genome.fa.s1210.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1210
Parameters: 2 7 7 80 10 50 1000
Length:  45983

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1713--1775	20	2.8	23	76	13	69	66	33	0	0	0.92
1708--1760	14	4.1	14	79	11	51	66	33	0	0	0.92
1708--1771	33	2.0	30	85	8	83	65	34	0	0	0.93
1776--1813	9	4.2	9	87	9	51	0	5	86	7	0.69
1776--1832	15	3.6	15	80	7	51	0	7	80	12	0.89
1954--2027	1	74.0	1	72	0	58	0	0	86	13	0.57
1929--2030	35	3.1	32	81	13	118	0	0	81	18	0.69
1928--2034	32	3.3	30	80	18	117	0	0	81	18	0.69
1928--2034	33	3.3	31	81	16	119	0	0	81	18	0.69
1951--2030	15	5.4	14	84	11	97	0	0	85	15	0.61
2041--2119	32	2.4	33	80	4	88	39	60	0	0	0.97
2061--2103	16	2.7	16	77	0	50	46	53	0	0	1.00
2177--2274	17	5.5	18	71	14	53	24	75	0	0	0.80
2225--2272	1	48.0	1	82	0	51	10	89	0	0	0.48
2207--2257	22	2.3	22	82	0	57	19	80	0	0	0.71
2208--2276	31	2.2	31	85	10	88	17	82	0	0	0.67
2225--2281	22	2.6	22	88	0	78	14	84	0	1	0.71
2279--2436	14	10.7	14	74	11	120	81	18	0	0	0.74
2297--2455	31	5.1	30	75	15	144	81	18	0	0	0.74
2280--2375	28	3.5	29	90	9	141	87	12	0	0	0.54
2295--2435	29	4.9	29	76	9	135	81	17	0	0	0.73
2280--2442	59	2.7	59	80	6	177	80	18	0	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2297--2377	1	81.0	1	82	0	90	90	9	0	0	0.47
2388--2462	19	3.8	19	73	15	71	78	20	0	1	0.82
2393--2452	16	3.9	16	82	6	72	78	21	0	0	0.75
2280--2462	59	3.2	56	71	16	146	80	18	0	1	0.78
2287--2456	9	17.7	10	70	15	83	80	19	0	0	0.76
2281--2462	29	6.4	28	74	14	124	80	18	0	1	0.78
2280--2465	23	7.4	24	73	24	111	79	19	0	1	0.79
2469--2549	35	2.4	33	82	13	101	22	77	0	0	0.76
2504--2546	14	3.1	14	80	12	54	16	83	0	0	0.64
2463--2584	60	2.1	59	86	7	167	25	74	0	0	0.82
2464--2618	23	6.6	23	69	17	79	25	74	0	0	0.82
2463--2618	37	4.3	38	72	14	116	25	74	0	0	0.82
2471--2603	60	2.2	58	79	13	144	27	72	0	0	0.84
2619--2656	1	38.0	1	100	0	76	0	0	0	100	0.00
2753--2990	5	45.4	5	70	18	112	0	0	74	25	0.82
2737--3097	27	14.1	25	68	20	103	0	0	73	26	0.83
2738--2936	11	18.3	11	77	13	155	0	0	77	22	0.76
2847--2928	1	82.0	1	75	0	56	0	0	85	14	0.60
2915--3113	44	4.7	42	68	19	117	0	0	69	30	0.88
2925--3005	18	5.3	15	76	23	64	0	0	64	35	0.94
2740--3102	150	2.5	147	78	10	339	0	0	74	25	0.83
2745--3099	16	21.0	16	69	18	161	0	0	73	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2891--3193	128	2.4	126	82	11	327	0	0	69	30	0.89
2737--3098	25	14.2	25	70	21	145	0	0	74	25	0.83
2740--3095	28	12.3	29	67	20	135	0	0	74	25	0.82
3091--3164	18	3.9	20	72	15	59	0	0	58	41	0.98
3159--3205	9	5.4	9	92	5	71	0	0	74	25	0.82
2787--3231	10	39.2	12	68	21	75	0	0	71	28	0.87
3162--3253	8	10.6	8	78	18	62	0	0	75	25	0.81
3293--3319	12	2.2	12	100	0	54	66	33	0	0	0.92
3605--3629	12	2.1	12	100	0	50	48	8	16	28	1.74
4690--4718	8	3.6	8	100	0	58	62	0	0	37	0.96
4832--4879	16	3.1	15	76	8	51	52	2	0	45	1.12
4859--4911	26	2.0	27	88	3	81	41	1	0	56	1.10
4857--4947	24	3.8	23	72	20	64	40	1	0	58	1.05
4893--4947	24	2.5	21	78	16	65	40	0	0	60	0.97
5266--5401	69	2.0	69	98	0	263	52	2	12	31	1.54
7858--7908	19	2.7	19	80	17	54	58	3	3	33	1.35
9825--9889	33	2.0	33	90	0	103	6	26	3	64	1.32
10349--10549	98	2.0	99	88	4	300	44	11	4	39	1.62
13892--13933	21	2.0	22	86	13	61	54	0	0	45	0.99
15267--15341	33	2.2	34	88	6	109	26	12	9	52	1.69
15872--15911	5	7.6	5	83	10	53	40	0	0	60	0.97
15870--15918	16	3.0	16	90	3	80	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15873--15939	22	3.0	23	83	12	70	34	0	1	64	1.03
16199--16268	30	2.3	29	80	11	77	61	0	1	37	1.05
16235--16273	16	2.3	17	82	13	53	56	0	0	43	0.99
16801--16862	2	33.0	2	77	18	62	46	1	1	50	1.20
16871--16909	18	2.2	18	100	0	78	66	0	5	28	1.12
17112--17194	40	2.1	40	82	8	98	50	0	1	48	1.08
18022--18182	35	4.6	34	71	18	107	54	0	3	41	1.23
18002--18138	73	1.9	71	80	8	161	53	0	5	40	1.25
18033--18170	37	4.1	31	73	19	98	52	0	3	42	1.24
22324--22374	20	2.4	21	80	9	59	49	0	0	50	1.00
23108--23145	16	2.3	17	90	4	60	63	7	2	26	1.35
23416--23508	41	2.2	42	84	5	118	45	6	3	45	1.45
23419--23613	104	1.9	106	84	4	270	45	8	4	42	1.54
25769--25841	33	2.2	33	90	2	112	49	13	10	26	1.75
34011--34035	2	12.5	2	100	0	50	48	0	0	52	1.00
35166--35246	41	2.0	41	90	4	128	16	4	8	70	1.30
36909--36934	13	2.0	13	100	0	52	30	15	15	38	1.88
36973--37048	21	3.7	21	80	3	100	28	17	11	42	1.84
36994--37066	20	3.6	20	81	3	101	31	19	13	35	1.91
36973--37066	41	2.3	41	98	0	179	29	18	12	39	1.88
39507--39545	13	3.0	13	96	0	69	35	15	17	30	1.91
39531--39609	20	3.7	20	75	18	70	45	15	13	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41624--41654	15	2.1	15	93	0	53	12	22	16	48	1.80
45716--45741	13	2.0	13	100	0	52	30	15	15	38	1.88
45780--45855	21	3.7	21	80	3	100	28	17	11	42	1.84
45801--45873	20	3.6	20	81	3	101	31	19	13	35	1.91
45780--45873	41	2.3	41	98	0	179	29	18	12	39	1.88

Tables:   1

The End!