Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1214
Parameters: 2 7 7 80 10 50 1000
Length:  92295

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7860--7897
15
2.6
14
88
12
58
86
2
0
10
0.66
7862--7896
7
4.9
7
89
6
52
88
2
0
8
0.61
7860--7898
8
5.1
8
84
12
55
84
2
0
12
0.72
8952--9447
132
3.7
130
81
5
514
21
22
14
41
1.90
8974--9470
44
11.3
43
74
10
290
21
22
15
41
1.90
12191--12233
22
2.0
22
86
9
61
39
9
6
44
1.64
16128--16168
19
2.3
18
87
8
57
36
12
17
34
1.87
16197--16237
21
2.0
21
100
0
82
43
9
19
26
1.82
16762--16798
17
2.2
17
100
0
74
24
21
10
43
1.84
18537--18657
51
2.3
50
84
6
170
33
24
9
31
1.88
18672--18988
79
4.0
79
83
4
372
27
26
14
31
1.95
18672--18988
158
2.0
159
84
7
412
27
26
14
31
1.95
20777--20892
52
2.2
52
89
3
171
29
16
19
34
1.94
20881--20905
13
1.9
13
100
0
50
36
16
16
32
1.90
22323--22388
19
3.8
19
69
29
56
42
12
10
34
1.77
22323--22388
32
2.1
32
94
0
114
42
12
10
34
1.77
22354--22408
20
2.8
20
86
2
76
38
14
12
34
1.84
22375--22471
48
2.0
48
87
0
140
37
17
15
29
1.91
25411--25567
77
2.0
77
88
2
235
31
21
12
34
1.91
27988--28278
144
2.0
144
97
0
555
35
22
12
29
1.91
28718--28751
13
2.6
13
90
0
50
38
5
11
44
1.65
28666--28790
65
1.9
65
96
0
232
34
9
19
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30608--31215
163
3.7
162
79
8
562
36
10
11
40
1.77
31667--31710
22
2.0
23
86
4
63
52
6
2
38
1.41
34486--34542
14
3.7
15
75
13
62
19
7
0
73
1.05
34507--34541
17
2.1
16
94
5
61
14
5
0
80
0.89
34616--34677
28
2.2
28
82
0
70
35
3
6
54
1.42
36506--36580
19
3.9
19
87
6
107
34
18
13
33
1.90
42116--42264
52
2.9
51
85
4
208
30
16
18
34
1.92
42253--42277
13
1.9
13
100
0
50
36
16
16
32
1.90
42320--42373
20
2.7
20
85
0
72
44
14
11
29
1.80
43170--43462
48
5.9
52
79
10
285
33
16
24
25
1.96
43277--43462
43
4.1
43
79
11
219
31
17
24
26
1.97
43223--43462
97
2.5
95
86
6
324
32
16
24
26
1.96
43482--43605
28
4.3
28
83
7
135
16
15
30
37
1.90
43508--43842
29
11.1
30
76
9
188
27
15
27
29
1.96
43672--43842
59
2.9
57
76
7
173
26
18
26
28
1.98
45231--45295
1
65.0
1
78
0
67
1
0
9
89
0.56
45233--45297
16
4.1
15
86
9
85
1
0
10
87
0.61
45231--45295
20
3.3
19
85
8
85
1
0
9
89
0.56
45231--45295
21
3.3
19
87
8
85
1
0
9
89
0.56
59060--59208
52
2.9
52
86
6
212
32
16
18
32
1.93
59245--59307
33
1.9
33
86
0
90
42
15
9
31
1.79
59696--59736
20
2.0
20
85
0
55
39
9
17
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64193--64226
9
3.8
9
88
11
52
29
26
0
44
1.55
65862--65935
20
3.8
19
89
3
94
35
16
16
32
1.91
66224--66731
281
1.8
282
88
3
783
39
9
12
37
1.77
69789--69819
15
2.1
14
94
5
53
38
0
0
61
0.96
69844--69881
20
1.9
20
88
0
58
55
5
0
39
1.23
69845--69890
20
2.3
20
84
0
56
54
4
0
41
1.20
70443--70545
20
5.3
20
68
23
69
59
0
0
38
1.11
70443--70541
18
5.4
18
68
25
57
58
1
1
39
1.12
70512--70553
16
2.4
18
80
11
52
61
0
0
38
0.96
71850--71915
32
2.1
31
85
2
87
74
4
6
15
1.18
78421--78475
20
2.8
20
97
0
101
38
12
12
36
1.82
78500--78544
21
2.2
21
84
4
56
40
11
15
33
1.83
78500--78566
20
3.3
21
77
4
57
38
13
11
35
1.82
78607--78657
20
2.5
21
87
3
68
35
15
7
41
1.76
82376--82409
12
2.8
12
90
0
50
26
8
20
44
1.81
83361--83485
52
2.4
51
81
4
162
44
12
12
31
1.79
84304--84549
52
4.7
52
81
4
246
37
15
21
25
1.93
84710--85335
96
6.5
95
72
7
266
25
15
27
32
1.95
84710--85359
64
10.1
63
76
9
444
25
15
26
32
1.95
84710--84986
32
8.6
31
70
6
151
23
14
28
33
1.93
84786--85309
192
2.7
193
79
7
533
26
15
26
31
1.96
84710--85359
33
20.2
31
71
10
281
25
15
26
32
1.95

Tables:   1

The End!