTTGTCTGCCCGTCAGCTCAAACCTA-GAGACTTCTTTATCCTTTATCTGCCTGTCGGCTTTGAC
*
1432296 CCAAGAGACTCCTTTACCC
65 CCGAGAGACTCCTTTACCC
* * *** * * * *
1432315 TTTGTCTGCCCATCAACTTTGACCTAGAAGAC-ACTTTCACCCTTTCTCTGCCTGTCAGCTTTGA
1 TTTGTCTGCCCGTCAGCTCAAACCTAG-AGACTTCTTT-ATCCTTTATCTGCCTGTCGGCTTTGA
** * *
1432379 CTTGGGAGACTCTTTTACCC
64 CCCGAGAGACTCCTTTACCC
* **
1432399 TTTGTCTGCCCGTCAGCTCAAACCTGAGAGACTTCTTTATCCTTTGTCTGCCTGTCGGCTCAGAC
1 TTTGTCTGCCCGTCAGCTCAAACCT-AGAGACTTCTTTATCCTTTATCTGCCTGTCGGCTTTGAC
1432464 CCGAGAGACT
65 CCGAGAGACT
1432474 TCTTCACTTT
Statistics
Matches: 119, Mismatches: 36, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
83 4 0.03
84 109 0.92
85 6 0.05
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.33
Consensus pattern (83 bp):
TTTGTCTGCCCGTCAGCTCAAACCTAGAGACTTCTTTATCCTTTATCTGCCTGTCGGCTTTGACC
CGAGAGACTCCTTTACCC
Found at i:1432474 original size:42 final size:42
Alignment explanation
Indices: 1432148--1432477 Score: 141
Period size: 42 Copynumber: 7.9 Consensus size: 42
1432138 TCTTCTTGCT
* ***
1432148 TTTGTCTGCTCGTCAGCTTTTACCCGAGAGAC-TCTTTCACCC
1 TTTGTCTGCCCGTCAGCTCAAACCCGAGAGACTTCTTT-ACCC
* * * ** * * * * *
1432190 TTTATCTACCCATTGGCTCAAA-CCAAGAGATTTCTTCATCT
1 TTTGTCTGCCCGTCAGCTCAAACCCGAGAGACTTCTTTACCC
* * * * * *
1432231 TTTGTTTGCCCGTCGGCTCAAACCC-AGGAAACTTCTCTATCT
1 TTTGTCTGCCCGTCAGCTCAAACCCGA-GAGACTTCTTTACCC
* * * *** * *
1432273 TTTATCTGCCCATCGGCTTTGACCCAAGAGACTCCTTTACCC
1 TTTGTCTGCCCGTCAGCTCAAACCCGAGAGACTTCTTTACCC
* * *** * *
1432315 TTTGTCTGCCCATCAACTTTGA-CCTAGAAGAC-ACTTTCACCC
1 TTTGTCTGCCCGTCAGCTCAAACCCGAG-AGACTTCTTT-ACCC
* * *** ** *
1432357 TTTCTCTGCCTGTCAGCTTTGACTTGGGAGAC-TCTTTTACCC
1 TTTGTCTGCCCGTCAGCTCAAACCCGAGAGACTTC-TTTACCC
* *
1432399 TTTGTCTGCCCGTCAGCTCAAACCTGAGAGACTTCTTTATCC
1 TTTGTCTGCCCGTCAGCTCAAACCCGAGAGACTTCTTTACCC
* * *
1432441 TTTGTCTGCCTGTCGGCTCAGACCCGAGAGACTTCTT
1 TTTGTCTGCCCGTCAGCTCAAACCCGAGAGACTTCTT
1432478 CACTTTTTGT
Statistics
Matches: 219, Mismatches: 60, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
41 35 0.16
42 177 0.81
43 7 0.03
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.34
Consensus pattern (42 bp):
TTTGTCTGCCCGTCAGCTCAAACCCGAGAGACTTCTTTACCC
Found at i:1432680 original size:42 final size:41
Alignment explanation
Indices: 1432625--1432829 Score: 124
Period size: 41 Copynumber: 4.9 Consensus size: 41
1432615 TCGGTGACCT
* *
1432625 ATCGGCTTAGTCCTAGGTAAATTTTTTATCGTTTGTTGACTC
1 ATCGGTTTAGTCCTA-GTAAATTTTTTATCCTTTGTTGACTC
* * * * * *
1432667 ATTGGTTTAGTCCTAGTTAACTTTTTATCCCTTGTTTACTT
1 ATCGGTTTAGTCCTAGTAAATTTTTTATCCTTTGTTGACTC
* * * * *
1432708 GTCGGTTTAGTCATAAGTAAATCTTTTATCCTTTGTTAATTC
1 ATCGGTTTAGTCCT-AGTAAATTTTTTATCCTTTGTTGACTC
* * ** * * * * * *
1432750 GTCGGTTCAACCCCAATCAATTTTTCATCCCTTGTTTAC-C
1 ATCGGTTTAGTCCTAGTAAATTTTTTATCCTTTGTTGACTC
* * *
1432790 TATTGGCTTAGTCCCGAGTAAATCTTTTTATCCTTTGTTG
1 -ATCGGTTTAGT-CCTAGTAAAT-TTTTTATCCTTTGTTG
1432830 GCTTGTCGGT
Statistics
Matches: 117, Mismatches: 42, Indels: 7
0.70 0.25 0.04
Matches are distributed among these distances:
40 1 0.01
41 54 0.46
42 49 0.42
43 13 0.11
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (41 bp):
ATCGGTTTAGTCCTAGTAAATTTTTTATCCTTTGTTGACTC
Found at i:1432715 original size:41 final size:41
Alignment explanation
Indices: 1432670--1432842 Score: 100
Period size: 42 Copynumber: 4.1 Consensus size: 41
1432660 TTGACTCATT
1432670 GGTTTAGTCCTAGTTAACTTTTTATCCCTTGTTTACTTGTC
1 GGTTTAGTCCTAGTTAACTTTTTATCCCTTGTTTACTTGTC
* * * *
1432711 GGTTTAGTCATAAG-TAAATCTTTTATCCTTTG-TTAATTCGTC
1 GGTTTAGTCCT-AGTTAACT-TTTTATCCCTTGTTTACTT-GTC
* ** * * * * * *
1432753 GGTTCAACCCCAATCAA-TTTTTCATCCCTTGTTTACCTATT
1 GGTTTAGTCCTAGTTAACTTTTT-ATCCCTTGTTTACTTGTC
* * * * **
1432794 GGCTTAGTCCCGAGTAAATCTTTTTATCCTTTGTTGGCTTGTC
1 GGTTTAGT-CCTAGTTAA-CTTTTTATCCCTTGTTTACTTGTC
1432837 GGTTTA
1 GGTTTA
1432843 ACCCAAGTCA
Statistics
Matches: 93, Mismatches: 30, Indels: 16
0.67 0.22 0.12
Matches are distributed among these distances:
40 4 0.04
41 33 0.35
42 34 0.37
43 17 0.18
44 5 0.05
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (41 bp):
GGTTTAGTCCTAGTTAACTTTTTATCCCTTGTTTACTTGTC
Found at i:1432848 original size:83 final size:83
Alignment explanation
Indices: 1432688--1432853 Score: 194
Period size: 83 Copynumber: 2.0 Consensus size: 83
1432678 CCTAGTTAAC
* * * *
1432688 TTTTTATCCCTTGTTTACTTGTCGGTTTAGTCATAAGTAAATCTTTTATCCTTTGTTAATTCGTC
1 TTTTTATCCCTTGTTTACCTATCGGCTTAGTCACAAGTAAATCTTTTATCCTTTGTTAATTCGTC
1432753 GGTTCAACCCCAA-TCAA
66 GGTTCAACCCCAAGTCAA
* * * **
1432770 TTTTTCATCCCTTGTTTACCTATTGGCTTAGTCCCGAGTAAATCTTTTTATCCTTTGTTGGCTT-
1 TTTTT-ATCCCTTGTTTACCTATCGGCTTAGTCACAAGTAAATC-TTTTATCCTTTGTT-AATTC
*
1432834 GTCGGTTTAA-CCCAAGTCAA
63 GTCGGTTCAACCCCAAGTCAA
1432854 CCTTTGCATC
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
82 5 0.07
83 36 0.51
84 27 0.39
85 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.45
Consensus pattern (83 bp):
TTTTTATCCCTTGTTTACCTATCGGCTTAGTCACAAGTAAATCTTTTATCCTTTGTTAATTCGTC
GGTTCAACCCCAAGTCAA
Found at i:1434480 original size:166 final size:167
Alignment explanation
Indices: 1433915--1434503 Score: 622
Period size: 169 Copynumber: 3.6 Consensus size: 167
1433905 TTCAAACGTC
* * * * * * ** *
1433915 AAAATTCTTAAAATATTATCATTTAAATC-CTATTAATTCAGTTTTGAAAAATTCTTTTATTTT-
1 AAAATTCATCAAATATTATCATTTGATTCAC-ATTAAATCAGTTTTCAAAAATTAATTCATTTTC
* * * * * * *
1433978 ATGA-TTTATTAAATTTTT-ATT-AAACTCT-TCT-TTTTTGAAATACAGAGTTTTCTACTCCAT
65 ATGAGTTT-TTGAATTTTTCCTTGAAATTCTCTATATTTTTGAAATACAAAATTTTCTACTTCAT
* *
1434038 AAATATTTTCGAGGGGATATTTTTTGGTTTTTAATTTTT
129 AAATATTTTCGAGAGGATTTTTTTTGGTTTTTAATTTTT
* * * *
1434077 AAAATTCATCAAAGATTATTATTTGATCCACATTAAATCAGTTTTCAAAAATTCATTCATTTTCA
1 AAAATTCATCAAATATTATCATTTGATTCACATTAAATCAGTTTTCAAAAATTAATTCATTTTCA
* * * * * ***
1434142 TGAGTTTTTGAATTTTTTCCTTGAAATTTTCTTTTTTTTTTAAATATATTTTTTTCTACTTCATA
66 TGAGTTTTTGAA-TTTTTCCTTGAAATTCTCTATATTTTTGAAATACAAAATTTTCTACTTCATA
* * * * *
1434207 ATTTTTTTTTGAGAGAATTTTTCTTGGTTTTTAATTTTT
130 A-ATATTTTCGAGAGGATTTTTTTTGGTTTTTAATTTTT
* * * **
1434246 AAAAGTCATCAAATATTATCATTTAATTCACATTAAATCAGTTTTCAAAATTTTTTTCATTTTCA
1 AAAATTCATCAAATATTATCATTTGATTCACATTAAATCAGTTTTCAAAAATTAATTCATTTTCA
* **
1434311 TGAGTTTTTGAATTTTTCCTTAAAATTCTC-ATATTTTTGAAATACAAAATTTTCTACTTTGTAA
66 TGAGTTTTTGAATTTTTCCTTGAAATTCTCTATATTTTTGAAATACAAAATTTTCTACTTCATAA
*
1434375 ATATTTTCGAGAGGATTTTTTTTGGTTTTCAATTTTT
131 ATATTTTCGAGAGGATTTTTTTTGGTTTTTAATTTTT
* * * *
1434412 AAAATTCATCAAATATCATCATTTGATTCATATTAAATCCA-TTTTAAAAAATTAATTCATTGTC
1 AAAATTCATCAAATATTATCATTTGATTCACATTAAAT-CAGTTTTCAAAAATTAATTCATTTTC
*
1434476 ATGAG-TTTTGAATTTTTCTTTGAAATTC
65 ATGAGTTTTTGAATTTTTCCTTGAAATTC
1434504 CCCTTTTTTC
Statistics
Matches: 352, Mismatches: 65, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
162 50 0.14
163 9 0.03
164 8 0.02
165 23 0.07
166 93 0.26
167 29 0.08
168 41 0.12
169 99 0.28
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.51
Consensus pattern (167 bp):
AAAATTCATCAAATATTATCATTTGATTCACATTAAATCAGTTTTCAAAAATTAATTCATTTTCA
TGAGTTTTTGAATTTTTCCTTGAAATTCTCTATATTTTTGAAATACAAAATTTTCTACTTCATAA
ATATTTTCGAGAGGATTTTTTTTGGTTTTTAATTTTT
Found at i:1434663 original size:16 final size:17
Alignment explanation
Indices: 1434632--1434664 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1434622 GCAAAACTCA
*
1434632 ATTTTATTTTATTTTTT
1 ATTTTATTTGATTTTTT
1434649 ATTTT-TTTGATTTTTT
1 ATTTTATTTGATTTTTT
1434665 TACATGTGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
ATTTTATTTGATTTTTT
Found at i:1434816 original size:14 final size:15
Alignment explanation
Indices: 1434799--1434828 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
1434789 AAATTTTATC
1434799 TTAATTTTTA-AATT
1 TTAATTTTTACAATT
1434813 TTAATTTTTACAATT
1 TTAATTTTTACAATT
1434828 T
1 T
1434829 AATCTTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TTAATTTTTACAATT
Found at i:1435370 original size:22 final size:21
Alignment explanation
Indices: 1435342--1435389 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 21
1435332 CAAAACCAAC
*
1435342 AGCAATGGTAGCAGCTGAAGCA
1 AGCAATGGCAGCAGCTGAAG-A
1435364 AGCAATGGCAGCAGCTGAAGA
1 AGCAATGGCAGCAGCTGAAGA
1435385 AGCAA
1 AGCAA
1435390 GAAATGGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.40, C:0.19, G:0.31, T:0.10
Consensus pattern (21 bp):
AGCAATGGCAGCAGCTGAAGA
Found at i:1435561 original size:31 final size:31
Alignment explanation
Indices: 1435526--1435592 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
1435516 ACAACAATGG
* * *
1435526 GAGCAATAAAGATAGCAACAAACAGCAGCAC
1 GAGCAACAAAGATAGCAACAAACAACAACAC
* *
1435557 GAGCAGCAAAGATAGTAACAAACAACAACAC
1 GAGCAACAAAGATAGCAACAAACAACAACAC
1435588 GAGCA
1 GAGCA
1435593 GCAAGCACGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.22, G:0.19, T:0.06
Consensus pattern (31 bp):
GAGCAACAAAGATAGCAACAAACAACAACAC
Found at i:1435593 original size:31 final size:31
Alignment explanation
Indices: 1435533--1435596 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
1435523 TGGGAGCAAT
* *
1435533 AAAGATAGCAACAAACAGCAGCACGAGCAGC
1 AAAGATAGCAACAAACAACAACACGAGCAGC
*
1435564 AAAGATAGTAACAAACAACAACACGAGCAGC
1 AAAGATAGCAACAAACAACAACACGAGCAGC
1435595 AA
1 AA
1435597 GCACGAACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.53, C:0.23, G:0.19, T:0.05
Consensus pattern (31 bp):
AAAGATAGCAACAAACAACAACACGAGCAGC
Found at i:1435705 original size:23 final size:23
Alignment explanation
Indices: 1435670--1435738 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
1435660 GCAAGTAAAA
*
1435670 AGCAGCAGGAAACAGCAAGCAAT
1 AGCAGCAGCAAACAGCAAGCAAT
* * *
1435693 AGCAGTAGCAAACAACAAGCAAA
1 AGCAGCAGCAAACAGCAAGCAAT
* * *
1435716 AGCAACAGCAAATAGCAAACAAT
1 AGCAGCAGCAAACAGCAAGCAAT
1435739 CAAACACAAA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.54, C:0.22, G:0.19, T:0.06
Consensus pattern (23 bp):
AGCAGCAGCAAACAGCAAGCAAT
Found at i:1437806 original size:155 final size:154
Alignment explanation
Indices: 1437451--1437965 Score: 409
Period size: 154 Copynumber: 3.3 Consensus size: 154
1437441 AGCTATATCA
* * * * * * ** *
1437451 TTTTTAAGTCCTTTAGGGGTACCGAGATACTT-TCACGACAAAGGT-GCCCCTAGGGGTATTTTC
1 TTTTTAAGTCCTATAGGGGCACCG-GGTACTTGT-ACGTCGAAGGTATCCCCTAGGGACATTTTG
* * * * * * * * *
1437514 GTAATTTTTTACAA-TCGAGTCTTAGGTTGTCACTAGGTCCACTTTT-ATGCCAAAGATGGGAAG
64 GTAATTTTTTAGAACT-AACTCCTAAGTTGTCACCAGGTCC-GTTTTAATGCCAAAGGTGGGCAG
* * *
1437577 TTAGGACAGGTTCATCCCATTACAAACC
127 TTAGGATAGGTTCATCCCATTTCAAATC
* ** * * ** *
1437605 TTTTTAAGT--TATTGAGGGGTATTGAGTACTTTTATATCGAAGGTATCCCTTAGGGACATTTTG
1 TTTTTAAGTCCTA-T-AGGGGCACCGGGTACTTGTACGTCGAAGGTATCCCCTAGGGACATTTTG
* ** ** * *
1437668 GT-ATTTTTCTAGAACTAAGTCCTAAGTTGTCACTGGGTCCGTTTTAATGCTGAAGGT-GGTATT
64 GTAATTTTT-TAGAACTAACTCCTAAGTTGTCACCAGGTCCGTTTTAATGCCAAAGGTGGGCAGT
***
1437731 TAGGATAGGTTCATCCCATTGTGTTATCC
128 TAGGATAGGTTCATCCCATT-TCAAAT-C
* * * * *
1437760 TTTTTAAGTCCTATAGGGGCATCGGGTACTT-TCACGTCGAAAGTATCCCCTGGGGGCATTTTTG
1 TTTTTAAGTCCTATAGGGGCACCGGGTACTTGT-ACGTCGAAGGTATCCCCTAGGGACATTTTGG
* * *
1437824 TAATTTTTTAGAACTAACTCCTAAGTTGTTACCAGGTCTGTTTTTATGCCAAAGGTGGGCAGTTA
65 TAATTTTTTAGAACTAACTCCTAAGTTGTCACCAGGTCCGTTTTAATGCCAAAGGTGGGCAGTTA
* *
1437889 GGATAGGTTCATCTCATTTCAAATG
130 GGATAGGTTCATCCCATTTCAAATC
* * *
1437914 TTTTTAAGTCCTTTAGGGGTACCGGGTACTTGTATGTCGAAGGTATCCCCTA
1 TTTTTAAGTCCTATAGGGGCACCGGGTACTTGTACGTCGAAGGTATCCCCTA
1437966 AAGGTATTTT
Statistics
Matches: 284, Mismatches: 62, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
152 1 0.00
153 46 0.16
154 111 0.39
155 94 0.33
156 30 0.11
157 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (154 bp):
TTTTTAAGTCCTATAGGGGCACCGGGTACTTGTACGTCGAAGGTATCCCCTAGGGACATTTTGGT
AATTTTTTAGAACTAACTCCTAAGTTGTCACCAGGTCCGTTTTAATGCCAAAGGTGGGCAGTTAG
GATAGGTTCATCCCATTTCAAATC
Found at i:1437975 original size:154 final size:154
Alignment explanation
Indices: 1437451--1438445 Score: 622
Period size: 155 Copynumber: 6.5 Consensus size: 154
1437441 AGCTATATCA
* * * * * *
1437451 TTTTTAAGTCCTTTAGGGGTACCGAGATACTTTCACGACAAAGGT-GCCCCTAGGGGTATTTTCG
1 TTTTTAAGTCCTTTAGGGGTACCG-GGTACTTT-ACGTCGAAGGTATCCCCTAAGGGCATTTTCG
* * * * * * *
1437515 TAATTTTTTACAA-TCGAGTCTTAGGTTGTCACTAGGTCCACTTTTATGCCAAAGATGGGAAGTT
64 TAATTTTTTAGAACTCAAGTCCTAAGTTGTCACTAGGTCCGCTTTTATGCCAAAGGTGGGTAGTT
* * *
1437579 AGGACAGGTTCATCCCATTACAAACC
129 AGGATAGGTTCATCCCATTTCAAATC
** * ** * ** * *
1437605 TTTTTAAGTTATTGAGGGGTATTGAGTACTTTTATATCGAAGGTAT-CCCTTAGGGACATTTTGG
1 TTTTTAAGTCCTTTAGGGGTACCGGGTAC-TTTACGTCGAAGGTATCCCCTAAGGG-CATTTTCG
* ** *
1437669 T-ATTTTTCTAGAACT-AAGTCCTAAGTTGTCACTGGGTCCG-TTTTAATGCTGAAGGT-GGTAT
64 TAATTTTT-TAGAACTCAAGTCCTAAGTTGTCACTAGGTCCGCTTTT-ATGCCAAAGGTGGGTAG
***
1437730 TTAGGATAGGTTCATCCCATTGTGTTATCC
127 TTAGGATAGGTTCATCCCATT-TCAAAT-C
* * * * ** *
1437760 TTTTTAAGTCCTATAGGGGCATCGGGTACTTTCACGTCGAAAGTATCCCCTGGGGGCATTTTTGT
1 TTTTTAAGTCCTTTAGGGGTACCGGGTACTTT-ACGTCGAAGGTATCCCCTAAGGGCATTTTCGT
* * * * * *
1437825 AATTTTTTAGAACT-AACTCCTAAGTTGTTACCAGGTCTGTTTTTATGCCAAAGGTGGGCAGTTA
65 AATTTTTTAGAACTCAAGTCCTAAGTTGTCACTAGGTCCGCTTTTATGCCAAAGGTGGGTAGTTA
* *
1437889 GGATAGGTTCATCTCATTTCAAATG
130 GGATAGGTTCATCCCATTTCAAATC
* * * *
1437914 TTTTTAAGTCCTTTAGGGGTACCGGGTACTTGTATGTCGAAGGTATCCCCTAAAGGTATTTTCAT
1 TTTTTAAGTCCTTTAGGGGTACCGGGTACTT-TACGTCGAAGGTATCCCCTAAGGGCATTTTCGT
* * * * * * * *
1437979 AATTTTTTTA-TAGTCGAGTCCT-AGATTGTCACTGGGTCTGCTTTTATGCCAAAGGTTGATATT
65 AA-TTTTTTAGAACTCAAGTCCTAAG-TTGTCACTAGGTCCGCTTTTATGCCAAAGGTGGGTAGT
* * *
1438042 TAGGGTAGGTTCATCCCAGTTAAAATTC
128 TAGGATAGGTTCATCCCATTTCAAA-TC
* * * * **
1438070 TTTTTAAGTCCTTTAGGGTTGCCAGGATACTTTTACGTCGAAGGTGTACCTATAAGGGCATTTTC
1 TTTTTAAGTCCTTTAGGGGTACC-GGGTAC-TTTACGTCGAAGGTAT-CCCCTAAGGGCATTTTC
* * * * * * * ** * *
1438135 GTAATTTTTTA-AAATCTATTCCTAGGTTATCACTGGGCCCAG-TTTTATGCTGAAGGGGGGCA-
63 GTAATTTTTTAGAACTCAAGTCCTAAGTTGTCACTAGGTCC-GCTTTTATGCCAAAGGTGGGTAG
* * *
1438197 TT----TAGG---ATCACATCT-ATAGTC
127 TTAGGATAGGTTCATCCCATTTCA-AATC
* * * * *
1438218 TTTTTAAGTCTTTTAGGATTGT-CAGGGTACTTTTACGTCGAAGGTATATCCGTAAGGGCATTTT
1 TTTTTAAGTCCTTTAGG--GGTACCGGGTAC-TTTACGTCGAAGGTAT-CCCCTAAGGGCATTTT
* * * * * * * *
1438282 TGTAA-TTTTTGGAAC-CAAGTCCTAAGTTGTCAATAGATCTGCTTTCATGCCGAAGGTGGGTAT
62 CGTAATTTTTTAGAACTCAAGTCCTAAGTTGTCACTAGGTCCGCTTTTATGCCAAAGGTGGGTAG
* *
1438345 TTAGGATA-GTATCACCCCATCT-ATAATC
127 TTAGGATAGGT-TCATCCCATTTCA-AATC
* ** * * *
1438373 TTTTTTAAGTCCTTTAGGGGTATCAAGCACTTTTACATCGAAGGTATCTCCT-AGAGGCATTTTC
1 -TTTTTAAGTCCTTTAGGGGTACCGGGTAC-TTTACGTCGAAGGTATCCCCTAAG-GGCATTTTC
1438437 GTAATTTTT
63 GTAATTTTT
1438446 CTTAAACTTA
Statistics
Matches: 644, Mismatches: 156, Indels: 81
0.73 0.18 0.09
Matches are distributed among these distances:
146 1 0.00
147 37 0.06
148 62 0.10
149 8 0.01
150 1 0.00
151 1 0.00
152 6 0.01
153 52 0.08
154 139 0.22
155 180 0.28
156 80 0.12
157 57 0.09
158 20 0.03
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.38
Consensus pattern (154 bp):
TTTTTAAGTCCTTTAGGGGTACCGGGTACTTTACGTCGAAGGTATCCCCTAAGGGCATTTTCGTA
ATTTTTTAGAACTCAAGTCCTAAGTTGTCACTAGGTCCGCTTTTATGCCAAAGGTGGGTAGTTAG
GATAGGTTCATCCCATTTCAAATC
Found at i:1440817 original size:12 final size:11
Alignment explanation
Indices: 1440788--1440844 Score: 57
Period size: 10 Copynumber: 5.4 Consensus size: 11
1440778 ATTTTAACTA
*
1440788 TTTTTC-CTAT
1 TTTTTCTCTTT
*
1440798 TTTTTCT-TGT
1 TTTTTCTCTTT
1440808 TTTTTCTCTTT
1 TTTTTCTCTTT
1440819 TTCTTTCT-TTT
1 TT-TTTCTCTTT
*
1440830 TTTCTCTCTTT
1 TTTTTCTCTTT
1440841 TTTT
1 TTTT
1440845 GTTGAGTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 19 0.49
11 15 0.38
12 5 0.13
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTTCTCTTT
Found at i:1440832 original size:22 final size:21
Alignment explanation
Indices: 1440788--1440844 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
1440778 ATTTTAACTA
*
1440788 TTTTTC-CTATTTTTTCTTGT
1 TTTTTCTCTTTTTTTTCTTGT
1440808 TTTTTCTCTTTTTCTTTCTT-T
1 TTTTTCTCTTTTT-TTTCTTGT
1440829 TTTTCTCTCTTTTTTT
1 TTTT-TCTCTTTTTTT
1440845 GTTGAGTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 6 0.18
21 12 0.36
22 15 0.45
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (21 bp):
TTTTTCTCTTTTTTTTCTTGT
Found at i:1441322 original size:19 final size:20
Alignment explanation
Indices: 1441300--1441350 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
1441290 TCAATTTTTT
**
1441300 GAAAATAA-GAAAATTTCAA
1 GAAAATAATGAAAAACTCAA
*
1441319 GAAAA-AATGAAAAACTCAT
1 GAAAATAATGAAAAACTCAA
1441338 GAAAATAAATGAA
1 GAAAAT-AATGAA
1441351 TTTTTGAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 2 0.08
19 18 0.69
21 6 0.23
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (20 bp):
GAAAATAATGAAAAACTCAA
Found at i:1441368 original size:166 final size:153
Alignment explanation
Indices: 1441174--1441783 Score: 441
Period size: 154 Copynumber: 3.9 Consensus size: 153
1441164 AAATTCAAGG
* * * *
1441174 AATAAATTGAATTTCTCAAAATTGATTTAATGA-GAGTTTAATAATAATATTAGATGAATTTTAA
1 AATAAA-TGAATTTTTGAAAACTGATTTAAT-ATGA-TTTAATAATAATATTTGATGAATTTTAA
** * * * **
1441238 AAATTTTAAAGAGAAG-AAAATCCTCCTCGAAAATATTTATGGAATAGAAAATTCAATTTTTTGA
63 AAATTAAAAAGA-AAGAAAAATCC-CCCCGAAAACATTTATGGAATAGAAAACTCAA-TTTCAGA
1441302 AAATA-AGAAAATTTCAAGAAAAAATGAAAAACTCATGAA
125 AAA-AGAG-AAATTTCAAG----AA--AAAAA-TCA--AA
*
1441341 AATAAATGAATTTTTGAAAACTGATTTAATATGAATTATATAATAATATTTGATGAATTTTAAAA
1 AATAAATGAATTTTTGAAAACTGATTTAATATGATTTA-ATAATAATATTTGATGAATTTTAAAA
* * * * *
1441406 ATTAAAAATAAAGAAAAATCCCCCCGAAAACATTTATTGAGTAGAAAACTCTATTTCAGAAACAG
65 ATTAAAAAGAAAGAAAAATCCCCCCGAAAACATTTATGGAATAGAAAACTCAATTTCAGAAAAAG
*
1441471 AGAAATTTCAAGAAAAAAATGAAA
130 AGAAATTTCAAGAAAAAAATCAAA
* * *
1441495 AATAAATGAATTTTTGAAAACTAATTTAATATAAATTAAATAATAATATTTGATGAATTTTAAAA
1 AATAAATGAATTTTTGAAAACTGATTTAATAT-GATTTAATAATAATATTTGATGAATTTTAAAA
* ** * * * * * *** * **
1441560 ATGAAAAACTAAGAAAAATCACTCTGAAAACATTTACGGAGTAGAGAAAAGGGAAATTTTA-AGG
65 ATTAAAAAGAAAGAAAAATCCCCCCGAAAACATTTATGGA--ATAGAAAA-CTCAATTTCAGAAA
* *
1441624 AA-A-AAA--T-AA-AAAAACTTAT-GAA
127 AAGAGAAATTTCAAGAAAAA--AATCAAA
* * *
1441646 AATGAATGAATTTTTGAAAATTGATTTAATATGAATTAAATAATAATAATTTGATGAATTTTAAA
1 AATAAATGAATTTTTGAAAACTGATTTAATATG-ATTTAATAATAAT-ATTTGATGAATTTTAAA
** * * * * * * *
1441711 AATTAAAAACCAAGAAAAATCTCCTCGAAAATAGTTACGGAGTAGAAAACTCCATATTTCAAAAA
64 AATTAAAAAGAAAGAAAAATCCCCCCGAAAACATTTATGGAATAGAAAACT-CA-ATTTC-AGAA
1441776 AAAGAGAA
126 AAAGAGAA
1441784 TTCTAAAAGA
Statistics
Matches: 363, Mismatches: 62, Indels: 48
0.77 0.13 0.10
Matches are distributed among these distances:
150 12 0.03
151 50 0.14
152 54 0.15
153 3 0.01
154 95 0.26
155 6 0.02
156 10 0.03
157 10 0.03
159 2 0.01
163 11 0.03
164 9 0.02
165 33 0.09
166 62 0.17
167 6 0.02
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.30
Consensus pattern (153 bp):
AATAAATGAATTTTTGAAAACTGATTTAATATGATTTAATAATAATATTTGATGAATTTTAAAAA
TTAAAAAGAAAGAAAAATCCCCCCGAAAACATTTATGGAATAGAAAACTCAATTTCAGAAAAAGA
GAAATTTCAAGAAAAAAATCAAA
Found at i:1441509 original size:154 final size:146
Alignment explanation
Indices: 1441312--1441778 Score: 494
Period size: 154 Copynumber: 3.1 Consensus size: 146
1441302 AAATAAGAAA
* *
1441312 ATTTCAAG-AAAAAAT-GAAAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGA
1 ATTTCAAGAAAAAAATAAAAAAAC-AATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGA
* *
1441375 ATTATATAATAATATTTGATGAATTTTAAAAATTAAAAATAAAGAAAAATCCCCCCGAAAACATT
65 ATTAAATAATAATATTTGATGAATTTTAAAAATTAAAAAT-AAGAAAAATCACCCCGAAAACATT
**
1441440 TATTGAGTAGAAAACTCT
129 TACGGAGTAGAAAACTCT
*
1441458 ATTTC-AGAAACAGAGAAATTTCAAGAAAAA-AATGAAAAATAAATGAATTTTTGAAAACTAATT
1 ATTTCAAG-AA-A-A-AAA--T-AA-AAAAACAATG-AAAATAAATGAATTTTTGAAAACTGATT
* * * *
1441521 TAATATAAATTAAATAATAATATTTGATGAATTTTAAAAATGAAAAACTAAGAAAAATCACTCTG
57 TAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTAAAAA-TAAGAAAAATCACCCCG
****
1441586 AAAACATTTACGGAGTAGAGAAAAGGGAA
121 AAAACATTTACGGAGT--AGAAAA-CTCT
* * * * *
1441615 ATTTTAAGGAAAAAATAAAAAAACTTATGAAAATGAATGAATTTTTGAAAATTGATTTAATATGA
1 ATTTCAAGAAAAAAATAAAAAAAC-AATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGA
* * * * *
1441680 ATTAAATAATAATAATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCTCCTCGAAAATAG
65 ATTAAATAATAAT-ATTTGATGAATTTTAAAAATTAAAAA-TAAGAAAAATCACCCCGAAAACAT
1441745 TTACGGAGTAGAAAACTCCAT
128 TTACGGAGTAGAAAACT-C-T
1441766 ATTTCAA-AAAAAA
1 ATTTCAAGAAAAAA
1441779 GAGAATTCTA
Statistics
Matches: 264, Mismatches: 36, Indels: 38
0.78 0.11 0.11
Matches are distributed among these distances:
145 2 0.01
146 5 0.02
147 1 0.00
148 1 0.00
149 1 0.00
150 19 0.07
151 53 0.20
152 57 0.22
153 3 0.01
154 101 0.38
155 7 0.03
156 7 0.03
157 5 0.02
158 2 0.01
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.29
Consensus pattern (146 bp):
ATTTCAAGAAAAAAATAAAAAAACAATGAAAATAAATGAATTTTTGAAAACTGATTTAATATGAA
TTAAATAATAATATTTGATGAATTTTAAAAATTAAAAATAAGAAAAATCACCCCGAAAACATTTA
CGGAGTAGAAAACTCT
Found at i:1443522 original size:13 final size:13
Alignment explanation
Indices: 1443504--1443530 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1443494 ACATTATGCT
1443504 TTGTATCGATACA
1 TTGTATCGATACA
1443517 TTGTATCGATACA
1 TTGTATCGATACA
1443530 T
1 T
1443531 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1443560 original size:20 final size:19
Alignment explanation
Indices: 1443514--1443570 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
1443504 TTGTATCGAT
1443514 ACATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
* *
1443533 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
1443552 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1443571 AGATTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:1443625 original size:20 final size:20
Alignment explanation
Indices: 1443600--1443665 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
1443590 TATCACTATT
1443600 TGTATCGATACATGGTACAA
1 TGTATCGATACATGGTACAA
1443620 TGTATCGATACA---T----
1 TGTATCGATACATGGTACAA
1443633 TGTATCGATACATGGTACAA
1 TGTATCGATACATGGTACAA
1443653 TGTATCGATACAT
1 TGTATCGATACAT
1443666 TGTATCGATA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.31
16 1 0.03
17 1 0.03
20 25 0.64
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATGGTACAA
Found at i:1443636 original size:13 final size:13
Alignment explanation
Indices: 1443615--1443701 Score: 70
Period size: 13 Copynumber: 7.5 Consensus size: 13
1443605 CGATACATGG
*
1443615 TACAATGTATCGA
1 TACATTGTATCGA
1443628 TACATTGTATCGA
1 TACATTGTATCGA
1443641 TACA-TG----G-
1 TACATTGTATCGA
*
1443648 TACAATGTATCGA
1 TACATTGTATCGA
1443661 TACATTGTATCGA
1 TACATTGTATCGA
*
1443674 TACA-TG-A-GGA
1 TACATTGTATCGA
1443684 -A-ATTGTATCGA
1 TACATTGTATCGA
1443695 TACATTG
1 TACATTG
1443702 CTTGTAATGG
Statistics
Matches: 59, Mismatches: 4, Indels: 22
0.69 0.05 0.26
Matches are distributed among these distances:
7 4 0.07
8 4 0.07
9 3 0.05
10 3 0.05
11 3 0.05
12 6 0.10
13 36 0.61
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:1443641 original size:33 final size:33
Alignment explanation
Indices: 1443599--1443701 Score: 172
Period size: 33 Copynumber: 3.1 Consensus size: 33
1443589 CTATCACTAT
1443599 TTGTATCGATACATGGTACAATGTATCGATACA
1 TTGTATCGATACATGGTACAATGTATCGATACA
1443632 TTGTATCGATACATGGTACAATGTATCGATACA
1 TTGTATCGATACATGGTACAATGTATCGATACA
*
1443665 TTGTATCGATACATGAGGA-AATTGTATCGATACA
1 TTGTATCGATACATG-GTACAA-TGTATCGATACA
1443699 TTG
1 TTG
1443702 CTTGTAATGG
Statistics
Matches: 67, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
33 50 0.75
34 17 0.25
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATGGTACAATGTATCGATACA
Found at i:1452362 original size:16 final size:16
Alignment explanation
Indices: 1452341--1452393 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
1452331 TGTATCGATA
1452341 CATTGTATTACATGCT
1 CATTGTATTACATGCT
*
1452357 CATTGTA-T-CGAT--A
1 CATTGTATTAC-ATGCT
1452370 CATTGTATTACATGCT
1 CATTGTATTACATGCT
1452386 CATTGTAT
1 CATTGTAT
1452394 CGATACATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
13 7 0.23
14 4 0.13
15 4 0.13
16 15 0.50
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.43
Consensus pattern (16 bp):
CATTGTATTACATGCT
Found at i:1452373 original size:29 final size:29
Alignment explanation
Indices: 1452331--1452401 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
1452321 CACACTCAGA
1452331 TGTATCGATACATTGTATTACATGCTCAT
1 TGTATCGATACATTGTATTACATGCTCAT
1452360 TGTATCGATACATTGTATTACATGCTCAT
1 TGTATCGATACATTGTATTACATGCTCAT
1452389 TGTATCGATACAT
1 TGTATCGATACAT
1452402 GGATAATTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (29 bp):
TGTATCGATACATTGTATTACATGCTCAT
Found at i:1452456 original size:43 final size:43
Alignment explanation
Indices: 1452408--1452508 Score: 184
Period size: 43 Copynumber: 2.3 Consensus size: 43
1452398 ACATGGATAA
*
1452408 TTGTATCGATACATGAGATTGGTAGTAGCTACCCTATCACTAT
1 TTGTATCGATACATGAGATTGGCAGTAGCTACCCTATCACTAT
*
1452451 TTGTATTGATACATGAGATTGGCAGTAGCTACCCTATCACTAT
1 TTGTATCGATACATGAGATTGGCAGTAGCTACCCTATCACTAT
1452494 TTGTATCGATACATG
1 TTGTATCGATACATG
1452509 GTACAATGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (43 bp):
TTGTATCGATACATGAGATTGGCAGTAGCTACCCTATCACTAT
Found at i:1452531 original size:13 final size:13
Alignment explanation
Indices: 1452510--1452542 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
1452500 CGATACATGG
*
1452510 TACAATGTATCGA
1 TACATTGTATCGA
1452523 TACATTGTATCGA
1 TACATTGTATCGA
1452536 TACATTG
1 TACATTG
1452543 CTTGTAACGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:1455087 original size:21 final size:22
Alignment explanation
Indices: 1455058--1455103 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
1455048 GTGCTTTATT
1455058 AAATGAAAAAGAAAAAAATCAA
1 AAATGAAAAAGAAAAAAATCAA
** *
1455080 AAAT-AAAATTAAAAAAATGAA
1 AAATGAAAAAGAAAAAAATCAA
1455101 AAA
1 AAA
1455104 GGTTGATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (22 bp):
AAATGAAAAAGAAAAAAATCAA
Found at i:1456779 original size:156 final size:156
Alignment explanation
Indices: 1456548--1457123 Score: 624
Period size: 156 Copynumber: 3.7 Consensus size: 156
1456538 TTATCGAGAC
* * * * * *
1456548 ACTTTTACGTCAAAGGTATCCCT-TAAGGGTATTTTAGTAATTTTCTAAAATCGACTCCTAAGTT
1 ACTTTCACGTCGAAGGTATACCTATAGGGGTATTTTAGTAATTTTTTAAAATCGACTCCTAGGTT
* * * * * * *
1456612 GTCACCGGGTCTGCTTTTATACCGAAGATAGGCATTTAAGATAGGTTCATCCCATCTCTAATCAT
66 ATCACCAGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATCTCTAATCTT
*
1456677 TTTAAGTCTTTTAGGGTTACCAGGAT
131 TTTAAGTCCTTTAGGGTTACCAGGAT
* *
1456703 ACTTTCACGTCGAAGGTATACCTATAGGGGCATTTTAGTAATTTTTTAAAATGGACTCCTAGGTT
1 ACTTTCACGTCGAAGGTATACCTATAGGGGTATTTTAGTAATTTTTTAAAATCGACTCCTAGGTT
* *
1456768 ATCACTAGGTCTGCTTTTATGTCGAAGGTGGGCATTTAGGATAGGTTCATCCCATCTCTAATCTT
66 ATCACCAGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATCTCTAATCTT
* *
1456833 TTTAAGTCCTTTAGGGTTATCGGGAT
131 TTTAAGTCCTTTAGGGTTACCAGGAT
* * * *
1456859 ACTTTCACGTCGAATGTATACCCATAGGGGTATTTTCGTAATTTTTTAAAATCAACTCCTAGGTT
1 ACTTTCACGTCGAAGGTATACCTATAGGGGTATTTTAGTAATTTTTTAAAATCGACTCCTAGGTT
* * ** ** * * *
1456924 ATCACGAAGTCCACTTTTATGCTAAAGGTGGGTATTGAGGATAGGTTCATCCCATCTATAATCCT
66 ATCACCAGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATCTCTAAT-CT
* * * *
1456989 TTTTAAGTCCTTTAGGGGTATCTGG-C
130 TTTTAAGTCCTTTAGGGTTACCAGGAT
* * * * * * * * * * * *
1457015 ACTTTTACATC-AAAG-ATGGCCTA-A-GGGCATCTTCGTAATTTTTCAAAACCAACTCTTATGT
1 ACTTTCACGTCGAAGGTAT-ACCTATAGGGGTATTTTAGTAATTTTTTAAAATCGACTCCTAGGT
* * *
1457076 TATCACCGGGTCTGCTTTTATGCCGAAGGTTGGTATTTAGGATAGGTT
65 TATCACCAGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTT
1457124 TATCTTGTCT
Statistics
Matches: 359, Mismatches: 59, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
153 70 0.19
154 3 0.01
155 26 0.07
156 235 0.65
157 25 0.07
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (156 bp):
ACTTTCACGTCGAAGGTATACCTATAGGGGTATTTTAGTAATTTTTTAAAATCGACTCCTAGGTT
ATCACCAGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATCTCTAATCTT
TTTAAGTCCTTTAGGGTTACCAGGAT
Found at i:1457171 original size:153 final size:153
Alignment explanation
Indices: 1456730--1457174 Score: 347
Period size: 153 Copynumber: 2.9 Consensus size: 153
1456720 ATACCTATAG
* * * *** * * ** * *
1456730 GGGCATTTTAGTAATTTTTTAAAATGGACTCCTAGGTTATCACTAGGTCTGCTTTTATGTCGAAG
1 GGGCATCTTCGTAATTTTTCAAAACCAACTCCTAGGTTATCACGAAGTCCACTTTTATGCCAAAG
* * * * * * *** * *
1456795 GTGGGCATTTAGGATAGGTTCATCCCATCTCTAAT-CTTTTTAAGTCCTTTAGGGTTATCGGGAT
66 GTGGGTATTGAGGATAGGTTCATCCCATCTATAATCCTTTCTAAATCCTTCAGGACCATCTGG-C
* * * ** *
1456859 ACTTTCACGTCGAATGTATACCCATAG
130 ACTTTTACATC-AAAG-ATGGCC-TAA
* * * * *
1456886 GGGTATTTTCGTAATTTTTTAAAATCAACTCCTAGGTTATCACGAAGTCCACTTTTATGCTAAAG
1 GGGCATCTTCGTAATTTTTCAAAACCAACTCCTAGGTTATCACGAAGTCCACTTTTATGCCAAAG
* * * ***
1456951 GTGGGTATTGAGGATAGGTTCATCCCATCTATAATCCTTTTTAAGTCCTTTAGGGGTATCTGGCA
66 GTGGGTATTGAGGATAGGTTCATCCCATCTATAATCCTTTCTAAATCCTTCAGGACCATCTGGCA
1457016 CTTTTACATCAAAGATGGCCTAA
131 CTTTTACATCAAAGATGGCCTAA
* * * ** *
1457039 GGGCATCTTCGTAATTTTTCAAAACCAACTCTTATGTTATCACCG-GGTCTGCTTTTATGCCGAA
1 GGGCATCTTCGTAATTTTTCAAAACCAACTCCTAGGTTATCA-CGAAGTCCACTTTTATGCCAAA
* * * ***
1457103 GGTTGGTATTTAGGATAGGTTTATCTTGTCTATAATCCTTTCTAAATCCTTCAGGACCA-CTAGG
65 GGTGGGTATTGAGGATAGGTTCATCCCATCTATAATCCTTTCTAAATCCTTCAGGACCATCT-GG
1457167 CACTTTTA
129 CACTTTTA
1457175 GGTCGACGGT
Statistics
Matches: 240, Mismatches: 46, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
152 2 0.01
153 109 0.45
154 6 0.03
155 3 0.01
156 95 0.40
157 25 0.10
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (153 bp):
GGGCATCTTCGTAATTTTTCAAAACCAACTCCTAGGTTATCACGAAGTCCACTTTTATGCCAAAG
GTGGGTATTGAGGATAGGTTCATCCCATCTATAATCCTTTCTAAATCCTTCAGGACCATCTGGCA
CTTTTACATCAAAGATGGCCTAA
Done.