Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1208
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10074
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Found at i:3280 original size:16 final size:16
Alignment explanation
Indices: 3261--3311 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
3251 AAAAAAAGTC
3261 AAAA-GCAAAAGCACAA
1 AAAATGCAAAAGCA-AA
3277 AAAATG-AAAAG-AAA
1 AAAATGCAAAAGCAAA
3291 AAAAGTGCAAAAGCAAA
1 AAAA-TGCAAAAGCAAA
3308 AAAA
1 AAAA
3312 AAGGTAACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.19
15 3 0.10
16 14 0.45
17 8 0.26
ACGTcount: A:0.73, C:0.10, G:0.14, T:0.04
Consensus pattern (16 bp):
AAAATGCAAAAGCAAA
Found at i:4561 original size:27 final size:27
Alignment explanation
Indices: 4523--4895 Score: 454
Period size: 27 Copynumber: 13.7 Consensus size: 27
4513 CTCTAGTACT
4523 GTGG-ACCTCTTTAAAGTCCACAACTCC
1 GTGGCACC-CTTTAAAGTCCACAACTCC
* *
4550 GTGGCATCCTTTTAAGTCCACAACTCC
1 GTGGCACCCTTTAAAGTCCACAACTCC
** *
4577 GTGGCA-TTTTTTAAGTCCACAACTCC
1 GTGGCACCCTTTAAAGTCCACAACTCC
4603 GTGGCA-CCTTTAAAGTCCACAACTCC
1 GTGGCACCCTTTAAAGTCCACAACTCC
*
4629 GTGGTACCCTTTTAAAGT-CACAACTCC
1 GTGGCACCC-TTTAAAGTCCACAACTCC
*
4656 GTGGCACCCTTTTAAGTCCACAACTCC
1 GTGGCACCCTTTAAAGTCCACAACTCC
4683 GTGGCACCCTTTAAAGTCCACAACTCC
1 GTGGCACCCTTTAAAGTCCACAACTCC
4710 GTGGCACCCTTT-AAGTAACCACAACTCC
1 GTGGCACCCTTTAAAGT--CCACAACTCC
*
4738 GTGGCACCCTTTTAAAGTCCACAACTCT
1 GTGGCACCC-TTTAAAGTCCACAACTCC
* *
4766 GTGGCACCCTTTTTAAGTCCACAACTCT
1 GTGGCACCC-TTTAAAGTCCACAACTCC
4794 GTGGCACCCTTTTTAAAGTCCACAACTCC
1 GTGGCACCC--TTTAAAGTCCACAACTCC
* *
4823 GTGGCACTCTTTTAAAGTCCACAACTCT
1 GTGGCAC-CCTTTAAAGTCCACAACTCC
* * *
4851 G-GGCAACCCTTTTAAGTTCAC-ACTTC
1 GTGGC-ACCCTTTAAAGTCCACAACTCC
* *
4877 GTGGCACCTTTTTAAGTCC
1 GTGGCACCCTTTAAAGTCC
4896 TCAAGGCGGT
Statistics
Matches: 310, Mismatches: 24, Indels: 25
0.86 0.07 0.07
Matches are distributed among these distances:
26 73 0.24
27 111 0.36
28 94 0.30
29 27 0.09
30 5 0.02
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.28
Consensus pattern (27 bp):
GTGGCACCCTTTAAAGTCCACAACTCC
Found at i:4740 original size:28 final size:28
Alignment explanation
Indices: 4532--4958 Score: 488
Period size: 28 Copynumber: 15.5 Consensus size: 28
4522 TGTGGACCTC
*
4532 TTTAAAGTCCACAACTCCGTGGCATCCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
*
4560 TTT-AAGTCCACAACTCCGTGGCA--TT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
*
4585 TTTTAAGTCCACAACTCCGTGGCA-CC-
1 TTTAAAGTCCACAACTCCGTGGCACCCT
*
4611 TTTAAAGTCCACAACTCCGTGGTACCCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
4639 TTTAAAGT-CACAACTCCGTGGCACCCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
4666 TTT-AAGTCCACAACTCCGTGGCACCC-
1 TTTAAAGTCCACAACTCCGTGGCACCCT
4692 TTTAAAGTCCACAACTCCGTGGCACCC-
1 TTTAAAGTCCACAACTCCGTGGCACCCT
4719 TTT-AAGTAACCACAACTCCGTGGCACCCT
1 TTTAAAGT--CCACAACTCCGTGGCACCCT
*
4748 TTTAAAGTCCACAACTCTGTGGCACCCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
* *
4776 TTTTAAGTCCACAACTCTGTGGCACCCTT
1 TTTAAAGTCCACAACTCCGTGGCACCC-T
*
4805 TTTAAAGTCCACAACTCCGTGGCACTCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
*
4833 TTTAAAGTCCACAACTCTG-GGCAACCCT
1 TTTAAAGTCCACAACTCCGTGGC-ACCCT
* *
4861 TTT-AAGTTCAC-ACTTCGTGGCA-CCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
* * ** *
4886 TTTTAAGTCCTCAAGGCGGTTGGCATTCCCT
1 TTTAAAGTCCACAACTCCG-TGGCA--CCCT
* * **
4917 TCTAAAG-CCACAAGTTAGTGGCACCCT
1 TTTAAAGTCCACAACTCCGTGGCACCCT
*
4944 TTTCAAAGCCCACAA
1 TTT-AAAGTCCACAA
4959 GTTAGTGGCA
Statistics
Matches: 350, Mismatches: 28, Indels: 41
0.84 0.07 0.10
Matches are distributed among these distances:
25 10 0.03
26 64 0.18
27 108 0.31
28 110 0.31
29 39 0.11
30 11 0.03
31 8 0.02
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (28 bp):
TTTAAAGTCCACAACTCCGTGGCACCCT
Found at i:4974 original size:28 final size:28
Alignment explanation
Indices: 4920--5683 Score: 328
Period size: 32 Copynumber: 25.4 Consensus size: 28
4910 ATTCCCTTCT
* *
4920 AAAG-CCACAAGTTAGTGGCACCCTTTTC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTC
* *
4948 AAAGCCCACAAGTTAGTGGCATATTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTC
*
4976 AAAGCCCACAAGTCAGTGACATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATC-TTTTC
** *
5005 AAAGTCCACACAAGTTGGTGGCATCCTTTC
1 AAAG-CC-CACAAGTCAGTGGCATCTTTTC
* *
5035 AAAGCCCACAAGTCAATGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTC
* *
5063 AAAG-CCATAAGTCAGTGGCACCATTTTC
1 AAAGCCCACAAGTCAGTGGCATC-TTTTC
* * *
5091 AAAGCCCACAAGTCAGTGGCAACATTTG
1 AAAGCCCACAAGTCAGTGGCATCTTTTC
* *
5119 AAAGCGCCCACACAAGTCGGTGGCAACTCATTTC
1 AAA--G-CC-CACAAGTCAGTGGC-A-TCTTTTC
** * *
5153 AAAGCCCACACAAGTTGGTGGCAACCCATTTC
1 AAAG-CC-CACAAGTCAGTGGC-A-TCTTTTC
** * *
5185 AAAGCCCACACAAGTTGGTGGCAACCCATTTC
1 AAAG-CC-CACAAGTCAGTGGC-A-TCTTTTC
* * *
5217 AAAGCCCACACAAGTCGGTGGCAACCCATTTC
1 AAAG-CC-CACAAGTCAGTGGC-A-TCTTTTC
** * *
5249 AAAGTCCACACAAGTTGGTGGCAAACCCATTTC
1 AAAG-CC-CACAAGTCAGTGGC--A-TCTTTTC
* * *
5282 AAAGCCCACACAAGTCGGTGGCAACCTATTC
1 AAAG-CC-CACAAGTCAGTGGC-ATCTTTTC
** * *
5313 AAAGCCCACCAAGTTGGTGGCAACCCATTTC
1 AAAGCCCA-CAAGTCAGTGGC-A-TCTTTTC
* *
5344 AAAGCCCACACAAGTCGGTGGCAACCTATTTC
1 AAAG-CC-CACAAGTCAGTGGC-ATCT-TTTC
** * * * *
5376 AAAGCCCACACAAGTTGGTAGCAACCCATTTG
1 AAAG-CC-CACAAGTCAGTGGC-A-TCTTTTC
** * * *
5408 AAAGCCCACACAAGTTGGTGGTAACTCATTTG
1 AAAG-CC-CACAAGTCAGTGG-CA-TCTTTTC
* * *
5440 AAAGCCCACACAAGTCGGTGGCAACCCATTTC
1 AAAG-CC-CACAAGTCAGTGGC-A-TCTTTTC
* * *
5472 AAAGCCCACAAGTCAGTGGCACCCTTTA
1 AAAGCCCACAAGTCAGTGGCATCTTTTC
** *
5500 AAAGCCACACAAGTTGGTGGCA-CCTTTC
1 AAAGCC-CACAAGTCAGTGGCATCTTTTC
* *
5528 AAAGCCCACAAGTCAGTGGCACCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTC
* * * *
5556 AAAGCCCACAAGTTAGTGGCACCCTTTG
1 AAAGCCCACAAGTCAGTGGCATCTTTTC
* * *
5584 AAAGCCCACAAGTCAGTGGTACCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTC
* *
5612 AAAGCCCACAAGTCCGTGGTACTCTTTTC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTC
**
5641 AAAGCCCACACGAGTTGGTGGCAAACTCTTTTC
1 AAAGCCCACA--AGTCAGTGGC--A-TCTTTTC
5674 AAAGCCCACA
1 AAAGCCCACA
5684 TAAGTTAGTG
Statistics
Matches: 641, Mismatches: 67, Indels: 51
0.84 0.09 0.07
Matches are distributed among these distances:
27 28 0.04
28 165 0.26
29 74 0.12
30 39 0.06
31 45 0.07
32 228 0.36
33 54 0.08
34 8 0.01
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTC
Found at i:5142 original size:32 final size:31
Alignment explanation
Indices: 5001--5688 Score: 628
Period size: 32 Copynumber: 22.6 Consensus size: 31
4991 GTGACATCTT
* * *
5001 TTTCAAAGTCCACACAAGTTGGTGGCATCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
** *
5031 TTTCAAAG-CC-CACAAGTCAATGGCATCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
* *
5059 TTTCAAAG--C-CATAAGTCAGTGGC-ACCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
5086 TTTTCAAAG-CC-CACAAGTCAGTGGCAA-CA
1 -TTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
5115 TTTGAAAGCGCCCACACAAGTCGGTGGCAACTCA
1 TTTCAAA--GCCCACACAAGTCGGTGGCAAC-CA
*
5149 TTTCAAAGCCCACACAAGTTGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
*
5181 TTTCAAAGCCCACACAAGTTGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
5213 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
* *
5245 TTTCAAAGTCCACACAAGTTGGTGGCAAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGC-AA-CCA
5278 TTTCAAAGCCCACACAAGTCGGTGGCAACC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
5308 TATTCAAAGCCCAC-CAAGTTGGTGGCAACCCA
1 T-TTCAAAGCCCACACAAGTCGGTGGCAA-CCA
5340 TTTCAAAGCCCACACAAGTCGGTGGCAACCTA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACC-A
* *
5372 TTTCAAAGCCCACACAAGTTGGTAGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
* * *
5404 TTTGAAAGCCCACACAAGTTGGTGGTAACTCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CA
*
5436 TTTGAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
* *
5468 TTTCAAAG-CC-CACAAGTCAGTGGC-ACCC
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
* *
5496 TTTAAAAG-CCACACAAGTTGGTGGC-ACC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
* *
5524 TTTCAAAG-CC-CACAAGTCAGTGGC-ACCC
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
** *
5552 TTTCAAAG-CC-CACAAGTTAGTGGC-ACCC
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
* * * *
5580 TTTGAAAG-CC-CACAAGTCAGTGG-TACCC
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCA
* * *
5608 TTTCAAAG-CC-CACAAGTCCGTGG-TACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CA
* * *
5637 TTTCAAAGCCCACACGAGTTGGTGGCAAACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGC-AAC-CA
*
5670 TTTCAAAGCCCACATAAGT
1 TTTCAAAGCCCACACAAGT
5689 TAGTGACACC
Statistics
Matches: 584, Mismatches: 46, Indels: 53
0.86 0.07 0.08
Matches are distributed among these distances:
26 2 0.00
27 28 0.05
28 133 0.23
29 43 0.07
30 39 0.07
31 45 0.08
32 230 0.39
33 56 0.10
34 8 0.01
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (31 bp):
TTTCAAAGCCCACACAAGTCGGTGGCAACCA
Found at i:5346 original size:191 final size:181
Alignment explanation
Indices: 4920--5689 Score: 710
Period size: 191 Copynumber: 4.2 Consensus size: 181
4910 ATTCCCTTCT
* * * *
4920 AAAG-CCACAAGTTAGTGGCACCCTTTTCAAAG-CC-CACAAGTTAGTGGCATA---TTTTCAAA
1 AAAGCCCACAAGTCAGTGGCAACC-TTTCAAAGCCCACACAAGTTGGTGGCA-ACCCATTTCAAA
* * * ** * *
4979 G-CC-CACAAGTCAGTGAC-ATCTTTTTCAAAGTCCACACAAGTTGGTGGCATCCTTTCAAAGCC
64 GCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGCACCCTTTCAAAGCC
* * * *
5041 CACAAGTCAATGGC-ATCCTTTCAAAG-CCATAAGTCAGTGGC-A-CCATTTTC
129 CACAAGTCAGTGGCAACCCTTTCAAAGCCCACAAGTCGGTGGCAACCCA-TTTC
* * * *
5091 AAAGCCCACAAGTCAGTGGCAACATTTGAAAGCGCCCACACAAGTCGGTGGCAACTCATTTCAAA
1 AAAGCCCACAAGTCAGTGGCAACCTTTCAAA--GCCCACACAAGTTGGTGGCAACCCATTTCAAA
*
5156 GCCCACACAAGTTGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAG
64 GCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGC-ACCC-TTTCAAAG
* *
5221 CCCACACAAGTCGGTGGCAACCCATTTCAAAGTCCACACAAGTTGGTGGCAAACCCATTTC
127 -CC-CACAAGTCAGTGGCAACCC-TTTCAAAG-CC-CACAAGTCGGTGGC-AACCCATTTC
*
5282 AAAGCCCACACAAGTCGGTGGCAACCTATTCAAAGCCCAC-CAAGTTGGTGGCAACCCATTTCAA
1 AAAG-CC-CACAAGTCAGTGGCAACCT-TTCAAAGCCCACACAAGTTGGTGGCAACCCATTTCAA
* * *
5346 AGCCCACACAAGTCGGTGGCAACCTATTTCAAAGCCCACACAAGTTGGTAGCAACCCATTTGAAA
63 AGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGC-ACCC-TTTCAAA
** * * *
5411 GCCCACACAAGTTGGTGGTAACTCATTTGAAAGCCCACACAAGTCGGTGGCAACCCATTTC
126 G-CC-CACAAGTCAGTGGCAAC-CCTTTCAAAG-CC-CACAAGTCGGTGGCAACCCATTTC
* *
5472 AAAGCCCACAAGTCAGTGGCACCCTTTAAAAG-CCACACAAGTTGGTGGC-A-CC-TTTCAAAG-
1 AAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAGC
* * *
5532 CC-CACAAGTCAGTGGC-ACCC-TTTCAAAG-CC-CACAAGTTAGTGGCACCCTTTGAAAGCCCA
66 CCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGCACCCTTTCAAAGCCCA
* * * * *
5592 CAAGTCAGTGG-TACCCTTTCAAAGCCCACAAGTCCGTGG-TACTCTTTTC
131 CAAGTCAGTGGCAACCCTTTCAAAGCCCACAAGTCGGTGGCAACCCATTTC
** *
5641 AAAGCCCACACGAGTTGGTGGCAAACTCTTTTCAAAGCCCACATAAGTT
1 AAAGCCCACA--AGTCAGTGGC-AAC-C-TTTCAAAGCCCACACAAGTT
5690 AGTGACACCT
Statistics
Matches: 508, Mismatches: 57, Indels: 64
0.81 0.09 0.10
Matches are distributed among these distances:
169 17 0.03
170 12 0.02
171 20 0.04
172 26 0.05
173 4 0.01
174 21 0.04
175 25 0.05
176 8 0.02
177 12 0.02
178 14 0.03
179 13 0.03
180 35 0.07
181 6 0.01
182 21 0.04
183 4 0.01
184 20 0.04
185 5 0.01
186 13 0.03
187 18 0.04
188 18 0.04
189 13 0.03
190 14 0.03
191 135 0.27
192 12 0.02
193 17 0.03
194 5 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (181 bp):
AAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAAGC
CCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGCACCCTTTCAAAGCCCA
CAAGTCAGTGGCAACCCTTTCAAAGCCCACAAGTCGGTGGCAACCCATTTC
Found at i:5890 original size:49 final size:50
Alignment explanation
Indices: 5825--5963 Score: 196
Period size: 49 Copynumber: 2.9 Consensus size: 50
5815 GTCGCTGGGC
* * *
5825 CCTTGAATCAGCACATTGTCCACTTTTCCCTTAACTCAATGTCACTCTGG
1 CCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATGTCACGCTAG
* *
5875 CCTTG-ATCAGCACATTATCCACTTTTCCCTTAGCTCAAT-T-TCGCTAG
1 CCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATGTCACGCTAG
*
5922 CCTTGAATCAGCACATTGTCCAC-TTTCCCTTAGCTCGATGTC
1 CCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATGTC
5964 GTTGGCCTTG
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
47 24 0.30
48 18 0.23
49 32 0.41
50 5 0.06
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (50 bp):
CCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATGTCACGCTAG
Found at i:5950 original size:47 final size:48
Alignment explanation
Indices: 5806--5986 Score: 206
Period size: 47 Copynumber: 3.8 Consensus size: 48
5796 GGCACCTTTA
*
5806 TTAGCTC-ATGTCGCTGGGCCCTTGAATCAGCACATTGTCCACTTTTCCC
1 TTAGCTCAATTTCGCT-GG-CCTTGAATCAGCACATTGTCCACTTTTCCC
* * * *
5855 TTAACTCAATGTCACTCTGGCCTTG-ATCAGCACATTATCCACTTTTCCC
1 TTAGCTCAAT-T-TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
*
5904 TTAGCTCAATTTCGCTAGCCTTGAATCAGCACATTGTCCAC-TTTCCC
1 TTAGCTCAATTTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
* * * **
5951 TTAGCTCGATGTCGTTGGCCTTGAATTGGCACATTG
1 TTAGCTCAATTTCGCTGGCCTTGAATCAGCACATTG
5987 GCACCCCTCT
Statistics
Matches: 112, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 45 0.40
48 17 0.15
49 38 0.34
50 7 0.06
51 2 0.02
52 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (48 bp):
TTAGCTCAATTTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
Found at i:6683 original size:16 final size:16
Alignment explanation
Indices: 6642--6683 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
6632 GGGGGGTTGA
6642 AAAAAAAAAAGCTTTC
1 AAAAAAAAAAGCTTTC
*
6658 AGAAAAAAAAGCTTTC
1 AAAAAAAAAAGCTTTC
6674 AAAAAAAAAA
1 AAAAAAAAAA
6684 ACACAAAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.69, C:0.10, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAAAAAAAAGCTTTC
Done.