Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1213
Parameters: 2 7 7 80 10 50 1000
Length:  56421

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4690--4739
26
1.9
26
84
15
68
56
6
2
36
1.36
5483--5528
21
2.0
23
84
12
60
52
0
0
47
1.00
6595--6638
3
14.7
3
100
0
88
34
0
0
65
0.93
9157--9194
20
1.9
20
89
10
60
42
2
2
52
1.29
9347--9381
16
2.2
16
89
0
52
57
2
0
40
1.14
11118--11167
19
2.6
19
90
3
73
66
0
4
30
1.10
11580--11625
15
3.0
15
81
6
65
73
2
2
21
1.04
11580--11650
16
4.4
16
75
15
65
71
4
1
22
1.11
11680--11791
39
2.9
39
94
0
197
39
8
27
24
1.85
11675--11785
20
5.7
20
76
8
129
41
9
26
22
1.85
12644--12694
20
2.5
20
78
12
52
19
0
13
66
1.24
14589--14632
9
4.6
9
78
15
52
81
2
0
15
0.78
15203--15422
82
2.9
73
79
13
255
27
34
21
15
1.94
15260--15451
82
2.3
82
85
7
257
27
34
21
16
1.95
15105--15422
155
2.1
155
85
1
431
28
34
20
16
1.94
17107--17437
82
4.0
82
88
2
450
14
19
35
29
1.92
18011--18046
8
4.3
9
86
13
51
16
0
0
83
0.65
18007--18051
16
2.9
16
84
12
58
20
0
2
77
0.87
18529--20026
42
35.5
43
71
10
703
35
18
28
18
1.94
18529--20067
85
18.3
85
72
8
688
35
18
28
18
1.94
18569--20057
171
8.8
171
73
9
454
34
17
28
18
1.94
19310--20072
299
2.6
296
78
5
777
34
17
28
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31924--32471
279
2.0
276
92
1
909
37
15
12
34
1.85
38409--38473
20
3.6
20
73
26
81
30
15
18
35
1.92
38429--38486
13
4.9
13
72
23
65
31
15
17
36
1.91
38408--38487
33
2.4
33
100
0
160
30
15
18
36
1.92
38474--38526
20
2.6
21
84
3
72
39
15
16
28
1.89
38408--38504
33
2.9
33
92
3
124
31
16
17
34
1.92
38578--38602
13
1.9
13
100
0
50
32
16
16
36
1.90
38558--38625
33
2.1
31
86
13
93
33
17
16
32
1.92
44413--44448
13
2.8
13
95
0
63
33
19
13
33
1.91
44570--44616
22
2.3
21
89
10
71
31
17
4
46
1.67
47003--47053
20
2.6
20
87
3
68
39
19
13
27
1.90
53624--53662
19
2.1
19
85
4
53
17
0
7
74
1.05
53645--53693
16
3.1
15
82
8
62
24
2
4
69
1.17
53645--53688
15
2.9
14
81
15
52
22
2
4
70
1.17
54678--55085
84
4.9
84
85
3
507
34
17
27
19
1.95
54678--55166
252
1.9
252
81
5
594
34
17
28
19
1.95
55061--55343
85
3.3
84
78
4
302
34
19
26
19
1.95
54723--55371
42
15.4
42
71
12
352
34
18
27
19
1.95
54689--55387
84
8.3
82
76
10
413
34
17
27
20
1.95
55271--55384
42
2.7
42
82
6
133
34
18
27
20
1.96

Tables:   1

The End!