Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1201
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28045
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:215 original size:18 final size:18
Alignment explanation
Indices: 179--216 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
169 AAAAAATGAG
*
179 AAGAAAAAAATACATAAA
1 AAGAAAAAAATACAAAAA
197 AAGAAAAAAATGA-AAAAA
1 AAGAAAAAAAT-ACAAAAA
215 AA
1 AA
217 AAGATAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08
Consensus pattern (18 bp):
AAGAAAAAAATACAAAAA
Found at i:368 original size:17 final size:16
Alignment explanation
Indices: 334--382 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
324 AGGAACTTGG
*
334 AGAAAAAAA-GAGAGAA
1 AGAAAAAAAGGA-AAAA
350 AGAAAAGAAAGGAAAAA
1 AGAAAA-AAAGGAAAAA
*
367 AGAAAAAATGGAAAAA
1 AGAAAAAAAGGAAAAA
383 TAGTAGGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 15 0.52
17 12 0.41
18 2 0.07
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (16 bp):
AGAAAAAAAGGAAAAA
Found at i:3584 original size:52 final size:52
Alignment explanation
Indices: 3472--4132 Score: 536
Period size: 52 Copynumber: 12.8 Consensus size: 52
3462 TCAAAACTTA
* * * * * * * *
3472 TCATCTTTAAGCCCAATGTCGCTAGCCTTGGATTAGTATATTGTCACTCTTT-
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCAC-CTTTG
* * * * *
3524 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAGCC-TTA
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCA-CCTTTG
* * * * * *
3576 TCACCTTTAAGCCCAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * *
3628 TCAT-TTCTAAGACCAATGTCGTTGGCC-TTAGATCAGCACATTGGCACCTTCG
1 TCATCTT-TAAGACCAATGTCGCTGGCCATGA-ATCAGCACATTGGCACCTTTG
* * * * *
3680 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAACC-TTA
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGC-ACCTTTG
* * * * * *
3732 TCACCTTTAAGCCCAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * *
3784 TCAT-TTCTAAGACCAATGTCGTTGGCC-TTAGATCAGCACATTGGCACCTTCG
1 TCATCTT-TAAGACCAATGTCGCTGGCCATGA-ATCAGCACATTGGCACCTTTG
* * *
3836 TCATCTTTAAAACCAATGTCACTGGCCATGAATCAGCACATTGGCACCTTTA
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
** ** *
3888 TCATCTTTAAGTTCAATGTTACTGGCCA-GAATCATCACATTGGCACCTTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * * * * * *
3939 TCATCTTTAAAACCAATGTTGCTAGCCATGAATCAGCATACTAGCACCCTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * * * *
3991 TTATC--TAAAACCAAAGTCGCTGGCCATGAATTA--ACATTGGCACCTTTA
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * * * * * *
4039 TCATCTTTAAGTCCAATATCACTGGCCTTGGATCAGTACATTGGTACCTTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * * * * ** *
4091 TCGTCCTTAAGTCTAATATCATTGGCCTTGAATCAGCACATT
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATT
4133 ATCCCAACGT
Statistics
Matches: 490, Mismatches: 101, Indels: 36
0.78 0.16 0.06
Matches are distributed among these distances:
48 14 0.03
50 44 0.09
51 57 0.12
52 363 0.74
53 12 0.02
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.32
Consensus pattern (52 bp):
TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
Found at i:3768 original size:156 final size:156
Alignment explanation
Indices: 3524--4092 Score: 717
Period size: 156 Copynumber: 3.7 Consensus size: 156
3514 GTCACTCTTT
*
3524 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAGCC-TTATCACCTTTAAGC
1 TCATCTTTAAAACCAATGTCGCTAGCCATGAATCAGCACATTAGCA-CCTTTATCACCTTTAAGC
**
3588 CCAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGG
65 CCAATGTTACTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGG
3653 CCTTAGATCAGCACATTGGCACCTTCG
130 CCTTAGATCAGCACATTGGCACCTTCG
*
3680 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAACC-TTATCACCTTTAAGC
1 TCATCTTTAAAACCAATGTCGCTAGCCATGAATCAGCACATTAGC-ACCTTTATCACCTTTAAGC
**
3744 CCAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGG
65 CCAATGTTACTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGG
3809 CCTTAGATCAGCACATTGGCACCTTCG
130 CCTTAGATCAGCACATTGGCACCTTCG
* * * * **
3836 TCATCTTTAAAACCAATGTCACTGGCCATGAATCAGCACATTGGCACCTTTATCATCTTTAAGTT
1 TCATCTTTAAAACCAATGTCGCTAGCCATGAATCAGCACATTAGCACCTTTATCACCTTTAAGCC
* * * * * * *
3901 CAATGTTACTGGCC-AGAATCATCACATTGGCACCTTTGTCATCTT-TAAAACCAATGTTGCTAG
66 CAATGTTACTGGCCTTGGATCAGCACATTGGCACCTTTGTCAT-TTCTAAGACCAATGTCGTTGG
* * * *
3964 CCAT-GAATCAGCATACTAGCACCCTT-G
130 CCTTAG-ATCAGCACATTGGCA-CCTTCG
* * * * * * *
3991 TTATC--TAAAACCAAAGTCGCTGGCCATGAATTA--ACATTGGCACCTTTATCATCTTTAAGTC
1 TCATCTTTAAAACCAATGTCGCTAGCCATGAATCAGCACATTAGCACCTTTATCACCTTTAAGCC
* * * *
4052 CAATATCACTGGCCTTGGATCAGTACATTGGTACCTTTGTC
66 CAATGTTACTGGCCTTGGATCAGCACATTGGCACCTTTGTC
4093 GTCCTTAAGT
Statistics
Matches: 375, Mismatches: 32, Indels: 16
0.89 0.08 0.04
Matches are distributed among these distances:
151 39 0.10
152 21 0.06
153 25 0.07
154 1 0.00
155 62 0.17
156 226 0.60
157 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (156 bp):
TCATCTTTAAAACCAATGTCGCTAGCCATGAATCAGCACATTAGCACCTTTATCACCTTTAAGCC
CAATGTTACTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGGC
CTTAGATCAGCACATTGGCACCTTCG
Found at i:5392 original size:20 final size:20
Alignment explanation
Indices: 5367--5420 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
5357 CGTTAGGACA
* *
5367 ATGTATCGATAC-TTGTCACT
1 ATGTATCGATACAATGT-ACC
*
5387 ATGTATTGATACAATGTACC
1 ATGTATCGATACAATGTACC
5407 ATGTATCGATACAA
1 ATGTATCGATACAA
5421 ATAGTGGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 26 0.90
21 3 0.10
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:5474 original size:20 final size:19
Alignment explanation
Indices: 5449--5504 Score: 76
Period size: 20 Copynumber: 2.9 Consensus size: 19
5439 CTGTCAGTTT
*
5449 TATGTATCGATACAATTAA
1 TATGTATCGATACAATGAA
5468 GTATGTATCGATACAATGAA
1 -TATGTATCGATACAATGAA
* *
5488 CATGAATCGATACAATG
1 TATGTATCGATACAATG
5505 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 15 0.45
20 18 0.55
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.30
Consensus pattern (19 bp):
TATGTATCGATACAATGAA
Found at i:5498 original size:19 final size:20
Alignment explanation
Indices: 5454--5504 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
5444 AGTTTTATGT
* * *
5454 ATCGATACAATTAAGTATGT
1 ATCGATACAATGAAGCATGA
5474 ATCGATACAATGAA-CATGA
1 ATCGATACAATGAAGCATGA
5493 ATCGATACAATG
1 ATCGATACAATG
5505 TATCGATACA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (20 bp):
ATCGATACAATGAAGCATGA
Found at i:9061 original size:31 final size:30
Alignment explanation
Indices: 8988--9061 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 30
8978 AAGTTTTTGT
* *
8988 TGAAG-ATTTTGAAGAAAAATGAAATGAAT
1 TGAAGAATTTTGAAGAAAAATGAAAAGAAA
* * *
9017 TGAAGCAAATTTGATGAAAATTGAAAAAGAAA
1 TGAAG-AATTTTGAAGAAAAATG-AAAAGAAA
9049 TGAAGAATTTTGA
1 TGAAGAATTTTGA
9062 GATTGAAAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 5 0.14
31 20 0.56
32 11 0.31
ACGTcount: A:0.51, C:0.01, G:0.20, T:0.27
Consensus pattern (30 bp):
TGAAGAATTTTGAAGAAAAATGAAAAGAAA
Found at i:10238 original size:20 final size:19
Alignment explanation
Indices: 10215--10253 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
10205 CTGTGCATTA
10215 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
10235 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
10254 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:18971 original size:20 final size:21
Alignment explanation
Indices: 18921--18973 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
18911 GCCAATCACC
18921 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTTTGCA
* *
18942 AGTATTGATACA-T-TTTGTCA
1 TGTATCGATACATTCTTTG-CA
18962 TGTATCGATACA
1 TGTATCGATACA
18974 ATGTATCGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 13 0.48
21 10 0.37
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTCTTTGCA
Found at i:18979 original size:13 final size:13
Alignment explanation
Indices: 18961--19018 Score: 65
Period size: 13 Copynumber: 4.9 Consensus size: 13
18951 ACATTTTGTC
18961 ATGTATCGATACA
1 ATGTATCGATACA
18974 ATGTATCGATAC-
1 ATGTATCGATACA
*
18986 -TGTA-C-AT--T
1 ATGTATCGATACA
18994 ATGTATCGATACA
1 ATGTATCGATACA
19007 ATGTATCGATAC
1 ATGTATCGATAC
19019 TGTGCATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
9 6 0.16
10 2 0.05
11 6 0.16
13 24 0.63
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:18998 original size:33 final size:33
Alignment explanation
Indices: 18961--19039 Score: 140
Period size: 33 Copynumber: 2.4 Consensus size: 33
18951 ACATTTTGTC
18961 ATGTATCGATACAATGTATCGATACTGTACATT
1 ATGTATCGATACAATGTATCGATACTGTACATT
*
18994 ATGTATCGATACAATGTATCGATACTGTGCATT
1 ATGTATCGATACAATGTATCGATACTGTACATT
*
19027 ATGTATTGATACA
1 ATGTATCGATACA
19040 TTTGAAGGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (33 bp):
ATGTATCGATACAATGTATCGATACTGTACATT
Found at i:19032 original size:20 final size:19
Alignment explanation
Indices: 18974--19038 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
18964 TATCGATACA
18974 ATGTATCGATACTGTACATT
1 ATGTATCGATACTGT-CATT
18994 ATGTATCGATA----CA--
1 ATGTATCGATACTGTCATT
19007 ATGTATCGATACTGTGCATT
1 ATGTATCGATACTGT-CATT
*
19027 ATGTATTGATAC
1 ATGTATCGATAC
19039 ATTTGAAGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
18 2 0.05
20 22 0.59
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (19 bp):
ATGTATCGATACTGTCATT
Found at i:19051 original size:20 final size:20
Alignment explanation
Indices: 19028--19067 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
19018 CTGTGCATTA
*
19028 TGTATTGATACATTTGAAGG
1 TGTATCGATACATTTGAAGG
*
19048 TGTATCGATACATTTTAAGG
1 TGTATCGATACATTTGAAGG
19068 GTTTTGACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTTGAAGG
Found at i:21752 original size:20 final size:20
Alignment explanation
Indices: 21716--21768 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
21706 CGTTGCGACA
21716 ATATCGATACAATAAGTGA-AT
1 ATATCGATAC-ATAAGT-ATAT
*
21737 GTATCGATACATAAGTATAT
1 ATATCGATACATAAGTATAT
21757 ATATCGATACAT
1 ATATCGATACAT
21769 GTTTGAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 19 0.66
21 9 0.31
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.32
Consensus pattern (20 bp):
ATATCGATACATAAGTATAT
Found at i:23492 original size:20 final size:21
Alignment explanation
Indices: 23438--23493 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
23428 AAATGAGAAG
23438 AAAAAAT--AACAATAAAAAGA
1 AAAAAATGAAACAA-AAAAAGA
23458 AAAAAATGAAA-AAAAAAAGA
1 AAAAAATGAAACAAAAAAAGA
* *
23478 TAAGAA-GAAACAAAAA
1 AAAAAATGAAACAAAAA
23494 GGGACTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 4 0.13
20 23 0.74
21 2 0.06
22 2 0.06
ACGTcount: A:0.80, C:0.04, G:0.09, T:0.07
Consensus pattern (21 bp):
AAAAAATGAAACAAAAAAAGA
Found at i:23626 original size:17 final size:16
Alignment explanation
Indices: 23592--23640 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
23582 AGGAACTTGG
*
23592 AGAAAAAAA-GAGAGAA
1 AGAAAAAAAGGA-AAAA
23608 AGAAAAGAAAGGAAAAA
1 AGAAAA-AAAGGAAAAA
*
23625 AGAAAAAATGGAAAAA
1 AGAAAAAAAGGAAAAA
23641 TAGTAGGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 15 0.52
17 12 0.41
18 2 0.07
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (16 bp):
AGAAAAAAAGGAAAAA
Found at i:26845 original size:52 final size:52
Alignment explanation
Indices: 26733--27308 Score: 501
Period size: 52 Copynumber: 11.2 Consensus size: 52
26723 TCAAAACTTA
* * * * * * * *
26733 TCATCTTTAAGCCCAATGTCGCTAGCCTTGGATTAGTATATTGTCACTCTTT-
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCAC-CTTTG
* * * * *
26785 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAGCC-TTA
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCA-CCTTTG
* * * * * *
26837 TCACCTTTAAGCCCAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * *
26889 TCAT-TTCTAAGACCAATGTCGTTGGCC-TTAGATCAGCACATTGGCACCTTCG
1 TCATCTT-TAAGACCAATGTCGCTGGCCATGA-ATCAGCACATTGGCACCTTTG
* * * * *
26941 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAACC-TTA
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGC-ACCTTTG
* * * * * *
26993 TCACCTTTAAGCCCAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * *
27045 TCAT-TTCTAAGACCAATGTCGTTGGCC-TTAGATCAGCACATTGGCACCTTCG
1 TCATCTT-TAAGACCAATGTCGCTGGCCATGA-ATCAGCACATTGGCACCTTTG
* * *
27097 TCATCTTTAAAACCAATGTCACTGGCCATGAATCAGCACATTGGCACCTTTA
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
** ** *
27149 TCATCTTTAAGTTCAATGTTACTGGCCA-GAATCATCACATTGGCACCTTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * * * * * *
27200 TCATCTTTAAAACCAATGTTGCTAGCCATGAATCAGCATACTAGCACCCTTG
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
* * * * *
27252 TTATC--TAAAACCAAAGTCGCTGGCCATGAATTA--ACATTGGCACCTTTA
1 TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
27300 TCATCTTTA
1 TCATCTTTA
27309 GGTATTGTGT
Statistics
Matches: 423, Mismatches: 85, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
48 14 0.03
50 26 0.06
51 57 0.13
52 314 0.74
53 12 0.03
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (52 bp):
TCATCTTTAAGACCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTTG
Found at i:27029 original size:156 final size:156
Alignment explanation
Indices: 26785--27218 Score: 703
Period size: 156 Copynumber: 2.8 Consensus size: 156
26775 GTCACTCTTT
*
26785 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAGCCTTATCACCTTTAAGCC
1 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAACCTTATCACCTTTAAGCC
26850 CAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGGC
66 CAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGGC
26915 CTTAGATCAGCACATTGGCACCTTCG
131 CTTAGATCAGCACATTGGCACCTTCG
26941 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAACCTTATCACCTTTAAGCC
1 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAACCTTATCACCTTTAAGCC
27006 CAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGGC
66 CAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGGC
27071 CTTAGATCAGCACATTGGCACCTTCG
131 CTTAGATCAGCACATTGGCACCTTCG
* * * * * *
27097 TCATCTTTAAAACCAATGTCACTGGCCATGAATCAGCACATTGGC-ACCTTTATCATCTTTAAGT
1 TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAACC-TTATCACCTTTAAGC
* ** * * * *
27161 TCAATGTTACTGGCC-AGAATCATCACATTGGCACCTTTGTCATCTT-TAAAACCAATGT
65 CCAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTGTCAT-TTCTAAGACCAATGT
27219 TGCTAGCCAT
Statistics
Matches: 262, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
155 39 0.15
156 223 0.85
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (156 bp):
TCATCTTTAAAATCAATGTCGCTAGCCATGAATCAGCACATTAGCAACCTTATCACCTTTAAGCC
CAATGTTGTTGGCCTTGGATCAGCACATTGGCACCTTTGTCATTTCTAAGACCAATGTCGTTGGC
CTTAGATCAGCACATTGGCACCTTCG
Done.