Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1217
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98337
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Found at i:3679 original size:12 final size:12
Alignment explanation
Indices: 3664--3691 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
3654 TTTCTTCAAG
3664 AATTATACCCTA
1 AATTATACCCTA
3676 AATTATACCCTA
1 AATTATACCCTA
3688 AATT
1 AATT
3692 CTTAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (12 bp):
AATTATACCCTA
Found at i:8234 original size:16 final size:18
Alignment explanation
Indices: 8213--8252 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8203 GAAAACATGA
8213 TTTCAAAA-TA-GAGGTT
1 TTTCAAAATTAGGAGGTT
8229 TTTCAAAATTAGGAGGTT
1 TTTCAAAATTAGGAGGTT
*
8247 GTTCAA
1 TTTCAA
8253 CATAAACCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 2 0.10
18 11 0.52
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (18 bp):
TTTCAAAATTAGGAGGTT
Found at i:13584 original size:20 final size:20
Alignment explanation
Indices: 13559--13611 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
13549 ATTAGGCATA
** *
13559 ATGTATCGATACTTTTTACC
1 ATGTATCGATACAATGTACC
* *
13579 ATGTATCGACACAATGTCCC
1 ATGTATCGATACAATGTACC
13599 ATGTATCGATACA
1 ATGTATCGATACA
13612 TTTCACTTAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:13666 original size:20 final size:20
Alignment explanation
Indices: 13641--13730 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 20
13631 TGCCAGTTTC
13641 ATGTATCGATACAAATGAGT
1 ATGTATCGATACAAATGAGT
* * *
13661 ATGTATCGATA-TAATAAGC
1 ATGTATCGATACAAATGAGT
*
13680 ATGTATTGATAC-AAT--GT
1 ATGTATCGATACAAATGAGT
13697 ATTGTATCGATACAAA-GCA-T
1 A-TGTATCGATACAAATG-AGT
13717 AATGTATCGATACA
1 -ATGTATCGATACA
13731 TCTGGATGTG
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 2 0.04
18 10 0.18
19 20 0.35
20 24 0.42
21 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAAATGAGT
Found at i:13685 original size:19 final size:20
Alignment explanation
Indices: 13640--13693 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
13630 CTGCCAGTTT
*
13640 CATGTATCGATACAAATGAG
1 CATGTATCGATACAAATAAG
* *
13660 TATGTATCGATA-TAATAAG
1 CATGTATCGATACAAATAAG
*
13679 CATGTATTGATACAA
1 CATGTATCGATACAA
13694 TGTATTGTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAAATAAG
Found at i:15530 original size:479 final size:472
Alignment explanation
Indices: 14624--15706 Score: 1765
Period size: 479 Copynumber: 2.3 Consensus size: 472
14614 ATAATCACTA
* * * * * *
14624 AAGAGACAAACTTTGATTCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTGCAACACCAAAGCA
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
* *
14689 TCAATATCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAAGAATGAGACT
66 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCC-AATCTTGAAAAGAATGAGACT
* * *
14754 ATTATGAGAATCGAAGCTTGTCTGATTTATGGTATGATCTCTAATTTTAAGGAAAATAGGGCAAA
130 ATTATGAGAATCGAAGCTTGCCTGATTTAAGGTATGAACTCTAATTTTAAGGAAAATAGGGCAAA
*
14819 AAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTGTA
195 AAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTATTAAGGAGAATGTGTTTGTA
*
14884 GTGCCTAATCACCAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACAA
260 GTGCCTAATCACCAAAAGAATGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGTCACAA
* *
14949 CCTTAGACTTTACAAATATTGATGGGAAAAAAGCCATTCTTGCGAAACGAAAGCATCAATATCGT
325 CCTTAGACTTTACAAATATTGATGGGAAAAAAGCCATTCTTGCGAAACGAAAGCACCAATATCAT
* *
15014 GTATCCTAATGAGAATACTATATTTATGGTGCCTAATCCTGAAAAGAACAGGATTAGAATGAGTA
390 GTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAACAGGATTAGAATGAG--
15079 TTCATTCTTGTTTATCTTATTT
453 -T-ATTCTTGTTTATCTTATTT
* *
15101 AAGAGATAAATTTTGATTCTATTAAAAGTGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
15166 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGAAGAC
66 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCC-AATCTTGAAAAGAATG-AGAC
* * *
15231 TATTATGAGAATCG-AGACTTGCCTTATTTAAAGG-ATGAACTTTGATTTTAAGGAAAATAGGGC
129 TATTATGAGAATCGAAG-CTTGCCTGATTT-AAGGTATGAACTCTAATTTTAAGGAAAATAGGGC
15294 AAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTATTAAGGAGAATGTGTT
192 AAA-AAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTATTAAGGAGAATGTGTT
*
15359 TGTAGTGCCTAATCGCCAAAAGAATGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGTC
256 TGTAGTGCCTAATCACCAAAAGAATGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGTC
*
15424 ACAACCTTAGACTTTACAAATATTGATGGGAAAAAAGCCATTCTTGTGAAACGAAAGCACCAATA
321 ACAACCTTAGACTTTACAAATATTGATGGGAAAAAAGCCATTCTTGCGAAACGAAAGCACCAATA
*
15489 TCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAATAGGATTAGAATG
386 TCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAACAGGATTAGAATG
*
15554 AGTATTCTTGTTTGTCTTATTT
451 AGTATTCTTGTTTATCTTATTT
*
15576 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGTAACACCAAAGCT
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
* * * *
15641 TCAATGTCACGCATCCTAATGAAGGGAATGTATTTTCGTTTCTCAATCTTGAAAAGAATGGAGAC
66 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTC-CAATCTTGAAAAGAAT-GAGAC
15706 T
129 T
15707 GTTACTGGTG
Statistics
Matches: 566, Mismatches: 34, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
475 138 0.24
476 3 0.01
477 116 0.20
478 57 0.10
479 252 0.45
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (472 bp):
AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCCAATCTTGAAAAGAATGAGACTA
TTATGAGAATCGAAGCTTGCCTGATTTAAGGTATGAACTCTAATTTTAAGGAAAATAGGGCAAAA
AAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTATTAAGGAGAATGTGTTTGTAG
TGCCTAATCACCAAAAGAATGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGTCACAAC
CTTAGACTTTACAAATATTGATGGGAAAAAAGCCATTCTTGCGAAACGAAAGCACCAATATCATG
TATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAACAGGATTAGAATGAGTAT
TCTTGTTTATCTTATTT
Found at i:15628 original size:158 final size:159
Alignment explanation
Indices: 14987--15662 Score: 421
Period size: 159 Copynumber: 4.2 Consensus size: 159
14977 AAAAGCCATT
* * *
14987 CTTGCGAAACGAAAGCATCAATATCGTGTATCCTAATGAGAATACTATATTTATGGTGCCTAATC
1 CTTGCGAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC
* * * *
15052 CTGAAAAGAA-CAGGATTAGAATGAGTATTCATTCTTGTTTATCTTATTTAAGAGATAAATTTTG
66 CTGAAAAGAATGAAGATTAGAATGAG---T-ATTCTTGTTTGTCTTATTTAAGAGATAAACTTTG
*
15116 ATTCTATTAAAAGTGGTGGAAAGAAAAGCTTTC
127 ATTCTATTAAAAATGGTGGAAAGAAAAGCTTTC
* * * * * * * * *
15149 CTTGC-AACACCAAAGCTTCAATGTCATGCATCCTAATGA-AGGGAATGTGTTT-TGGCTTCCAA
1 CTTGCGAA-ACGAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATATTTATGG-TGCCTA
* * ** * ** * * *
15211 ATCTTGAAAAGAATGAAGACTATTATGAG-AATCGAGACTTGCCTTATTTAA-AGGATGAACTTT
63 ATCCTGAAAAGAATGAAGATTAGAATGAGTATTCTTG-TTTGTCTTATTTAAGA-GATAAACTTT
* *** * *
15274 GATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTC
126 GATTCTATTAAAAAT-GGTGGAAAGAAAAGCTTTC
* * * * * * * * * * * *
15308 CATGCAAAACAAAATCATCAATATCATTTATCCTATTAAGGAGAATGTGTTTGTAGTGCCTAATC
1 CTTGCGAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC
* * * * ** * * * * ** * * *
15373 GC-CAAAAGAATGAAGATCATTACT-AAAATCCATGTTTGTCTCATTTGAGTCACAACCTTAGA-
66 -CTGAAAAGAATGAAGATTA-GAATGAGTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGAT
* * *
15435 -CT-TTACAAATATTGATGGGAA-AAAAGCCATT-
129 TCTATTA-AAA-A-TGGTGGAAAGAAAAG-CTTTC
* * *
15466 CTTGTGAAACGAAAGCACCAATATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATC
1 CTTGCGAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC
* *
15531 CTAAAAAGAAT-AGGATTAGAATGAGTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGATTC
66 CTGAAAAGAATGAAGATTAGAATGAGTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGATTC
15595 TATTAAAAATGGTGGAAAGAAAAGCTTTC
131 TATTAAAAATGGTGGAAAGAAAAGCTTTC
* * * * * *
15624 CTTG-TAACACCAAAGCTTCAATGTCACGCATCCTAATGA
1 CTTGCGAA-ACGAAAGCATCAATATCATGTATCCTAATGA
15663 AGGGAATGTA
Statistics
Matches: 369, Mismatches: 118, Indels: 58
0.68 0.22 0.11
Matches are distributed among these distances:
156 2 0.01
157 49 0.13
158 105 0.28
159 130 0.35
160 14 0.04
161 6 0.02
162 53 0.14
163 10 0.03
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (159 bp):
CTTGCGAAACGAAAGCATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC
CTGAAAAGAATGAAGATTAGAATGAGTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGATTC
TATTAAAAATGGTGGAAAGAAAAGCTTTC
Found at i:15698 original size:158 final size:159
Alignment explanation
Indices: 14624--15675 Score: 451
Period size: 158 Copynumber: 6.6 Consensus size: 159
14614 ATAATCACTA
* * * * *
14624 AAGAGACAAACTTTGATTCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTGCAACACCAAAGCA
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
* * * *
14689 TCAATATCATGTATCCTAATGAAGGGAATGTGTTT-TGGCTTCCTAATCTTGAAAAGAATG-AGA
66 TCAATATCATGCATCCTAATGAAGGGAATGTATTTATGG-TGCCTAATCCTGAAAAGAATGAAGA
* ** * ** * *
14752 CTATTATGAG-AATCGAAGCTTGTCTGATTT
130 TTAGAATGAGTATTC-TTGTTTGTCTTATTT
* * * * * * *** * * * * * *
14782 ATG-GTATGATCTCTAATTTTAAGGAAAATAGG-GCAAA-AAAAGATTTCCATGCAAAACAAAAT
1 AAGAG-ATAAACTTTGATTCTATTAAAAAT-GGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAG
** * * * * *
14844 CATCAATATCATTTATCCTATTG-AGGAGAATGTGTTTGTAGTGCCTAATCAC-CAAAAGAATGA
64 CATCAATATCATGCATCCTAATGAAGG-GAATGTATTTATGGTGCCTAATC-CTGAAAAGAATGA
* * * * * * *
14907 AGATCATTACT-AGAATCCATGTTTGTCTCATTT
127 AGATTA-GAATGAGTATTCTTGTTTGTCTTATTT
* ** * * * * * * *
14940 GAGTCACAACCTTAGA--CT-TTACAAATATTGATGGGAA-AAAAGCCATT-CTTGCGAA-ACGA
1 AAGAGATAAACTTTGATTCTATTA-AAA-A-TGGTGGAAAGAAAAG-CTTTCCTTGC-AACACCA
* * * *
14999 AAGCATCAATATCGTGTATCCTAATG-A-GAATACTATATTTATGGTGCCTAATCCTGAAAAGAA
61 AAGCATCAATATCATGCATCCTAATGAAGGGA-A-TGTATTTATGGTGCCTAATCCTGAAAAGAA
* * *
15062 -CAGGATTAGAATGAGTATTCATTCTTGTTTATCTTATTT
124 TGAAGATTAGAATGAG---T-ATTCTTGTTTGTCTTATTT
* * *
15101 AAGAGATAAATTTTGATTCTATTAAAAGTGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
* * * * *
15166 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTT-TGGCTTCCAAATCTTGAAAAGAATGAAGA
66 TCAATATCATGCATCCTAATGAAGGGAATGTATTTATGG-TGCCTAATCCTGAAAAGAATGAAGA
* ** * ** * *
15230 CTATTATGAG-AATCGAGACTTGCCTTATTT
130 TTAGAATGAGTATTCTTG-TTTGTCTTATTT
* * *** * * * * * *
15260 AA-AGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAACAAAAT
1 AAGA-GATAAACTTTGATTCTATTAAAAAT-GGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAG
** * * * * *
15323 CATCAATATCATTTATCCT-ATTAAGGAGAATGTGTTTGTAGTGCCTAATCGC-CAAAAGAATGA
64 CATCAATATCATGCATCCTAATGAAGG-GAATGTATTTATGGTGCCTAATC-CTGAAAAGAATGA
* * * ** * * *
15386 AGATCATTACT-AAAATCCATGTTTGTCTCATTT
127 AGATTA-GAATGAGTATTCTTGTTTGTCTTATTT
* ** * * * * * * * *
15419 GAGTCACAACCTTAGA--CT-TTACAAATATTGATGGGAA-AAAAGCCATT-CTTGTGAA-ACGA
1 AAGAGATAAACTTTGATTCTATTA-AAA-A-TGGTGGAAAGAAAAG-CTTTCCTTG-CAACACCA
* * * * * *
15478 AAGCACCAATATCATGTATCCTAATG-AGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAAT
61 AAGCATCAATATCATGCATCCTAATGAAG-GGAATGTATTTATGGTGCCTAATCCTGAAAAGAAT
*
15542 -AGGATTAGAATGAGTATTCTTGTTTGTCTTATTT
125 GAAGATTAGAATGAGTATTCTTGTTTGTCTTATTT
* *
15576 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGTAACACCAAAGCT
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
* *
15641 TCAATGTCACGCATCCTAATGAAGGGAATGTATTT
66 TCAATATCATGCATCCTAATGAAGGGAATGTATTT
15676 TCGTTTCTCA
Statistics
Matches: 636, Mismatches: 199, Indels: 118
0.67 0.21 0.12
Matches are distributed among these distances:
156 12 0.02
157 129 0.20
158 221 0.35
159 145 0.23
160 12 0.02
161 39 0.06
162 56 0.09
163 17 0.03
164 5 0.01
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (159 bp):
AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
TCAATATCATGCATCCTAATGAAGGGAATGTATTTATGGTGCCTAATCCTGAAAAGAATGAAGAT
TAGAATGAGTATTCTTGTTTGTCTTATTT
Found at i:17351 original size:12 final size:12
Alignment explanation
Indices: 17321--17397 Score: 59
Period size: 12 Copynumber: 5.9 Consensus size: 12
17311 AAGAGAAAGA
*
17321 AGAGATAAGAGG
1 AGAGATAGGAGG
17333 -GATGATAGGAGG
1 AGA-GATAGGAGG
17345 AGAGATATGAGAGATAG
1 AGAGATA-G-GAG---G
17362 TAGAGATAGGAGG
1 -AGAGATAGGAGG
17375 -GATGATAGGAGG
1 AGA-GATAGGAGG
17387 AGAGATAGGAG
1 AGAGATAGGAG
17398 AGATAATAGA
Statistics
Matches: 54, Mismatches: 1, Indels: 20
0.72 0.01 0.27
Matches are distributed among these distances:
11 4 0.07
12 29 0.54
13 6 0.11
14 3 0.06
16 3 0.06
17 2 0.04
18 7 0.13
ACGTcount: A:0.42, C:0.00, G:0.44, T:0.14
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:17375 original size:42 final size:42
Alignment explanation
Indices: 17312--17430 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
17302 TAGCCCTCAA
* * * *
17312 AGAGAAAGAAGAGATAAGAGGGATGATAGGAGGAGAGATATG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
17354 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* * * *
17396 AGAGATAATAGAGAGAGGAGGGATAACAGGAGGAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAG
17431 GAGAGAAGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.45, C:0.01, G:0.43, T:0.12
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:17391 original size:24 final size:24
Alignment explanation
Indices: 17321--17406 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
17311 AAGAGAAAGA
*
17321 AGAGATAAGAGGGATGATAGGAGG
1 AGAGATAGGAGGGATGATAGGAGG
* *
17345 AGAGATATGA--GA-GAT---AGT
1 AGAGATAGGAGGGATGATAGGAGG
17363 AGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGGAGGGATGATAGGAGG
* *
17387 AGAGATAGGAGAGATAATAG
1 AGAGATAGGAGGGATGATAG
17407 AGAGAGGAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 29 0.58
ACGTcount: A:0.43, C:0.00, G:0.42, T:0.15
Consensus pattern (24 bp):
AGAGATAGGAGGGATGATAGGAGG
Found at i:17398 original size:9 final size:9
Alignment explanation
Indices: 17342--17402 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
17332 GGATGATAGG
17342 AGGAGAGAT
1 AGGAGAGAT
*
17351 ATGAGAGAT
1 AGGAGAGAT
*
17360 AGTAGAGAT
1 AGGAGAGAT
*
17369 AGGAGGGAT
1 AGGAGAGAT
* *
17378 --GATAG-G
1 AGGAGAGAT
17384 AGGAGAGAT
1 AGGAGAGAT
17393 AGGAGAGAT
1 AGGAGAGAT
17402 A
1 A
17403 ATAGAGAGAG
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 32 0.82
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.15
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:17406 original size:12 final size:12
Alignment explanation
Indices: 17366--17411 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
17356 AGATAGTAGA
*
17366 GATAGGAGGGAT
1 GATAGGAGAGAT
17378 GATAGGAGGAGA-
1 GATAGGA-GAGAT
17390 GATAGGAGAGAT
1 GATAGGAGAGAT
*
17402 AATA-GAGAGA
1 GATAGGAGAGA
17412 GGAGGGATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:17414 original size:18 final size:18
Alignment explanation
Indices: 17387--17436 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
17377 TGATAGGAGG
* *
17387 AGAGATAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAC
*
17405 AGAGAGAGGAGGGATAAC
1 AGAGAGAGGAGAGATAAC
17423 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
17437 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.46, C:0.02, G:0.44, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAC
Found at i:22834 original size:159 final size:159
Alignment explanation
Indices: 21711--28909 Score: 1265
Period size: 159 Copynumber: 45.4 Consensus size: 159
21701 GGGGTTGATG
* * * * * *
21711 AAAGCCTTTCTTGCAAAACCGAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * *
21776 TGCCTAATCCTGAAATGAACAGG-GATTAGTATGAGTATTCAGGTTTGTCATATTTAAGAGACAA
66 TACCTAATCCTAAAAAGAA-TGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAA
* *
21840 ACTTTGATTCTATCAAAAACGGTGAAAAGA
130 ACTTTGATTCTATCAAAAATGGGGAAAAGA
** * * * *
21870 AAAGCTTTTCTTGCAACCCCAAAGCATCAATGT--TGTTCACCCTAATGAA-AGGAATGTGTTT-
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATG-T-ATCCTAAT-AAGAAGAATATGTTTA
* * * * * * ** * *
21931 TCGC-ATCCAAATCATGAAAAA-AATGGAGATT-GTCACG-GGAATCGAGGCTAGGCCTTATTTA
63 T-GCTA-CCTAATCCT-AAAAAGAATGGAGATTAGT-ATGAGTATTC-ATG-TTTGTCATATTTA
** * *** * *
21992 A-AGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
122 AGA-GACAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * ** * * * * * * * *
22030 AAAGATTGTCATGCAAAAGAAAATCATCAATATTATTTATCCTATTGAGGAGAATGTGCTTATAG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-G
* * * * * * *
22095 -TGCCTAATGACC--AAAAGAATGAAGATCATTACT-AG-AATCTATGTTTGTC-TAATTTGAGT
65 CTACCTAAT--CCTAAAAAGAATGGAGATTAGTA-TGAGTATTC-ATGTTTGTCAT-ATTTAAGA
* * * * * *
22154 CACGAACTTAGACTT-TAT-AAAAATTGGTACGAA-A
125 GACAAACTTTGA-TTCTATCAAAAATGGGGA-AAAGA
* * * * * * * ** *
22188 AAAGCCTTTCCTGCGAAACCAAAGCATTAATATGATGTATCCTAATGAGAAGACTACATTTATGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * *
22253 TGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCAAGTTTGTCATATTTAATAGATAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
* *
22318 CTTTGATTCTATAAAAAACGGTGG-AAAGA
131 CTTTGATTCTATCAAAAATGG-GGAAAAGA
*** * * * *
22347 AAAGCTTTTCTTATGACACCAAAGCATTAATTTCATGTATCCTAATAA-AGGGAA-AGTGTGTT-
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGA-AGAATA-TGT-TTA
* * * * ** * * * * * * * *
22409 CGCTTCCCAATCTTAAAAAGAATGGAGGCTATTATGAG-AATCGAAGCTTGGT-TTGTTTAGGGG
63 TGCTACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTC-ATG-TTTGTCATATTTAAGAG
** * *** *** *
22472 ATGAACTTTGATTTTAAGGAAAATAACGTAAAGA
126 ACAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * ** ** * * * * * *
22506 AAAGATTTCCACGCAAAATAAAATCATCAATATCATTTATCTTGAA-GAGGAGAA-CTGTTTATA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT-AATAAGAAGAATATGTTTAT-
* * *** * * * * *
22569 G-TACCTATTCAC-AAAATGAAAAAAGATCT-TTATTAGAATCCATGTTTATC-TCA-TT-AGAG
64 GCTACCTAATC-CTAAAAAGAATGGAGAT-TAGTATGAGTATTCATGTTTGTCAT-ATTTAAGA-
*
22628 GCACGAAA-TTAGACTT-TA-CAAAAATTGGTGTGAAAA-A
125 G-AC-AAACTTTGA-TTCTATCAAAAA-TGG-G-GAAAAGA
* ** * * *
22665 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCTTAATAAGAAGACTATGTTTATGC
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * *
22730 TACCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAAGTTTGTCATATTTAAGAGATAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
22795 CTTTGATTCTATCAAAAATGGGGAAAAGA
131 CTTTGATTCTATCAAAAATGGGGAAAAGA
*** * * * *
22824 AAAGCTTTTCTTATGATACCAAAGCATCAATATCATGTATCCTAATGAAG-GGATTGTGTTT-TC
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT-
* * * * * * * * * * * **
22887 GCTTCCGAATCTTAAAAAGAATGGAGACTATTACGAGAATTGATGCTTGCCATATTTAAAAGATG
64 GCTACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACA
* ** * **
22952 AACTTTGATTTTAAGAAAAATAGGGCTAAGA
129 AACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * ** * * * *
22983 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGA-GTTTATA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAAT-ATGTTTAT-
* * * * ** * * * * * * *
23047 G-TGCCAAATCAC-CAAATGAATATATATCATTACTG-GAATCCATATTTGTC-TCATTTGAG-G
64 GCTACCTAATC-CTAAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCAT-ATTTAAGAG
* ** * **
23107 CACGAACTTAAACTT-TAT-AAAAGTTGGGGGGAA-A
126 -ACAAACTTTGA-TTCTATCAAAA-ATGGGGAAAAGA
* * * *
23141 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * *
23206 GACCTAATCC-AGAAGAA-AATGGTGATTAGTATCAGTATTCTTGTTTGTCATATTTAAGAGACA
66 TACCTAATCCTA-AA-AAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACA
* * *
23269 AACCTTT-ATTCTGTCAAAAA-CGGTAGAAAGA
129 AA-CTTTGATTCTATCAAAAATGGGGA-AAAGA
* * * * * * * *
23300 AAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAG-GGAATGTGTTTTTG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTATG
* * * * * * * *
23364 CT-TCTCAATCTTGAAAAGAATGGAGACT-GTTATGAG-AATCGATGCTTGCCTTATTTAA-AGG
65 CTACCT-AATCCTAAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCATATTTAAGA-G
** * *
23425 A-AGAACTTTGATTCTAAGAAAAATAGGGTAAAGA
126 ACA-AACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * ** * * * * * * *
23459 AAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATTCTAATGAGCAGAATGTGTTTAAG-
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * *
23523 TACCTAATCAC-AAAATGAACGAAGATCT-TTACT-AG-AATCAATGTTTGTC-TCATTTAAG-G
66 TACCTAATC-CTAAAAAGAATGGAGAT-TAGTA-TGAGTATTC-ATGTTTGTCAT-ATTTAAGAG
* * *
23582 CACGAACTTAGACTT-TA-CAAAAATTGGTGG-GAA-A
126 -ACAAACTTTGA-TTCTATCAAAAA-TGG-GGAAAAGA
* ** * * * * * * * * *
23616 AAAGCCTTTCTTGCAAAATAAAAGCATCATTATGATGCATTCGAATGAGAAGACTATGCTTATGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * * * *
23681 TGCCTAATCTTGAAAAGAACGGGGACTAGTATGAGTATTCATGTTTGTCATATCTAAGAGACAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
*
23746 CTTTGATTCTATCAAAAACGGTGG-AAAGA
131 CTTTGATTCTATCAAAAATGG-GGAAAAGA
** * * * * *
23775 AAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCATTTACCCTAATGAAG-GGAATGTGTTT-TG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT-
* * * * * * * * * * *
23838 GC-ATCCAAATCATGAAAAGAATGGAGA-TCGTTACGAG-AATCAAGGCTTGCCTTATTTAAAAG
64 GCTA-CCTAATCCTAAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCATATTTAAGAG
** * * * *** * *
23900 ATGAGCTTAGATTTTAAGGAAAATAGGGCAAAGA
126 ACAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * ** * * * * * *
23934 AAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-G
* * * * * *
23999 C-GCCTAATGACC--AAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTT--GAG
65 CTACCTAAT--CCTAAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCAT-ATTTAAGAG
* * * * *
24057 TCATGAACTTAGACTT-TA-CAAAAATTGGTAGGAA-A
126 ACA--AACTTTGA-TTCTATCAAAAATGGGGA-AAAGA
* * * * * * * *
24092 AAAGCCTTTCCTGCGAAGCCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * *
24157 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
* *
24222 CTTTGATTCTATAAAAAAAGGTGG-AAAGA
131 CTTTGATTCTATCAAAAATGG-GGAAAAGA
* * * * *
24251 AAAGCTTTTCCTATG--ACACCAAAGCATCAATTTCATGGATCCTAATAA-AGGGAATGTGTGTT
1 AAAGCTTTT-CT-TGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGA-AGAATATGT-TT
* * * ** * * * * * * *
24313 -CGCTTCCCAAT-CTAAAAAAGAATGGAGGCTATTATGTG-AATCGAAGCTTGGT-TTGTTTAA-
62 ATGCTACCTAATCCT-AAAAAGAATGGAGATTAGTATGAGTATTC-ATG-TTTGTCATATTTAAG
** * *** *** **
24373 AGGATGAACTTTGATTTTAAGGAAAATAACGTGAAGA
124 A-GACAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * ** ** * * * * *
24410 AAAGATTTCCACGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTGTA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT-AATAAGAAGAATATGTTTAT-
* *** ** * * * * **
24473 GC-ACCTAATCAC-AAAATGAAAAAAGATCTTTTCT-AGAATCCATGTTTATC-TCGTT-AGAGG
64 GCTACCTAATC-CTAAAAAGAATGGAGAT-TAGTATGAGTATTCATGTTTGTCATATTTAAGA-G
* * *
24533 CACGAACTTAGAGTT-TA-CAAAATTGGTGTG-AAA-A
126 -ACAAACTTTGA-TTCTATCAAAAATGG-G-GAAAAGA
* * * * * * *
24567 AAAGCCTTTCTTGCGAAACCAAGGCTTCAATATAATGTA---T--T--GAAGACTATGTTTATGA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * * * ** *
24625 TGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGTTTGTGTTTGTCTTATTTAAGAGACAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
*
24690 CTTTGATTCTATCAAAAACGGTGG-AAAGA
131 CTTTGATTCTATCAAAAATGG-GGAAAAGA
* * * * * * * *
24719 AAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAA-AGGAATGTGTTTTTG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTATG
** * * * * * * * *
24783 CT-TTTCAATCTTGAAAAGAATGGAGACTATTAAGAG-AATCGATGCTTGCCATATTTAA-AGGA
65 CTACCT-AATCCTAAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCATATTTAAGA-GA
** * *** * **
24845 TGAACTTTGATTTTAAGGAAAATAGGGCTAAGA
127 CAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * * ** * * * * *
24878 GAAGATTTCCATGCAAAAGAAAATCATCAATATCGT-TCATCCTAATGAGGAGAATGTGTTTATA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGT-ATCCTAATAAGAAGAATATGTTTAT-
* * * * ** * * * * **
24942 G-TGCCAAATCAC-CAAATGAATAAAGATCATTACT-AGAATCCATGTTTGTC-TCATTTAAGTC
64 GCTACCTAATC-CTAAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCAT-ATTTAAGAG
* * * *
25003 ACAAACTTAGACTT-TA-CAAAAATTGGTAGGAA-A
126 ACAAACTTTGA-TTCTATCAAAAATGGGGA-AAAGA
* * * * * * *** * *
25036 AAAGCCTTTCCTGCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTGCATTTGTGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * *
25101 TGCCTAATCCTGAAAAGAAT-GAGGATTAGTATGAGTATTCATGTTTGTCATTTTTAAGAGATAA
66 TACCTAATCCTAAAAAGAATGGA-GATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAA
* * *
25165 ACTTTGATTTTATCGAAAACGGTGG-AAAGA
130 ACTTTGATTCTATCAAAAATGG-GGAAAAGA
* * * * *
25195 AAAGCTTTTCTTACGACACCAAAGCATCAATTTCATGTATCCTAA-AA-AAGTGAATGTGTGTT-
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAA--GAATATGT-TTA
* * * * * * * * * * * * * *
25257 CGATTCCCAATCTTAAAAGGAATGGGGGCTT-TTATGAG-AATCGAAGCTTGGT-TTGTTTAA-A
63 TGCTACCTAATCCTAAAAAGAAT-GGAGATTAGTATGAGTATTC-ATG-TTTGTCATATTTAAGA
** * *** *** * *
25318 GGATGAACTTTGATTTTAAGGAAAATAACGTAAAGG
125 -GACAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * ** * * * * *
25354 AAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCTTGAAGAAG-AGAA-CTGTTTATA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT-AATAAGAAGAATATGTTTAT-
* * *** * * * * * *
25417 GC-ACCT-ATTCAAAAAATGAAAAAAGATCT-TTACT-AGAATCCATATGTATC-TCA-TT-AGA
64 GCTACCTAATCCTAAAAA-GAATGGAGAT-TAGTA-TGAGTATTCATGTTTGTCAT-ATTTAAGA
* *
25475 GGCACGAACTTAGACTTC-A-CAAAAATTGGGGTGAAAA-A
125 -G-ACAAACTTTGA-TTCTATCAAAAA-T-GGG-GAAAAGA
* * * * * *
25513 AAAGCCTTTCTTGCGAAACCAAAGCTTCAATATAATGTATCCTAATAAGAAGACTATGTTTATGA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * * * * *
25578 TGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGTTCGTGTTTGTCTTATTTAAGAGACAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
* *
25643 CTTTGATTCTGTCAAAAACGGTGG-AAAGA
131 CTTTGATTCTATCAAAAATGG-GGAAAAGA
* * * * * * * *
25672 AAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAA-AGGAATGTGTTTTTG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTATG
* * * * * ** * * * *
25736 CT-TCTCAATCTTGAAAAGAATGGAGACTATTAAAAG-AATCGATGCTTGCCATATTTAA-AGGT
65 CTACCT-AATCCTAAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCATATTTAAGA-GA
** * *** * **
25798 TGAACTTTGATTTTAAGGAAAATAGGGCTAAGA
127 CAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * * ** * * * * *
25831 GAAGATTTCCATGCAAAAGAAAATCATCAATATCGT-TCATCCTAATGAGGAGAATGTGTTTATA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGT-ATCCTAATAAGAAGAATATGTTTAT-
* * * * ** * * * * * * **
25895 G-TGCCAAATCAC-CAAATGAATAAACATCATTACT-AGAATCCATGTTTGTC-TCATTTGAGTC
64 GCTACCTAATC-CTAAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCAT-ATTTAAGAG
* * * *
25956 ACGAACTTAGACTT-TACCAAAATTGGTAGGAAAAG-
126 ACAAACTTTGA-TTCTATCAAAAATGG--GGAAAAGA
* * * * * * * ** *
25991 --AGCCTTTTC-AGCTAAACCAAAGCGTCAACATGATGTATCCTAATGAGAAGACTGCGTTTGTG
1 AAAG-CTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * *
26053 GTGCCTAATCCTGAAAAGAAT-GAGGATTAGTATGAGTATTCATGTTTGTCGTTTTTAAGAGACA
65 CTACCTAATCCTAAAAAGAATGGA-GATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACA
* *
26117 AACTTTGATTTTATCAAAAACGGTGG-AAAGA
129 AACTTTGATTCTATCAAAAATGG-GGAAAAGA
* * * *
26148 AAAGCTTTTCTTACAACACCAAAGCATCAATTTCATGTATCCTAA-AA-AAGTGAATGTGTGTT-
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAA--GAATATGT-TTA
* * * * * * ** * * * * * *
26210 CGCTTCCCAATCTTAAAAGGAATGGGGGCTATTATGAG-AATCGAAGCTTGGT-TTGTTTAA-AG
63 TGCTACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTC-ATG-TTTGTCATATTTAAGA-
** * * *** *****
26272 GATGAATTTTGATTTTAAGGAAAATAACTTAAAGA
125 GACAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * * ** * * * * *
26307 AAAGATATCCATGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTCATA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT-AATAAGAAGAATATGTTTAT-
* * *** * * * * * *
26370 G-TACCT-ATTCAAAAAATGAAAAAAGATCT-TTACT-AGAATCCATATGTATC-TCA-TT-AGA
64 GCTACCTAATCCTAAAAA-GAATGGAGAT-TAGTA-TGAGTATTCATGTTTGTCAT-ATTTAAGA
* *
26428 GGCATGAACTTAGACTT-TA-CAAAAATTGGTGTGAAAA-A
125 GACA--AACTTTGA-TTCTATCAAAAA-TGG-G-GAAAAGA
* ** * * * * *
26466 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAGTAAGAAGACTATGTTGACGC
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * *
26531 TATCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
26596 CTTTGATTCTATCAAAAATGGTGGAAAAGA
131 CTTTGATTCTATCAAAAATGG-GGAAAAGA
* * * * * * *
26626 AAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTTG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTATG
* * * * * * * * * * **
26690 CTTCCCAATCTTAAAAAGAATGGAGACTATTACGAG-AATCGATGCTTGCCATATTTAAAAGATG
65 CTACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCATATTTAAGAGACA
* *** ** **
26754 AACTTTGATTTTAAGGAAAATAAGGCTAAGA
129 AACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * ** * * * * * *
26785 AAAGATTTCCATTGTAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATA
1 AAAGCTTTTC-TTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-
** * * * * * *
26850 G-TGTCTAATGACC--AAAAGAATGAATATCATTACT-AGAATCCATGTTTGTC-TCATTT--GA
64 GCTACCTAAT--CCTAAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCAT-ATTTAAGA
* * * * * *
26908 GTCATGAACTTAGACTTC-A-AAAAAATTGGTAGGAA-A
125 GACA--AACTTTGA-TTCTATCAAAAATGGGGA-AAAGA
* * * * * * * * *
26944 AAAGCCTTTCCTGCAAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAGACTACG-TTATGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * * *
27008 TGCCTAATCCTGAAAGGAA-CGAGGATTAGTTTGAGTATTCATGTTTGTCGTATTTAAGAGACAA
66 TACCTAATCCTAAAAAGAATGGA-GATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAA
*
27072 ACTTTGATTCTATCAAAAACGGTGG-AAAGA
130 ACTTTGATTCTATCAAAAATGG-GGAAAAGA
* * * * * * * *
27102 AAAGCTTTTCTTACGACACCAAAGCATCAATGTCTTGCATCCTAATGAA-AGGAATATGTTTTTG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTATG
* * * * * * * * * *
27166 CT-TCTCAATCTTGGAAAAG-ATGGAAACT-GTTATGAGAATTGATGCTTGCCTTATTTAA-AGG
65 CTACCT-AATCCT-AAAAAGAATGGAGATTAG-TATGAGTATTCATGTTTGTCATATTTAAGA-G
** * * ** * *
27227 ATGAAGTTTGATTTTAAGAAAAATAGGGTAAAGA
126 ACAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * ** * * * * * * * *
27261 AAAGATTTCCATGCAAAATAAAATCATCAATATCGTTTATCCTAATGAGCAGATTGTGTTTGTAG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-G
** * *** * * * * *
27326 -TACCTAATCAGAAAATGAACAAAGATCT-TTACT-AGAATCCATGTTTGTCTTATTTGAG-GCA
65 CTACCTAATCCTAAAAAGAATGGAGAT-TAGTA-TGAGTATTCATGTTTGTCATATTTAAGAG-A
* *
27387 CGAACTTAGACTT-TA-CAAAAATTGGTTGG--AA-A
127 CAAACTTTGA-TTCTATCAAAAA-TGG--GGAAAAGA
* * * * * * ** * *
27419 AAAGCCTTTCTCGCAAAACCAAAGCATCATTATGATGTATCCTAATGAGAAGACTACATTTGTGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * * * *
27484 TTCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTGAGAGACAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
* * * *
27549 CTTTGATTTTATCGAAAACGCTGG-AAAGA
131 CTTTGATTCTATCAAAAATG-GGGAAAAGA
*** * * * *
27578 AAAGCTTTTCTTATGACACCAAAGCATCAATTTCATGTATCCTAATAA-AGGGAATGTGTGTT-T
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGA-AGAATATGT-TTAT
* * * ** * * * * * * * *
27641 GCTTCCTAATCTTAAAAAGAATGGGGGCTATTATAAGAATTGAAGCTTGGT-TTGTTTAA-AGGA
64 GCTACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATG-TTTGTCATATTTAAGA-GA
*** * * *** *** *
27704 TGTACTTT-TTTTTAAGGAAAATAACGTAAAGA
127 CAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * ** * * * *
27736 AAAGATTTCCATGCAAAATAAAATCATCAGTATCATTTATCCTAA-AGAGGAGAAT-TGTTTATA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATA-AGAAGAATATGTTTAT-
* * *** * * * * * *
27799 GC-ACCT-ATTCAAAAAATGAAAAAAGCTCT-TTACT-AGAATCCATGTTTATC-TCA-CTACA-
64 GCTACCTAATCCTAAAAA-GAATGGAGAT-TAGTA-TGAGTATTCATGTTTGTCAT-ATTTA-AG
* *
27857 AGCACGAACTTAGACTT-TA-CAAAAATGGGTGTGAAAA-A
124 AG-ACAAACTTTGA-TTCTATCAAAAAT-GG-G-GAAAAGA
* * * * * *
27895 AAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGTATCCTAATAAGAAGACTAAGTTTATGC
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * * *
27960 TGCCTAATCCTAAAAAGAACGGGGATTAGTATAAGTTTTCATGTTTGTCGTATTTAAGAGACAAA
66 TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
28025 CTTTGATTCTATCAAAAATGGTGG-AAAGA
131 CTTTGATTCTATCAAAAATGG-GGAAAAGA
* * * * * * *
28054 AAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAGCCTAATGAAG-GGAATGTGTTT-TC
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT-
* * ** * * * * * * * * *
28117 GCTTCCCAATGTTAAACA-AATGGAGACTATTACGAG-AATCGATGCTTGCCATATTTAAAAGAT
64 GCTACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCATATTTAAGAGAC
** * * *** * * **
28180 GGACTTTGGTTTTAAGGAAAGTAGGGCTAAGA
128 AAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * * ** * * * *
28212 AAAGATTTCCCTACAAAAGAAAATCATCAATATCAT-TCATCCTAATGAGGAGAATGTGTTTATA
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGT-ATCCTAATAAGAAGAATATGTTTAT-
* * * * * ** * * * *
28276 G-TGCCAAATCAC-CAAATGTATAAAGATCA-TCACT-AGAATCCATGTTTGTC-TCATTTGAG-
64 GCTACCTAATC-CTAAAAAGAATGGAGATTAGT-A-TGAGTATTCATGTTTGTCAT-ATTTAAGA
* * * **
28335 GCACGAACTTAGACTT-TAT-AAAAGTTGGGGGGAAG-
125 G-ACAAACTTTGA-TTCTATCAAAA-ATGGGGAAAAGA
* * * *
28370 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * *
28435 TACCTAATCCTGAAGAAA-ACA-GG-GATTAGTATCAATATTCTTATTTGTCGTATTTAAGAGAC
66 TACCTAATCCT-AA-AAAGA-ATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGAC
* * *
28497 AAACCTTCATTCTGTCAAAAATGGTGG-AAAGA
128 AAACTTTGATTCTATCAAAAATGG-GGAAAAGA
* *** ** * * * ** * *
28529 AAAGCTTTTCTTACGGCACCAAAGCATCAAGGTCACGCATCCTAATGAGGGGAATGTGTTTTTGC
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
* * * * * * * * * *
28594 T-TCTCAATCTTGAGAAGAATTGAGACT-GTTATGAG-AATCAATGCTTGCCTTATTTAA-AGGA
66 TACCT-AATCCTAAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCATATTTAAGA-GA
** * ** * *
28655 TGAACTTTGATTTTAAGAAAAATAGGGTAAAGA
127 CAAACTTTGATTCTATCAAAAATGGGGAAAAGA
* * * ** * * * * *
28688 AAAGATTTCCATGCAAAATTAAATCATCAATATCATTTATCCTAATGAGTAGAATGTGTTTATAG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-G
* * * * * * ** *
28753 -TACCTAATCAC-AAAATGAATGAAGATCT-TTACTG-GAATCCTTGTTTGTCCCATTTGAG-GT
65 CTACCTAATC-CTAAAAAGAATGGAGAT-TAGTA-TGAGTATTCATGTTTGTCATATTTAAGAG-
* *
28813 ACAAACTTAGACTT-TA-CAAAAATTGGTGG-GAA-A
126 ACAAACTTTGA-TTCTATCAAAAA-TGG-GGAAAAGA
* * * * * * *
28846 AAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATGTATTCGAATGAGAAGACTATGTTTATG
1 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
28910 GTGTCTACAT
Statistics
Matches: 4923, Mismatches: 1653, Indels: 930
0.66 0.22 0.12
Matches are distributed among these distances:
150 12 0.00
151 48 0.01
152 45 0.01
153 3 0.00
154 1 0.00
155 3 0.00
156 35 0.01
157 303 0.06
158 1378 0.28
159 2383 0.48
160 606 0.12
161 91 0.02
162 15 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (159 bp):
AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGC
TACCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
CTTTGATTCTATCAAAAATGGGGAAAAGA
Found at i:23291 original size:953 final size:948
Alignment explanation
Indices: 21711--31834 Score: 12464
Period size: 953 Copynumber: 10.7 Consensus size: 948
21701 GGGGTTGATG
* * *
21711 AAAGCCTTTCTTGCAAAACCGAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
* * * * *
21776 TGCCTAATCCTGAAATGAACAGGGATTAGTATGAGTATTCAGGTTTGTCATATTTAAGAGACAAA
66 TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * *
21841 CTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCAACCCCAAAGCATCAATGT--T
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * * * * * * *
21904 GTTCACCCTAATGAAAGGAATGTGTTTTCGCATCCAAATCATGAAAAAAATGGAGATTGTCACGG
196 G-T-ATCCTAATGAAGGGAATGTGTTTTTGCTTCC-AATCTTGAAAAGAATGGAGACTATTATGA
* * *
21969 GAATCGAGGCTAGGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
258 GAATCGATGCT-TGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAAAAG
* * *
22034 ATTGT-CATGCAAAAGAAAATCATCAATATTATTTATCCTATTGAGGAGAATGTGCTTATAGTGC
322 ATT-TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
22098 CTAATGACCAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTAATTTGAGTCACGAACTT
386 CTAATCACCAAATGAAT-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* ** * * *
22163 AGACTTTATAAAAATTGGTACGAAAAAAGCCTTTCCTGCGAAACCAAAGCATTAATATGATGTAT
450 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTAT
**
22228 CCTAATGAGAAGACTACATTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTC
515 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGAGTATTC
* * * * *
22293 AAGTTTGTCATATTTAATAGATAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCT
579 ATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
22358 TATGACACCAAAGCATTAATTTCATGTATCCTAATAAAGGGAAAGTGTGTTCGCTTCCCAATCTT
644 TACGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTT
** * **
22423 AAAAAGAATGGAGGCTATTATGAGAATCGAAGCTTGGTTTGTTTAGGGGATGAACTTTGATTTTA
709 AAAAAGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTTA
* * *
22488 AGGAAAATAACGTAAAGAAAAGATTTCCACGCAAAATAAAATCATCAATATCATTTATCTTGAAG
774 AGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AAG
* * * *
22553 AGGAGAA-CTGTTTATAGTACCTATTCACAAAATGAAAAAAGATCTTTATTAGAATCCATGTTTA
838 AGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTG
* *
22617 TCTCATTAGAGGCACGAAATTAGACTTTACAAAAATTGGTGTGAAAAA
903 TCTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTG-G-GAAA
* * *
22665 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCTTAATAAGAAGACTATGTTTATGC
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
* * * * *
22730 TACCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAAGTTTGTCATATTTAAGAGATAAA
66 TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * *
22795 CTTTGATTCTATCAAAAATGG-GGAAAAGAAAAGCTTTTCTTATGATACCAAAGCATCAATATCA
131 CTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
* * * *
22859 TGTATCCTAATGAAGGGATTGTGTTTTCGCTTCCGAATCTTAAAAAGAATGGAGACTATTACGAG
195 TGTATCCTAATGAAGGGAATGTGTTTTTGCTTCC-AATCTTGAAAAGAATGGAGACTATTATGAG
* * * *
22924 AATTGATGCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGAAAAATAGGGCTAAGAAAAGAT
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAAAAGAT
* *
22989 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTGCCAA
324 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
23054 ATCACCAAATGAATATATATCATTACTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAAA
389 ATCACCAAATGAATA-AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
23119 CTTTATAAAAGTTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG-TGTATCC
453 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT-GATGTATCC
* * *
23183 TAATAAGAAGACTATGTTTATGG-GACCTAATCCAGAAGAA-AATGGTGATTAGTATCAGTATTC
517 TAATGAGAAGACTATGTTTATGGTG-CCTAATCCTGAA-AAGAATGG-GATTAGTATGAGTATTC
* * * *
23246 TTGTTTGTCATATTTAAGAGACAAACCTTT-ATTCTGTCAAAAACGGTAGAAAGAAAAGCTTTTC
579 ATGTTTGTCGTATTTAAGAGACAAA-CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
23310 TTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCT
643 TTACGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCT
* * * * * *
23375 TGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTAAAGGAAGAACTTTGATTCT
708 TAAAAAGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
* * *
23440 AAGAAAAATAGGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATTCTAAT
773 AAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAA-
* ** *
23505 GAGCAGAATGTGTTTA-AGTACCTAATCACAAAATGAACGAAGATCTTTACTAGAATCAATGTTT
837 GAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCATGTTT
23569 GTCTCATTTA-AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
902 GTCTCA-TTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* ** * * * * * *
23616 AAAGCCTTTCTTGCAAAATAAAAGCATCATTATGATGCATTCGAATGAGAAGACTATGCTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
* * * * *
23681 TGCCTAATCTTGAAAAGAACGGGGACTAGTATGAGTATTCATGTTTGTCATATCTAAGAGACAAA
66 TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * *
23746 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * * *
23811 TTACCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGGAGA-TCGTTACGAG
196 GTATCCTAATGAAGGGAATGTGTTTTTGCTTCC-AATCTTGAAAAGAATGGAGACT-ATTATGAG
* * * * * *
23875 AATCAAGGCTTGCCTTATTTAAAAGATGAGCTTAGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAAAAGAT
* * *
23940 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGCGCCTA
324 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
24005 ATGACCAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCATGAACTTAGA
389 ATCACCAAATGAAT-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
24070 CTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAGCCAAAGCATCAATATGATGTATCCT
453 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCT
24135 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
518 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATG
* * * *
24200 TTTGTCGTATTTAAGAGACAAACTTTGATTCTATAAAAAAAGGTGGAAAGAAAAGCTTTTCCTAT
582 TTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTAC
* * *
24265 GACACCAAAGCATCAATTTCATGGATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTAAAA
647 GACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTTAAA
* ** *
24330 AAGAATGGAGGCTATTATGTGAATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGG
712 AAGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGG
* * *
24395 AAAATAACGTGAAGAAAAGATTTCCACGCAAAATAAAATCATCAATATCATTTATCCTGAAGAGG
777 AAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AAGAGG
* * * *
24460 AGAAT-TGTTTGTAGCACCTAATCACAAAATGAAAAAAGATCTTTTCTAGAATCCATGTTTATCT
841 AGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGTCT
* * *
24524 CGTTAGAGGCACGAACTTAGAGTTTAC-AAAATTGGTGTGAAAA
906 CATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAAA
* * * *
24567 AAAGCCTTTCTTGCGAAACCAAGGCTTCAATATAATGTA---T--T--GAAGACTATGTTTATGA
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
* * * * * ** *
24625 TGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGTTTGTGTTTGTCTTATTTAAGAGACAAA
66 TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
24690 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * *
24755 GCATCCTAATGAAAGGAATGTGTTTTTGCTTTTCAATCTTGAAAAGAATGGAGACTATTAAGAGA
196 GTATCCTAATGAAGGGAATGTGTTTTTGC-TTCCAATCTTGAAAAGAATGGAGACTATTATGAGA
* *
24820 ATCGATGCTTGCCATATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAGAAGATT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAAAAGATT
* * *
24885 TCCATGCAAAAGAAAATCATCAATATCGTTCATCCTAATGAGGAGAATGTGTTTATAGTGCCAAA
325 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
24950 TCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGTCACAAACTTAGAC
390 TCACCAAATGAAT-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * *
25015 TTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCATCAATATAATGTATCCTA
454 TTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTA
*** *
25080 ATGAGAAGACTGCATTTGTGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGT
519 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATGT
* * * * *
25145 TTGTCATTTTTAAGAGATAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACG
583 TTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACG
* * * *
25210 ACACCAAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGATTCCCAATCTTAAAA
648 ACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTTAAAA
* * * ** *
25275 GGAATGGGGGCTTTTATGAGAATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGA
713 AGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGA
* * * *
25340 AAATAACGTAAAGGAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCTTGAAGAAGA
778 AAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AAGAGGA
* * * * * * *
25405 GAA-CTGTTTATAGCACCTATTCAAAAAATGAAAAAAGATCTTTACTAGAATCCATATGTATCTC
842 GAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGTCTC
*
25469 ATTAGAGGCACGAACTTAGACTTCACAAAAATTGG-GGTGAAAAA
907 ATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGG-G--AAA
* * *
25513 AAAGCCTTTCTTGCGAAACCAAAGCTTCAATATAATGTATCCTAATAAGAAGACTATGTTTATGA
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
* * * * * * *
25578 TGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGTTCGTGTTTGTCTTATTTAAGAGACAAA
66 TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
*
25643 CTTTGATTCTGTCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * **
25708 GCATCCTAATGAAAGGAATGTGTTTTTGCTTCTCAATCTTGAAAAGAATGGAGACTATTAAAAGA
196 GTATCCTAATGAAGGGAATGTGTTTTTGCTTC-CAATCTTGAAAAGAATGGAGACTATTATGAGA
* * *
25773 ATCGATGCTTGCCATATTTAAAGGTTGAACTTTGATTTTAAGGAAAATAGGGCTAAGAGAAGATT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAAAAGATT
* * *
25838 TCCATGCAAAAGAAAATCATCAATATCGTTCATCCTAATGAGGAGAATGTGTTTATAGTGCCAAA
325 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* *
25903 TCACCAAATGAATAAACATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGAC
390 TCACCAAATGAAT-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * * * *
25968 TTTACCAAAATTGGTAGGAAAAGAGCCTTT-TCAGCTAAACCAAAGCGTCAACATGATGTATCCT
454 TTTACAAAAATTGGTGGGAAAAAAGCCTTTCT-TGCAAAACCAAAGCATCAATATGATGTATCCT
** *
26032 AATGAGAAGACTGCGTTTGTGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATG
518 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATG
* *
26097 TTTGTCGTTTTTAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTAC
582 TTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTAC
* * * *
26162 AACACCAAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGCTTCCCAATCTTAAA
647 GACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTTAAA
* * ** * *
26227 AGGAATGGGGGCTATTATGAGAATCGAAGCTTGGTTTGTTTAAAGGATGAATTTTGATTTTAAGG
712 AAGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGG
** *
26292 AAAATAACTTAAAGAAAAGATATCCATGCAAAATAAAATCATCAATATCATTTATCCTGAAGAGG
777 AAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AAGAGG
* * * * * *
26357 AGAAT-TGTTCATAGTACCTATTCAAAAAATGAAAAAAGATCTTTACTAGAATCCATATGTATCT
841 AGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGTCT
* *
26421 CATTAGAGGCATGAACTTAGACTTTACAAAAATTGGTGTGAAAAA
906 CATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTG-G-GAAA
* * * * *
26466 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAGTAAGAAGACTATGTTGACGC
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
* *
26531 TATCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
66 TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
*
26596 CTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
131 CTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
* *
26661 TGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAATGGAGACTATTACGAG
195 TGTATCCTAATGAAGGGAATGTGTTTTTGCTT-CCAATCTTGAAAAGAATGGAGACTATTATGAG
* * *
26726 AATCGATGCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAAGGCTAAGAAAAGAT
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAAAAGAT
* * *
26791 TTCCATTGTAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCT
324 TTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * *
26856 AATGACCAAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCATGAACTTAG
388 AATCACCAAATGAAT-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * *
26921 ACTTCAAAAAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCGTCAATATGATGTATCC
452 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCC
* * * * *
26986 TAATGAGGAGACTACG-TTATGGTGCCTAATCCTGAAAGGAACGAGGATTAGTTTGAGTATTCAT
517 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCAT
27050 GTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTA
581 GTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTA
* * * * * *
27115 CGACACCAAAGCATCAATGTCTTGCATCCTAATGAAA-GGAATATGTTTTTGCTTCTCAATCTTG
646 CGACACCAAAGCATCAATGTCATGTATCCTAAT-AAAGGGAATGTGTGTTCGCTTCCCAATCTT-
* ** * * * *
27179 GAAAAG-ATGGAAACTGTTATGAGAATTGATGCTTGCCTTATTTAAAGGATGAAGTTTGATTTTA
709 AAAAAGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTTA
* * *
27243 AGAAAAATAGGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCGTTTATCCTAATG
774 AGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAA-G
* * * * *
27308 AGCAGATTGTGTTTGTAGTACCTAATCAGAAAATGAACAAAGATCTTTACTAGAATCCATGTTTG
838 AGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTG
* * *
27373 TCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAA
903 TCTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * * ** *
27419 AAAGCCTTTCTCGCAAAACCAAAGCATCATTATGATGTATCCTAATGAGAAGACTACATTTGTGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
* * *
27484 TTCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTGAGAGACAAA
66 TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * * *
27549 CTTTGATTTTATCGAAAACGCTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATTTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * *
27614 GTATCCTAATAAAGGGAATGTGTGTTTGCTTCCTAATCTTAAAAAGAATGGGGGCTATTATAAGA
196 GTATCCTAATGAAGGGAATGTGTTTTTGCTTCC-AATCTTGAAAAGAATGGAGACTATTATGAGA
* * ** * * * **
27679 ATTGAAGCTTGGTTTGTTTAAAGGATGTACTTT-TTTTTAAGGAAAATAACG-TAAAGAAAAGAT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCT-AAGAAAAGAT
* * * **
27742 TTCCATGCAAAATAAAATCATCAGTATCATTTATCCTAAAGAGGAGAAT-TGTTTATAGCACCTA
324 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* ** * * * * * ** *
27806 TTCAAAAAATGAAAAAAGCTCTTTACTAGAATCCATGTTTATCTCACTACAAGCACGAACTTAGA
389 ATCACCAAATG-AATAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
27871 CTTTACAAAAATGGGTGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGTATC
453 CTTTACAAAAATTGGTG-G-GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATC
* * * * * * *
27936 CTAATAAGAAGACTAAGTTTATGCTGCCTAATCCTAAAAAGAACGGGGATTAGTATAAGTTTTCA
516 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCA
*
28001 TGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTT
580 TGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * * *
28066 ACGACACCAAAGCATCAATGTCATGTAGCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATGTTA
645 ACGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTTA
* * * * * * * *
28131 AACA-AATGGAGACTATTACGAGAATCGATGCTTGCCATATTTAAAAGATGGACTTTGGTTTTAA
710 AAAAGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAA
* * * * * *
28195 GGAAAGTAGGGCT-AAGAAAAGATTTCCCTACAAAAGAAAATCATCAATATCATTCATCCTAATG
775 GGAAAATAAGG-TAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAA-G
* * * * * * *
28259 AGGAGAATGTGTTTATAGTGCCAAATCACCAAATGTATAAAGATCATCACTAGAATCCATGTTTG
838 AGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTG
* * * * *
28324 TCTCATTTGAGGCACGAACTTAGACTTTATAAAAGTTGGGGGGAAG
903 TCTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
*
28370 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG-TGTATCCTAATAAGAAGACTATGTTTATG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTATG
* * * * *
28434 GTACCTAATCCTGAAGAA-AACAGGGATTAGTATCAATATTCTTATTTGTCGTATTTAAGAGACA
65 GTACCTAATCCTGAA-AAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACA
* * * * * *
28498 AACCTTCATTCTGTCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGGCACCAAAGCATCAAGGTC
129 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTC
* * * * * *
28563 ACGCATCCTAATGAGGGGAATGTGTTTTTGCTTCTCAATCTTGAGAAGAATTGAGACTGTTATGA
194 ATGTATCCTAATGAAGGGAATGTGTTTTTGCTTC-CAATCTTGAAAAGAATGGAGACTATTATGA
* *
28628 GAATCAATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGAAAAATAGGG-TAAAGAAAAG
258 GAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCT-AAGAAAAG
** * *
28692 ATTTCCATGCAAAATTAAATCATCAATATCATTTATCCTAATGAGTAGAATGTGTTTATAGTACC
322 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * * * *
28757 TAATCACAAAATGAATGAAGATCTTTACTGGAATCCTTGTTTGTCCCATTTGAGGTACAAACTTA
387 TAATCACCAAATGAAT-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* *
28822 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATGTATT
451 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATC
*
28887 CGAATGAGAAGACTATGTTTATGGTG-----T-C------------------------TA--CAT
516 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCAT
* * ** * *
28920 GTTTGTCATATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTAAAAAGATAAGCTTTTCTTG
581 GTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTA
* * * ** * * * * * * *
28985 CAACCCCAAAGCATCAATGTCATTTGCCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGA
646 CGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTTAA
* ** * * *
29050 AAAGAATGGAGACTGCTACGAGAATCGAGGCTTGCCTTATTTAAATGATGAACTTTGATTTTAAG
711 AAAGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAG
* * * * *
29115 GAAAATAGGGCAAAGAAAAGATTTTCATAC-AAA-AAAATCATCAATATCATTTATCCTATTGAG
776 GAAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTA-AGAG
* * ** * *
29178 GAGAATGTGTTTATAGTGCCTAATGACCAAAA-GAATGAAGATCATTACTAAAATCCATGTTTGT
840 GAGAATGTGTTTATAGTACCTAATCA-CAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGT
* * * * *
29242 CTCATTTGAAGCATGAACTTAGACTTTATAAAAATTGG-GGGAAG
904 CTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * *
29286 AAAGCCTTTCATGCGAAACCAAAGCATCAATGTCG-TGTATCCTATTAAGAAGACTACGTTTATG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTATG
* * * * * *
29350 GTACCAAATCCTAAAAAAAATGGGGATTATTATCG-GTATTCTTGTTTGTCGTATTTAAGAGACA
65 GTACCTAATCCTGAAAAGAACGGGGATTAGTAT-GAGTATTCATGTTTGTCGTATTTAAGAGACA
* *
29414 AACTTTGATTCTGTCAAAAACGGTAGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTC
129 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTC
* * * *
29479 ATGCATCCTAATGAAAGCAATGTGTTTTTGCTTCTCAATCTTGAAACGAATGGAGAC-AGTTATG
194 ATGTATCCTAATGAAGGGAATGTGTTTTTGCTTC-CAATCTTGAAAAGAATGGAGACTA-TTATG
* * * *
29543 AGAATCGATGCTTGCCTTATTTAAAAGATGAACTTTGATTTTAAGAAAAATA-GGATAAATAAAA
257 AGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCT-AAGAAAA
* * * *
29607 GATTTCCAAGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTAC
321 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * * *
29672 CTAATCACAAAATTAAGGAAGATCTTTACTAGAATCTATGTTTGTTTCATTTGAGGCACGAACAT
386 CTAATCACCAAATGAA-TAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * **
29737 AGACTTTTCAAAAATTGGTGGGAGAAAAGCCTTTCTTGCAAAACCAAAGCATCTTTATGATGTAT
450 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTAT
* *
29802 -TTGAATGAGAA-ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATT
515 CCT-AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATT
*
29865 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
578 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * * * * *
29930 TTTTA-G-CCCCAAAGCATCAATGTCATTTACCCTGATGAGGGGAATGTGTTTTGGCATCCAAAT
643 --TTACGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAAT
* * * * *
29993 CATGAAAAGAATGG-GGACTGTTACGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGAT
706 CTTAAAAAGAATGGAGG-CTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGAT
* * * *
30057 TTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
770 TTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCT
* * * * *
30122 ATTGAGGAGAATGTGTTTATAGTGCCTAATGACCAAAA-GAATAAAGATCATTACTAGAATCCAT
835 A-AGAGGAGAATGTGTTTATAGTACCTAATCA-CAAAATGAAAAAAGATCTTTACTAGAATCCAT
* * * *
30186 GTTTGTCTCATTTGAGTCACGAACTTAGACTTTACGAAAATTGGTAGGAAA
898 GTTTGTCTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * *
30237 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTGTGTTTGTGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
* * * * *
30302 TGCCTAATCCTGAAAAGAACGAGGATTACTATGAGTATTCATGTTTGTCGTTTTTAAGAGATAAA
66 TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * * * * * * *
30367 CTTTGATTTTATCGAAAACGGTGGAAAGAAAAACTTTTCCTATGACACCAAAGAATCCATTTCAC
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * * * *
30432 GTATCCTAATAAAGTGAATGTGTGTTCGAATCCCAATCTT-AAAAGGAATGGGGGCTATTATGAG
196 GTATCCTAATGAAGGGAATGTGTTTTTG-CTTCCAATCTTGAAAA-GAATGGAGACTATTATGAG
* ** * **
30496 AATCGAAGCTTGGTTTCTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACG-TAAAGAAAAGA
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCT-AAGAAAAGA
* * *
30560 TTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TTTTTATAGTACC
323 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCC
* ** * * * * * *
30623 TATTCAAAAAATGAAAAAAGAT-ATTTACTAG-ATCTATATGTATCTCATTAGAGGCACGAACTT
387 TAATCACCAAATG-AATAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * *
30686 AGACTTTACAAAAATTGGTGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGT
450 AGACTTTACAAAAATTGGTG-G-GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGT
* * * * *
30751 ATCCTAATAAGAAGACTATGTTTACGCTGTCTAATCCTAAAAAGAATGGTGATTAGTATGAGTAT
513 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGAGTAT
* * *
30816 TCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTAGAAAAAAAAAGCTTT
577 TCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GGAAAGAAAAGCTTT
* * * *
30881 TCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAAT
641 TCTTACGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAAT
* * * * * *
30946 CTTAAAAAGAATGGAGACTATTACGAGAATCGATGATTGCCATATTTAAAAGATGAACTTTGATT
706 CTTAAAAAGAATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATT
* *
31011 TTAAGGAAAATAAGGCT-AAGAAAAGATTTCCATTGTAAAAGAAAATCATCAATATCATTTATCC
771 TTAAGGAAAATAAGG-TAAAGAAAAGATTTCCA-TGCAAAATAAAATCATCAATATCATTTATCC
* * * * *
31075 TAATGAGGAGAATGTGTTTATAGTGCCAAATCACTAAATGAATAAAGATCATTACTAGAATCCAT
834 TAA-GAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCAT
* * * * * * *
31140 GTTTGTCTCATTTGAGGCGCAAATTTAGACTTTATAAAAATTGGGGGGAAG
898 GTTTGTCTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
*
31191 AAAGCCTTTCTTGCGAAACTAAAGCATCAA-ATTG-TGTATCCTAATAAGAAGACTATGTTTATG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TGATGTATCCTAATAAGAAGACTATGTTTATG
* * * * * * *
31254 GTACCTAAT-CTCGAAAAAAACGGTGATTATTTTCAGTATTCTTGTGTGTCGTATTTAAGAGACA
65 GTACCTAATCCT-GAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACA
* * * *
31318 AACTTTGATTCTGTCACAAACGATGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAGTGTC
129 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTC
* *
31383 ATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCTTGAAAAGAATGGAGACTGTTATGA
194 ATGTATCCTAATGAAGGGAATGTGTTTTTGCTTC-CAATCTTGAAAAGAATGGAGACTATTATGA
* * * * *
31448 GTATCGATGCTTGCCTTATTTAAAGGATCAACTTTGATTTTAAGAAAAATA-AGATAAAGAAAAG
258 GAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCT-AAGAAAAG
* * * **
31512 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGCAGAATGTGTTTATAGCACC
322 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
31577 TAATCACAAAATGAACGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
387 TAATCACCAAATGAA-TAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * *
31642 GACTTTAC-AAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATT
451 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATC
* * * * *
31706 CAAATGACAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCA
516 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCA
* *
31771 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAA-AAAAGCTTTTCTT
580 TGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
31835 GCAACCCCAA
Statistics
Matches: 8068, Mismatches: 952, Indels: 304
0.87 0.10 0.03
Matches are distributed among these distances:
915 19 0.00
916 475 0.06
917 114 0.01
918 124 0.02
919 79 0.01
920 2 0.00
943 2 0.00
944 797 0.10
945 12 0.00
946 45 0.01
947 1 0.00
948 209 0.03
949 120 0.01
950 249 0.03
951 1791 0.22
952 612 0.08
953 2220 0.28
954 881 0.11
955 314 0.04
956 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (948 bp):
AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGG
TACCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
GTATCCTAATGAAGGGAATGTGTTTTTGCTTCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
TCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAAAAGATTT
CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
CACCAAATGAATAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
TACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAAT
GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTG
TCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACA
CCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTTAAAAAGA
ATGGAGGCTATTATGAGAATCGAAGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAA
TAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAAGAGGAGAAT
GTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGTCTCATTA
GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
Found at i:23323 original size:476 final size:476
Alignment explanation
Indices: 21711--28910 Score: 8966
Period size: 476 Copynumber: 15.1 Consensus size: 476
21701 GGGGTTGATG
* *
21711 AAAGCCTTTCTTGCAAAACCGAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* ** * *
21776 TGCCTAATCCTGAAATGAACAGGGATTAGTATGAGTATTCAGGTTTGTCATATTTAAGAGACAAA
66 -GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * *
21841 CTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCAACCCCAAAGCATCAATGT--T
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * * * * *
21904 GTTCACCCTAATGAAAGGAATGTGTTTTCGCATCCAAATCATGAAAAA-AATGGAGATTGTCACG
195 G-T-ATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATC-TTAAAAAGAATGGAGACTATTATG
* * *
21968 GGAATCGAGGCTAGGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAAGAAA
257 AGAATCGATGCT-TGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAA
* * * *
22032 AGATTGT-CATGCAAAAGAAAATCATCAATATTATTTATCCTATTGAGGAGAATGTGCTTATAGT
321 AGATT-TCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * * * *
22096 GCCTAATGACCAAAA-GAATGAAGATCATTACTAGAATCTATGTTTGTCTAATTTGAGTCACGAA
385 ACCTAATCA-CAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* **
22160 CTTAGACTTTATAAAAATTGGTACGAAA
449 CTTAGACTTTACAAAAATTGGTGGGAAA
* * **
22188 AAAGCCTTTCCTGCGAAACCAAAGCATTAATATGATGTATCCTAATGAGAAGACTACATTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
22253 TGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCAAGTTTGTCATATTTAATAGATAAA
66 -GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * *
22318 CTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATTAATTTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * *
22383 GTATCCTAATAAAGGGAAAGTGTGTTCGCTTCCCAATCTTAAAAAGAATGGAGGCTATTATGAGA
195 GTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAGA
* ** * ** **
22448 ATCGAAGCTTGGTTTGTTTAGGGGATGAACTTTGATTTTAAGGAAAATAACG-TAAAGAAAAGAT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGAT
* * *
22512 TTCCACGCAAAATAAAATCATCAATATCATTTATCTTGAA-GAGGAGAA-CTGTTTATAGTACCT
325 TTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCT
* * * * * *
22575 ATTCACAAAATGAAAAAAGATCTTTATTAGAATCCATGTTTATCTCATTAGAGGCACGAAATTAG
389 AATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
*
22640 ACTTTACAAAAATTGGTGTGAAAAA
454 ACTTTACAAAAATTGGTG-G-GAAA
* * *
22665 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCTTAATAAGAAGACTATGTTTATGC
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG-
** * * * *
22730 TACCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAAGTTTGTCATATTTAAGAGATAAA
65 GGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * *
22795 CTTTGATTCTATCAAAAATGG-GGAAAAGAAAAGCTTTTCTTATGATACCAAAGCATCAATATCA
130 CTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
* * *
22859 TGTATCCTAATGAAGGGATTGTGTTTTCGCTTCCGAATCTTAAAAAGAATGGAGACTATTACGAG
194 TGTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAG
* * * *
22924 AATTGATGCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGAAAAATAGGGCT-AAGAAAAGA
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGA
* * * *
22988 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTGCCA
324 TTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCT
* * * * * * *
23053 AATCACCAAATGAATATATATCATTACTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAA
389 AATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
23118 ACTTTATAAAAGTTGGGGGGAAA
454 ACTTTACAAAAATTGGTGGGAAA
* *
23141 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG-TGTATCCTAATAAGAAGACTATGTTTATG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
23205 GGACCTAATCCAGAAGAA-AATGGTGATTAGTATCAGTATTCTTGTTTGTCATATTTAAGAGACA
65 GG-CCTAATCCTGAA-AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACA
* *
23269 AACCTTT-ATTCTGTCAAAAACGGTAGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGT
128 AA-CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGT
* * * * *
23333 CATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCTTGAAAAGAATGGAGACTGTTATG
192 CATGTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATG
* * *
23398 AGAATCGATGCTTGCCTTATTTAAAGGAAGAACTTTGATTCTAAGAAAAATAGGG-TAAAGAAAA
257 AGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAA
* *
23462 GATTTCCATGCAAAATAAAATCATCAATATCATTTATTCTAATGAGCAGAATGTGTTTA-AGTAC
322 GATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTAC
** * *
23526 CTAATCACAAAATGAACGAAGATCTTTACTAGAATCAATGTTTGTCTCATTTAAGGCACGAACTT
387 CTAATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
23591 AGACTTTACAAAAATTGGTGGGAAA
452 AGACTTTACAAAAATTGGTGGGAAA
* ** * * * * *
23616 AAAGCCTTTCTTGCAAAATAAAAGCATCATTATGATGCATTCGAATGAGAAGACTATGCTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
23681 TGCCTAATCTTGAAAAGAACGGGGACTAGTATGAGTATTCATGTTTGTCATATCTAAGAGACAAA
66 -GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * *
23746 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * * * * *
23811 TTACCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGGAGA-TCGTTACGAG
195 GTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACT-ATTATGAG
* * * * *
23875 AATCAAGGCTTGCCTTATTTAAAAGATGAGCTTAGATTTTAAGGAAAATAGGGC-AAAGAAAAGA
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGA
* * * **
23939 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGCGCCT
324 TTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCT
* * * * *
24004 AATGACCAAAA-GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCATGAACTTA
389 AATCA-CAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
*
24068 GACTTTACAAAAATTGGTAGGAAA
453 GACTTTACAAAAATTGGTGGGAAA
* *
24092 AAAGCCTTTCCTGCGAAGCCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
24157 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
66 -GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * * *
24222 CTTTGATTCTATAAAAAAAGGTGGAAAGAAAAGCTTTTCCTATGACACCAAAGCATCAATTTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * *
24287 GGATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTAAAAAAGAATGGAGGCTATTATGTGA
195 GTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAGA
* ** * ** *
24352 ATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACG-TGAAGAAAAGAT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGAT
* * *
24416 TTCCACGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTGTAGCACCT
325 TTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCT
* * * * *
24479 AATCACAAAATGAAAAAAGATCTTTTCTAGAATCCATGTTTATCTCGTTAGAGGCACGAACTTAG
389 AATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* *
24544 AGTTTAC-AAAATTGGTGTGAAAA
454 ACTTTACAAAAATTGGTG-GGAAA
* * *
24567 AAAGCCTTTCTTGCGAAACCAAGGCTTCAATATAATGTA---T--T--GAAGACTATGTTTATGA
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG-
* * * * ** *
24625 TGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGTTTGTGTTTGTCTTATTTAAGAGACAAA
65 GGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
24690 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * ** * *
24755 GCATCCTAATGAAAGGAATGTGTTTTTGCTTTTCAATCTTGAAAAGAATGGAGACTATTAAGAGA
195 GTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAGA
* *
24820 ATCGATGCTTGCCATATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCT-AAGAGAAGAT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGAT
* * * * *
24884 TTCCATGCAAAAGAAAATCATCAATATCGTTCATCCTAATGAGGAGAATGTGTTTATAGTGCCAA
325 TTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTA
* * * * *
24949 ATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGTCACAAACTTAGA
390 ATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
*
25014 CTTTACAAAAATTGGTAGGAAA
455 CTTTACAAAAATTGGTGGGAAA
* * *** *
25036 AAAGCCTTTCCTGCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTGCATTTGTGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
25101 TGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCATTTTTAAGAGATAAA
66 -GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * *
25166 CTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATTTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
** * * * * * * *
25231 GTATCCTAAAAAAGTGAATGTGTGTTCGATTCCCAATCTTAAAAGGAATGGGGGCTTTTATGAGA
195 GTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAGA
* ** * ** *
25296 ATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACG-TAAAGGAAAGAT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGAT
* * * *
25360 TTCCATGCAAAATAAAATCATCAATATCATTTATCTTGAA-GAAGAGAA-CTGTTTATAGCACCT
325 TTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCT
* * * * * * *
25423 ATTCAAAAAATGAAAAAAGATCTTTACTAGAATCCATATGTATCTCATTAGAGGCACGAACTTAG
389 AATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
*
25488 ACTTCACAAAAATTGG-GGTGAAAAA
454 ACTTTACAAAAATTGGTGG-G--AAA
* * *
25513 AAAGCCTTTCTTGCGAAACCAAAGCTTCAATATAATGTATCCTAATAAGAAGACTATGTTTATGA
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG-
* * * * * *
25578 TGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGTTCGTGTTTGTCTTATTTAAGAGACAAA
65 GGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
*
25643 CTTTGATTCTGTCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * **
25708 GCATCCTAATGAAAGGAATGTGTTTTTGCTTCTCAATCTTGAAAAGAATGGAGACTATTAAAAGA
195 GTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAGA
* * *
25773 ATCGATGCTTGCCATATTTAAAGGTTGAACTTTGATTTTAAGGAAAATAGGGCT-AAGAGAAGAT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGAT
* * * * *
25837 TTCCATGCAAAAGAAAATCATCAATATCGTTCATCCTAATGAGGAGAATGTGTTTATAGTGCCAA
325 TTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTA
* * * *
25902 ATCACCAAATGAATAAACATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGA
390 ATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
25967 CTTTACCAAAATTGGTAGGAAA
455 CTTTACAAAAATTGGTGGGAAA
* * * * * ** *
25989 AGAGCCTTT-TCAGCTAAACCAAAGCGTCAACATGATGTATCCTAATGAGAAGACTGCGTTTGTG
1 AAAGCCTTTCT-TGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* *
26053 GTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTTTTTAAGAGACAA
65 G-GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAA
* * *
26118 ACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATTTCA
129 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
** * * * * *
26183 TGTATCCTAAAAAAGTGAATGTGTGTTCGCTTCCCAATCTTAAAAGGAATGGGGGCTATTATGAG
194 TGTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAG
* ** * * *
26248 AATCGAAGCTTGGTTTGTTTAAAGGATGAATTTTGATTTTAAGGAAAATA--ACTTAAAGAAAAG
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGC-TAAAGAAAAG
* *
26311 ATATCCATGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTCATAGTAC
323 ATTTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTAC
* * * * * * * *
26374 CTATTCAAAAAATGAAAAAAGATCTTTACTAGAATCCATATGTATCTCATTAGAGGCATGAACTT
387 CTAATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
*
26439 AGACTTTACAAAAATTGGTGTGAAAAA
452 AGACTTTACAAAAATTGGTG-G-GAAA
* * * * *
26466 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAGTAAGAAGACTATGTTGACGC
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG-
*** * *
26531 TATCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
65 GGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
*
26596 CTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
130 CTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
* *
26661 TGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAATGGAGACTATTACGAG
194 TGTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAG
* * *
26726 AATCGATGCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAAGGCT-AAGAAAAGA
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGA
* * * **
26790 TTTCCATTGTAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTC
324 TTTCCA-TGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACC
* * * * * *
26855 TAATGACCAAAA-GAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCATGAACTT
388 TAATCA-CAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * *
26919 AGACTTCAAAAAAATTGGTAGGAAA
452 AGACTTTACAAAAATTGGTGGGAAA
* * * * *
26944 AAAGCCTTTCCTGCAAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAGACTACG-TTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
27008 TGCCTAATCCTGAAAGGAACGAGGATTAGTTTGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
66 -GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
*
27073 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * * * * *
27138 GCATCCTAATGAAAGGAATATGTTTTTGCTTCTCAATCTTGGAAAAG-ATGGAAACTGTTATGAG
195 GTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTT-AAAAAGAATGGAGACTATTATGAG
* * *
27202 AATTGATGCTTGCCTTATTTAAAGGATGAAGTTTGATTTTAAGAAAAATAGGG-TAAAGAAAAGA
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGA
* * * *
27266 TTTCCATGCAAAATAAAATCATCAATATCGTTTATCCTAATGAGCAGATTGTGTTTGTAGTACCT
324 TTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCT
* * *
27331 AATCAGAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAG
389 AATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
*
27396 ACTTTACAAAAATTGGTTGGAAA
454 ACTTTACAAAAATTGGTGGGAAA
* * * ** *
27419 AAAGCCTTTCTCGCAAAACCAAAGCATCATTATGATGTATCCTAATGAGAAGACTACATTTGTGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
27484 TTCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTGAGAGACAAA
66 -GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * * * *
27549 CTTTGATTTTATCGAAAACGCTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATTTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * * *
27614 GTATCCTAATAAAGGGAATGTGTGTTT-GCTTCCTAATCTTAAAAAGAATGGGGGCTATTATAAG
195 GTATCCTAATGAAGGGAATGTGT-TTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAG
* * ** * * * **
27678 AATTGAAGCTTGGTTTGTTTAAAGGATGTACTTT-TTTTTAAGGAAAATAACG-TAAAGAAAAGA
259 AATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGA
* * *
27741 TTTCCATGCAAAATAAAATCATCAGTATCATTTATCCTAAAGAGGAGAAT-TGTTTATAGCACCT
324 TTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCT
* * * * * * ** *
27805 ATTCAAAAAATGAAAAAAGCTCTTTACTAGAATCCATGTTTATCTCACTACAAGCACGAACTTAG
389 AATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* *
27870 ACTTTACAAAAATGGGTGTGAAAAA
454 ACTTTACAAAAATTGGTG-G-GAAA
* * *
27895 AAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGTATCCTAATAAGAAGACTAAGTTTATGC
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG-
* * * * *
27960 TGCCTAATCCTAAAAAGAACGGGGATTAGTATAAGTTTTCATGTTTGTCGTATTTAAGAGACAAA
65 GGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
*
28025 CTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCAT
* * * *
28090 GTAGCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATGTTAAACA-AATGGAGACTATTACGAGA
195 GTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAGA
* * * * *
28154 ATCGATGCTTGCCATATTTAAAAGATGGACTTTGGTTTTAAGGAAAGTAGGGCT-AAGAAAAGAT
260 ATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGAT
* * * * * *
28218 TTCCCTACAAAAGAAAATCATCAATATCATTCATCCTAATGAGGAGAATGTGTTTATAGTGCCAA
325 TTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTA
* * * *
28283 ATCACCAAATGTATAAAGATCATCACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
390 ATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
28348 CTTTATAAAAGTTGGGGGGAAG
455 CTTTACAAAAATTGGTGGGAAA
* *
28370 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG-TGTATCCTAATAAGAAGACTATGTTTATG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATG
* ** * * * *
28434 GTACCTAATCCTGAAGAA-AACAGGGATTAGTATCAATATTCTTATTTGTCGTATTTAAGAGACA
65 G-GCCTAATCCTGAA-AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACA
* * * * * *
28498 AACCTTCATTCTGTCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGGCACCAAAGCATCAAGGTC
128 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTC
* * * * * * * * *
28563 ACGCATCCTAATGAGGGGAATGTGTTTTTGCTTCTCAATCTTGAGAAGAATTGAGACTGTTATGA
193 ATGTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGA
* *
28628 GAATCAATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGAAAAATAGGG-TAAAGAAAAG
258 GAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAG
* *
28692 ATTTCCATGCAAAATTAAATCATCAATATCATTTATCCTAATGAGTAGAATGTGTTTATAGTACC
323 ATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACC
* * * * * *
28757 TAATCACAAAATGAATGAAGATCTTTACTGGAATCCTTGTTTGTCCCATTTGAGGTACAAACTTA
388 TAATCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
28822 GACTTTACAAAAATTGGTGGGAAA
453 GACTTTACAAAAATTGGTGGGAAA
* * * *
28846 AAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATGTATTCGAATGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
28911 TGTCTACATG
Statistics
Matches: 5757, Mismatches: 874, Indels: 185
0.84 0.13 0.03
Matches are distributed among these distances:
467 2 0.00
468 283 0.05
469 112 0.02
470 10 0.00
472 2 0.00
474 117 0.02
475 1250 0.22
476 2302 0.40
477 1189 0.21
478 367 0.06
479 44 0.01
480 75 0.01
481 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (476 bp):
AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAAC
TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATG
TATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTAAAAAGAATGGAGACTATTATGAGAA
TCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCTAAAGAAAAGATT
TCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAA
TCACAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
TTTACAAAAATTGGTGGGAAA
Found at i:30160 original size:159 final size:155
Alignment explanation
Indices: 28967--31693 Score: 616
Period size: 159 Copynumber: 17.2 Consensus size: 155
28957 AAAACGGTAA
* * ** * **
28967 AAAGATAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCATTTGCCCTAATGAAGG-GAATGTGT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATGTGT
* * ** * * *
29031 TT-TGGCAT-CCAAATCATGAAAAGAATGGAGACTGCTACGAGAATCGAGGCTTGCCTTATTTAA
65 TTATAG--TGCCTAATCACCAAAAGAATGGAGACTGTTACGAGAATCGATGTTTGCCTTATTT-A
*
29094 ATGATGAACTTTGATTTTAAGGAAAATAGGG
127 AGGATGAACTTTGATTTTAA--AAAATAGGG
* * * *
29125 CAAAGAAAAGATTTTCATACAAAA--AAATCATCAATATCATTTATCCTATTGAGGAGAATGTGT
1 -AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * * * * *
29188 TTATAGTGCCTAATGACCAAAAGAATGAAGA-TCATTACTAAAATCCATGTTTGTCTCATTTGAA
65 TTATAGTGCCTAATCACCAAAAGAATGGAGACT-GTTACGAGAATCGATGTTTGCCTTATTT-AA
* * * *
29252 GCATGAACTTAGACTTTATAAAAATTGGGG
128 GGATGAACTTTGA-TTT-TAAAAAATAGGG
* * * * * * * * * * **
29282 GAAG-AAAGCCTTTCATGCGAAACCAAAGCATCAATGTCGTGTATCCTATTAAGAAGACTACGTT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * * * * * * * * *
29346 TATGGTACCAAATC-CTAAAAAAAATGGGGATTATTATCG-GTATTC-TTGTTTGTCGTATTTAA
66 TATAGTGCCTAATCAC-CAAAAGAATGGAGACTGTTA-CGAG-AATCGATGTTTGCCTTATTTAA
** * *
29408 GAGACAAACTTTGATTCTGTCAAAAA-CGGTAG
128 G-GATGAACTTTGATT-T-TAAAAAATAGG--G
* * * * * ** *
29440 AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGA-AAGCAATGTGT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAG-AATGTGT
*** * * * *
29504 TT-T--TGCTTCTCAATCTTGAAACGAATGGAGACAGTTATGAGAATCGATGCTTGCCTTATTTA
65 TTATAGTGC--CT-AATCACCAAAAGAATGGAGACTGTTACGAGAATCGATGTTTGCCTTATTT-
* *
29566 AAAGATGAACTTTGATTTTAAGAAAAATAGGAT
126 AAGGATGAACTTTGATTTT-A-AAAAATAGG-G
* * * * ** * *
29599 AAATAAAAGATTTCCAAGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * * *
29664 TATAGTACCTAATCA-CAAAATTAA-GGAAGATCT-TTACTAGAATCTATGTTTG-TTTCATTTG
66 TATAGTGCCTAATCACCAAAA-GAATGG-AGA-CTGTTACGAGAATCGATGTTTGCCTT-ATTTA
* * * * *
29725 AGGCACGAACATAGACTTTTCAAAAATTGGTG
127 AGG-ATGAACTTTGA-TTTTAAAAAATAGG-G
** * * ** * * * *
29757 GGAGAAAAGCCTTTCTTGCAAAACCAAAGCATCTTTATGATGTAT-TTGAATGA-GA-AACTATG
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCT-AATGAGGAGAA-TGTG
* *** * * * * * *
29819 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCGTATTTA
64 TTTATAGTGCCTAATCACCAAAAGAATGGAGACT-GTTACGAG-AATCGATGTTTGCCTTATTTA
** * *
29882 AGAGACAAACTTTGATTCTATCAAAAA-CGGTG
127 AG-GATGAACTTTGATT-T-TAAAAAATAGG-G
* ** *** * * * *
29914 AAAAGAAAAGCTTTTCTTTTAGCCCCAAAGCATCAATGTCATTTACCCTGATGAGGGGAATGTGT
1 -AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * ** * * *
29979 TT-TGGCAT-CCAAATCATGAAAAGAATGGGGACTGTTACGAGAATCGAGGCTTGCCTTATTTAA
65 TTATAG--TGCCTAATCACCAAAAGAATGGAGACTGTTACGAGAATCGATGTTTGCCTTATTT-A
30042 AGGATGAACTTTGATTTTAAGGAAAATAGGG
127 AGGATGAACTTTGATTTTAA--AAAATAGGG
* ** * *
30073 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGT
1 -AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* ** * * * * * *
30138 TTATAGTGCCTAATGACCAAAAGAATAAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAG
65 TTATAGTGCCTAATCACCAAAAGAATGGAGACT-GTTACGAGAATCGATGTTTGCCTTATTTAAG
* * * * * *
30202 TCACGAACTTAGACTTTACGAAAATTGGTAG
129 -GATGAACTTTGATTTTA-AAAAATAGG--G
* * * ** * * * *
30233 GAA-AAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTGTGTT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * * ** * * *
30297 TGTGGTGCCTAATC-CTGAAAAGAA-CGAGGATTACTATGAGTATTC-ATGTTTGTCGTT-TTTA
66 TATAGTGCCTAATCAC-CAAAAGAATGGA-GACTGTTACGAG-AATCGATGTTTG-CCTTATTTA
* * **
30358 AGAGATAAACTTTGATTTTATCGAAAACGGTGG
127 AG-GATGAACTTTGATTTTA--AAAAATAG-GG
* * * * * ** * * *
30391 AAAGAAAAACTTTTCCTATG--ACACCAAAGAATCCATTTCACGTATCCTAATAAAGTGAATGTG
1 AAAGAAAAGCTTTT-C-ATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTG
** * * ** * * * * * * ** *
30454 TGTTCGAAT-CCCAATC-TTAAAAGGAATGGGGGCTATTATGAGAATCGAAGCTTGGTTTCTTTA
64 T-TTATAGTGCCTAATCACCAAAA-GAATGGAGACTGTTACGAGAATCGATGTTTGCCTTATTT-
* *
30517 AAGGATGAACTTTGATTTTAAGGAAAATAACGT
126 AAGGATGAACTTTGATTTTAA--AAAAT-AGGG
* * ** * *
30550 AAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TTT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCT-AATGAGGAGAATGTGT
* * * *** * * * * * ** *
30613 TTATAGTACCTATTCA-AAAAATGAAAAAAGA-TATTTACTAG-ATCTATATGTATCTCA-TTAG
65 TTATAGTGCCTAATCACCAAAA-GAATGGAGACT-GTTACGAGAATCGATGTTTGCCTTATTTA-
* * * *
30674 AGGCACGAACTTAGACTTTACAAAAATTGGTGTG
127 AGG-ATGAACTTTGATTTTA-AAAAA-TAG-G-G
* * * * * * * * * * *
30708 AAAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGTATCCTAATAAGAAGACTATGTT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * * * * * *
30773 TA-CGCTGTCTAATC-CTAAAAAGAATGGTGATTAG-TATGAGTATTC-ATGTTTGTCGTATTTA
66 TATAG-TGCCTAATCAC-CAAAAGAATGGAGACT-GTTACGAG-AATCGATGTTTGCCTTATTTA
** *
30834 AGAGACAAACTTTGATTCTATCAAAAAT-GGTAG
127 AG-GATGAACTTTGATT-T-TAAAAAATAGG--G
* * * *
30867 AAAAAAAAAGCTTTTCTTATG--ACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATG
1 -AAAGAAAAGCTTTTC--ATGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATG
* * * *** * * *
30929 TGTTT-TTGCTTCCCAATCTTAAAAAGAATGGAGACTATTACGAGAATCGATGATTGCCATATTT
62 TGTTTATAG-TGCCTAATCACCAAAAGAATGGAGACTGTTACGAGAATCGATGTTTGCCTTATTT
* *
30993 AAAAGATGAACTTTGATTTTAAGGAAAATAAGGC
126 -AAGGATGAACTTTGATTTTAA--AAAAT-AGGG
* * * * ** *
31027 TAAGAAAAGATTTCCATTGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
1 AAAGAAAAGCTTTTCA-TGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * ** * * * * * *
31092 TTATAGTGCCAAATCACTAAATGAATAAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAG
65 TTATAGTGCCTAATCACCAAAAGAATGGAGACT-GTTACGAGAATCGATGTTTGCCTTATTTAAG
* * * *
31156 G-CGCAAATTTAGACTTTATAAAAATTGGGGG
129 GATG-AACTTT-GA-TTT-TAAAAAAT-AGGG
* * * * * ** * * * * *
31187 GAAG-AAAGCCTTTCTTGCGAAACTAAAGCATCAA-ATTGTGTATCCTAATAAGAAGACTATGTT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * * * * * * * * * * * *
31250 TATGGTACCTAATCTCGAAAAAAACGGTGATTATTTTC-AGTATTC-TTGTGTGTCGTATTTAAG
66 TATAGTGCCTAATCACCAAAAGAATGGAGACT-GTTACGAG-AATCGATGTTTGCCTTATTTAAG
** * ** *
31313 AGACAAACTTTGATTCTGTCACAAACGATGG
129 -GATGAACTTTGATT-T-T-AAAAAATAGGG
* * * * * * **
31344 AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAGTGTCATGCATCCTAATGAAGG-GAATGTGT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATGTGT
*** * * *
31408 TT-T--TGCTTCTCAATCTTGAAAAGAATGGAGACTGTTATGAGTATCGATGCTTGCCTTATTTA
65 TTATAGTGC--CT-AATCACCAAAAGAATGGAGACTGTTACGAGAATCGATGTTTGCCTTATTT-
* **
31470 AAGGATCAACTTTGATTTTAAGAAAAATAAGAT
126 AAGGATGAACTTTGATTTT-A-AAAAAT-AGGG
* ** * * *
31503 AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGCAGAATGTGTT
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
** * * * * * * *
31568 TATAGCACCTAATCA-CAAAATGAACGAAGATCT-TTACTAGAATCCATGTTTGTCTCATTTGAG
66 TATAGTGCCTAATCACCAAAA-GAATGGAGA-CTGTTACGAGAATCGATGTTTGCCTTATTTAAG
* * * * *
31631 GCACGAACTTAGACTTTACAAAATTGGTGG
129 G-ATGAACTTTGATTTTA-AAAAATAG-GG
* * * *
31661 GAA-AAATGCCTTTCTTGCAAAACCAAAGCATCA
1 AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCA
31694 TTATGATCTA
Statistics
Matches: 1818, Mismatches: 590, Indels: 322
0.67 0.22 0.12
Matches are distributed among these distances:
155 15 0.01
156 36 0.02
157 350 0.19
158 412 0.23
159 707 0.39
160 264 0.15
161 23 0.01
162 11 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (155 bp):
AAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
TATAGTGCCTAATCACCAAAAGAATGGAGACTGTTACGAGAATCGATGTTTGCCTTATTTAAGGA
TGAACTTTGATTTTAAAAAATAGGG
Found at i:30716 original size:476 final size:475
Alignment explanation
Indices: 28917--31834 Score: 3611
Period size: 475 Copynumber: 6.1 Consensus size: 475
28907 ATGGTGTCTA
* * ** *
28917 CATGTTTGTCATATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTAAAAAGATAAGCTTTTC
1 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
*** * * ** * * *
28982 TTGCAACCCCAAAGCATCAATGTCATTTGCCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCA
66 TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC-
* ** * * *
29047 TGAAAAGAATGGAGACTGCTACGAGAATCGAGGCTTGCCTTATTTAAATGATGAACTTTGATTTT
130 TTAAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
** * * *
29112 AAGGAAAAT-AGGGCAAAGAAAAGATTTTCATAC-AAA-AAAATCATCAATATCATTTATCCTAT
195 AAGGAAAATAAGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * *
29174 TGAGGAGAATGTGTTTATAGTGCCTAATGACCAAAA-GAATGAAGATCATTACTAAAATCCATGT
260 TGAGGAGAATGTGTTTATAGTACCTAATCA-CAAAATGAATAAAGATCATTACTAGAATCCATGT
* * * * *
29238 TTGTCTCATTTGAAGCATGAACTTAGACTTTATAAAAATTGG-GGGAAGAAAGCCTTTCATGCGA
324 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGA
* * * * * *
29302 AACCAAAGCATCAATGTCG-TGTATCCTATTAAGAAGACTACGTTTATGGTACCAAATCCTAAAA
389 AACCAAAGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* * *
29366 AAAATGGGGATTATTATCG-GTATT
453 AGAA-CGGGATTAGTAT-GAGTATT
* * *
29390 CTTGTTTGTCGTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGGTAGAAAGAAAAGCTTTTC
1 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
29455 TTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAAGCAATGTGTTTTTGCTTCTCAATCT
66 TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCT
* *
29520 TGAAACGAATGGAGAC-AGTTATGAGAATCGATGCTTGCCTTATTTAAAAGATGAACTTTGATTT
131 T-AAAAGAATGGAGACTA-TTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTT
* * * *
29584 TAAGAAAAAT-AGGATAAATAAAAGATTTCCAAGCAAAATAAAATCATCAATATCATTTATCCTA
194 TAAGGAAAATAAGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * ** * *
29648 ATGAGCAGAATGTGTTTATAGTACCTAATCACAAAATTAAGGAAGATCTTTACTAGAATCTATGT
259 ATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGT
* * * * *
29713 TTGTTTCATTTGAGGCACGAACATAGACTTTTCAAAAATTGGTGGGAGAAAAGCCTTTCTTGCAA
324 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGA
** * * *
29778 AACCAAAGCATCTTTATGATGTAT-TTGAATGAGAA-ACTATGTTTATGGTGCCTAATCTTGAAA
389 AACCAAAGCATCAATATGATGTATCCT-AATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
*
29841 AGAATGGGGATTAGTATGAGTATT
453 AGAA-CGGGATTAGTATGAGTATT
*
29865 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
1 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * * * *
29930 TT-TTAGCCCCAAAGCATCAATGTCATTTACCCTGATGAGGGGAATGTGTTTTGGCATCCAAATC
66 TTATGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC
* * * * *
29994 ATGAAAAGAATGGGGACTGTTACGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTT
130 -TTAAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTT
** *
30059 TAAGGAAAAT-AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
194 TAAGGAAAATAAGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
30123 TTGAGGAGAATGTGTTTATAGTGCCTAATGACCAAAA-GAATAAAGATCATTACTAGAATCCATG
259 ATGAGGAGAATGTGTTTATAGTACCTAATCA-CAAAATGAATAAAGATCATTACTAGAATCCATG
* * * *
30187 TTTGTCTCATTTGAGTCACGAACTTAGACTTTACGAAAATTGGTAGGAAAAAAGCCTTTCTTGTG
323 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG
* * *
30252 AAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTGTGTTTGTGGTGCCTAATCCTGAAA
388 AAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
*
30317 AGAACGAGGATTACTATGAGTATT
453 AGAACG-GGATTAGTATGAGTATT
* * * * *
30341 CATGTTTGTCGTTTTTAAGAGATAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAACTTTTC
1 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * * * * **
30406 CTATGACACCAAAGAATCCATTTCACGTATCCTAATAAAGTGAATGTGTGTTCGAATCCCAATCT
66 TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCT
* * * ** *
30471 TAAAAGGAATGGGGGCTATTATGAGAATCGAAGCTTGGTTTCTTTAAAGGATGAACTTTGATTTT
131 TAAAA-GAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
* *
30536 AAGGAAAATAACG-TAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGA
195 AAGGAAAATAAGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-A
* * * * * *
30600 A-GAGGAGAAT-TTTTTATAGTACCTATTCAAAAAATGAAAAAAGAT-ATTTACTAG-ATCTATA
259 ATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCA-TTACTAGAATCCATG
* * * *
30661 TGTATCTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGTGAAAAAAAAGCCTTTCTTG
323 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-G-GAAAAAAGCCTTTCTTG
* * * * *
30726 CGAAACCAAAGCTTCAATATGATGTATCCTAATAAGAAGACTATGTTTACGCTGTCTAATCCTAA
386 CGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGA
*
30791 AAAGAATGGTGATTAGTATGAGTATT
451 AAAGAACGG-GATTAGTATGAGTATT
* * *
30817 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTAGAAAAAAAAAGCTTTT
1 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GGAAAGAAAAGCTTTT
30882 CTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC
65 CTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC
* * * *
30947 TTAAAAAGAATGGAGACTATTACGAGAATCGATGATTGCCATATTTAAAAGATGAACTTTGATTT
130 TT-AAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTT
* *
31012 TAAGGAAAATAAGGCT-AAGAAAAGATTTCCATTGTAAAAGAAAATCATCAATATCATTTATCCT
194 TAAGGAAAATAAGGATAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
31076 AATGAGGAGAATGTGTTTATAGTGCCAAATCACTAAATGAATAAAGATCATTACTAGAATCCATG
258 AATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATG
* * * * * *
31141 TTTGTCTCATTTGAGGCGCAAATTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTCTTGCG
323 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG
* *
31206 AAACTAAAGCATCAA-ATTG-TGTATCCTAATAAGAAGACTATGTTTATGGTACCTAAT-CTCGA
388 AAACCAAAGCATCAATA-TGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCT-GA
* * * *
31268 AAAAAACGGTGATTATTTTCAGTATT
451 AAAGAACGG-GATTAGTATGAGTATT
* * * * *
31294 CTTGTGTGTCGTATTTAAGAGACAAACTTTGATTCTGTCACAAACGATGGAAAGAAAAGCTTTTC
1 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * *
31359 TTACGACACCAAAGCATCAGTGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCT
66 TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCT
* * *
31424 TGAAAAGAATGGAGACTGTTATGAGTATCGATGCTTGCCTTATTTAAAGGATCAACTTTGATTTT
131 T-AAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
* *
31489 AAGAAAAATAA-GATAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
195 AAGGAAAATAAGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * ** *
31553 CGAGCAGAATGTGTTTATAGCACCTAATCACAAAATGAACGAAGATCTTTACTAGAATCCATGTT
260 TGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTT
* *
31618 TGTCTCATTTGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAATGCCTTTCTTGCAAA
325 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
* * * * * * * *
31682 ACCAAAGCATCATTATGATCTATTCAAATGACAAGACTATGTTTATGGTGTCTAATCTTGAAAAG
390 ACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
31747 AACAGGGATTAGTATGAGTATT
455 AAC-GGGATTAGTATGAGTATT
* *
31769 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAA-AAAAGCTTTTC
1 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
31833 TT
66 TT
31835 GCAACCCCAA
Statistics
Matches: 2095, Mismatches: 310, Indels: 79
0.84 0.12 0.03
Matches are distributed among these distances:
472 1 0.00
473 192 0.09
474 113 0.05
475 770 0.37
476 613 0.29
477 251 0.12
478 76 0.04
479 36 0.02
480 43 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCT
TAAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTA
AGGAAAATAAGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
CCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
ACGGGATTAGTATGAGTATT
Found at i:34465 original size:476 final size:476
Alignment explanation
Indices: 33678--34899 Score: 1482
Period size: 476 Copynumber: 2.6 Consensus size: 476
33668 CCTAAACGTG
* * *
33678 GCTTGCCTTATTT-AAAGAATGAACTTTGATTGTAAGGAAAATAGGGC-AAAGAAAAGATTTTCA
1 GCTTGCCATATTTAAAAG-ATGAACTTTGATTTTAAGGAAAATA--ACTAAAGAAAAGATTTTCA
* * *
33741 TGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGAC
63 TGCAAAAGAAAATCATCAATATCATTTATCCTA-AGAGGAGAATGTGTTTATAGTGCCTAATCA-
** * *
33806 CAAAA-GAGTGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTT
126 CAAAATGA-AAAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * *
33870 ACAAAAATT--TGT-AGGAAAGAAGCCTTTCCTGCGAAACCAAAGCGTGAATATGATGTATCCTA
190 ACAAAAATTGGTGTGA-GAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTA
* * ** * * *
33932 ATGAGAAGACTATGTTTGTGGTGCCTAATCCTGAAAAGAAAGAGGATTAGCATGAGTATTCATGT
254 ATAAGAAGACTATGTATACGCTGCCTAATCCTAAAAAGAAAGAGGATTAGCATGAGTACTCATGT
* * * * * *
33997 TTGTCGTTTTTAAGAGATAAACTTTGATTTTATCGAAAACGGTGG-AATGAAAAGCTTTTCTTGC
319 TTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAGAAAAGCTTTTCTTAC
* * *
34061 GACACCAAAGCATCAATTTCATGTATCCTAAAAAAGTG-AATGTGTGTTCGATTCCTAATCTTAA
384 GACACCAAAGCATCAATGTCATGTATCCTAAAAAAG-GAAATGTGTGTTCGATTCCCAATCCTAA
* * * *
34125 AAGGAATGGTGGCCATTAGGAGAATCGAA
448 AAAGAATGGAGACCATTACGAGAATCGAA
*** * ** *
34154 GCTTGGTTTGTTTAACGGATGAACTTTGATTTTAAGGAAAATAACATAAAGAAAAGATTTCCATG
1 GCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAAC-TAAAGAAAAGATTTTCATG
* * ** *
34219 CAAAATAAAATCATCAATATCATTTATCCTGAAGAGGAGAAT-TGTTTATAGTACCTGTTCAAAA
65 CAAAAGAAAATCATCAATATCATTTATCCT-AAGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * * * *
34283 AATGAAAAAAATCTTTACTAGAATCCATATGTATCTTATTAGAGGCACGAACTTAGATTTTACAA
129 AATGAAAAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
*
34348 AAATTGGTGTGAAAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATAAG
194 AAATTGGTGTGAGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATAAG
* * * *
34413 AAGACTATGTATACGCTGTCTAATCCTAAAAAGAACGGGGATTAGTATGAGTACTCATGTTTGTC
259 AAGACTATGTATACGCTGCCTAATCCTAAAAAGAAAGAGGATTAGCATGAGTACTCATGTTTGTC
*
34478 GTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGACAC
324 GTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAGAAAAGCTTTTCTTACGACAC
** * * *
34543 CAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGCTTCCCAATCCTAAAAAGAA
389 CAAAGCATCAATGTCATGTATCCTAAAAAAGGAAATGTGTGTTCGATTCCCAATCCTAAAAAGAA
* *
34608 TGGAGACTATTACGAGAATCGAT
454 TGGAGACCATTACGAGAATCGAA
*
34631 GCTTGCCATATTTAAAAGTTGAACTTTGATTTTAAGGAAAATAAGGCT-AAGAAAAGATTTTCAT
1 GCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAA--CTAAAGAAAAGATTTTCA-
* *
34695 TGTAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCAAATCAC
63 TGCAAAAGAAAATCATCAATATCATTTATCCTAA-GAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * *
34760 TAAATGAATAAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGGCGCAAATTTAGACTTTA
127 AAAATGAA-AAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * *
34825 TAAAAATTGG-G-GGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAA-ATCG-TGTATCCTAA
191 CAAAAATTGGTGTGAGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT-GATGTATCCTAA
34886 TAAGAAGACTATGT
255 TAAGAAGACTATGT
34900 TTATGGCACC
Statistics
Matches: 631, Mismatches: 98, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
474 59 0.09
475 16 0.03
476 229 0.36
477 177 0.28
478 73 0.12
479 24 0.04
480 53 0.08
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
GCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAACTAAAGAAAAGATTTTCATGC
AAAAGAAAATCATCAATATCATTTATCCTAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
TGAAAAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
ATTGGTGTGAGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATAAGAA
GACTATGTATACGCTGCCTAATCCTAAAAAGAAAGAGGATTAGCATGAGTACTCATGTTTGTCGT
ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAGAAAAGCTTTTCTTACGACACCA
AAGCATCAATGTCATGTATCCTAAAAAAGGAAATGTGTGTTCGATTCCCAATCCTAAAAAGAATG
GAGACCATTACGAGAATCGAA
Found at i:34645 original size:160 final size:160
Alignment explanation
Indices: 34332--34645 Score: 334
Period size: 160 Copynumber: 2.0 Consensus size: 160
34322 TAGAGGCACG
* **
34332 AACTTAGATTTTACAAAAATTGGTGTGAAAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT
1 AACTTAGATTCTACAAAAATTGGTGTGAAAAAAAAGCCTTTCTTACGAAACCAAAGCATCAATAT
* * * * *
34397 GATGTATCCTAATAAGAAGACTATGTATACGCTGTCTAATCCTAAAAAGAACGGGGATTAGTATG
66 CATGTATCCTAATAAGAAGACTATGTATACGCTGTCCAATCCTAAAAAGAACGGAGACTAGTACG
* * * *
34462 AGTACTCATGTTTGTCGTATTTAAGAGACA
131 AGTAATCATGCTTGCCATATTTAAGAGACA
* * *
34492 AACTTTGATTCTATCAAAAA-TGGTG-GAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
1 AACTTAGATTCTA-CAAAAATTGGTGTGAAAA-AAAAGCCTTTCTTACGAAACCAAAGCATCAAT
* * * ** *
34555 GTCATGTATCCTAATGAAGGAA-A-TGTGTTTTTGCT-TCCCAATCCTAAAAAGAATGGAGACTA
64 ATCATGTATCCTAAT-AA-GAAGACTATGTATACGCTGT-CCAATCCTAAAAAGAACGGAGACTA
*
34617 TTACGAG-AATCGATGCTTGCCATATTTAA
126 GTACGAGTAATC-ATGCTTGCCATATTTAA
34646 AAGTTGAACT
Statistics
Matches: 126, Mismatches: 22, Indels: 12
0.79 0.14 0.08
Matches are distributed among these distances:
159 9 0.07
160 105 0.83
161 9 0.07
162 3 0.02
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (160 bp):
AACTTAGATTCTACAAAAATTGGTGTGAAAAAAAAGCCTTTCTTACGAAACCAAAGCATCAATAT
CATGTATCCTAATAAGAAGACTATGTATACGCTGTCCAATCCTAAAAAGAACGGAGACTAGTACG
AGTAATCATGCTTGCCATATTTAAGAGACA
Found at i:35345 original size:443 final size:446
Alignment explanation
Indices: 34515--36351 Score: 1766
Period size: 478 Copynumber: 4.0 Consensus size: 446
34505 TCAAAAATGG
34515 TGGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATG
1 TGGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATG
* * * * *
34580 TGTTTTTGCTTCCCAATCCTAAAAAGAATGGAGACTATTACGAGAATCGATGCTTGCCATATTTA
66 TGTTTTTGCTT-CCAATCATGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTA
* * * *
34645 AAAGTTGAACTTTGATTTTAAGGAAAATAAGGCT-AAGAAAAGATTTTCATTGTAAAAGAAAATC
130 AAGGATGAACTTTGATTTTAAGGAAAATAA-GATAAAGAAAAGATTTTCA-TGCAAAAGAAAATC
* * *
34709 ATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCAAATCACTAAATGAATAAAGA
193 ATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGA
* * * * * *
34774 TCATTACTAGATTCCATGTTTGTCTCATTTGAGGCGCAAATTTAGACTTTATAAAAATTGGGGGG
258 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
* * * * *
34839 AAGAAAGCCTTTCTTGTGAAACTAAAGCATCAAATCG-TGTATCCTAATAAGAAGACTATGTTTA
323 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCATAT-GATGTATCCTAATGAGAAGACTATGTTTA
** * * *
34903 TGGCACCTAATCTCGAAAAAAACGGTGATTATTATCAGTATTCTTGTGTGTC-A-T-AA-
387 TGGTGCCTAATCTCGAAAAAAACGGGGATTAGTATCAGTATTCATGTGTGTCAATTAAAC
* * *
34959 TGG-AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAGTGTCATGCATCCTAATGAAGAAAATG
1 TGGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATG
*
35023 TGTTTTTGCTTCTCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTA
66 TGTTTTTGCTTC-CAATCATGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTA
* *
35088 AAGGATCAACTTTGATTTTAAGAAAAATAAGATAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
130 AAGGATGAACTTTGATTTTAAGGAAAATAAGATAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
* ** *
35153 CAATATCATTTATCCTAACGAGCAGAATGTGTTTATAGCACCTAATCACAAAATGAACAAAGATC
195 CAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATC
* *
35218 TTTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
260 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * *
35283 AAAAGCCTTTCTTGCAAAACCGAAGCATCATTATGATCTATTCAAATGAGAAGACTATGTTTATG
325 AAAAGCCTTTCTTGCGAAACCAAAGCATCA-TATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
35348 GTGTCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAA
389 GTGCCTAATCTCGAAAAAAACGGGGATTAGTATCAGTATTCATGTGTGTCA-A-TT-------AA
35413 AC
445 AC
* * * *
35415 TTGGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCATTT
1 -TGG---------AAAA----G----AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGT
* * * ** *
35480 ACCCTAATGAAGGGAATGTGTTTTGGCAACCAAATCATGAAAAAAAAAATGGAGACTGTTATGAG
48 ATCCTAATGAAGGAAATGTGTTTTTGCTTCC-AATCATG---AAAAGAATGGAGACTGTTATGAG
* **
35545 AATCG-TGGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGA
109 AATCGAT-GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGATAAAGAAAAGA
** *
35609 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCT
173 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCT
* * * *
35674 AATGACCAAAA-GAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTA
238 AATCA-CAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * *
35738 GACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATC
302 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATC-ATATGATGTATC
* * * * * *
35803 CTAATGAGGAGACTACG-TTATGGTGCCTAATC-CTGAAAAGAATGGGGATTAGTTTGAGTATTC
366 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTC-GAAAAAAACGGGGATTAGTATCAGTATTC
*
35866 ATGTTTGACGTATTTAAGAGACAAATTTTGATTTTATTGAAAAC
430 ATG--T---G----T----G--------TCA----ATT--AAAC
* * **
35910 GGTGG-AAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATTTCATGTATCCTAAAAAAGTG-A
1 --TGGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GAA
* * * * * * * * * ** *
35973 ATGTGTGTTCGGTTCCCAATC-TTAAAAGGAATGGGGGCTATTATGAGAATCGAAGCTCGGTTTG
63 ATGTGTTTTTGCTT-CCAATCATGAAAA-GAATGGAGACTGTTATGAGAATCGATGCTTGCCTTA
* * *
36037 TTTAAAGGATAAACTTTGATTTTAAGGAAAATAACG-TAAAGAAAAGATTTCCATGCAAAATAAA
126 TTTAAAGGATGAACTTTGATTTTAAGGAAAATAA-GATAAAGAAAAGATTTTCATGCAAAAGAAA
* * * * *
36101 ATCATCAATATGATTTATCTTGAA-GAGGAGAAT-TGTTTATAGTACCTATTCACAAAATGAAAA
190 ATCATCAATATCATTTATCCT-AACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATA
* * * * **
36164 AAGATCTTTACTAGAATCCATATGTATCTCATTAAAGGCACGAACTTAGACTTTACAAAAATTGG
254 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-G
** * *
36229 AGTGAAAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTA
318 -GTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATC-ATATGATGTATCCTAATGAGAAGACTA
* * * * *
36294 TGTTTATGCTGCCTAATC-CTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
381 TGTTTATGGTGCCTAATCTCGAAAAA-AACGGGGATTAGTATCAGTATTCATGTGTGTC
36352 GTATTTAAGA
Statistics
Matches: 1152, Mismatches: 161, Indels: 148
0.79 0.11 0.10
Matches are distributed among these distances:
442 159 0.14
443 224 0.19
444 3 0.00
445 1 0.00
447 1 0.00
455 2 0.00
456 1 0.00
457 3 0.00
464 1 0.00
467 3 0.00
468 1 0.00
471 1 0.00
473 5 0.00
474 78 0.07
475 176 0.15
476 63 0.05
477 86 0.07
478 315 0.27
479 10 0.01
482 1 0.00
486 4 0.00
490 1 0.00
495 4 0.00
496 3 0.00
498 2 0.00
500 2 0.00
501 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (446 bp):
TGGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATG
TGTTTTTGCTTCCAATCATGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTAA
AGGATGAACTTTGATTTTAAGGAAAATAAGATAAAGAAAAGATTTTCATGCAAAAGAAAATCATC
AATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCA
TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
AAAGCCTTTCTTGCGAAACCAAAGCATCATATGATGTATCCTAATGAGAAGACTATGTTTATGGT
GCCTAATCTCGAAAAAAACGGGGATTAGTATCAGTATTCATGTGTGTCAATTAAAC
Found at i:35834 original size:920 final size:917
Alignment explanation
Indices: 33678--36563 Score: 3543
Period size: 920 Copynumber: 3.1 Consensus size: 917
33668 CCTAAACGTG
* *
33678 GCTTGCCTTATTT-AAAGAATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GCTTGCCATATTTAAAAG-ATGAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTCAT
33742 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
65 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
*
33807 AAAAGAGTGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
130 AAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
* * *
33872 AAAAATTTGTAGGAAAGAAGCCTTTCCTGCGAAACCAAAGCGTGAATATGATGTATCCTAATGAG
195 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAG
*
33937 AAGACTATGTTTGTGGTGCCTAATCCTGAAAAGAAAGAGGATTAGCATGAGTATTCATGTTTGTC
260 AAGACTATGTTTATGGTGCCTAATCCTGAAAA-AAA-AGG--T-G-AT---TATT-A----T-TC
** * * * * *
34002 GTTTTTAAGAGATAAACTTTGATTTTATCGAAAACGGTGGAATGAAAAGCTTTTCTTGCGACACC
310 -----T---AG-TATTCATTG--TGTATC-ATAA--GTGGAAAGAAAAGCTTTTCTTACGACACC
34067 AAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGATTCCTAATCTTAAAAGGAAT
361 AAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGATTCC-AATCTTAAAAGGAAT
* * * * *
34132 GGTGGCCATTAGGAGAATCGAAGCTTGGTTTGTTTAACGGATGAACTTTGATTTTAAGGAAAATA
425 GGAGGCTATTATGAGAATCGAAGCTTGGTTTGTTTAAAGGATAAACTTTGATTTTAAGGAAAATA
*
34197 ACATAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAAGAGGAGAATT
490 AGATAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAAGAGGAGAATT
* * * *
34262 GTTTATAGTACCTGTTCAAAAAATGAAAAAAATCTTTACTAGAATCCA-TATGTATCTTATTAGA
555 GTTTATAGTACCTATTCACAAAATGAAAAAGATCTTTACTAGAATCCATTATGTCTCTT-TT-GA
* **
34326 GGCACGAACTTAGATTTTACAAAAATTGGTGTGAAAAAAAAGCCTTTCTTGTGAAACCAAAGCAT
618 GGCACGAACTTAGACTTTACAAAAATTGGTG-G-AAAAAAAGCCTTTCTTGCAAAACCAAAGCAT
* *
34391 CAATATGATGTATCCTAATAAGAAGACTATGTATACGCTGTCTAATCCTAAAAAGAACGGGGATT
681 CAATATGATGTATCCTAATAAGAAGACTATGTTTATGCTGTCTAATCCTAAAAAGAACGGGGATT
*
34456 AGTATGAGTACTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
746 AGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* * *
34521 AGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTT
811 A-AAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* *
34586 TGCTTCCCAATCCTAAAAAGAATGGAGACTATTACGAGAATCGAT
875 CGCTTCCCAAT-CTAAAAAGAATGGAGACTATTATGAGAATCG-T
* * *
34631 GCTTGCCATATTTAAAAGTTGAACTTTGATTTTAAGGAAAATAAGGCTAAGAAAAGATTTTCATT
1 GCTTGCCATATTTAAAAGATGAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-T
* ** * * * *
34696 GTAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCAAATCACT
65 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
* * * * * * * * *
34761 AAATGAATAAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGGCGCAAATTTAGACTTTAT
130 AAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
** * * * * * *
34826 AAAAATTGGGGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAA-ATCG-TGTATCCTAATAA
195 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATAT-GATGTATCCTAATGA
** *
34889 GAAGACTATGTTTATGGCACCTAAT-CTCGAAAAAAACGGTGATTATTA-TC-AGTATTC-TTGT
259 GAAGACTATGTTTATGGTGCCTAATCCT-GAAAAAAAAGGTGATTATTATTCTAGTATTCATTGT
* * * * **
34950 GTGTCATAA-TGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAGTGTCATGCATCCTAATG
323 GTATCATAAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATTTCATGTATCCTAAAA
** * * * * * *
35014 AAGAAAATGTGTTTTTGCTTCTCAATCTTGAAAA-GAATGGAGACTGTTATGAGAATCGATGCTT
388 AAGTGAATGTGTGTTCGATTC-CAATCTT-AAAAGGAATGGAGGCTATTATGAGAATCGAAGCTT
** * * * *
35078 GCCTTATTTAAAGGATCAACTTTGATTTTAAGAAAAATAAGATAAAGAAAAGATTTTCATGCAAA
451 GGTTTGTTTAAAGGATAAACTTTGATTTTAAGGAAAATAAGATAAAGAAAAGATTTCCATGCAAA
* * * *
35143 AGAAAATCATCAATATCATTTATCCT-AACGAGCAGAATGTGTTTATAGCACCTAATCACAAAAT
516 ATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTATAGTACCTATTCACAAAAT
*
35207 GAACAAAGATCTTTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAA
579 GAA-AAAGATCTTTACTAGAATCCAT-TATGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAA
* * * * * * *
35272 ATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCGAAGCATCATTATGATCTATTCAAATGAGAAGA
642 ATTGGTGGAAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGA
* * * *
35337 CTATGTTTATGGTGTCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCATAT
707 CTATGTTTATGCTGTCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTAT
* * * *
35402 TTAAGAGACAAACTTGGATTCTATCAAAAACGGT-GCAAAAAAAGCTTTTCTTGCAACCCCAAAG
772 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTACAACCCCAAAG
* * * ** * *
35466 CATCAATGTCATTTACCCTAATGAAGGGAATGTGTTTTGGCAACCAAATCATGAAAAAAAAAATG
837 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATC-T---AAAAAGAATG
*
35531 GAGACTGTTATGAGAATCGT
898 GAGACTATTATGAGAATCGT
* *
35551 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTCAT
1 -GCTTGCCATATTTAAAAGATGAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTCAT
35616 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
65 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
35681 AAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
130 AAAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
35746 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAG
195 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAG
* * * * *
35811 GAGACTACG-TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGAC
260 AAGACTATGTTTATGGTGCCTAATCCTGAAAA-AA-----A--AG-GTGATTATT-AT-TCT-A-
* * * *
35875 GTATTTAAGAGACAAATTTTGATTTTATTGAAAACGGTGGAAAGAAAAGCTTTTCTTATGACACC
312 GTA-TT------C--A--TTG--TGTA-TCATAA--GTGGAAAGAAAAGCTTTTCTTACGACACC
*
35940 AAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGGTTCCCAATCTTAAAAGGAAT
361 AAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGATT-CCAATCTTAAAAGGAAT
* *
36005 GGGGGCTATTATGAGAATCGAAGCTCGGTTTGTTTAAAGGATAAACTTTGATTTTAAGGAAAATA
425 GGAGGCTATTATGAGAATCGAAGCTTGGTTTGTTTAAAGGATAAACTTTGATTTTAAGGAAAATA
* *
36070 ACG-TAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATGATTTATCTTGAAGAGGAGAAT
490 A-GATAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAAGAGGAGAAT
* *
36134 TGTTTATAGTACCTATTCACAAAATGAAAAAAGATCTTTACTAGAATCCA-TATGTATCTCATTA
554 TGTTTATAGTACCTATTCACAAAATG-AAAAAGATCTTTACTAGAATCCATTATG--TCTCTTTT
* *
36198 AAGGCACGAACTTAGACTTTACAAAAATTGGAGTGAAAAAAAAGCCTTTCTTGCAAAACCAAAGC
616 GAGGCACGAACTTAGACTTTACAAAAATT-G-GTGGAAAAAAAGCCTTTCTTGCAAAACCAAAGC
* *
36263 ATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGCTGCCTAATCCTAAAAAGAATGGGGA
679 ATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGCTGTCTAATCCTAAAAAGAACGGGGA
* *
36328 TTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTACCAAAAATGGTGGG
744 TTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGA
* * * * *
36393 AAGAAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATGTATCTTAATGAAGCGAGTGCGTTT
809 AAAAAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* *
36458 TCGCTTCCCAATCTTAAAAAGGATGGAGACTATTATGAGAATCAAT
874 TCGCTTCCCAATC-TAAAAAGAATGGAGACTATTATGAGAATC-GT
* *
36504 GCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
1 GCTTGCCATATTTAAAAGATGAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTT
36564 CTGTCGTAAC
Statistics
Matches: 1648, Mismatches: 222, Indels: 127
0.83 0.11 0.06
Matches are distributed among these distances:
917 1 0.00
918 65 0.04
919 6 0.00
920 495 0.30
921 140 0.08
922 52 0.03
923 5 0.00
924 12 0.01
926 4 0.00
927 3 0.00
928 3 0.00
929 7 0.00
930 1 0.00
932 1 0.00
934 1 0.00
935 3 0.00
936 2 0.00
937 2 0.00
942 1 0.00
943 1 0.00
944 4 0.00
947 5 0.00
948 1 0.00
949 3 0.00
950 7 0.00
951 2 0.00
952 169 0.10
953 282 0.17
954 302 0.18
955 68 0.04
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (917 bp):
GCTTGCCATATTTAAAAGATGAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTCATG
CAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACCA
AAAGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACA
AAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGA
AGACTATGTTTATGGTGCCTAATCCTGAAAAAAAAGGTGATTATTATTCTAGTATTCATTGTGTA
TCATAAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATTTCATGTATCCTAAAAAAG
TGAATGTGTGTTCGATTCCAATCTTAAAAGGAATGGAGGCTATTATGAGAATCGAAGCTTGGTTT
GTTTAAAGGATAAACTTTGATTTTAAGGAAAATAAGATAAAGAAAAGATTTCCATGCAAAATAAA
ATCATCAATATCATTTATCCTGAAGAGGAGAATTGTTTATAGTACCTATTCACAAAATGAAAAAG
ATCTTTACTAGAATCCATTATGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGA
AAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTA
TGCTGTCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
AAACTTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTACAACCCCAAAGCATCAATGT
CATGTATCCTAATGAAGGGAATGTGTTTTCGCTTCCCAATCTAAAAAGAATGGAGACTATTATGA
GAATCGT
Found at i:36435 original size:477 final size:476
Alignment explanation
Indices: 34959--36564 Score: 2087
Period size: 478 Copynumber: 3.4 Consensus size: 476
34949 TGTGTCATAA
* * * *
34959 TGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAGTGTCATGCATCCTAATGAAGAAAATGT
1 TGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT
* * * * *
35024 GTTTTTGCTTCTCAATCTTGAAAA-GAATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTA
66 GTTTTCGCTTCCCAATCTTAAAAAGGAATGGAGACTATTATGAGAATCGAAGCTTGCCTTATTTA
* * ** *
35088 AAGGATCAACTTTGATTTTAAGAAAAATAAGATAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
131 AAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
35153 CAATATCATTTATCCTAACGAGCAGAATGTGTTTATAGCACCTAATCACAAAATGAACAAAGATC
196 CAATATCATTTATCCTAA-GAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATC
* * *
35218 TTTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
260 TTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGTGAA
* * * * *
35283 AAAAGCCTTTCTTGCAAAACCGAAGCATCATTATGATCTATTCAAATGAGAAGACTATGTTTATG
325 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * *
35348 GTGTCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAA
390 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAA
*
35413 ACTTGGATTCTATCAAAAACGG
455 ACTTTGATTCTATCAAAAACGG
* * * * * *
35435 TGCAAA-AAAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCATTTACCCTAATGAAGGGAATGT
1 TGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT
* ** * * ** * **
35499 GTTTTGGCAACCAAATCATGAAAAAAAAAATGGAGACTGTTATGAGAATCGTGGCTTGCCTTATT
66 GTTTTCGCTTCCCAATC-T-TAAAAAGGAATGGAGACTATTATGAGAATCGAAGCTTGCCTTATT
* *
35564 TAAAGGATGAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATC
129 TAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* ** * ** *
35629 ATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACCAAAA-GAATGAAT
194 ATCAATATCATTTATCCTA-AGAGGAGAATGTGTTTATAGTACCTAATCA-CAAAATGAAAAAAG
* *
35693 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAAAATTGGTAG
257 ATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-AG
* * * * *
35758 -GAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAGACTACG-T
321 TGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTT
* *
35821 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGACGTATTTAAGAG
386 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAG
* * **
35886 ACAAATTTTGATTTTATTGAAAACGG
451 ACAAACTTTGATTCTATCAAAAACGG
** * ** *
35912 TGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGT
1 TGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT
* * * * * ** *
35977 GTGTTCGGTTCCCAATCTT-AAAAGGAATGGGGGCTATTATGAGAATCGAAGCTCGGTTTGTTTA
66 GTTTTCGCTTCCCAATCTTAAAAAGGAATGGAGACTATTATGAGAATCGAAGCTTGCCTTATTTA
* * * *
36041 AAGGATAAACTTTGATTTTAAGGAAAATAACGTAAAGAAAAGATTTCCATGCAAAATAAAATCAT
131 AAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
36106 CAATATGATTTATCTTGAAGAGGAGAAT-TGTTTATAGTACCTATTCACAAAATGAAAAAAGATC
196 CAATATCATTTATCCT-AAGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATC
* * * **
36170 TTTACTAGAATCCATATGTATCTCATTAAAGGCACGAACTTAGACTTTACAAAAATTGGAGTGAA
260 TTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGTG--
*
36235 AAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTA
323 AAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTA
* *
36300 TGCTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
388 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
* *
36365 AAACTTTGATTCTACCAAAAATGG
453 AAACTTTGATTCTATCAAAAACGG
* * * * * *
36389 TGGGAAGAAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATGTATCTTAATGAAGCGAGTGC
1 TGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT
*
36454 GTTTTCGCTTCCCAATCTTAAAAAGG-ATGGAGACTATTATGAGAATC-AATGCTTGCCATATTT
66 GTTTTCGCTTCCCAATCTTAAAAAGGAATGGAGACTATTATGAGAATCGAA-GCTTGCCTTATTT
* *
36517 AAAAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
130 AAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
36565 TGTCGTAACA
Statistics
Matches: 963, Mismatches: 152, Indels: 29
0.84 0.13 0.03
Matches are distributed among these distances:
473 7 0.01
474 76 0.08
475 177 0.18
476 64 0.07
477 314 0.33
478 319 0.33
479 6 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (476 bp):
TGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT
GTTTTCGCTTCCCAATCTTAAAAAGGAATGGAGACTATTATGAGAATCGAAGCTTGCCTTATTTA
AAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
CAATATCATTTATCCTAAGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAAAAGATCT
TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGTGAAA
AAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
CTTTGATTCTATCAAAAACGG
Found at i:39705 original size:13 final size:13
Alignment explanation
Indices: 39687--39711 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39677 CAAAGATCAG
39687 TGTATCGATACAA
1 TGTATCGATACAA
39700 TGTATCGATACA
1 TGTATCGATACA
39712 CTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:39789 original size:33 final size:33
Alignment explanation
Indices: 39752--39818 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
39742 AGTAGCTTAA
39752 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
39785 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
39818 A
1 A
39819 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:39792 original size:13 final size:13
Alignment explanation
Indices: 39774--39798 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39764 CAAAAAAATA
39774 TGTATCGATACAT
1 TGTATCGATACAT
39787 TGTATCGATACA
1 TGTATCGATACA
39799 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41508 original size:160 final size:157
Alignment explanation
Indices: 40388--42068 Score: 477
Period size: 159 Copynumber: 10.6 Consensus size: 157
40378 TTGTTTGTCG
* * * *
40388 TATTTAAGAGACAAACTTTGATTCTCTCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCA
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTACGAAACCA
* * * * * * * *
40453 AAGCATCAATGTCTTGCATCGTAATGAAAGGAATATGTTTTTTCTTCTCAATCTTGAAAAA-AAT
66 AAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTT-AAAAAGAAT
* * **
40517 GGAGACTGTTTTGAGAATCGATGCTTGCC
130 AGAGACTATTACGAGAATCGATG-TTGCC
** * ** * * * * * *
40546 TTATTTAA-AGGATGAACTTTGATTTTAAGAAAAAT-AGGGTAAAGAAAAGATTTCCATGCAAAA
1 -TATTTAAGA-GACAAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTCTTACGAAA
** * * * * * * * * * *
40609 TAAAATCATCAATATCGTTTATCCTAATG-AGCAGATTGTGTTTGTAG-TACCTAATCATAAAAT
63 CCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTT-TTGCTTCCCAATCTTAAAAA
* * * * *
40672 GAACAAAGATCT-TTACTAGAATCCATGTTTGTC
126 GAATAGAGA-CTATTACGAGAATCGATG-TTGCC
* * * * * *
40705 TCATTTGAG-GCACAAACTTAGACTT-TA-CAAAAATTTG-TGGGAA-AAAAGCCTTTCTTGCAA
1 T-ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA--TGATGGAAAGAAAAGCTTTTCTTACGA
* * * * *** * * * * *
40765 AACCAAAGCATCATTATGATGTATCCTAATG-AGAAGACTACATTTGTGGTGCCTAATCCTAAAA
61 AACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTTTGCTTCCCAATCTTAAAA
* * * * * * **
40829 AGAACAGGGATTAGTATGAGTATTC-ATGTTTGTTG
125 AGAATAGAGACTATTACGAG-AATCGATG-TTG-CC
* * * * * * * *
40864 TATTTGAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTCTCTTATGACACCA
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTACGAAACCA
* * * * * * * *
40929 AAGCATCAATTTCGTGTATCCTAATAAAGGGAATGTGTGTTCGATTCCCAATCTTAAAAGGAATG
66 AAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAATA
* * * **
40994 GGGGCTATTACGAGAATCGAAGCTTGGTT
131 GAGACTATTACGAGAATCGATG-TT-GCC
* ** * *** * * * * * * * * **
41023 TGTTTAA-AGGATGAACTTTGATTTTAAGGAAAATAACGTAAAGAAAAGATTTCCATGCAAAATA
1 TATTTAAGA-GACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTACGAAACC
* * * * * * *
41087 AAATCATCAATATCATTTATCCTGAA-G-AGGAGAAT-TGTTTATAG-TACCTATTC-AAAAAAT
65 AAAGCATCAATATCATGTATCCT-AATGAAGG-GAATGTGTTT-TTGCTTCCCAATCTTAAAAA-
* * * * * **
41147 GAAAAAAGA-TATTTACTAGAATCTATATGTATC
126 GAATAGAGACTA-TTACGAGAATCGATGT-TGCC
* * * * * *
41180 TCA-TT-AGAGGCACGAACTTAGACTT-TA-CAAAAATTGGTGTGAAAAAAAAAGCCTTTCTTGC
1 T-ATTTAAGA-G-ACAAACTTTGA-TTCTATCAAAAA-TGATG-G-AAAGAAAAGCTTTTCTTAC
* * * * ** * *
41241 GAAACCAAAGCATCAATATGATGTATCCTAAT-AAGAAGACTATGTTTACGCTGT-CTAATCCTA
59 GAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTTTGCT-TCCCAATCTTA
* * * * * * *
41304 AAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCG
122 AAAAGAATAGAGACTATTACGAG-AATCGATG-TTG-CC
* *
41342 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGACACC
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTCTTACGAAACC
*
41407 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAAT
65 AAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAAT
*
41472 AGAGACTATTACGAGAATCGGTGATTGCC
130 AGAGACTATTACGAGAATCGATG-TTGCC
* ** * *** * * * * * ***
41501 ATATTTAAAAGATGAACTTTGATTTTAAGGAGAAT-AAGGCTAAGAAAAGATTTCCATTGTAAAA
1 -TATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTC-TTACGAAA
** * * * *
41565 GAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAG--TCCCAAATCACT-AA
63 CCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGTGTTT-TTGCTTCCC-AATC-TTAAA
* * * * *
41626 ATGAATAAAGA-TCATTACTAGAATCCATGTTTGTC
124 AAGAATAGAGACT-ATTACGAGAATCGATG-TTGCC
* * * ** * * * *
41661 TCATTTGAG-GTGCGAA-TTTAGACTT-TAT-AAAAATTGGGGGGAAG-AAAGCCTTTCTTGCCA
1 T-ATTTAAGAG-ACAAACTTT-GA-TTCTATCAAAAA-TGATGGAAAGAAAAGCTTTTCTTACGA
* * * * * * * * * *
41721 AACTAAAGCATCAA-ATCGTGTATCCTAAT-AAGAAGACTATGTTTATGGTACCTAATCCTGAAA
61 AACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTTTGCTTCCCAAT-CTTAAA
* * * * * *
41784 AA-AA-GGGGATTATTATC-AGTATTC-TTGTGTGTCG
124 AAGAATAGAGACTATTA-CGAG-AATCGATGT-TG-CC
* * *
41818 TATTTAAGAGACAAACTTTGATTCTATCACAAACGATGGAAAGAAAAGCTTTTCTTACGACACCA
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTACGAAACCA
* * * *
41883 AAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCTTGAAAAGAATG
66 AAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAATA
*
41948 GAGACTATTATGAGAATCGATGCTTGCC
131 GAGACTATTACGAGAATCGATG-TTGCC
* ** * * * * *
41976 TTATTTAA-AG-CATTAACTTTGATTTTAAGAAAAAT-AAGGTAAAGAAAAGATTTTCATGCAAA
1 -TATTTAAGAGACA--AACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTCTTACGAA
** * *
42038 ATAAAATCATCAATATCATTTATCCTAATGA
62 ACCAAAGCATCAATATCATGTATCCTAATGA
42069 GCAAAATGTG
Statistics
Matches: 1085, Mismatches: 340, Indels: 194
0.67 0.21 0.12
Matches are distributed among these distances:
155 3 0.00
156 34 0.03
157 98 0.09
158 222 0.20
159 395 0.36
160 259 0.24
161 50 0.05
162 21 0.02
163 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (157 bp):
TATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTACGAAACCA
AAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAATA
GAGACTATTACGAGAATCGATGTTGCC
Found at i:41937 original size:475 final size:474
Alignment explanation
Indices: 40122--42348 Score: 2975
Period size: 475 Copynumber: 4.7 Consensus size: 474
40112 AGTGTCTACA
* **
40122 ATTTCCAT--AAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCC
1 ATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACC
* * *
40185 AAATCACAAAATGAATAGAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
66 TAATCACAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * *
40250 GACTTTATAAAATTTGGGGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC-AATGTCGTGTAT
131 GACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAAATG--ATGTAT
* * * * * * *
40314 CCTAATAGGAAGAGTACGTTTATGGTACCTAATCCTGAAAAAAAAGGGATTATTATCAGTATTCT
194 CCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAAAGGGATTAGTATGAGTATTCA
*
40379 TGTTTGTCGTATTTAAGAGACAAACTTTGATTCTCTCAAAAACGGTGGAAAGAAAAGCTTTTCTT
259 TGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * * * * *
40444 ACGACACCAAAGCATCAATGTCTTGCATCGTAATGAAAGGAATATGTTTTTTCTTCTCAATCTTG
324 ACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTT-
* ** *
40509 AAAAA-AATGGAGACTGTTTTGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTA
388 AAAAAGAATGGAGACTATTACGAGAATCGATGCTTGCCTTATTTAAAAGATGAACTTTGATTTTA
*
40573 AGAAAAATAGGGTAAAGAAAAG
453 AGAAAAATAAGGTAAAGAAAAG
* * * *
40595 ATTTCCATGCAAAATAAAATCATCAATATCGTTTATCCTAATGAGCAGATTGTGTTTGTAGTACC
1 ATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACC
* *
40660 TAATCATAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTA
66 TAATCACAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * *
40725 GACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATGTATC
131 GACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCA-AATGATGTATC
* ** *
40790 CTAATGAGAAGACTACATTTGTGGTGCCTAATCCT-AAAAAGAACAGGGATTAGTATGAGTATTC
195 CTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-AA-AGGGATTAGTATGAGTATTC
* * * * *
40854 ATGTTTGTTGTATTTGAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTCTCT
258 ATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * * * *
40919 TATGACACCAAAGCATCAATTTCGTGTATCCTAATAAAGGGAATGTGTGTTCGATTCCCAATCTT
323 TACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTT
* * * * ** * *
40984 AAAAGGAATGGGGGCTATTACGAGAATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTA
388 AAAAAGAATGGAGACTATTACGAGAATCGATGCTTGCCTTATTTAAAAGATGAACTTTGATTTTA
* *
41049 AGGAAAATAACGTAAAGAAAAG
453 AGAAAAATAAGGTAAAGAAAAG
41071 ATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTATAGTAC
1 ATTTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTAC
* * * * * * * * *
41134 CTATTCAAAAAATGAAAAAAGATATTTACTAGAATCTATATGTATCTCATTAGAGGCACGAACTT
65 CTAATCACAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
** *
41199 AGACTTTACAAAAATTGGTGTGAAAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
130 AGACTTTACAAAAATTGG-G-G-GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAA-ATGATG
* * * *
41264 TATCCTAATAAGAAGACTATGTTTACGCTGTCTAATCCT-AAAAAGAATGGGGATTAGTATGAGT
191 TATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-AA-AGGGATTAGTATGAGT
*
41328 ATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCT
254 ATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCT
*
41393 TTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCA
318 TTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCCCA
* * * *
41458 ATCTTAAAAAGAATAGAGACTATTACGAGAATCGGTGATTGCCATATTTAAAAGATGAACTTTGA
383 ATCTTAAAAAGAATGGAGACTATTACGAGAATCGATGCTTGCCTTATTTAAAAGATGAACTTTGA
* *
41523 TTTTAAGGAGAATAAGGCT-AAGAAAAG
448 TTTTAAGAAAAATAAGG-TAAAGAAAAG
* * *
41550 ATTTCCATTGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTCC
1 ATTTCCA-TGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTAC
* * * * ** *
41615 CAAATCACTAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAATTT
65 CTAATCACAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * *
41680 AGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTCTTGCCAAACTAAAGCATCAAATCG-TGTAT
130 AGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAAAT-GATGTAT
* * * * *
41744 CCTAATAAGAAGACTATGTTTATGGTACCTAATCCTGAAAAAAAGGGGATTATTATCAGTATTCT
194 CCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAAAGGGATTAGTATGAGTATTCA
* * *
41809 TGTGTGTCGTATTTAAGAGACAAACTTTGATTCTATCACAAACGATGGAAAGAAAAGCTTTTCTT
259 TGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * *
41874 ACGACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCTTG
324 ACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTA
* *
41939 AAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTT-AAAGCATTAACTTTGATTTTA
389 AAAAGAATGGAGACTATTACGAGAATCGATGCTTGCCTTATTTAAAAG-ATGAACTTTGATTTTA
42003 AGAAAAATAAGGTAAAGAAAAG
453 AGAAAAATAAGGTAAAGAAAAG
* * *
42025 ATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAAAATGTGTTTATAGTACC
1 ATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACC
* *
42090 TAATCACAAAATGAACGAAGATCTTTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTA
66 TAATCACAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * *
42155 GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATT
131 GACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCA-AATGATGTATC
* * * * *
42220 CAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCA
195 CTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-AAAAGGGATTAGTATGAGTATTCA
* * *
42285 TGTTTGTCATATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGCAAA-AAAAGCTTTTCTT
259 TGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
42349 GCAACCCCAA
Statistics
Matches: 1526, Mismatches: 204, Indels: 46
0.86 0.11 0.03
Matches are distributed among these distances:
473 8 0.01
474 167 0.11
475 487 0.32
476 368 0.24
477 47 0.03
478 176 0.12
479 154 0.10
480 41 0.03
481 78 0.05
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (474 bp):
ATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACC
TAATCACAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
GACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAAATGATGTATCC
TAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAAAGGGATTAGTATGAGTATTCATG
TTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTAC
GACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAA
AAGAATGGAGACTATTACGAGAATCGATGCTTGCCTTATTTAAAAGATGAACTTTGATTTTAAGA
AAAATAAGGTAAAGAAAAG
Found at i:42699 original size:395 final size:396
Alignment explanation
Indices: 41969--42744 Score: 1128
Period size: 395 Copynumber: 2.0 Consensus size: 396
41959 GAGAATCGAT
* * *
41969 GCTTGCCTTATTTAAAGCATTAACTTTGATTTTAAGAAAAATAAGGTAAAGAAAAGATTTTCATG
1 GCTTGCCTTATTTAAAGCATGAACTTTGATTGTAAGAAAAATAAGGCAAAGAAAAGATTTTCATG
*
42034 CAAAATAAAATCATCAATATCATTTATCCTAATGAGCAAAATGTGTTTATAGTACCTAATCACAA
66 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAAAATGTGTTTATAGTACCTAATCACAA
*
42099 AATGAACGAAGATCTTTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACA
131 AATGAACGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACA
* * * *
42164 AAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATTCAAATGAGA
196 AAAATTGGTAGGAAAAATGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGAGA
* * * * *
42229 AGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTCA
261 AGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGCACGAGTATTCATGTTTGTCA
42294 TATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGCAAA-AAAAGCTTTTCTTGCAACCCCA
326 TATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGCAAAGAAAAGCTTTTCTTGCAACCCCA
42358 AACGTG
391 AACGTG
* * *
42364 GCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
1 GCTTGCCTTATTTAAAGCATGAACTTTGATTGTAAGAAAAATAAGGCAAAGAAAAGATTTTCATG
* * * ** *
42429 CAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACCA
66 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAAAATGTGTTTATAGTACCTAATCA-CA
* * * *
42494 AAA-GAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
130 AAATGAACGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTAC
* * * *
42558 AAAAATTGGTAGGAAAGAA-GCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGA
195 AAAAATTGGTAGGAAA-AATGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGA
* * *
42622 GAAGACTGCGTTTGTGGTGCCTAATCCTGAAAAGAA-TGAGGATTAGCACGAGTATTCATGTTTG
259 GAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAG-GGATTAGCACGAGTATTCATGTTTG
* * * * * * *
42686 TCATTTTTAAGAGATAAACTTTGATTTTATCGAAAATGGTGGAAAGAAAAGCTTTTCTT
323 TCATATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGCAAAGAAAAGCTTTTCTT
42745 ACGACACCAA
Statistics
Matches: 336, Mismatches: 41, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
394 1 0.00
395 315 0.94
396 20 0.06
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (396 bp):
GCTTGCCTTATTTAAAGCATGAACTTTGATTGTAAGAAAAATAAGGCAAAGAAAAGATTTTCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAAAATGTGTTTATAGTACCTAATCACAA
AATGAACGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACA
AAAATTGGTAGGAAAAATGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGAGA
AGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGCACGAGTATTCATGTTTGTCA
TATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGCAAAGAAAAGCTTTTCTTGCAACCCCA
AACGTG
Found at i:44287 original size:476 final size:475
Alignment explanation
Indices: 42364--45449 Score: 4015
Period size: 476 Copynumber: 6.5 Consensus size: 475
42354 CCCAAACGTG
* * *
42364 GCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG
* * ** * *
42429 CAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACCA
66 CAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCA-TA
* * * *
42494 AAA-GAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
130 AAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * *
42558 AAAAATTGGTAGGAAAGAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAG
195 AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAG
** * * * * * *
42623 AAGACTGCGTTTGTGGTGCCTAATCCTGAAAAGAATGAGGATTAGCACGAGTATTCATGTTTGTC
260 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * * *
42688 ATTTTTAAGAGATAAACTTTGATTTTATCGAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACC
325 GTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACC
* ** * * * * *
42753 AAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGATTCCTAATCTTAAAAGGAAT
390 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAA-GAAT
* * * *
42818 GGTGGCCATTATGAGAATCGAA
454 GGAGACTATTATGAGAATCGAT
** * ***
42840 GCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACATAAAGAAAAGATTTCCATG
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG
* * * *
42905 CAAAATAAAATCTTCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTACAGTACCTATTCAAA
66 CAAAATAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCTAATCATA
* * * * * *
42968 AAATGAAAAAATATCTTTACTAGAATCCATATGTATCTCATTAGAGGCACGAACTTAGACTTTAC
130 AAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
*
43033 AAAAATTGGTGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATA
195 AAAAATTGGTG-G-GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATA
* * * *
43098 AGAAGACTATGTATACGCTGTCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTG
258 AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTG
*
43163 TCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGAC
323 TCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTACGAC
*
43228 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCCTAAAAAG
387 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAAT-CTTAAAAG
*
43293 AACGGAGACTATTATGAGAATCGAT
451 AATGGAGACTATTATGAGAATCGAT
* * * * *
43318 GCTTGCCATATTTAAATGTTGAACTTTGATTTTAAGGAAAATAAGGCT-AAGAAAAAATTTCCAT
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAAT-AGGGTAAAGAAAAGATTTCCA-
* * * *
43382 TGTAAAAGAAAATCATCAATATCATTT-TCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCAC
64 TGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCA-
* * *
43446 T-AAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGCGAATTTAGACTTT
128 TAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * *
43510 ATAAAAATTGGGGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAA-ATCG-GGTATCCTAAT
193 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAAT
** * * * * *
43573 AAGAAGACTATGTTTATGGCACCTAATCTCGAAAAA-AACGGGGATTATTATCAGTATTCTTGTG
257 AAGAAGACTATGTTTATGGTGCCTAATC-CTAAAAAGAACGGGGATTAGTATGAGTATTCATGTT
* * *
43637 TGTCATATTTAAGAGACAAACTTTGATTCTCTCAAAAACGGTGGAAAGAAAAGGTTTTCTTACGA
321 TGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGA
* * *
43702 CACCAAAGCATCAGTGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCTTGAAAA
386 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTT-AAAA
* *
43767 AAATGGAGACTGTTATGAGAATCGAT
450 GAATGGAGACTATTATGAGAATCGAT
*
43793 GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTCCATG
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG
* * * *
43858 CAAAATAAAATCATCAATATCGTTTATCCTAATGAGTAGATTGTGTTTGTAGTACCTAATCATAA
66 CAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCATAA
* *
43923 AATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACA
131 AATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * *
43988 AAAATTGGTGGGAAAAAAGCCTTTCTCGCAAAACCAAAGCATCATTATGATGTATCCTAATGAGA
196 AAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGA
** * * *
44053 AGACTACATTTGTGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTTG
261 AGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCG
* * * * * *
44118 TATTTGAGAGACAAACTTTGATTTTATCGAAAACAGTGGAAAGAAAAGCTTCTCTTATGACACCA
326 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCA
* * * * * *
44183 AAGCATCAATTTCGTGTATCCTAATAAAGGGAATGTGTGTTCGATTCCCAATCTTAAAAGGAATG
391 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAA-GAATG
* * * *
44248 GGGGCTATTACGAGAATCGAA
455 GAGACTATTATGAGAATCGAT
** * **
44269 GCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACGTAAAGAAAAGATTTCCATG
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG
* * *
44334 CAAAATAAAATCATCAATATCATTTATCCCGAA-GAGGAGAAT-TGTTTATAGTACCTATTCAAA
66 CAAAATAAAATCATCAATATCATTTAT-CCTAATGAGGAGAATGTGTTTATAGTACCTAATCATA
* * * * * * *
44397 AAATGAAAAAAGATATTTACTAGAATCTATATGTATCTCATTAGAGGCACGAACTTAGACTTTAC
130 AAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
*
44462 AAAAATTGGTGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATA
195 AAAAATTGGTG-G-GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATA
* * * * * *
44527 AGAAGACTATGTTTACGCTGTCTAATCCTAAAAAGAATGGGAATTAGTATGAGTATTCTTGTTTG
258 AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTG
* *
44592 TCGTATTTAAGAGACAAAATTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGAC
323 TCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTACGAC
44657 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAG
387 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTT-AAAAG
* * *
44722 AATAGAGGCTATTACGAGAATCGAT
451 AATGGAGACTATTATGAGAATCGAT
* * * * * *
44747 GATTGCCATATTTAAAAGATGAACTTTGATTTGAAGGAGAATAAGGCT-AAGAAAAGATTTCCAT
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAAT-AGGGTAAAGAAAAGATTTCCA-
* * * *
44811 TGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCAC
64 TGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCA-
* * *
44876 T-AAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAGGAATTTAGACTTT
128 TAAAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * *
44940 ATAAAAATTGGGGGGAAGAAAGCCTTTCTTGCAAAACTAAAGCATCAA-ATCG-TGTATCCTAAT
193 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAAT
* * * * * *
45003 AAGAAGACTATGTTTATGGTACCTAATCCTAAAAAAAACGGGGATTATTATCAGTATTCTTGTGT
257 AAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTT
* * * *
45068 GTCGTATTTAAGTGACAAACTTTGATTCTGTCACAAACGATGGAAAGAAAAGCTTTTCTTACGAC
322 GTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC
* * *
45133 ACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCTTGAAAAG
387 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTT-AAAAG
*
45198 AATGGAGACTATTATGAGAATGGAT
451 AATGGAGACTATTATGAGAATCGAT
* * * * * * *
45223 GCTTGCTTTATTTAAAGGATTAACTTTAATTTTAAGAAAAATAAGGTAAGGAAAAGATTTTCATG
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG
* *
45288 CAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACAA
66 CAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCATAA
**
45353 AATGAACGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
131 AATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
*
45418 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
196 AAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
45450 GACTATGTTT
Statistics
Matches: 2251, Mismatches: 325, Indels: 69
0.85 0.12 0.03
Matches are distributed among these distances:
474 35 0.02
475 605 0.27
476 620 0.28
477 421 0.19
478 335 0.15
479 155 0.07
480 80 0.04
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
GCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG
CAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCATAA
AATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
AAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGA
AGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCG
TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCA
AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAGAATGG
AGACTATTATGAGAATCGAT
Found at i:44743 original size:954 final size:947
Alignment explanation
Indices: 42364--45449 Score: 4071
Period size: 954 Copynumber: 3.2 Consensus size: 947
42354 CCCAAACGTG
* * * * *
42364 GCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
1 GCTTGCTTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATG
* ** *
42429 CAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACCA
66 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCA-CA
* * *
42494 AAA-GAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
130 AAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * *
42558 AAAAATTGGTAGGAAAGAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAG
195 AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAG
** ** * * * * *
42623 AAGACTGCGTTTGTGGTGCCTAATCCTGAAAAGAATGAGGATTAGCACGAGTATTCATGTTTGTC
260 AAGACTATGTTTACGCTGCCTAATCCTAAAAAGAATG-GGATTAGTATGAGTATTCTTGTTTGTC
* * * *
42688 ATTTTTAAGAGATAAACTTTGATTTTATCGAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACC
324 ATATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACC
* ** * * * * * *
42753 AAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGATTCCTAATCTTAAAAGGAAT
389 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAAT
* * * ** *
42818 GGTGGCCATTATGAGAATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATA
454 GGAGGCTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATA
** *
42883 ACATAAAGAAAAGATTTCCATGCAAAATAAAATCTTCAATATCATTTATCCTGAA-GAGGAGAAT
519 GGATAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCT-AATGAGGAGAAT
* * * * * * * *
42947 -TGTTTACAGTACCTATTCAAAAAATGAAAAAATATCTTTACTAGAATCCATATGTATCTCATTA
583 GTGTTTATAGTACCTAATCATAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGTCTCATTT
* *
43011 GAGGCACGAACTTAGACTTTACAAAAATTGGTGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGC
648 GAGGCACGAACTTAGACTTTACAAAAATTGGTG-G-GAAAAAAGCCTTTCTTGCAAAACCAAAGC
* * * *
43076 ATCAATATGATGTATCCTAATAAGAAGACTATGTATACGCTGTCTAATCCTAAAAAGAACGGGGA
711 ATC-ATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGA
*
43141 TTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGA
775 TTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATC-AAAA-CGTGG-
*
43206 AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
837 AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTT
* *
43271 TTTGCTTCCCAATCCTAAAAAGAACGGAGACTATTATGAGAATCGAT
902 TTTGCTTCCCAAT-CTTAAAAGAATGGAGACTATTATGAGAATCGAT
** * * *
43318 GCTTGCCATATTTAAATGTTGAACTTTGATTTTAAGGAAAATAAGGCT-AAGAAAAAATTTCCAT
1 GCTTGCTTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGG-TAAAGAAAAGATTTCCA-
* * *
43382 TGTAAAAGAAAATCATCAATATCATTT-TCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCAC
64 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCAC
* * *
43446 TAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGCGAATTTAGACTTTA
129 AAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * * * *
43511 TAAAAATTGGGGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAA-ATCG-GGTATCCTAATA
194 CAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATA
* * * * * * *
43574 AGAAGACTATGTTTATGGC-ACCTAATCTCGAAAAA-AACGGGGATTATTATCAGTATTCTTGTG
258 AGAAGACTATGTTTA-CGCTGCCTAATC-CTAAAAAGAA-TGGGATTAGTATGAGTATTCTTGTT
* * *
43637 TGTCATATTTAAGAGACAAACTTTGATTCTCTCAAAAACGGTGGAAAGAAAAGGTTTTCTTACGA
320 TGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGA
* * *
43702 CACCAAAGCATCAGTGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCTTGAAAA
385 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTT-AAAA
* * *
43767 A-AATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGAA
449 AGAATGGAGGCTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGA
* * *
43831 AAATAGGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCGTTTATCCTAATGAGTA
514 AAATAGGATAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGA
* * *
43896 GATTGTGTTTGTAGTACCTAATCATAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTC
579 GAATGTGTTTATAGTACCTAATCATAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGTCTC
* *
43961 ATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTCGCAAAACCAAA
644 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAA
* ** * *
44026 GCATCATTATGATGTATCCTAATGAGAAGACTACATTTGTGGTGCCTAATCCTGAAAAGAACGGG
709 GCATCA-TATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGG
* * *
44091 GATTAGTATGAGTATTCATGTTTGTTGTATTTGAGAGACAAACTTTGATTTTATCGAAAACAGTG
773 GATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATC-AAAAC-GTG
* * * * *
44156 GAAAGAAAAGCTTCTCTTATGACACCAAAGCATCAATTTCGTGTATCCTAATAAAGGGAATGTGT
836 GAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGT
* * * * * * *
44221 GTTCGATTCCCAATCTTAAAAGGAATGGGGGCTATTACGAGAATCGAA
901 TTTTGCTTCCCAATCTTAAAA-GAATGGAGACTATTATGAGAATCGAT
* * *
44269 GCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACGTAAAGAAAAGATTTCCATG
1 GCTTGCTTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATG
* * * *
44334 CAAAATAAAATCATCAATATCATTTATCCCGAA-GAGGAGAAT-TGTTTATAGTACCTATTCAAA
66 CAAAAGAAAATCATCAATATCATTTAT-CCTAATGAGGAGAATGTGTTTATAGTACCTAATCACA
* * * * * *
44397 AAATGAAAAAAGAT-ATTTACTAGAATCTATATGTATCTCATTAGAGGCACGAACTTAGACTTTA
130 AAATGAATAAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
*
44461 CAAAAATTGGTGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
194 CAAAAATTGGTG-G-GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
*
44526 AAGAAGACTATGTTTACGCTGTCTAATCCTAAAAAGAATGGGAATTAGTATGAGTATTCTTGTTT
257 AAGAAGACTATGTTTACGCTGCCTAATCCTAAAAAGAATGGG-ATTAGTATGAGTATTCTTGTTT
* *
44591 GTCGTATTTAAGAGACAAAATTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGA
321 GTCATATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG-AAAGAAAAGCTTTTCTTACGA
44656 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAA
385 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAA
* * * * * * *
44721 GAATAGAGGCTATTACGAGAATCGATGATTGCCATATTTAAAAGATGAACTTTGATTTGAAGGAG
450 GAATGGAGGCTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAA
* * *
44786 AATAAGGCT-AAGAAAAGATTTCCATTGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
515 AAT-AGGATAAAGAAAAGATTTCCA-TGCAAAATAAAATCATCAATATCATTTATCCTAATGAGG
* * * *
44850 AGAATGTGTTTATAGTGCCAAATCACT-AAATGAATAAAGATCATTACTAGAATCCATGTTTGTC
578 AGAATGTGTTTATAGTACCTAATCA-TAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGTC
* * * * * *
44914 TCATTTGAGGCAGGAATTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTCTTGCAAAACTA
642 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCA
* * *
44979 AAGCATCAAATCG-TGTATCCTAATAAGAAGACTATGTTTATGGTACCTAATCCTAAAAAAAACG
707 AAGCATCATAT-GATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACG
* * * * * *
45043 GGGATTATTATCAGTATTCTTGTGTGTCGTATTTAAGTGACAAACTTTGATTCTGTCACAAACGA
771 GGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCA-AAACG-
*
45108 TGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGT
834 TGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGT
* *
45173 GTTTTTGCTTCTCAATCTTGAAAAGAATGGAGACTATTATGAGAATGGAT
899 GTTTTTGCTTCCCAATCTT-AAAAGAATGGAGACTATTATGAGAATCGAT
* * * * *
45223 GCTTGCTTTATTTAAAGGATTAACTTTAATTTTAAGAAAAATAAGGTAAGGAAAAGATTTTCATG
1 GCTTGCTTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATG
* *
45288 CAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACAA
66 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAA
** *
45353 AATGAACGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
131 AATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
*
45418 AAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
196 AAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
45450 GACTATGTTT
Statistics
Matches: 1844, Mismatches: 252, Indels: 73
0.85 0.12 0.03
Matches are distributed among these distances:
949 1 0.00
950 112 0.06
951 156 0.08
952 186 0.10
953 399 0.22
954 712 0.39
955 277 0.15
956 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (947 bp):
GCTTGCTTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAA
AATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
AAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGA
AGACTATGTTTACGCTGCCTAATCCTAAAAAGAATGGGATTAGTATGAGTATTCTTGTTTGTCAT
ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAA
AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAAAGAATGG
AGGCTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGG
ATAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
TTTATAGTACCTAATCATAAAATGAAAAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAG
GCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAT
ATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTA
TGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAACGTGGAAAGAAAAG
CTTTTCTTACGACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCC
CAATCTTAAAAGAATGGAGACTATTATGAGAATCGAT
Found at i:46788 original size:395 final size:395
Alignment explanation
Indices: 46058--47228 Score: 1950
Period size: 395 Copynumber: 3.0 Consensus size: 395
46048 CAAGAATCGA
* *
46058 GGCTTGCCTTATTTAAAGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * ** *
46123 GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCA-C
66 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
* * * *
46187 AAAATGAACGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
131 AAAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
*
46252 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAATGCATCATTATGATCTATTCAAATGA
195 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGA
* *
46317 GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAAGGATTAGTATGAGTATTCATGTTTGT
260 GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTTTGAGTATTCATGTTTGT
46382 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
325 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
46447 AAACGT
390 AAACGT
46453 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
46518 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
66 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
46583 AAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
131 AAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* *
46648 AAAAATTGGTGGGAAAAATGCCTTTCTTGAGAAACCAAAGCATCATTGTGATCTATTCAAATGAG
196 AAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGAG
46713 AAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTTTGAGTATTCATGTTTGTC
261 AAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTTTGAGTATTCATGTTTGTC
46778 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCCA
326 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCCA
46843 AACGT
391 AACGT
46848 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
*
46913 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTACTGACC
66 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
*
46978 AAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
131 AAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * * * * * * *
47043 AAAAATTGGTAGGAAAAAAGCTTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATAAG
196 AAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGAG
* * * * * **
47108 GAGACTACG-TTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTC
261 AAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTTTGAGTATTCATGTTTGTC
* * * *
47172 GTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTT
326 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAA-AAAAGCTTTTCTT
47229 ACGACACCAA
Statistics
Matches: 732, Mismatches: 42, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
394 89 0.12
395 638 0.87
396 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (395 bp):
GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
AAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
AAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGAG
AAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTTTGAGTATTCATGTTTGTC
ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCCA
AACGT
Found at i:47329 original size:870 final size:871
Alignment explanation
Indices: 46453--49454 Score: 5273
Period size: 870 Copynumber: 3.5 Consensus size: 871
46443 CCCCAAACGT
46453 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
**
46518 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACC
66 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTACCTAATGACC
* *
46583 AAAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
131 AAAATGAATAAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* *
46647 CAAAAATTGGTGGGAAAAATGCCTTTCTTGAGAAACCAAAGCATCATTGTGATCTATTCAAATGA
196 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGA
*
46712 GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTTTGAGTATTCATGTTTGT
261 GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGT
46777 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
326 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
46842 AAACGTGGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGAT
391 AAACGTGGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGAT
46907 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTA
456 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTA
46972 CTGACCAAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGA
521 CTGACCAAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGA
*
47037 CTTTACAAAAATTGGTAGGAAAAAAGCTTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCT
586 CTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCT
47102 AATAAGGAGACTACGTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGT
651 AATAAGGAGACTACGTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGT
47167 TTGTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACG
716 TTGTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACG
* *
47232 ACACCAAAGCATCAATATCAAGCATCCTAATGAAGGGAATGTGTTTTGGCATCAAAATCATGAAA
781 ACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAA
*
47297 AGAATGGAGACTACTACAAGAATCGA
846 AGAATGGAGACTGCTACAAGAATCGA
* *
47323 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * *
47388 GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCA-C
66 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTACCTAATGACC
* * *
47452 AAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
131 AAAATGAATAAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
47517 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGA
196 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGA
*
47582 GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGTGATTAGTATGAGTATTCATGTTTGT
261 GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGT
47647 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
326 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
47712 AAACGTGGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGAT
391 AAACGTGGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGAT
*
47777 TTTCATGCAAATGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTA
456 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTA
47842 CTGACCAAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGA
521 CTGACCAAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGA
47907 CTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCT
586 CTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCT
47972 AATAAGGAGACTACGTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGT
651 AATAAGGAGACTACGTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGT
48037 TTGTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACG
716 TTGTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACG
48102 ACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAA
781 ACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAA
*
48167 AGAATGGAGACTGCTACAAGAATTGA
846 AGAATGGAGACTGCTACAAGAATCGA
48193 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
** *
48258 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAACGACC
66 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTACCTAATGACC
* *
48323 AAAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
131 AAAATGAATAAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
*
48387 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCGTCATTATGATCTATTCAAATGA
196 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGA
48452 GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGT
261 GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGT
48517 CATATTTAAGAG--AAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
326 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
48580 AAACGTGGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGAT
391 AAACGTGGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGAT
48645 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTA
456 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTA
* *
48710 ATGACCAAAAGAATGAATATCATTACAAGAATCCATGTTTATCTCATTTGAGTCACGAACTTAGA
521 CTGACCAAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGA
48775 CTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCT
586 CTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCT
*
48840 AATGAGGAGACTACGTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGT
651 AATAAGGAGACTACGTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGT
48905 TTGTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACG
716 TTGTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACG
48970 ACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAA
781 ACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAA
*
49035 AGAATGGAGACTGCTACATGAATCGA
846 AGAATGGAGACTGCTACAAGAATCGA
*
49061 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
** * * * * * *
49126 GCAAAATCAAATCATCAATATCTTTTATCTTGA-AGAGGAGAAT-TGTTTATAGTACCT-GTTAA
66 GCAAAAGAAAATCATCAATATCATTTATCCT-ATTGAGGAGAATGTGTTTATAGTACCTAATGAC
* * * * * * * ** * *
49188 AAAAATGAAAAAAGATCTTTACTAGAATCCATATGTATCTCATTAAAGGAATGAACTTAGACTTT
130 CAAAATGAATAAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
** * * * *
49253 ACAAAAATTGGATTGAAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAA
195 ACAAAAATTGG--TGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAA
* * * * * *
49318 TGAGGAGACTATGTTTATGCTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTT
258 TGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTT
* * * * *
49383 TGTCGTATTCAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAA
323 TGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAA-AAAAGCTTTTCTTGCAA
*
49448 CACCAAA
387 CCCCAAA
49455 GCATCAATGT
Statistics
Matches: 2034, Mismatches: 89, Indels: 16
0.95 0.04 0.01
Matches are distributed among these distances:
866 5 0.00
867 70 0.03
868 626 0.31
869 123 0.06
870 1155 0.57
871 33 0.02
872 22 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (871 bp):
GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTACCTAATGACC
AAAATGAATAAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGA
GAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGT
CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCC
AAACGTGGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGAT
TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTA
CTGACCAAAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGA
CTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCT
AATAAGGAGACTACGTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGT
TTGTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACG
ACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAA
AGAATGGAGACTGCTACAAGAATCGA
Found at i:48092 original size:395 final size:395
Alignment explanation
Indices: 47323--48098 Score: 1180
Period size: 395 Copynumber: 2.0 Consensus size: 395
47313 CAAGAATCGA
* *
47323 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
47388 GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACA
66 GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACA
* *
47453 AAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
131 AAATGAACAAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * * *
47518 AAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCATTATGATCTATTCAAATGAG
196 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCATCAATATGATCTATCCAAATAAG
* * * *
47583 AAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGTGATTAGTATGAGTATTCATGTTTGTC
261 AAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
47648 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCCA
326 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCCA
47713 AACGT
391 AACGT
47718 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * ** * *
47783 GC-AAATGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTACTGAC
66 GCAAAAT-AAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCA-
** * *
47847 CAAAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTT
129 CAAAATGAACAAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * *
47911 ACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATA
194 ACAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCATCAATATGATCTATCCAAATA
* * ** *
47976 AGGAGACTACG-TTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGTTTG
259 AGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTG
* * * *
48040 TCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTT
324 TCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAA-AAAAGCTTTTCTT
48099 ACGACACCAA
Statistics
Matches: 342, Mismatches: 36, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
394 91 0.27
395 246 0.72
396 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (395 bp):
GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACA
AAATGAACAAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
AAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCATCAATATGATCTATCCAAATAAG
AAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCAACCCCA
AACGT
Found at i:48377 original size:159 final size:159
Alignment explanation
Indices: 47728--48378 Score: 418
Period size: 159 Copynumber: 4.1 Consensus size: 159
47718 GGCTTGCCTT
* **
47728 ATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAATGAA
1 ATTT-AAGGACGAACTTTGATTGTAAGGAAAATAGGTGCAAAGAAAAGATTTTCATGCAAAACAA
* * * * *
47792 AATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTACTGACCAAAAGAATG
65 AAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACCAAAAGAATG
*
47857 AATATCATTACAAGAATCCATGTTTGTCTC
130 AAGATCATTACAAGAATCCATGTTTGTCTC
* * * * * ** * *
47887 ATTTGAGTCACGAACTTAGACTT-TACA--AAAATTGGTAG-GAA-AAAAGCCTTTCCTGCGAAA
1 ATTTAAG-GACGAACTTTGA-TTGTA-AGGAAAATAGGT-GCAAAGAAAAGATTTTCATGCAAAA
* * * * * ** * * * *
47947 CCAAAGCGTCAATATGATGTATCCTAATAAGGAGACTACG-TTATGGTGCCTAATC-CTGAGAAG
62 CAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCAC-CAAAAG
** * ** * *
48010 AATGGGGATTAGTT-TGAGTATTCATGTTTGTCGT-
126 AATGAAGATCA-TTACAAGAATCCATGTTTGTC-TC
* * ** * * * * * * * *
48044 ATTTAAGAGACAAACTTTGATTTTATCGAAAA-CGGTGGAAAGAAAAGCTTTTCTTACGACACCA
1 ATTTAAG-GACGAACTTTGATTGTAAGGAAAATAGGTGCAAAGAAAAGATTTTCATGCAAAACAA
* * ** * **
48108 AAGCATCAATATCATGCATCCTAATGAAGG-GAATGTGTTT-TGGCATCCAAATCATGAAAAGAA
65 AAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAGTGT-CTAATCACCAAAAGAA
* ** * * * *
48171 TGGAGA-C-TGCTACAAGAATTGAGGCTTGCCTT
128 TGAAGATCAT--TACAAGAATCCATGTTTGTCTC
* *
48203 ATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAA
1 ATTT-AAGGACGAACTTTGATTGTAAGGAAAATAGGTGCAAAGAAAAGATTTTCATGCAAAACAA
* * *
48267 AATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAA-CGACCAAAAGAAT
65 AAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATC-ACCAAAAGAAT
*
48331 GAATATCATTACAAGAATCCATGTTTGTCTC
129 GAAGATCATTACAAGAATCCATGTTTGTCTC
*
48362 ATTTGAGGCACGAACTT
1 ATTTAAGG-ACGAACTT
48379 AGACTTTACA
Statistics
Matches: 359, Mismatches: 104, Indels: 58
0.69 0.20 0.11
Matches are distributed among these distances:
156 5 0.01
157 58 0.16
158 115 0.32
159 167 0.47
160 13 0.04
161 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.30
Consensus pattern (159 bp):
ATTTAAGGACGAACTTTGATTGTAAGGAAAATAGGTGCAAAGAAAAGATTTTCATGCAAAACAAA
AGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACCAAAAGAATGA
AGATCATTACAAGAATCCATGTTTGTCTC
Found at i:49480 original size:477 final size:475
Alignment explanation
Indices: 48587--53767 Score: 6044
Period size: 477 Copynumber: 10.9 Consensus size: 475
48577 CCCAAACGTG
*
48587 GCTTGCCTTATTTAAAGG-ATGAACTTTGATTGT-AAGGAAAATAGGGCAAAGAAAAGATTTTCA
1 GCTTGCCTTATTT-AAGGTATGAACTTTGATT-TAAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * *
48650 TGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGAC
64 TGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-
* * * *
48715 CAAAA-GAATGAATATCATTACAAGAATCCATGTTTATCTCATTTGAGTCACGAACTTAGACTTT
128 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* *
48779 ACAAAAATTGGTAGGAAAAAA-GCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAAT
193 ACAAAAATTGGT-GGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * * *
48843 GAGGAGACTACG-TTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTTTGAGTATTCATGTTT
257 GAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-GGGATTAGTATGAGTATTCATGTTT
* * *
48907 GTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC
321 GTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * *
48972 ACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAG
386 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAAG
* * *
49037 AATGGAGACTGCTACATGAATCGAG
451 AATGGAGACTGTTACAAGAATCGAT
* *
49062 GCTTGCCTTATTTAAAGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GCTTGCCTTATTT-AAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
** * * * ** * *
49126 GCAAAATCAAATCATCAATATCTTTTATCTTGAA-GAGGAGAAT-TGTTTATAGTACCTGTTAAA
65 GCAAAAAAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATCAC
** * * * * ** * *
49189 AAAATGAAAAAAGATCTTTACTAGAATCCATATGTATCTCATTAAAGGAATGAACTTAGACTTTA
129 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
*
49254 CAAAAATTGGATTGAAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
194 CAAAAATTGG--TGGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* *
49319 GAGGAGACTATGTTTATGCTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTT
257 GAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-GGGATTAGTATGAGTATTCATGTTT
* * * *
49384 GTCGTATTCAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAAC
321 GTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * * * *
49449 ACCAAAGCATCAATGTCTTGTA-CTTTAATGAAGTGAGTGTGTTTTCGCTTCCCAATCTTAAAAA
386 ACCAAAGCATCAATGTCATGTATC-CTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAA
* * ** *
49513 GGATGGAGACTATTATGAGAATCAAT
450 GAATGGAGACTGTTACAAGAATCGAT
* * *
49539 GCTTGCCATATTTAAAAG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
1 GCTTGCCTTATTT-AAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
* * *
49603 --AAAAAAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACC
65 GCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * *
49666 AAATGAATAAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAT
130 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * * *
49731 AAAAATTGGGGGGAAGAAA-GCCTTCCTTGCGAAACCAAAGCATCAATGTTG-TGTATCTTAATA
195 AAAAATT-GGTGGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAAT-ATGATGTATCCTAATG
* * * * * * *
49794 AGAAGACTACGTTTATGGTACCTAATCCTGAAAAAAAAAAGGGATTATTATCAGTATTCTTGTTT
258 AGAAGACTATGTTTATGGTGCCTAATCCT--AAAAAGAATGGGATTAGTATGAGTATTCATGTTT
* * * *
49859 GTCGTATTTAAGAGACAAACTTTGATTATGTTAAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC
321 GTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * * *
49924 ACCAGAGCATCAATGTCTTGCATCCTAATGAAAGGAATATGTTTTTGCTT-CTCAATCTTGAAAA
386 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCT-AATCTTGAAAA
**
49988 GAATGGAGACTGTTATGAGAATCGAT
450 GAATGGAGACTGTTACAAGAATCGAT
* *
50014 GCTTGCCTTATTTAAAGG-ATGAACTTTGATTTTAA-GAATAATAGGGTAAAGAAAAGATTTCCA
1 GCTTGCCTTATTT-AAGGTATGAACTTTGATTTAAAGGAA-AATAGGGCAAAGAAAAGATTTCCA
* * * * * * * *
50077 TGCAAAATAAAATCATCAATATCGTTTATCCTAAAGAGCAGATTGTGTTTGTAGTACCTAATCAT
64 TGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
50142 AAAATG-ATCGAAGGTCTTTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTT
129 AAAATGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
50206 ACAAAAATTGGTGGGAAAAAA-GCCTTTCTCGCAAAACCAAAGCATCATTATGATGTATTC-AA-
193 ACAAAAATTGGT-GGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * *
50268 -ATAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
257 GAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-GGGATTAGTATGAGTATTCATGTTT
** * *
50332 GTAATATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-GTGAAAGAAAATCTTTTCTTGCAA
321 GTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG-GAAAGAAAAGCTTTTCTTGCGA
* ** * *
50396 C-CCAAAGCATCAATGTCATTTGCCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCTTGAAAA
385 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAA
* *
50460 GAATGGAGACTATTACAAGAATCAAT
450 GAATGGAGACTGTTACAAGAATCGAT
* * * *
50486 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAATGAAAATAGGGCAAATAAATGATTTCCAAG
1 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * * *
50551 CAAAAAAAAAATTATCAATATCATTTATCCTAATAAGGAGAATGTGTTTACAGTGTCTAATCACA
66 C-AAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * *
50616 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTGAAGCACGAACATAGACTTTAC
130 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * *
50681 AAAAATTGGTGGGAAAAATACTTTTCTTGCGAAACCAAAGCATCAATATCG-TGTATCTTAATGA
195 AAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGA
* * ** ** * *
50745 GAAGACTATGTTTATGGTGCCCAATCCTAAAAAGGATGGGCATTAGGGTCTGTCTTCATGTTTTT
259 GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGT
* * * * * *
50810 CATCTTTAAGA-AGCACACTTTGATTCTATTAAAAACGGTGGGAAA-AAAAGCATTTCTCGCGAC
323 CGTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGT-GGAAAGAAAAGCTTTTCTTGCGAC
* * *
50873 ACCAAAGCATCAATGTCATATATCCTAATGAAGCGAATGTGCTTTTGGCTTCCTAGTCTTGAAAA
386 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCTAATCTTGAAAA
* *
50938 TAATGGAGATTGTTACAAGAATCGAT
450 GAATGGAGACTGTTACAAGAATCGAT
* * * *
50964 GCTTGCCTTACTTAAGCTATGAACTTTGATTTAAAGGAAAATTGGGCAAAGAAAGGATTTCCATG
1 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * *
51029 CAAAAAAAAAAAAATCATCAATATCATTTATCTTAATTAGGAGAATGTGTTTACAGTGCCTAAT-
66 C----AAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * *
51093 -C--ATTGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGGACTTAGACTT
127 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * *
51155 TACTAAAATTGGTGG-GAAAATGCCTTTCTTGTGTAACCAAAGCATCAATATGATGTATCCTAAT
192 TACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * *
51219 GACAAGGCTATGTTTATGGTGTCTAATCCTGAAAAGAATAGGGATATTAGTATGAGTATACATTA
257 GAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-GGG--ATTAGTATGAG--T--ATT-
* * * *
51284 CATGTTTGTTGTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTC
314 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * *
51349 TTGCGATACCAAAGCATCAATATCATTTATCCCAATGGAGGGAAAGTGTTTTGGGCTTCCCAATC
379 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT-GGCTTCCTAATC
* ** *
51414 TTGAAAAGAAAGGAGACTGTTATGAGAATCAAT
443 TTGAAAAGAATGGAGACTGTTACAAGAATCGAT
* * * *
51447 GCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAACAGGGCAAAGAAAAGATTCCCATG
1 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* *
51512 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTG-CTAATCACAA
66 CAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * * *
51576 ATTGAATGAAAATCATTACTAGATTCTATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACG
131 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * *
51641 AAATTTGGTGGGAAAAATGCCTTTCTTGCGAAACTAAAGCATGAATATCGCA--TATCATAATTA
196 AAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATAT-G-ATGTATCCTAATGA
* * ** *
51704 AAAGACTATGTTTATGCTGCCTAATCCTGAAAAAGGGTGAGGATTAGTATGAGTATTCATGTTTA
259 GAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATG-GGATTAGTATGAGTATTCATGTTTG
** *
51769 TCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTAACC
322 TCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * *
51834 CCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAG
387 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCTAATCTTGAAAAG
* **
51899 AATGGAGACTATTATGAGAATCGAT
451 AATGGAGACTGTTACAAGAATCGAT
* * * * *
51924 GCTTGCCTTATATAAGGTATGAACTTAGAATTGAAGGAAAATAGGGCAAAGAAAAGATTCCCATG
1 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * * *
51989 CAAAAGAAAATCATGAATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAA
66 CAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * **
52054 AATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTGGGGCACGAACAAAGACTTTACA
131 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * *
52119 AAAATTGGTGGGAAAAATTACCTTTCTTGGGAAACCAAAGCATCAATGTTG-TGTATTCTAATGA
196 AAAATTGGT-GGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAAT-ATGATGTATCCTAATGA
* * * *
52183 GAAGACTATGTTTACGGTGCCTAATCCTAAAAAGGATGGGCATCAGTGTGAGTATTATTCATGTT
259 GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGG-ATTAGTATGAG---TATTCATGTT
* * * * * * *
52248 TTTCATATTTAAGAGGCAAACTTTGATTCTATAAAAAACGGTGAAAAGAAAAGCATTTCTCGCGA
320 TGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * * *
52313 CACCAAAGCTTCAATGTC----CTCCTAAGGAAGGGAATGTGCTTTTGGCTTCCTAGTCTTGAAA
385 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCTAATCTTGAAA
* *
52374 AGAATAGAGACTGTTACAAGAATCAAT
449 AGAATGGAGACTGTTACAAGAATCGAT
* * * * *
52401 GCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGAAAAATAGGGTAAAGAAAAGATTCCCATG
1 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * *
52466 CAAAAAGAAAATCATCAATATCATCTATCCTAATGAGGAGAATGTGTTTACAGTGCTTAATCACA
66 CAAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * * *
52531 AAATGGATGAAGATCGTTATTAGAATCCATGTTTGTTTCATTTGAGGCACGAACATAGACTTTAC
130 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * *
52596 AAAAATTGGTGGGAAAAATACCTTTCCTGCGAAACCAAAGCATCAATATCG-TGTATCCTAATAA
195 AAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGA
* * * * * * *
52660 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGGGCATCAGTGTGAGTATTCTTGTTTTT
259 GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGT
* * * *
52725 CATATTTAAGAGACAAACTTTGATTCTAT-AAAAA------ACAG-AAAGCATTTCTCGCGACAC
323 CGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * * *
52782 CAAAGCGTCAATGTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTGCTAGTCTTAAAAAGA
388 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCTAATCTTGAAAAGA
*
52847 ATGGAGACTATTACAAGAATCGAT
452 ATGGAGACTGTTACAAGAATCGAT
* * * *
52871 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAACATGGCAAAGAAATGATTTCCAAG
1 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * *
52936 TAAAAAAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTACAGTGCCTAATTC-CA
66 CAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA-TCACA
* *
53000 AAATGAATGAAGATCATTACTATAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAC
130 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * ** *
53065 TAAAATTGATGGAAAAAAATGCCTTTCTTGCGAGTCCAAAGCATCAATATCATGTATCCTAATGA
195 AAAAATTGGTGG-AAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGA
* *
53130 GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTAATGTTTGT
259 GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA-TGGGATTAGTATGAGTATTCATGTTTGT
* * * * *
53195 CGTTTTTAAGAGACAAACTTTGACTCTATC-AAATCGATGGAAAAAAAAAGCTTTTCTTGCGACA
323 CGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTGCGACA
** * *
53259 CCAAAGCAGGAATGTGATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAG
387 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCTAATCTTGAAAAG
* * *
53324 ATTGGAGTCTGTTGCAAGAATCGAT
451 AATGGAGACTGTTACAAGAATCGAT
* * * ** * * *
53349 GCTTGGCTTATTTATGGCATGAACTTTGACGTAAAGGAAAGTAGGGCAAAGAAAGGATTTGCATG
1 GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * * *
53414 -----------CATCAATATCATTTATCCCAATTAGGAGAATGTGTTTATAGTGTCTAATCCCAA
66 CAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * *
53468 AATGAATGAAGATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGAATGAACTTAGACTTTACA
131 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * *
53533 AAAATTGGCGGGAAAAATGCCTTTCTTGC-AAGCCCAAAGCATCAATATGATGTGTCCTAATGAG
196 AAAATTGGTGGAAAAAATGCCTTTCTTGCGAA-ACCAAAGCATCAATATGATGTATCCTAATGAG
* * * * *
53597 AAGACGATGTTTATGGTGCCTAATCCTGAAAATAACTGGGATTAGTATGAGTATGCATGTTTATC
260 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA-TGGGATTAGTATGAGTATTCATGTTTGTC
* * * *
53662 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGTGACACC
324 GTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * *
53727 AAAGCATCAATATCATTTATCTTAATG-AGGAGAATGTGTTT
389 AAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTT
53768 ACAGTGCCTA
Statistics
Matches: 4049, Mismatches: 561, Indels: 202
0.84 0.12 0.04
Matches are distributed among these distances:
465 7 0.00
466 215 0.05
467 125 0.03
469 120 0.03
470 250 0.06
471 7 0.00
472 138 0.03
473 237 0.06
474 210 0.05
475 362 0.09
476 319 0.08
477 974 0.24
478 481 0.12
479 116 0.03
480 4 0.00
481 138 0.03
482 87 0.02
483 248 0.06
484 10 0.00
485 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
GCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
CAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
AAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
AGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCGT
ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAAGAATGG
AGACTGTTACAAGAATCGAT
Found at i:54030 original size:313 final size:316
Alignment explanation
Indices: 53413--54080 Score: 904
Period size: 313 Copynumber: 2.1 Consensus size: 316
53403 GGATTTGCAT
* * * * *
53413 GCATCAATATCATTTATCCCAATTAGGAGAATGTGTTTATAGTGTCTAATCCCAAAATGAATGAA
1 GCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* *
53478 GATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGAATGAACTTAGACTTTACAAAAATTGGCG
66 GATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGAACGAACTTAGACTTTACAAAAATTGGCG
* * * * *
53543 GGAAAAATGCCTTTCTTGCAAGCCCAAAGCATCAATATGATGTGTCCTAATGAGAAGACGATGTT
131 GGAAAAATGCCTTGC-TGCAAGCCCAAAGCATCAATATGATGTATCCTAATGAAAACACGACGTT
** *
53608 TATGGTGCCTAATCCTGAAAATAACTGGGATTAGTATGAGTATGCATGTTTATCATATTTAAGAG
195 TATCCTGCCTAATCCTGAAAAGAACTGGGATTAGTATGAGTATGCATGTTTATCATATTTAAGAG
53673 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGTGACACC-AAA
260 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGTGAC-CCTAAA
*
53730 GCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
1 GCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
* * * * * *
53795 GATCATTTCTGGAATCCGTA-TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATTTGGT
66 GATCATTACTAGAATCC-AAGTTTGTCTCATTTGAGGAACGAACTTAGACTTTACAAAAATTGGC
* * * *
53859 GGGAAAAATGCCTTGC-G-AAG-CTAAATCATCAATATCG-TGTATCCTAATTAAAACACTACGT
130 GGGAAAAATGCCTTGCTGCAAGCCCAAAGCATCAATAT-GATGTATCCTAATGAAAACACGACGT
** * *
53920 TTATCCTGCCTAATCCTGAAAAGGTC-GAGGATTAGTATGAGTATTCATGTTTGTCATATTTAAG
194 TTATCCTGCCTAATCCTGAAAAGAACTG-GGATTAGTATGAGTATGCATGTTTATCATATTTAAG
* * *
53984 AGACAAACTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGACCCTAAA
258 AGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGTGACCCTAAA
*
54043 GCATCAATGTCATGTT-TCCTAATGAAGG-GAATGTGTTT
1 GCATCAATATCAT-TTATCCTAATG-AGGAGAATGTGTTT
54081 TTGGCTTCGC
Statistics
Matches: 310, Mismatches: 35, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
312 3 0.01
313 168 0.54
314 9 0.03
315 1 0.00
317 128 0.41
318 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Consensus pattern (316 bp):
GCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGAACGAACTTAGACTTTACAAAAATTGGCG
GGAAAAATGCCTTGCTGCAAGCCCAAAGCATCAATATGATGTATCCTAATGAAAACACGACGTTT
ATCCTGCCTAATCCTGAAAAGAACTGGGATTAGTATGAGTATGCATGTTTATCATATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGTGACCCTAAA
Found at i:54517 original size:790 final size:782
Alignment explanation
Indices: 52947--54527 Score: 2110
Period size: 790 Copynumber: 2.0 Consensus size: 782
52937 AAAAAAAAAT
52947 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTACAGTGCCTAATTCCAAAATGAATGAAG
1 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTACAGTGCCTAATTCCAAAATGAATGAAG
* * *
53012 ATCATTACTATAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACTAAAATTGATGG
66 ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACTAAAATTGATGG
* * *
53077 AAAAAAATGCCTTTCTTGCGAGTCCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
131 AAAAAAATGCC--TCTTGCGAGTCCAAAGCATCAATATCATGTATCCTAATGAAAACACTACGTT
** * * *
53142 TATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTAATGTTTGTCGTTTTTAAGAG
194 TATCCTGCCTAATCCTAAAAAGAACGAGGATTAGTATGAGTATTAATGTTTGTCATATTTAAGAG
* *
53207 ACAAACTTTGACTCTATCAAATCGATGGAAAAAAAAAGCTTTTCTTGCGACACCAAAGCAGGAAT
259 ACAAACTTTGACTCTATAAAATCGATGGAAAAAAAAAGCTTTTCTTGCGACACCAAAGCAGCAAT
* * *
53272 GTGATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGATTGGAGTCTGTT
324 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTT
* * *
53337 GCAAGAATCGATGCTTGGCTTATTTATGGCATGAACTTTGACGTAAAGGAAAGTAGGGCAAAGAA
389 ACAAGAATCGATGCTTGGCTTATTTAAGGCATGAACTTTGACGTAAAGGAAAATAGGGCAAAGAA
* * * ** * *
53402 AGGATTTGCATGCATCAATATCATTTATCCCAATTAGGAGAATGTGTTTATAGTGTCTAATCCCA
454 AAGATTTGCAAGCATAAATATCATTTATCCCAACGAGGAGAATGTGTTTACAGTGTCTAATCACA
* * *
53467 AAATGAATGAAGATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGAATGAACTTAGACTTTAC
519 AAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGAACGAACATAGACTTTAC
* * * * *
53532 AAAAATTGGCGGGAAAAATGCCTTTCTTGCAAGCCCAAAGCATCAATATGATGTGTCCTAATGAG
584 AAAAATTGGCGGGAAAAATACCTTTCCTGCAAGACCAAAGCATCAATATGATGTATCCTAATAAG
* *
53597 AAGACGATGTTTATGGTGCCTAATCCTGAAAATAACTGGGATTAGTATGAGTATGCATGTTTATC
649 AAGACGATGTTTATGGTGCCTAATCCTGAAAAGAACTGGGATCAGTATGAGTATGCATGTTTATC
* * * *
53662 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAACTTTTCTTGTGACACC
714 ATATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGAAAAGAAAAACATTTCTCGCGACACC
53727 AAAG
779 AAAG
*
53731 CATCAATATCATTTATCTTAATGAGGAGAATGTGTTTACAGTGCCTAA-TCACAAAATGAATGAA
1 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTACAGTGCCTAATTC-CAAAATGAATGAA
* * * *
53795 GATCATTTCTGGAATCCGTATTTGTCTCATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGGT
65 GATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACTAAAA-TTGAT
* * * * *
53859 GG-GAAAAATG-C-CTTGCGAAG-CTAAATCATCAATATCGTGTATCCTAATTAAAACACTACGT
129 GGAAAAAAATGCCTCTTGCG-AGTCCAAAGCATCAATATCATGTATCCTAATGAAAACACTACGT
* ** *
53920 TTATCCTGCCTAATCCTGAAAAGGTCGAGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGA
193 TTATCCTGCCTAATCCTAAAAAGAACGAGGATTAGTATGAGTATTAATGTTTGTCATATTTAAGA
* * * * *
53985 GACAAACTTTGATTCTATGAAAAAT-GGT-GAAAAGAAAAGCTTTTCTTGTGAC-CCTAAAGCAT
258 GACAAACTTTGACTCTAT--AAAATCGATGGAAAAAAAAAGCTTTTCTTGCGACACC-AAAGCAG
*
54047 CAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTCGC-AGTCTTGAAAAGAATGGAGA
320 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTC-CTAGTCTTGAAAAGAATGGAGA
* * * ** *
54111 CTGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCA
384 CTGTTACAAGAATCGATGCTTGGCTTATTTAAGGCATGAACTTTGACGTAAAGGAAAATAGGGCA
*
54176 AAGAAAAGATTCTCGTGCAAAAGAAAATCATAAATATCATTTATCCTAACGAGGAGAATGTGTTT
449 AAGAAAAGA-T-T--TGC--AAG-----CATAAATATCATTTATCCCAACGAGGAGAATGTGTTT
* * * *
54241 ACAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTTTCATTTGAGGCA
503 ACAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGAA
* *
54306 CGAACATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCCTGCGAA-ACCAGAGCATCAATA
568 CGAACATAGACTTTACAAAAATTGGCGGGAAAAATACCTTTCCTGC-AAGACCAAAGCATCAATA
* * *
54370 TCG-TGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGA-TGGGCATCAGT
632 T-GATGTATCCTAATAAGAAGACGATGTTTATGGTGCCTAATCCTGAAAAGAACTGGG-ATCAGT
* * * * *
54433 GTGAGTATTCTTGTTTTTCATATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTCG-AAAGA
695 ATGAGTATGCATGTTTATCATATTTAAGAGACAAACTTTGATTCTATAAAAAACGGT-GAAAAGA
*
54497 AAAGCATTTCTCGCGACACCAAAG
759 AAAACATTTCTCGCGACACCAAAG
54521 CATCAAT
1 CATCAAT
54528 GTCAAGTATC
Statistics
Matches: 693, Mismatches: 82, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
778 2 0.00
779 262 0.38
780 6 0.01
781 5 0.01
782 1 0.00
783 16 0.02
784 114 0.16
785 2 0.00
789 4 0.01
790 277 0.40
791 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (782 bp):
CATCAATATCATTTATCATAATGAGGAGAATGTGTTTACAGTGCCTAATTCCAAAATGAATGAAG
ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACTAAAATTGATGG
AAAAAAATGCCTCTTGCGAGTCCAAAGCATCAATATCATGTATCCTAATGAAAACACTACGTTTA
TCCTGCCTAATCCTAAAAAGAACGAGGATTAGTATGAGTATTAATGTTTGTCATATTTAAGAGAC
AAACTTTGACTCTATAAAATCGATGGAAAAAAAAAGCTTTTCTTGCGACACCAAAGCAGCAATGT
CATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTAC
AAGAATCGATGCTTGGCTTATTTAAGGCATGAACTTTGACGTAAAGGAAAATAGGGCAAAGAAAA
GATTTGCAAGCATAAATATCATTTATCCCAACGAGGAGAATGTGTTTACAGTGTCTAATCACAAA
ATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGAACGAACATAGACTTTACAA
AAATTGGCGGGAAAAATACCTTTCCTGCAAGACCAAAGCATCAATATGATGTATCCTAATAAGAA
GACGATGTTTATGGTGCCTAATCCTGAAAAGAACTGGGATCAGTATGAGTATGCATGTTTATCAT
ATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGAAAAGAAAAACATTTCTCGCGACACCAA
AG
Found at i:54562 original size:477 final size:474
Alignment explanation
Indices: 53731--55504 Score: 2391
Period size: 477 Copynumber: 3.7 Consensus size: 474
53721 GACACCAAAG
*
53731 CATCAATATCATTTATCTTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * * *
53796 ATCATTTCTGGAATCCGTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * *
53861 GAAAAATG-C---CTTGCGAAGCTAAATCATCAATATCGTGTATCCTAATTAA-AACACTACGTT
131 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA-TAAGAAGACTATGTT
** *
53921 TATCCTGCCTAATCCTGAAAAG-GTCGAGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGA
195 TATGGTGCCTAATCCTGAAAAGAAT-G-GGATTAGTATGAGTATTCATGTTTGTCATATTTAAGA
*
53985 GACAAACTTTGATTCTATGAAAAATGGT-GAAAAGAAAAGCTTTTCTTGTGAC-CCTAAAGCATC
258 GACAAACTTTGATTCTAT-AAAAATGGTCGAAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATC
*
54048 AATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTCGC-AGTCTTGAAAAGAATGGAGAC
321 AATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTC-CTAGTCTTGAAAAGAATGGAGAC
* * *
54112 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAA
384 TGTTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAA
*
54177 AGAAAAGA-TTCTCGTGCAAAAGAAAAT
449 AGAAAAGATTTC-CATGCAAAA-AAAAT
* * *
54204 CATAAATATCATTTATCCTAACGAGGAGAATGTGTTTACAGTGTCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
54269 ATCATTACTAGATTCCATGTTTGTTTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
54334 GAAAAATACCTTTCCTGCGAAACCAGAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTT
131 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTT
* * * * * *
54399 ATGGTGCCTAATCTTGAAAAGGATGGGCATCAGTGTGAGTATTCTTGTTTTTCATATTTAAGAGA
196 ATGGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGA
* *
54464 CAAACTTTGATTCTATAAAAAATGGTCG-AAAGAAAAGCATTTCTCGCGACACCAAAGCATCAAT
260 CAAACTTTGATTCTAT-AAAAATGGTCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * *
54528 GTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTATT
324 GTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTT
*
54593 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTCATTTAAAGGAAAATAGGGCAAAGAA
388 ACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
* * *
54658 ATGATTTCCAAGTAAAAAAAAT
453 AAGATTTCCATGCAAAAAAAAT
* *
54680 CATCAATATCATTTATCCTGATGAGGAGAATGTGTTTACAGTGCCTAATCCCAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
54745 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACTAAAATTGAT-G
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * *
54809 GAAAAATTGTCTTTCTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
131 GAAAAA-TGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTT
* * *
54874 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-ATTAATGTTTGTCGTTTTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAG
* * * * *
54938 ACAAACTTTGACTCTAT-CAAATCGAT-GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAGCAA
259 ACAAACTTTGATTCTATAAAAAT-GGTCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * *
55001 TGTGATGTATCCTAATGAAGGGAATGTGTTGTTGGCTTCCTAGTCTTGAAAAGATTGGAGTCTGA
323 TGTCATGTATCCTAATGAAGGGAATGTGTT-TTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGT
* * * * * *
55066 TGCAAGAATCGATGCTTGGCTTATTTATGGCATGAACTTTGATGTAAAGGAAAGTAGGGCAAAG-
387 TACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
*
55130 AAAGTATTTGCATGCAAAATAAAAT
452 AAAG-ATTTCCATGCAAAA-AAAAT
* *
55155 CATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
55220 ATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
55285 GAAAAATGCCTTTCTTGC-AAACCCAAAGCATCAATAT-GATGTGTCCTAATCAGAAGACGATGT
131 GAAAAATGCCTTTCTTGCGAAA-CCAAAGCATCAATATCG-TGTATCCTAATAAGAAGACTATGT
* * * * *
55348 TTATGGTGCCTAATCCTGAAAATAACTGGGAGTAGTATGAGTATACATGTTTATCGTATTTAAGA
194 TTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGA
* *
55413 GACAAACTTTGATTCTATCAAAAACGG-CGAAAAGAAAAACTTTTCTTGCGACACCAAAGCATCA
258 GACAAACTTTGATTCTAT-AAAAATGGTCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * *
55477 ATATCATTTATCTTAATG-AGGAGAATGT
322 ATGTCATGTATCCTAATGAAGG-GAATGT
55505 ATTTATAGTG
Statistics
Matches: 1147, Mismatches: 127, Indels: 50
0.87 0.10 0.04
Matches are distributed among these distances:
473 135 0.12
474 160 0.14
475 251 0.22
476 258 0.22
477 333 0.29
478 10 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (474 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGAC
AAACTTTGATTCTATAAAAATGGTCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
CATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTTACA
AGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
ATTTCCATGCAAAAAAAAT
Found at i:55410 original size:951 final size:948
Alignment explanation
Indices: 53731--55478 Score: 2545
Period size: 951 Copynumber: 1.8 Consensus size: 948
53721 GACACCAAAG
*
53731 CATCAATATCATTTATCTTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
53796 ATCATTTCTGGAATCCGTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGG
66 ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATTTGATGG
* * * *
53861 GAAAAATGCCTTGCGAAGCTAAATCATCAATATCGTGTATCCTAATTAAAACACTACGTTTATCC
131 GAAAAATGCCTTGCGAAGCCAAAGCATCAATATCATGTATCCTAATGAAAACACTACGTTTATCC
* *
53926 TGCCTAATCCTGAAAAGGTCGAGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAA
196 TGCCTAATCCTGAAAAGATCGAGGATTAGTATGAGTATTAATGTTTGTCATATTTAAGAGACAAA
* * * *
53991 CTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGACCCTAAAGCATCAATGTCAT
261 CTTTGACTCTAT-AAAAATGATGAAAAGAAAAGCTTTTCTTGCGACCCTAAAGCAGCAATGTCAT
* * * *
54056 GTTTCCTAATGAAGGGAATGTGTTTTTGGCTTCGCAGTCTTGAAAAGAATGGAGACTGTTACGAG
325 GTATCCTAATGAAGGGAATGTGTTGTTGGCTTCGCAGTCTTGAAAAGAATGGAGACTGATACAAG
* * * *
54121 AATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGAT
390 AATCGATGCTTGGCTTATTTAAGGCATGAACTTTGATGTAAAGGAAAATAGGGCAAAGAAAAGAT
* * *
54186 TCTCGTGCAAAAGAAAATCATAAATATCATTTATCCTAACGAGGAGAATGTGTTTACAGTGTCTA
455 TCTCATGCAAAAGAAAATCATAAATATCATTTATCCCAACGAGGAGAATGTGTTTACAGTGCCTA
* * *
54251 ATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTTTCATTTGAGGCACGAACATAGA
520 ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAGA
*
54316 CTTTACAAAAATTGGTGGGAAAAATACCTTTCCTGCGAAACCAGAGCATCAATATCGTGTATCCT
585 CTTTACAAAAATTGGTGGGAAAAATACCTTTCCTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * * *
54381 AATAAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGGATGGGCATCAGTGTGAGTATTCTTG
650 AATAAGAAGACGATGTTTATGGTGCCTAATCCTGAAAAGAATGGGCATCAGTATGAGTATACATG
* * *
54446 TTTTTCATATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTCG-AAAGAAAAGCATTTCTCG
715 TTTATCATATTTAAGAGACAAACTTTGATTCTATAAAAAACGG-CGAAAAGAAAAACATTTCTCG
54510 CGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTCCTAGTCTTG
779 CGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTCCTAGTCTTG
54575 AAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTCATTTAAA
844 AAAAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTCATTTAAA
54640 GGAAAATAGGGCAAAGAAATGATTTCCAAGTAAAAAAAAT
909 GGAAAATAGGGCAAAGAAATGATTTCCAAGTAAAAAAAAT
* *
54680 CATCAATATCATTTATCCTGATGAGGAGAATGTGTTTACAGTGCCTAATCCCAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* *
54745 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACTAAAA-TTGAT-
66 ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGATG
* * *
54808 GGAAAAATTGTCTTTCTTGCG-AGACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
130 GGAAAAA-TG-C---CTTGCGAAG-CCAAAGCATCAATATCATGTATCCTAATGAAAACACTACG
** * * *
54872 TTTATGGTGCCTAATCCTGAAAAGAAT-GGGGATTAGTATGAG-ATTAATGTTTGTCGTTTTTAA
189 TTTATCCTGCCTAATCCTGAAAAG-ATCGAGGATTAGTATGAGTATTAATGTTTGTCATATTTAA
* *
54935 GAGACAAACTTTGACTCTAT-CAAATCGATGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCAG
253 GAGACAAACTTTGACTCTATAAAAAT-GATGAAAAGAAAAGCTTTTCTTGCGAC-CCTAAAGCAG
* * *
54998 CAATGTGATGTATCCTAATGAAGGGAATGTGTTGTTGGCTTC-CTAGTCTTGAAAAGATTGGAGT
316 CAATGTCATGTATCCTAATGAAGGGAATGTGTTGTTGGCTTCGC-AGTCTTGAAAAGAATGGAGA
* * *
55062 CTGATGCAAGAATCGATGCTTGGCTTATTTATGGCATGAACTTTGATGTAAAGGAAAGTAGGGCA
380 CTGATACAAGAATCGATGCTTGGCTTATTTAAGGCATGAACTTTGATGTAAAGGAAAATAGGGCA
* * *
55127 AAG-AAAGTATT-TGCATGCAAAATAAAATCATCAATATCATTTATCCCAATGAGGAGAATGTGT
445 AAGAAAAG-ATTCT-CATGCAAAAGAAAATCATAAATATCATTTATCCCAACGAGGAGAATGTGT
* *
55190 TTATAGTGCCTAATCACAAAATGAATGAAGATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGG
508 TTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* * * *
55255 CATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC-AAACCCAAAGCATCAA
573 CACGAACATAGACTTTACAAAAATTGGTGGGAAAAATACCTTTCCTGCGAAA-CCAAAGCATCAA
* * *
55319 TAT-GATGTGTCCTAATCAGAAGACGATGTTTATGGTGCCTAATCCTGAAAATAACTGGG-AGT-
637 TATCG-TGTATCCTAATAAGAAGACGATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGCA-TC
* *
55381 AGTATGAGTATACATGTTTATCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGAAAA
699 AGTATGAGTATACATGTTTATCATATTTAAGAGACAAACTTTGATTCTATAAAAAACGGCGAAAA
* *
55446 GAAAAACTTTTCTTGCGACACCAAAGCATCAAT
764 GAAAAACATTTCTCGCGACACCAAAGCATCAAT
55479 ATCATTTATC
Statistics
Matches: 706, Mismatches: 75, Indels: 34
0.87 0.09 0.04
Matches are distributed among these distances:
948 7 0.01
949 116 0.16
950 21 0.03
951 440 0.62
952 46 0.07
953 75 0.11
954 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (948 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATTTGATGG
GAAAAATGCCTTGCGAAGCCAAAGCATCAATATCATGTATCCTAATGAAAACACTACGTTTATCC
TGCCTAATCCTGAAAAGATCGAGGATTAGTATGAGTATTAATGTTTGTCATATTTAAGAGACAAA
CTTTGACTCTATAAAAATGATGAAAAGAAAAGCTTTTCTTGCGACCCTAAAGCAGCAATGTCATG
TATCCTAATGAAGGGAATGTGTTGTTGGCTTCGCAGTCTTGAAAAGAATGGAGACTGATACAAGA
ATCGATGCTTGGCTTATTTAAGGCATGAACTTTGATGTAAAGGAAAATAGGGCAAAGAAAAGATT
CTCATGCAAAAGAAAATCATAAATATCATTTATCCCAACGAGGAGAATGTGTTTACAGTGCCTAA
TCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAGAC
TTTACAAAAATTGGTGGGAAAAATACCTTTCCTGCGAAACCAAAGCATCAATATCGTGTATCCTA
ATAAGAAGACGATGTTTATGGTGCCTAATCCTGAAAAGAATGGGCATCAGTATGAGTATACATGT
TTATCATATTTAAGAGACAAACTTTGATTCTATAAAAAACGGCGAAAAGAAAAACATTTCTCGCG
ACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGATTGTGCTTTTGGCTTCCTAGTCTTGAA
AAGAATGGAGACTATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTCATTTAAAGG
AAAATAGGGCAAAGAAATGATTTCCAAGTAAAAAAAAT
Found at i:55531 original size:317 final size:313
Alignment explanation
Indices: 55155--55817 Score: 877
Period size: 313 Copynumber: 2.1 Consensus size: 313
55145 AAAATAAAAT
* *
55155 CATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
55220 ATCGTTACTAGAATCCA-AGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
66 ATCATTACTAGAATCCATA-TTTGTCTCATTTGAGGCACGAACTTAGACTTCACAAAAATTGGTA
* * * * *
55284 GGAAAAATGCCTTTCTTGCAAACCCAAAGCATCAATAT-GATGTGTCCTAATCAGAAGACGATGT
130 GGAAAAATGCCTTGC--G-AAA-CCAAAGCATCAATATCG-TGTATCCTAATCAAAACACGACGT
* * * ** *
55348 TTATGGTGCCTAATCCTGAAAATAACTG-GGAGTAGTATGAGTATACATGTTTATCGTATTTAAG
190 TTATGCTGCCTAATCCTGAAAAGAAC-GAGAAGTAGTACAAGTATACATGTTTATCATATTTAAG
55412 AGACAAACTTTGATTCTATCAAAAACGGCGAAAAGAAAAACTTTTCTTGCGACACCAAAG
254 AGACAAACTTTGATTCTATCAAAAACGGCGAAAAGAAAAACTTTTCTTGCGACACCAAAG
*
55472 CATCAATATCATTTATCTTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
55537 ATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTCACGAAATTTGGTAG
66 ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTCACAAAAATTGGTAG
* * *
55602 GAAAAATGCCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTAAAACACTACGTTTATGC
131 GAAAAATGCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATCAAAACACGACGTTTATGC
** * * *
55667 TGCCTAATCCTGAAAAGGTCGAGAATTAGTACAAGTATTCATGTTTGTCATATTTAAGAGACAAA
196 TGCCTAATCCTGAAAAGAACGAGAAGTAGTACAAGTATACATGTTTATCATATTTAAGAGACAAA
* * * * * *
55732 CTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGACCCCAAAG
261 CTTTGATTCTATCAAAAACGGCGAAAAGAAAAACTTTTCTTGCGACACCAAAG
*
55785 CATCAATGTCATGTT-TCCTAATGAAGG-GAATGT
1 CATCAATATCAT-TTATCCTAATG-AGGAGAATGT
55818 GTTTTTGGCT
Statistics
Matches: 303, Mismatches: 38, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
312 1 0.00
313 161 0.53
314 9 0.03
315 1 0.00
317 130 0.43
318 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (313 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTCACAAAAATTGGTAG
GAAAAATGCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATCAAAACACGACGTTTATGC
TGCCTAATCCTGAAAAGAACGAGAAGTAGTACAAGTATACATGTTTATCATATTTAAGAGACAAA
CTTTGATTCTATCAAAAACGGCGAAAAGAAAAACTTTTCTTGCGACACCAAAG
Found at i:56041 original size:790 final size:791
Alignment explanation
Indices: 54680--56295 Score: 2142
Period size: 790 Copynumber: 2.0 Consensus size: 791
54670 TAAAAAAAAT
* * *
54680 CATCAATATCATTTATCCTGATGAGGAGAATGTGTTTACAGTGCCTAATCCCAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTATTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
54745 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACTAAAATTGATGG
66 ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTCACGAAAATTGATGG
* * * *
54810 AAAAATTGTCTTTCTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
131 AAAAATTGTC--TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAACACTACGTTT
* * * ** * *
54875 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGATTAATGTTTGTCGTTTTTAAGAGAC
194 ATGCTGCCTAATCCTGAAAAGAATGAGAATTAGTACAAGATTAATGTTTGTCATATTTAAGAGAC
* * *
54940 AAACTTTGACTCTATCAAATCGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAGCAATGTG
259 AAACTTTGACTCTATAAAATCGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCAGCAATGTC
* * *
55005 ATGTATCCTAATGAAGGGAATGTGTTGTTGGCTTCCTAGTCTTGAAAAGATTGGAGTCTGATGCA
324 ATGTATCCTAATGAAGGGAATGTGTTGTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGATACA
* * **
55070 AGAATCGATGCTTGGCTTATTTATGGCATGAACTTTGATGTAAAGGAAAGTAGGGCAAAGAAAGT
389 AGAATCGATGCTTGGCTTATTTAAGGCATGAACTTTGATGTAAAGGAAAATAGGGCAAAGAAAAC
* ** * *
55135 ATTTGCATGCAAAATAAAATCATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCC
454 ATTTGCATGCAAAAGAAAATCAGAAATATCATTTATCCCAACGAGGAGAATGTGTTTACAGTGCC
* * * * *
55200 TAATCACAAAATGAATGAAGATCGTTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTA
519 TAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTCTCTCATTTGAAGCACGAACATA
* *
55265 GACTTTACAAAAATTGGTGGGAAAA-ATGCCTTTCTTGC-AAACCCAAAGCATCAATAT-GATGT
584 GACTTTACAAAAATTGGTGAGAAAATA-ACCTTTCTTGCGAAA-CCAAAGCATCAATATCG-TGT
* * * * * *
55327 GTCCTAATCAGAAGACGATGTTTATGGTGCCTAATCCTGAAAATAACTGGG-AGTAGTATGAGTA
646 ATCCTAATCAGAAGACGATGTTTATGGTGCCCAATCCTAAAAAGAA-TGGGCAGTAGGATCAGTA
* *
55391 TACATGTTTATCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCG-AAAAGAAAAA-CT
710 TACATGTTTATCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGCAAAA-AAAAAGCA
*
55454 TTTCTTGCGACACCAAAG
774 TTTCTCGCGACACCAAAG
* *
55472 CATCAATATCATTTATCTTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTATTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
55537 ATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTCACGAAATTTGGTAG
66 ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTCACGAAAATTGAT-G
* * *
55602 GAAAAA-TG-C-CTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTAAAACACTACGTTTA
130 GAAAAATTGTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAACACTACGTTTA
* *
55664 TGCTGCCTAATCCTGAAAAG-GTCGAGAATTAGTACAAGTATTCATGTTTGTCATATTTAAGAGA
195 TGCTGCCTAATCCTGAAAAGAAT-GAGAATTAGTACAAG-ATTAATGTTTGTCATATTTAAGAGA
* * * * *
55728 CAAACTTTGATTCTATGAAAAAT-GGTGAAAAGAAAAGCTTTTCTTGTGACCCCAAAGCATCAAT
258 CAAACTTTGACTCTAT--AAAATCGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCAGCAAT
* * * *
55792 GTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTTGC-AGTCTTGAAAAGAATGGAGACTGT
321 GTCATGTATCCTAATGAAGGGAATGTGTTGTTGGC-TTCCTAGTCTTGAAAAGAATGGAGACTGA
* * * * *
55856 TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGA
385 TACAAGAATCGATGCTTGGCTTATTTAAGGCATGAACTTTGATGTAAAGGAAAATAGGGCAAAGA
* *
55921 AAACATTCT-CGTGCAAAAGAAAATCAGAAATATCATTTATCCTAACGAGGAGAATGTGTTTACA
450 AAACATT-TGCATGCAAAAGAAAATCAGAAATATCATTTATCCCAACGAGGAGAATGTGTTTACA
* * *
55985 GTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTTTCATTTGAAGCACGA
514 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTCTCTCATTTGAAGCACGA
* * *
56050 ACATAGACTTTACAAAAATTGGTGAGAAAATAACTTTTCTTGCGAAACTATAGCATCAATATCGT
579 ACATAGACTTTACAAAAATTGGTGAGAAAATAACCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * * * *
56115 GTATCTTAATGAGAAGACTATGTTTATGGTGCCCAATCCTAAAAAGGATGGGCATTAGGGTCTGT
644 GTATCCTAATCAGAAGACGATGTTTATGGTGCCCAATCCTAAAAAGAATGGGCAGTAGGATCAGT
* * * *
56180 ATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTCTATTAAAAACGGTGCAAAAAAAAAGCA
709 ATACATGTTTATCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGCAAAAAAAAAGCA
56245 TTTCTCGCGACACCAAAG
774 TTTCTCGCGACACCAAAG
* * * *
56263 CATCAATGTCATGTATCCTAATGAAGCGAATGT
1 CATCAATATCATTTATCCTAATGAGGAGAATGT
56296 GCTTTTGGCT
Statistics
Matches: 713, Mismatches: 98, Indels: 27
0.85 0.12 0.03
Matches are distributed among these distances:
787 1 0.00
788 76 0.11
789 41 0.06
790 407 0.57
791 64 0.09
792 117 0.16
793 7 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (791 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTATTTACAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTCACGAAAATTGATGG
AAAAATTGTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAACACTACGTTTAT
GCTGCCTAATCCTGAAAAGAATGAGAATTAGTACAAGATTAATGTTTGTCATATTTAAGAGACAA
ACTTTGACTCTATAAAATCGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCAGCAATGTCAT
GTATCCTAATGAAGGGAATGTGTTGTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGATACAAG
AATCGATGCTTGGCTTATTTAAGGCATGAACTTTGATGTAAAGGAAAATAGGGCAAAGAAAACAT
TTGCATGCAAAAGAAAATCAGAAATATCATTTATCCCAACGAGGAGAATGTGTTTACAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTCTCTCATTTGAAGCACGAACATAGA
CTTTACAAAAATTGGTGAGAAAATAACCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
AATCAGAAGACGATGTTTATGGTGCCCAATCCTAAAAAGAATGGGCAGTAGGATCAGTATACATG
TTTATCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGCAAAAAAAAAGCATTTCTCG
CGACACCAAAG
Found at i:56370 original size:478 final size:476
Alignment explanation
Indices: 55472--59826 Score: 5449
Period size: 477 Copynumber: 9.1 Consensus size: 476
55462 GACACCAAAG
* * *
55472 CATCAATATCATTTATCTTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * * * * *
55537 ATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTCACGAAATTTGGTAG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
** * * * *
55602 G-AAA-AA--TGCCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATTAAAACACTACGTTT
131 GAAAATAACCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * ***
55663 ATGCTGCCTAATCCTGAAAAGG-TCGAGAATTAGTACAAGTATTCATGTTTGTCATATTTAAGAG
196 ATGGTGCCTAATCCTGAAAAGGAT-G-GGATTAGGGTAAGTATTCATGTTTGTCATATTTAAGAG
* * * *
55727 ACAAACTTTGATTCTATGAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGACCCCAAAGCATCAAT
259 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* **
55792 GTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTTGCAGTCTTGAAAAGAATGGAGACTGTT
324 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT
55857 ACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAA
389 ACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAA
* *
55922 AACATTCTCGTGCAAAAGAAAAT
454 AAGATTCTCATGCAAAAGAAAAT
** * *
55945 CAGAAATATCATTTATCCTAACGAGGAGAATGTGTTTACAGTGTCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * * *
56010 ATCATTACTAGAATCCATGTTTCTTTCATTTGAAGCACGAACATAGACTTTACAAAAATTGGTGA
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
56075 GAAAATAACTTTTCTTGCGAAACTATAGCATCAATATCGTGTATCTTAATGAGAAGACTATGTTT
131 GAAAATAACCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * ** *
56140 ATGGTGCCCAATCCTAAAAAGGATGGGCATTAGGGTCTGTATTCATGTTTTTCATATTTAAGAGA
196 ATGGTGCCTAATCCTGAAAAGGATGGG-ATTAGGGTAAGTATTCATGTTTGTCATATTTAAGAGA
* * * *
56205 CAAACTTTGATTCTATTAAAAACGGTGCAAAAAAAAAGCATTTCTCGCGACACCAAAGCATCAAT
260 CAAACTTTGATTCTATCAAAAACGGTG-AAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * *
56270 GTCATGTATCCTAATGAAGCGAATGTGCTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGACTGTT
324 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTT
* * *
56335 A-GAAGAATCGATGCTTGCCTTATTTAAGCTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
389 ACG-AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGA
* *
56399 AAGGATT-TCCATGCAAAAAAAAAATT
453 AAAGATTCT-CATGC-AAAAGAAAA-T
*
56425 CATCAATATCACTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAAT--C--AATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
56486 ATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTTCTAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * *
56551 GAAAAT-GCCTTTCTTGCGTAACCAAAGCATCAATAT-GATGTATCCTAATGACAAGGCTATGTT
131 GAAAATAACCTTTCTTGCGAAACTAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTT
* * * * **
56614 TATGGTGTCTAATCCTGAAAAGAATAGGGATTAGTACGAGTATA-CATTACTTGTTTGTTGTATT
195 TATGGTGCCTAATCCTGAAAAGGAT-GGGATTAG---G-GTA-AGTATT-CATGTTTGTCATATT
* *
56678 T-AGAAGACAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGATACCAAAG
253 TAAG-AGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAG
* ** * * * * *
56742 CATCAATGTCATTTATCCCGATGGAGGGAAAG-GTTTTGGGCTTCCCAATCTTGAAAAGAAAGGA
317 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGA
* *
56806 GACTGTTACGAGAATCGATGCTTGTCGTATTTAAGGTATGAACTTTGATTTGAAGGAAAACAGGG
382 GACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGG
*
56871 CAAAGAAAAGATTC-CAACGCAAAAGAAAAT
447 CAAAGAAAAGATTCTC-ATGCAAAAGAAAAT
* * *
56901 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CT-ATCACAAATTGAATGAAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * * *
56964 ATCATTACTAGATTCTATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACGAAATTTGGTGA
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-
* * * * * * *
57029 GAAAAATGA-CTTTCTTGCGAAACTAAAGCA-CGAATATCGCGTATCGTAATTAAAAGACTACGT
130 GGAAAATAACCTTTCTTGCGAAACTAAAGCATC-AATATCGTGTATCCTAATGAGAAGACTATGT
* ** * *
57092 TTATGGTGCCTAATCCTGAAAAAGG-TGAGGATTTGTATGAGTATTCATGTTTGTCGTATTTAAG
194 TTATGGTGCCTAATCCTG-AAAAGGATG-GGATTAGGGTAAGTATTCATGTTTGTCATATTTAAG
* * * *
57156 AGACAAACTTGGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACCCCAAAGCATCA
257 AGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * *
57221 TTGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAAACTA
322 ATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTG
* * *
57286 TTATGAGAATCGATGCTTGCCTTATATAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAG
387 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAG
*
57351 AAAAGATTCTCACGCAAAAGAAAAT
452 AAAAGATTCTCATGCAAAAGAAAAT
* * * **
57376 CGTGAATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * **
57441 ATCATTACTAGAATCCATGTTTGTTTCATTTCG-GTCATGAACAAAGACTTTACAAAAATTGGTG
66 ATCATTACTAGAATCCATGTTTGTCTCATTT-GAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * *
57505 GGAAAAATTACCTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGACTATGT
130 GG-AAAATAACCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGT
* * * * * *
57570 TTACGGTGCCTAATTCTGAAAAGGATGGGCATCAGTGTGAGTATTATTCATGTTTTTCATATTTA
194 TTATGGTGCCTAATCCTGAAAAGGATGGG-ATTAGGGT-A--AGTATTCATGTTTGTCATATTTA
* * *
57635 AGA-AGCAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCATTTCTCGCGACACCAAAGCT
255 AGAGA-CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
57699 TCAATGTC----CTCCTAAGGAAGGGAATGTGCTTTTGGCTTCCTAGTCTTGAAAAGAATGGAGA
319 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGA
* * *
57760 CTGTTACAAGAATCGATGCTTGTCTTGTTTAAGGTATGAACTTTGATTTGAAGAAAAATAGGGCA
384 CTGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCA
*
57825 AAGAAAAGATTCCCATGCAAAAGAAAAT
449 AAGAAAAGATTCTCATGCAAAAGAAAAT
* * *
57853 CATCAATATCATCTATCCTAATGAGGAGAATGTGTTTACTGTGCCTAATCACAAAATGGATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
57918 ATCATTACTAGAATCCATGTTTGTTTCATTTGAGGCACAAACATAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * *
57983 GAAAA-ATACCTTTCTTGCAAAACCAAAGCATCAATGTCGTGTATCCTAATGGGAGGACTATGTT
131 GAAAATA-ACCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
* * * *
58047 TATGGTGCCTAATCTTGAAAAGGATGGGCATTAGTGTGAGTATTATTCATGTTTTTCATATTTAA
195 TATGGTGCCTAATCCTGAAAAGGATGGG-ATTAGGGT-A--AGTATTCATGTTTGTCATATTTAA
* * * ** * * * *
58112 GAGGCAAACTTTGATTCTGTAAAAAATAGTGAAAGGAAAAGCATTTCTCGCGACACCAAAGCTTC
256 GAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * ** * *
58177 AATGTCATGTATCCTACTGAAAGGAATGTACTTTTGGCTTCCTAGTCTTGAAAAGAATAGAGACT
321 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
* *
58242 GTTACAAGGATCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTGTAAGGAAAATAGGGCAA
386 GTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTG-AAGGAAAATAGGGCAA
* * *
58306 AGAAAAAATTCCCATGCAAAAGAAGAT
450 AGAAAAGATTCTCATGCAAAAGAAAAT
* * *
58333 CATCAATATCATTTATCCTAATGAGGAGAGTGTATTTACAGTGCCTAATCACAAAATGAATAAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* *
58398 ATCATTACTAGAATCCATGTTTG--T-A----AGGCACGAACTTTGACTTTA-AGAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
** * *
58455 GAAAA-ATGTCTTTCTTGCAAAACTACAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
131 GAAAATA-ACCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
* * * *
58519 TATGGTGCTTATTCCTGAAAAGAACAT-GGATTA--GTACGAGTATACATGTTTGTCATATTTAA
195 TATGGTGCCTAATCCTGAAAAG--GATGGGATTAGGGTA--AGTATTCATGTTTGTCATATTTAA
* * * * *
58581 AAGACAAATTTTGATTTTATCAGAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
256 GAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
58646 AATGTCATTTATCCCAATGAAGGGAAAGTGTTTTGGGCTTCCCAGTCTTGAAAAGAATGGAGGCT
321 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACT
* * * * *
58711 ATTACAAGAATCGATGCTTGCCTTATTTAAGGTATGAACTTTAATTTAAAGGAAAATAGGGCAAA
386 GTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAA
* * *
58776 GAAAGGATT-TCCAAGCAAAAAAAAAAAAT
451 GAAAAGATTCT-CATGC---AAAAGAAAAT
58805 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAAT-AATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * *
58869 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACTAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * *
58934 GAAAA-ATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTACGTT
131 GAAAATA-ACCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
* * ** * * *
58998 TATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTAATGTTTGTCATTTTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGGA-TGGGATTAGGGTAAGTATTCATGTTTGTCATATTTAAGAG
* *
59063 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAATAGCTTTTCTTGTGACACCAAAGCATCAAT
259 ACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
59128 GTCATTTATCCTAATAAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAATAAATGGAGACTAT
324 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAA-GAATGGAGACTGT
* * * * *
59193 TACGAGAATCAATGTTTGTCTTATTTAAGGTATGAACTTTAATTTGAAGGAAAATAAGGAAAAGA
388 TACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGA
59258 AAAGATTCTCATGCAAAAGAAAAT
453 AAAGATTCTCATGCAAAAGAAAAT
* *
59282 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCCAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
* * * *
59347 ATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAACTTAAACTTTACAAAATTTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * *
59412 GAAAAT-GCCTTTCTTGTGAAACTAAAGCATCAATATTGTCTATCCTAATTAAAAGACTATGTTT
131 GAAAATAACCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * ** * *
59476 ATGGTGCCTAATCCTGCAAAGGATGAAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGG
196 ATGGTGCCTAATCCTGAAAAGGATG-GGATTAGGGTAAGTATTCATGTTTGTCATATTTAAGAGA
* * * *
59541 CAAACTTTGATTCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTGTGACCCCAAAGCATTAATG
260 CAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * *
59606 TCATGTTTCCTAATGAAGGGAATGTGTTTTTGGGTTCCCAGTCTTGAAAAGAATGGATACTATTA
325 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTA
* *
59671 TGAGAATCAAAGATGCTTGTC-TATGTAAGGTATGAACTTTG-TTTGAAGGAAAATAGGGCAAAG
390 CGAGAATC---GATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAG
*
59734 AAAAGATTCCCATGCAAAAGAAAAT
452 AAAAGATTCTCATGCAAAAGAAAAT
** *
59759 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCTTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
59824 ATC
66 ATC
59827 GTTTTTCATT
Statistics
Matches: 3383, Mismatches: 415, Indels: 164
0.85 0.10 0.04
Matches are distributed among these distances:
469 197 0.06
470 4 0.00
471 29 0.01
472 154 0.05
473 132 0.04
474 103 0.03
475 237 0.07
476 328 0.10
477 853 0.25
478 503 0.15
479 375 0.11
480 384 0.11
481 84 0.02
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAATAACCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGGATGGGATTAGGGTAAGTATTCATGTTTGTCATATTTAAGAGAC
AAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
CATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGACTGTTAC
GAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTGAAGGAAAATAGGGCAAAGAAAA
GATTCTCATGCAAAAGAAAAT
Found at i:62431 original size:12 final size:12
Alignment explanation
Indices: 62414--62441 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
62404 TCTCTTCAAG
62414 AATTATACCCTA
1 AATTATACCCTA
62426 AATTATACCCTA
1 AATTATACCCTA
62438 AATT
1 AATT
62442 CTTAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (12 bp):
AATTATACCCTA
Found at i:67423 original size:3 final size:3
Alignment explanation
Indices: 67409--67443 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
67399 CGAGTCAACT
* *
67409 TCA TCA TTA TCA TCA TCA TCA TCA TCT TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
67444 TTTGATGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (3 bp):
TCA
Found at i:67443 original size:9 final size:9
Alignment explanation
Indices: 67407--67445 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
67397 TCCGAGTCAA
67407 CTTCATCAT
1 CTTCATCAT
67416 -TATCATCAT
1 CT-TCATCAT
*
67425 CATCATCAT
1 CTTCATCAT
67434 CTTCATCAT
1 CTTCATCAT
67443 CTT
1 CTT
67446 TGATGGTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
8 1 0.04
9 25 0.96
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.44
Consensus pattern (9 bp):
CTTCATCAT
Found at i:69039 original size:20 final size:20
Alignment explanation
Indices: 69014--69066 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
69004 ATTGGGCATA
** *
69014 ATGTATCGATACTTTTTACC
1 ATGTATCGATACAATGTACC
*
69034 ATGTATCGATACAATGTCCC
1 ATGTATCGATACAATGTACC
69054 ATGTATCGATACA
1 ATGTATCGATACA
69067 TTTCACTTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:69121 original size:20 final size:20
Alignment explanation
Indices: 69096--69185 Score: 84
Period size: 20 Copynumber: 4.7 Consensus size: 20
69086 TGCCAGTTTC
69096 ATGTATCGATACAAATGAGT
1 ATGTATCGATACAAATGAGT
* *
69116 ATGTATCGATAC-AATAAGC
1 ATGTATCGATACAAATGAGT
*
69135 ATGTATTGATAC-AAT--GT
1 ATGTATCGATACAAATGAGT
69152 ATTGTATCGATACAAA-GCA-T
1 A-TGTATCGATACAAATG-AGT
69172 AATGTATCGATACA
1 -ATGTATCGATACA
69186 TCTGGATGTG
Statistics
Matches: 59, Mismatches: 5, Indels: 12
0.78 0.07 0.16
Matches are distributed among these distances:
17 2 0.03
18 10 0.17
19 21 0.36
20 25 0.42
21 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAAATGAGT
Found at i:70992 original size:158 final size:159
Alignment explanation
Indices: 70299--71468 Score: 449
Period size: 159 Copynumber: 7.4 Consensus size: 159
70289 AAAAGCAAAA
* * * * * * *
70299 CATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAAT-CACAAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATCCTCAAAA-GAATGAA
* ** * * * * *
70363 GATCATAACT-AGAATTTATGTTTGTCTCTTTTGAGGCACAAACTTAGACTTTACAAAAATTGGT
65 GATCATTACTGAGAATCCATGTTTGTCTCATTTAAGTCACAACCTTAGACTTTAC-AAAATTGAT
* * * *
70427 -GAGAA-AAAAGCCTTTCTTGCAAAACCAAAG
129 GGA-AAGAAAAGCATTCCTTGCGAAACGAAAG
* * * * * * * * * **
70457 CATCAATATGATGTATTCGAACGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAACGGCG
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATCCTCAAAAGAATGAAG
* * * * * ** * * ** *
70522 ATTAGTA-TGAGTATTCATATTTGTCAT-ATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGG
66 ATCATTACTGAGAATCCATGTTTGTC-TCATTTAAGTCACAACCTTAGACTT-TA-CAAAATTGA
* * * *
70584 TGGAAAGAAAAGCTTTTCTTGC-AACCCCAAAG
128 TGGAAAGAAAAGCATTCCTTGCGAA-ACGAAAG
* * * * * * * * *
70616 CATCAATGTCATTTACCCTAATGA-AAGGAATGTGTTT-TGGCTTCCAAATCTTGAAAAGAATGA
1 CATCAATATCATGTATCCTAATGAGAA-GAATATATTTATGG-TGCCTAATCCTCAAAAGAATGA
* * * * * * * *
70679 AGA-CTATTA-TGAGAATCGAGGCTTGCCTTC-TTTAAAG-GATGAA-CTTTGATTTTA-AGGAA
64 AGATC-ATTACTGAGAATCCATGTTTGTC-TCATTT-AAGTCA-CAACCTTAGACTTTACA--AA
* * * * * * *
70738 AAT-AGGGCAAAGAAAAG-ATTTTCATGCAAAACAAAAT
123 ATTGATGG-AAAGAAAAGCA-TTCCTTGCGAAACGAAAG
* * * * * * *
70775 CATCAATATCATTTATCCTATTGAGGAGAATGTGTTTGTAGTGCCTAATCAC-CAAAAGAATGAA
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC-CTCAAAAGAATGAA
*
70839 GATCATTACT-AGAATCCATGTTTGTCTCATTTGAGTCACAACCTTAGACTTTACAAATATTGAT
65 GATCATTACTGAGAATCCATGTTTGTCTCATTTAAGTCACAACCTTAGACTTTACAAA-ATTGAT
**
70903 GGTTA-AAAAGCCATT-CTTGCGAAACGAAAG
129 GGAAAGAAAAG-CATTCCTTGCGAAACGAAAG
* * * * *
70933 CATCAATATCGTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAA-CAGG
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATCCTCAAAAGAATGAAG
* * * * * * * * ** * ** * * * *
70997 ATTA-GAATGAGTATTCTTGTTTATCTTATTTAAGAGATAAATTTTGA-TTCTATTAAAAGTGGT
66 ATCATTACTGAGAATCCATGTTTGTCTCATTTAAGTCACAACCTTAGACTT-TA-CAAAATTGAT
* *
71060 GGAAAGAAAAGCTTTCCTTGC-AACACCAAAG
129 GGAAAGAAAAGCATTCCTTGCGAA-ACGAAAG
* * * * * * * * * *
71091 CTTCAATGTCATGCATCCTAATGA-AGGGAATGTGTTT-TGGCTTCCAAATCTTGAAAAGAATGA
1 CATCAATATCATGTATCCTAATGAGA-AGAATATATTTATGG-TGCCTAATCCTCAAAAGAATGA
* * * * * * * *
71154 AGA-CTATTA-TGAGAATCGA-GACTTGCCTTATTTAAAG-GATGAA-CTTTGATTTTA-AGGAA
64 AGATC-ATTACTGAGAATCCATG-TTTGTCTCATTT-AAGTCA-CAACCTTAGACTTTACA--AA
* * * * * *
71213 AAT-AGGGCAAAGAAAAG-ATTTCCATGCAAAACAAAAT
123 ATTGATGG-AAAGAAAAGCA-TTCCTTGCGAAACGAAAG
* * * * * * * * *
71250 CATCAATATCATTTATCCTATTAAGGAGAATGTGTTTGTAGTGCCTAATCGC-CAAAAGAATTAA
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC-CTCAAAAGAATGAA
* *
71314 GATCATTACT-AAAATCCATGTTTGTCTCATTTGAGTCACAACCTTAGACTTTACAAATATTGAT
65 GATCATTACTGAGAATCCATGTTTGTCTCATTTAAGTCACAACCTTAGACTTTACAAA-ATTGAT
* *
71378 GGGAA-AAAAGCCATT-CTTGTGAAACGAAAG
129 GGAAAGAAAAG-CATTCCTTGCGAAACGAAAG
* *
71408 CATCAATATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAAT
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATCCTCAAAAGAAT
71469 AGGATTAGAA
Statistics
Matches: 747, Mismatches: 197, Indels: 136
0.69 0.18 0.13
Matches are distributed among these distances:
156 4 0.01
157 56 0.07
158 302 0.40
159 346 0.46
160 39 0.05
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (159 bp):
CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATCCTCAAAAGAATGAAG
ATCATTACTGAGAATCCATGTTTGTCTCATTTAAGTCACAACCTTAGACTTTACAAAATTGATGG
AAAGAAAAGCATTCCTTGCGAAACGAAAG
Found at i:71156 original size:475 final size:474
Alignment explanation
Indices: 70079--71633 Score: 2341
Period size: 475 Copynumber: 3.3 Consensus size: 474
70069 ATAATCACTA
* *
70079 AAGAGACAAACTTTGATTCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTGCAACACCAAAGCA
1 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
* * *
70144 TCAATATCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAAGAATG-AGAC
66 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGAAGAC
* ** * * * *
70208 TATTATGAGAATCGAAGCTTATCTGATTT-ATGGTATGATCTCTGATTTTAAGGAAAATAGGGCA
131 TATTATGAGAATCGAGGCTTGCCTTATTTAAAGG-ATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
70272 AA-AAAAGATTTTCATGCAAAAGCAAAA-CATCAATATCATTTATCCTAATGAGCAGAATGTGTT
195 AAGAAAAGATTTTCATGCAAAA-CAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTT
* * * ** * *
70335 TATAGTACCTAATCA-CAAAATGAATGAAGATCATAACTAGAATTTATGTTTGTCTCTTTTGAGG
259 TGTAGTGCCTAATCACCAAAA-GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGT
* * * * * *
70399 CACAAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
323 CACAACCTTAGACTTTACAAATATTGATG-GAAAAAAGCCATTCTTGCGAAACGAAAGCATCAAT
* * * * * * *
70464 AT-GATGTATTCGAACGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAACGGCGATTAGT
387 ATCG-TGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAACAG-GATTAGA
* * *
70528 ATGAGTATTCATATTTGTCATATTT
450 ATGAGTATTCTTGTTTGTCTTATTT
* *
70553 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCA
1 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
** * *
70618 TCAATGTCATTTACCCTAATGAAAGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGAAGAC
66 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGAAGAC
*
70683 TATTATGAGAATCGAGGCTTGCCTTCTTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
131 TATTATGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
70748 AGAAAAGATTTTCATGCAAAACAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTG
196 AGAAAAGATTTTCATGCAAAACAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTG
70813 TAGTGCCTAATCACCAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCAC
261 TAGTGCCTAATCACCAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCAC
*
70878 AACCTTAGACTTTACAAATATTGATGGTTAAAAAGCCATTCTTGCGAAACGAAAGCATCAATATC
326 AACCTTAGACTTTACAAATATTGATGG-AAAAAAGCCATTCTTGCGAAACGAAAGCATCAATATC
70943 GTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAACAGGATTAGAATGAG
390 GTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAACAGGATTAGAATGAG
*
71008 TATTCTTGTTTATCTTATTT
455 TATTCTTGTTTGTCTTATTT
* * * ** *
71028 AAGAGATAAATTTTGATTCTATTAAAAGTGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
1 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
71093 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGAAGAC
66 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGAAGAC
*
71158 TATTATGAGAATCGAGACTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
131 TATTATGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* *
71223 AGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTATTAAGGAGAATGTGTTTG
196 AGAAAAGATTTTCATGCAAAACAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTG
* * *
71288 TAGTGCCTAATCGCCAAAAGAATTAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGTCAC
261 TAGTGCCTAATCACCAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCAC
*
71353 AACCTTAGACTTTACAAATATTGATGGGAAAAAAGCCATTCTTGTGAAACGAAAGCATCAATATC
326 AACCTTAGACTTTACAAATATTGAT-GGAAAAAAGCCATTCTTGCGAAACGAAAGCATCAATATC
* * *
71418 ATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAATAGGATTAGAATGAG
390 GTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAACAGGATTAGAATGAG
71483 TATTCTTGTTTGTCTTATTT
455 TATTCTTGTTTGTCTTATTT
* * * *
71503 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
1 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
* * * * *
71568 TCAATGTCACGCATCCTAATGAAGGGAATGTATTTTCGTTTCTC-AATCTTGAAAAGAATGGAGA
66 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTC-CAAATCTTGAAAAGAATGAAGA
71632 CT
130 CT
71634 GTTACTGATG
Statistics
Matches: 998, Mismatches: 74, Indels: 17
0.92 0.07 0.02
Matches are distributed among these distances:
474 118 0.12
475 660 0.66
476 214 0.21
477 6 0.01
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (474 bp):
AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCA
TCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGAAGAC
TATTATGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
AGAAAAGATTTTCATGCAAAACAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTG
TAGTGCCTAATCACCAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCAC
AACCTTAGACTTTACAAATATTGATGGAAAAAAGCCATTCTTGCGAAACGAAAGCATCAATATCG
TGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAACAGGATTAGAATGAGT
ATTCTTGTTTGTCTTATTT
Found at i:71235 original size:159 final size:158
Alignment explanation
Indices: 70113--71286 Score: 527
Period size: 159 Copynumber: 7.4 Consensus size: 158
70103 AAAACGGTGT
* * * * *
70113 AAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTT
1 AAAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAAGGGAATGTGTT
* * ** * *
70178 T-TGGCTTCCTAATCTTGAAAAGAATG-AGACTATTATGAGAATCGAAGCTTATCTGATTTATG-
66 TATGG-TGCCAAATCTTGAAAAGAATGAAGACTATTATGAGAATCG-AGCTTGCCTTATTTAAGA
* *
70240 GTATGATCTCTGATTTTAAGGAAAATAGGGC
129 G-ATGAACTTTGATTTTAAGGAAAATAGGGC
* * *
70271 AAA-AAAAGATTTTCATGCAAAAGCAAAA-CATCAATATCATTTATCCTAATG-AGCAGAATGTG
1 AAAGAAAAGATTTCCTTGCAAAA-CAAAAGCATCAATATCATTTATCCTAATGAAG-GGAATGTG
* * * ** * ** * *
70333 TTTATAGTACCTAATC-ACAAAATGAATGAAGA-TCATAACT-AGAATTTATGTTTGTCTCT-TT
64 TTTATGGTGCCAAATCTTGAAAA-GAATGAAGACT-ATTA-TGAGAATCGA-GCTTGCCT-TATT
* ** * * *
70394 TGAG-GCACAAACTTAGACTTTACA--AAAATTGGTG-
124 TAAGAG-ATGAACTTTGATTTTA-AGGAAAATAGG-GC
* * * * * * * * * *
70428 AGAA-AAAAGCCTTT-CTTGCAAAACCAAAGCATCAATATGATGTATTCGAACG-AGAAGACTAT
1 A-AAGAAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAAG-GGAATGT
* * ** * * * ** * *
70490 GTTTATGGTGCCAAATCCTGAAAAGAACGGCGATTAGTATGAGTATTC-ATATTTGTCATATTTA
63 GTTTATGGTGCCAAATCTTGAAAAGAATGAAGACTATTATGAG-AATCGA-GCTTGCCTTATTTA
** * ** *
70554 AGAGACAAACTTTGATTCT-ATCAAAA-ACGGTGG
126 AGAGATGAACTTTGATTTTAAGGAAAATA-GG-GC
* * ** * * * *
70587 AAAGAAAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCATTTACCCTAATGAAAGGAATGTGTT
1 AAAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAAGGGAATGTGTT
* *
70652 T-TGGCTTCCAAATCTTGAAAAGAATGAAGACTATTATGAGAATCGAGGCTTGCCTTCTTTAA-A
66 TATGG-TGCCAAATCTTGAAAAGAATGAAGACTATTATGAGAATCGA-GCTTGCCTTATTTAAGA
70715 GGATGAACTTTGATTTTAAGGAAAATAGGGC
129 -GATGAACTTTGATTTTAAGGAAAATAGGGC
* * * *
70746 AAAGAAAAGATTTTCATGCAAAACAAAATCATCAATATCATTTATCCTATTG-AGGAGAATGTGT
1 AAAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAAGG-GAATGTGT
* * * *** * * * * *
70810 TTGTAGTGCCTAATCACCAAAAGAATGAAGA-TCATTACT-AGAATCCATGTTTGTCTCATTTGA
65 TTATGGTGCCAAATCTTGAAAAGAATGAAGACT-ATTA-TGAGAATCGA-GCTTGCCTTATTTAA
** * * * * *
70873 GTCA-CAACCTTAGACTTTACA--AATATTGATGG-
127 GAGATGAA-CTTTGATTTTA-AGGAA-AAT-AGGGC
** * * * * * * *
70905 TTA-AAAAGCCA-TT-CTTGCGAAACGAAAGCATCAATATCGTGTATCCTAATG-AGAAGACTAT
1 AAAGAAAAG--ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAAG-GGAATGT
* * * * * * ** * ** * **
70966 ATTTATGGTGCCTAATCCTGAAAAGAA-CAGGATTAGAATGAGTATTCTTGTTTATCTTATTTAA
63 GTTTATGGTGCCAAATCTTGAAAAGAATGAAGACTATTATGAG-AATCGAGCTTGCCTTATTTAA
* * * ** *
71030 GAGATAAATTTTGATTCT-ATTAAAAGT-GGTGG
127 GAGATGAACTTTGATTTTAAGGAAAA-TAGG-GC
* * * * * **
71062 AAAGAAAAGCTTTCCTTGCAACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTGTT
1 AAAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAAGGGAATGTGTT
*
71127 T-TGGCTTCCAAATCTTGAAAAGAATGAAGACTATTATGAGAATCGAGACTTGCCTTATTTAA-A
66 TATGG-TGCCAAATCTTGAAAAGAATGAAGACTATTATGAGAATCGAG-CTTGCCTTATTTAAGA
71190 GGATGAACTTTGATTTTAAGGAAAATAGGGC
129 -GATGAACTTTGATTTTAAGGAAAATAGGGC
* * *
71221 AAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCT-ATTAAGGAGAATGTGT
1 AAAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAAGG-GAATGTGT
71285 TT
65 TT
71287 GTAGTGCCTA
Statistics
Matches: 752, Mismatches: 200, Indels: 127
0.70 0.19 0.12
Matches are distributed among these distances:
155 2 0.00
156 10 0.01
157 113 0.15
158 298 0.40
159 305 0.41
160 23 0.03
161 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
AAAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAAGGGAATGTGTT
TATGGTGCCAAATCTTGAAAAGAATGAAGACTATTATGAGAATCGAGCTTGCCTTATTTAAGAGA
TGAACTTTGATTTTAAGGAAAATAGGGC
Found at i:71566 original size:158 final size:157
Alignment explanation
Indices: 70079--71589 Score: 724
Period size: 158 Copynumber: 9.5 Consensus size: 157
70069 ATAATCACTA
* * * * *
70079 AAGAGACAAACTTTGATTCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTGCAACACCAAAGCA
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGC-TTTCTTGCAAAACCAAAGCA
* * * *
70144 TCAATATCATGTATCCTAATGA-AGGGAATGTGTTT-TGGCTTCCTAATCTTGAAAAGAATGAGA
65 TCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATAAGA
* * * * * * *
70207 CTATTATGAG-AATCGAAGCTTATCTGATTT
128 TTATAATGAGTATTC-ATGTTTGTCTTATTT
* * * * * *** * * * * *
70237 ATG-GTATGATCTCTGATTTTAAGGAAAATAGG-GCAAA-AAAAGATTTTCATGCAAAAGCAAAA
1 AAGAG-ATAAACTTTGATTCTATTAAAAAT-GGTGGAAAGAAAAG-CTTTCTTGCAAAACCAAAG
* * * *
70299 CATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCAC--AAAATGAATGA
63 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAAT-A
* * *
70362 AGATCATAACT-AGAATTTATGTTTGTCTCT-TTT
125 AGATTATAA-TGAGTATTCATGTTTGTCT-TATTT
* * * *
70395 GAG-GCACAAACTTAGACTT-TA-CAAAAATTGGT-GAGAA-AAAAGCCTTTCTTGCAAAACCAA
1 AAGAG-ATAAACTTTGA-TTCTATTAAAAA-TGGTGGA-AAGAAAAG-CTTTCTTGCAAAACCAA
* * * * * * * **
70455 AGCATCAATATGATGTATTCGAACGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAACGG
61 AGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAA-TA
* * *
70520 CGATTAGT-ATGAGTATTCATATTTGTCATATTT
125 AGATTA-TAATGAGTATTCATGTTTGTCTTATTT
* * * **
70553 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCA
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGC-TTTCTTGCAAAACCAAAGCA
* * * * * *
70618 TCAATGTCATTTACCCTAATGA-AAGGAATGTGTTT-TGGCTTCCAAATCTTGAAAAGAATGAAG
65 TCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGG-TGCCTAATCCTGAAAAGAAT-AAG
* * * * * * *
70681 ACTATTATGAG-AATCGAGGCTTGCCTTCTTT
127 ATTATAATGAGTATTC-ATGTTTGTCTTATTT
* * *** * * * * *
70712 AA-AGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAACAAAAT
1 AAGA-GATAAACTTTGATTCTATTAAAAAT-GGTGGAAAGAAAAG-CTTTCTTGCAAAACCAAAG
* * * * * *
70775 CATCAATATCATTTATCCTATTGAGGAGAATGTGTTTGTAGTGCCTAATCAC-CAAAAGAATGAA
63 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTGAAAAGAAT-AA
* * * * *
70839 GATCATTACT-AGAATCCATGTTTGTCTCATTT
126 GATTA-TAATGAGTATTCATGTTTGTCTTATTT
* ** * * * * ** * * *
70871 GAGTCACAACCTTAGA--CT-TTACAAATATTGATGGTTA-AAAAGCCATTCTTGCGAAACGAAA
1 AAGAGATAAACTTTGATTCTATTA-AAA-A-TGGTGGAAAGAAAAG-CTTTCTTGCAAAACCAAA
* * * * * *
70932 GCATCAATATCGTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAACAGG
62 GCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAAG
* * *
70997 ATTAGAATGAGTATTCTTGTTTATCTTATTT
127 ATTATAATGAGTATTCATGTTTGTCTTATTT
* * * *
71028 AAGAGATAAATTTTGATTCTATTAAAAGTGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTT-CTTGCAAAACCAAAGCA
* * * * * *
71093 TCAATGTCATGCATCCTAATGA-AGGGAATGTGTTT-TGGCTTCCAAATCTTGAAAAGAATGAAG
65 TCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAAT-AAG
* * * * *
71156 ACTATTATGAG-AATCGA-GACTTGCCTTATTT
127 ATTATAATGAGTATTC-ATG-TTTGTCTTATTT
* * *** * * * * *
71187 AA-AGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAACAAAAT
1 AAGA-GATAAACTTTGATTCTATTAAAAAT-GGTGGAAAGAAAAGCTTT-CTTGCAAAACCAAAG
* * * * * * *
71250 CATCAATATCATTTATCCTATTAAGGAGAATGTGTTTGTAGTGCCTAATCGC-CAAAAGAATTAA
63 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTGAAAAGAA-TAA
* * ** * *
71314 GATCATTACT-AAAATCCATGTTTGTCTCATTT
126 GATTA-TAATGAGTATTCATGTTTGTCTTATTT
* ** * * * * * * ** *
71346 GAGTCACAACCTTAGA--CT-TTACAAATATTGATGGGAA-AAAAGCCATTCTTGTGAAACGAAA
1 AAGAGATAAACTTTGATTCTATTA-AAA-A-TGGTGGAAAGAAAAG-CTTTCTTGCAAAACCAAA
* * * * *
71407 GCATCAATATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAATAGG
62 GCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAAG
* *
71472 ATTAGAATGAGTATTCTTGTTTGTCTTATTT
127 ATTATAATGAGTATTCATGTTTGTCTTATTT
* *
71503 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCCTTGCAACACCAAAGCT
1 AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTT-CTTGCAAAACCAAAGCA
* * *
71568 TCAATGTCACGCATCCTAATGA
65 TCAATATCATGTATCCTAATGA
71590 AGGGAATGTA
Statistics
Matches: 975, Mismatches: 299, Indels: 158
0.68 0.21 0.11
Matches are distributed among these distances:
156 8 0.01
157 174 0.18
158 402 0.41
159 366 0.38
160 25 0.03
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (157 bp):
AAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTCTTGCAAAACCAAAGCAT
CAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATAAGATTA
TAATGAGTATTCATGTTTGTCTTATTT
Found at i:73279 original size:12 final size:11
Alignment explanation
Indices: 73260--73331 Score: 71
Period size: 12 Copynumber: 6.5 Consensus size: 11
73250 AGAGAAAGAA
73260 GAGATAGGAGG
1 GAGATAGGAGG
73271 GATGATAGGAGG
1 GA-GATAGGAGG
73283 AGAGATAGGA--
1 -GAGATAGGAGG
*
73293 GAGATAGTA--
1 GAGATAGGAGG
73302 GAGATAGGAGG
1 GAGATAGGAGG
73313 GATGATAGGAGG
1 GA-GATAGGAGG
73325 AGAGATA
1 -GAGATA
73332 ATAGAGAGAG
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
9 16 0.30
11 4 0.08
12 29 0.55
13 4 0.08
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:73294 original size:9 final size:9
Alignment explanation
Indices: 73280--73311 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
73270 GGATGATAGG
73280 AGGAGAGAT
1 AGGAGAGAT
73289 AGGAGAGAT
1 AGGAGAGAT
*
73298 AGTAGAGAT
1 AGGAGAGAT
73307 AGGAG
1 AGGAG
73312 GGATGATAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:73309 original size:42 final size:42
Alignment explanation
Indices: 73250--73331 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
73240 TAGCCCTCAA
73250 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* *
73292 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATA
1 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATA
73332 ATAGAGAGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (42 bp):
AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:73326 original size:33 final size:33
Alignment explanation
Indices: 73289--73359 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
73279 GAGGAGAGAT
* * * *
73289 AGGAGAGATAGTAGAGATAGGAGGGATGATAGG
1 AGGAGAGATAATAGAGAGAGGAGGGATAACAGG
73322 AGGAGAGATAATAGAGAGAGGAGGGATAACAGG
1 AGGAGAGATAATAGAGAGAGGAGGGATAACAGG
73355 AGGAG
1 AGGAG
73360 GAGAGAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.01, G:0.45, T:0.11
Consensus pattern (33 bp):
AGGAGAGATAATAGAGAGAGGAGGGATAACAGG
Found at i:73335 original size:15 final size:15
Alignment explanation
Indices: 73307--73360 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
73297 TAGTAGAGAT
*
73307 AGGAGGGATGATAGG
1 AGGAGGGATAATAGG
*
73322 AGGAGAGATAATAGAGAG
1 AGGAGGGATAAT--AG-G
*
73340 AGGAGGGATAACAGG
1 AGGAGGGATAATAGG
73355 AGGAGG
1 AGGAGG
73361 AGAGAAGAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 17 0.53
16 2 0.06
17 2 0.06
18 11 0.34
ACGTcount: A:0.41, C:0.02, G:0.48, T:0.09
Consensus pattern (15 bp):
AGGAGGGATAATAGG
Found at i:73350 original size:18 final size:18
Alignment explanation
Indices: 73283--73365 Score: 66
Period size: 18 Copynumber: 4.8 Consensus size: 18
73273 TGATAGGAGG
* *
73283 AGAGATAGGAGAGATAGT
1 AGAGAGAGGAGAGATAAT
* * *
73301 AGAGATAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
73319 --AG-GAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
73334 AGAGAGAGGAGGGATAAC
1 AGAGAGAGGAGAGATAAT
73352 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
73366 AGAAGATGGA
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
15 10 0.19
16 2 0.04
17 4 0.08
18 36 0.69
ACGTcount: A:0.43, C:0.01, G:0.45, T:0.11
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:80080 original size:475 final size:476
Alignment explanation
Indices: 78337--86705 Score: 10433
Period size: 476 Copynumber: 17.6 Consensus size: 476
78327 CATCAGTTAC
* * *
78337 GAGAATCGATGCTTG-CTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATA-AGTCAAAGAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGT-AAAGAAA
*
78400 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTG
65 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * * * *
78465 CCAAATCACCAAATGAATGAAGATTATTACTAGAATCCATATTTGACTCATTTAAGGCATGAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * *
78530 TAGACTTTACAAATATTGGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATGTCG-TC
195 TAGACTTTACAAAAATT-GGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATG
* * *
78594 TATCCTAATGGGAAAACTATGTTTATGGTG-CTCAATCCTGAAAAGAATGGGGATTAGTATGAGT
258 TATCCTAATGAGAAGACTATGTTTATGGTGCCT-AATCCTGAAAAGAACGGGGATTAGTATGAGT
* * * *
78658 ATTCATGTTTGTCTTATTTAAGAGACAAACTTGGATTCTTTTAAAAACGGTGGAAAGAAAAGCTT
322 ATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * ** **
78723 TTCTTGCGACACCAAAGCTTCAATGTCATGCAGCCTAATGAAGGGAATGTGTTTTAACTTTTCAA
387 TTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAA
* *
78788 ACTTGAAAAGAATGGAGACTGTTAT
452 TCTTGAAAAGAATGGAGACTATTAT
* * * * **
78813 GAGAATCAATGCTTGCCATATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGACAAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * **
78878 GAATTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGACAAGAATGTGTTTATAGTG-
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
78942 CTAAATCACCAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGAGGCACAAACT
131 CT-AATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* *
79007 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCGAAGCATCAATATGATGTA
195 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTA
* * *
79072 TCCTAATGAGAAGACTATGTATAATGGTGCCTAATCCTGAAATGAACAGGGATTAGTATGAGTAT
260 TCCTAATGAGAAGACTATGT-TTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTAT
* *
79137 TCAGGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTT
324 TCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * ** ** * * * * *
79202 CTTGCAACCCCAAAGCATCAATGTTGTTTACCCTAATGAAA-GGAACGCGTTTTTGCATCCAAAT
389 CTTACGACACCAAAGCATCAATGTCATGCATCCTAAT-AAAGGGAATGTGTTTTTGCTTCCCAAT
* * * * * *
79266 CATGAAAAAAATGGAGATTGTCAC
453 CTTGAAAAGAATGGAGACTATTAT
* * * * *
79290 GGGAATCGAGGCTAGGCCTTATTTAAAGGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAA
1 GAGAATCGATGCT-TGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAA
* * *
79355 AGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGCTTATAGTG
65 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * *
79420 CCTAATGACCAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGTCACGAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* ** * * *
79485 TAGACTTTATAAAAATTGGTACGAAAAAAACCTTTCCTGCGAAACCAAAGCATTAATATGATGTA
195 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTA
** *
79550 TCCTAATGAGAAGACTACATTTATGGTGCCTAATCCTGAAAAGAACGGAGATTAGTATGAGTATT
260 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATT
* * * *
79615 CAAGTTTGTCATATTTAATAGATAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTC
325 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * ** * * *
79680 TTATGACACCAAAGCATCAATTTCATATATCCTAATAAAGGGAAAGTGTGTTCGCTTCCCAATCT
390 TTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAATCT
* *
79745 TAAAAAGAATGGAGGCTATTAT
455 TGAAAAGAATGGAGACTATTAT
* ** * **
79767 GAGAATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACGTAAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * *
79832 GATTTCCACGCAAAATAAAATCATCAATATCATTTATCTTGAA-GAGGAGAACT-T-TTTATAGT
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAA-TGTGTTTATAGT
* * * * * * *
79894 ACCTATTCA-CATAATGAAAAAAGATCTTTATTAGAATCCATGTTTATCTCATTAGAGGCACGAA
129 GCCTAATCACCA-AATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* *
79958 CTTAGACTTTACAAAAATTGGTGTGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG-T
193 CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GAT
* * * *
80022 GTATCCTAATAAGAAGACTATGTTTATGG-GACCTAATCCT-AAAGAAAACGGTGATTAGTATCA
257 GTATCCTAATGAGAAGACTATGTTTATGGTG-CCTAATCCTGAAA-AGAACGGGGATTAGTATGA
* *
80085 GTATTCTTGTTTGTCATATTTAAGAGACAAACCTTT-ATTCTGTCAAAAACGGTGGAAAGAAAAG
320 GTATTCATGTTTGTCATATTTAAGAGACAAA-CTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* *
80149 CTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGC-TCT
384 CTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCC
*
80213 CAATCTTGAAAAGAATGGAGACTGTTAT
449 CAATCTTGAAAAGAATGGAGACTATTAT
* * *
80241 GAGAATCGATGCTTGCCTTATTTAAAGGAAGAACTTTGATTCTAAGAAAAATAGGGTAAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * * *
80306 GATTTCCATGCAGAATAAAATCATCAATATCATTTAGT-CTAATGAGCAGAATGTGTTTA-AGTA
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTA-TCCTAATGAGGAGAATGTGTTTATAGTG
* ** * * * * *
80369 CCTAATCACAAAATGAACGAAGATCTTTACTAAAATCAATGTTTGTCTCATTTAAGGCACGGACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * *
80434 TAAACTTTATAAAAGTTGG-GGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG-TGT
195 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGT
* * * *
80497 ATCCTAATAAGAAGACTATGTTTATGG-GACCTAATCTTGAAGAA-AACGGTGATTAGTATCAGT
259 ATCCTAATGAGAAGACTATGTTTATGGTG-CCTAATCCTGAA-AAGAACGGGGATTAGTATGAGT
* *
80560 ATTCTTGTTTGTCATATTTAAGAGACAAACCTTT-ATTCTGTCAAAAACGGTGGAAAGAAAAGCT
322 ATTCATGTTTGTCATATTTAAGAGACAAA-CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* *
80624 TTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCA
386 TTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCA
*
80689 ATCTTGAAAAGAATGGAGACTGTTAT
451 ATCTTGAAAAGAATGGAGACTATTAT
* * * *
80715 GAGAATCGATGCATGCCTTATTTAAAGGAAGAACTTTGATTCTAAGAAAAATAGGGTAAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * *
80780 GATTTCCATGCAAAATAAAATCATCAATATCATTTAGT-CTAATGAGCAGAATGTGTTTA-AGTA
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTA-TCCTAATGAGGAGAATGTGTTTATAGTG
* ** * * * * *
80843 CCTAATCACAAAATGAACGAAGATCTTTACTAGAATCAAAGTTTGTCTCATTTAAGGTACGAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * *
80908 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACAAAAGCATCATTATGATGCA
195 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTA
* * * * * *
80973 TTCGAATGAGAAGACTACGCTTATGGTGCCTAATCTTGAAAAGAACGGGGACTAGTATGAGTATT
260 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATT
81038 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
325 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * ** * ** * * * *
81103 TTGCAACCCCAAAGCATCAATGTCATTTACCCTAACGAAGGGAATGTGTTTTGGCATCCAAATCA
390 TTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAATCT
* * *
81168 TGAAAAGAATGTAGA-TCGTTAC
455 TGAAAAGAATGGAGACT-ATTAT
* * * * * *
81190 GAGAATCAAGGCTTGCCTTATTTAAAAGATGAGCTTAGATTTTAAGGAAAATAGGGCAAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* *
81255 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGC
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
81320 CTAATGACCAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCATGAACTT
131 CTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * *
81385 AGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCCTGAGAAGCCAAAGCATCAATATGATGTAT
196 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
* *
81450 CCTAATGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC
261 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTC
* * * *
81515 ATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCC
326 ATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * *
81580 TATGACACCAAAGCATCAATTTCATGGATCCTAATAAAGGGAATGTGTGTTCGCTTCCCAATCTA
391 TACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAATCTT
* *
81645 AAAAAGAATGGAGGCTATTAT
456 GAAAAGAATGGAGACTATTAT
* * ** * ** *
81666 GTGAATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACGTGAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * * *
81731 GATTTCCACGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTGTAGTA
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTG
* * * * * * * *
81794 CCTAATCACAAAATGAAAAAAGATCTTTTCTAGAATCCATGTTTATCTCGTTAGAGGCATGAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * *
81859 TAGAGTTTACAAAAATTGGTGTGAAAAAAAGCCTTTCTTGTGAAACCAAAGCTTCAATATAATGT
195 TAGACTTTACAAAAATTGGTG-GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGT
* * * * *
81924 A---T--T--GAAGACTATGTTTATGATGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGT
259 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTAT
** * * * *
81982 TTGTGTTTGACTTATTTAAGAGCCAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTT
324 TCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
*
82047 CTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAA-GGAATGTGTTTTTGCTTCTCAAT
389 CTTACGACACCAAAGCATCAATGTCATGCATCCTAAT-AAAGGGAATGTGTTTTTGCTTCCCAAT
*
82111 CTTGAAAAGAATGGAGACTATTAA
453 CTTGAAAAGAATGGAGACTATTAT
* * * *
82135 GAGAATCGATGCTTTCCATATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGCCT-AAGAGA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGG-GTAAAGAAA
* *
82199 AGATTTCCATGCAAAAGAAAATCATCAATATCGTTCATCCTAATGAGGAGAATGTGTTTATAGTG
65 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
82264 CCAAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACAAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * *
82329 TAGACTTTACGAAAATTGGTAGGAAAAAAGCCTTTCCTGTGAAACCAAAGCATCAATATGATGTA
195 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTA
*** * * *
82394 TCCTAATGAGAAGACTGCATTTGTGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATT
260 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATT
* * * ** *
82459 CATGTTTGTCATTTTTAAGAGATAAACTTTGATTTTAT-TTAAATGGTGGAAAGAAAAGCTTTTC
325 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * * *
82523 TTACAACACCAAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCGATTCCCAATCT
390 TTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAATCT
* *
82588 TAAAAAGAAT-GAGGGCTATTAT
455 TGAAAAGAATGGA-GACTATTAT
* ** * **
82610 GAGAATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACGTAAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * * *
82675 GATTTCCATGCAAAATAAAATCATCAATATCATTTATCTTGAA-GAGGAGAA-CTGTTTATAGTA
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTG
* ** * * * * * *
82738 CCTATTCAAAAAATGAAAAAAGATCTTTACTAGAATCCATATGTATCTCATTAGAGGCACGAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* *
82803 TAGACTTTACAAAAATTGG-GGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATAAT
195 TAGACTTTACAAAAATTGGTGG-G--AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAT
* * * * *
82867 GTATCCTAATAAGAAGACTATGTTTATGATGCCTAATCCTGAAATGAATGGGGATTAGTATAAGT
257 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGT
* * * *
82932 GTTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGGTGGAAAGAAAAGCTT
322 ATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * *
82997 TTCTTATGACGCCAAAGCATCAATGTCATGCATCCTAATGAAA-GGAATGTGTTTTTGCTTCTCA
387 TTCTTACGACACCAAAGCATCAATGTCATGCATCCTAAT-AAAGGGAATGTGTTTTTGCTTCCCA
*
83061 ATCTTGAAAAGAATGGAGACTATTAA
451 ATCTTGAAAAGAATGGAGACTATTAT
* * *
83087 GAGAATCGATGCTTGCCATATTTAAAGGTTGAACTTTGATTTTAAGGAAAATAGGGCT-AAGAGA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGG-TAAAGAAA
* * *
83151 AGATTTCCATGCAAAAGAAAATCATCAATATCGTTCATCCTAATGAGGAGAATGTGTTTATACTG
65 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
83216 CCAAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACAAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * *
83281 TAGACTTTACGAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAACATGATGTA
195 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTA
* ** * * * *
83346 TCATAATGAGAAGACTGCGTTTGTGGCGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATT
260 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATT
* * * * * * * *
83411 CATGTTTTTCGTTTTTAAGAGATAAACTTTGATTTTATCGAAAACAGTGGAAAGAAAAACTTTTC
325 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * * * * *
83476 TTATGACACCAAAGAATCCATTTCACGTATCCTAATAAAGTGAATGTGTGTTCGATTCCCAATCT
390 TTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAATCT
* *
83541 T-AAAAGGAATGGGGGCTATTAT
455 TGAAAA-GAATGGAGACTATTAT
* ** * **
83563 GAGAATCGAAGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACGTAAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* *
83628 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGT
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * * *
83693 CTAATGACCAAAAGAATGAATATCACTACTAGAATCCATGTTTGTCTCATTTGAGTCATGAACTT
131 CTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * *
83758 AGACTTCAAAAAAATTGGTAGGAAAAAAGCCTTTCCTACGAAACCAAAGCGTCAATATGATGTAT
196 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
* * *
83823 CCTAATGAGGAGACTACG-TTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTTTGAGTATTC
261 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTC
*
83887 ATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
326 ATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
83952 TACGACACCAAAGCATCAATGTCATGCATCCTAATGAAA-GGAATGTGTTTTTGCTTCTCAATAT
391 TACGACACCAAAGCATCAATGTCATGCATCCTAAT-AAAGGGAATGTGTTTTTGCTTCCCAATCT
*
84016 TGAAAAGAATGGAGACTATTAA
455 TGAAAAGAATGGAGACTATTAT
* * *
84038 GAGAATCGATGCTTGCCATATTTAAAGGATGAACTTTGATTTTCAGGAAAATAGGGCT-AAGAGA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGG-TAAAGAAA
* * *
84102 AGATTTCCATGCAAAAAAAAATCATCAATATCGTTCATCCTAATGAGGAGAATGTGTTTATAGTG
65 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
84167 CCAAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGTCACAAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * *
84232 TAGACTTTACGAAAATTGGTAGGAAAAAAGCCTTTCCTGTGAAACCAAAGCATCAATATGATGTA
195 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTA
*** * * * *
84297 TCCTAATGAGAAGACTGCATTTGTGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGAATT
260 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATT
* * * * * **
84362 CATGTTTGTCGTTTTTAAAAGATAAACTTTGATTTTATGGAAAACGGTGGAAAGAAAAGCTTTTC
325 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * * * *
84427 TTATGACACCAAAGCATCAATTTCATGTATTCTAAAAAAGTGAATGTGTGTTCGATTCCCAATCT
390 TTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAATCT
* *
84492 T-AAAAGGAATGGGGGCTATTAT
455 TGAAAA-GAATGGAGACTATTAT
* * ***
84514 GAGAATCGAAGCTTG-GTTAGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACATAAAGAAA
1 GAGAATCGATGCTTGCCTTA-TTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAA
*
84578 AGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTATAGT
65 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGT
* * ** * * * * * *
84641 ACCTATTCAAAAAATGAAAAAAGATCTTTACTAGAATCCATATGTATCTCATTAGAGGCACGAAC
129 GCCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * *
84706 TTAGACTTTACAAAAATTGGTGTGAAAAAAAACTTTTCTTGCGAAACCAAAGCATCAATATGATG
194 TTAGACTTTACAAAAATTGGTG-GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
* * * * * *
84771 TATCCTAATAAGAAGACTATGTTGACGCTGTCTAATCCTAAAAAGAACGGGGATTAGTATGAGTA
258 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTA
* *
84836 TTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTT
323 TTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTT
* *
84901 TTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTTGCTTCCCA
387 TTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTG-TTTTTGCTTCCCA
* * *
84966 ATCTTAAAAAGAATGGAGACTATAAC
451 ATCTTGAAAAGAATGGAGACTATTAT
* * *
84992 GAGAATCGATGCTTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAAGGCT-AAGAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAAT-AGGGTAAAGAAA
* *
85056 AGATTTCCATTGTAAAAGAAAATCATCAATAACATTTATCCTAATGAGGAGAATGTGTTTATAGT
65 AGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * *
85121 GCCAAATCACTAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGCCGCGAAT
129 GCCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * * * *
85186 TTAGACTTTATAAAAATTGG-GGCGAAGAAAGCCTTCCTTGTGAAACCAAAGCATCAATGTCG-T
194 TTAGACTTTACAAAAATTGGTGG-GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GAT
* * * * ** * *
85249 GTAACCTAAT-AGGAAGACTACGTTTATGGTACTTAATCCTGAAAA-AA-AAGGATTATTATCAG
257 GTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAG
* * * * *
85311 TATTCTTGTTTGTCGTATTTAAGAGACAAATTTTGATTCTGTCAAAAATGGTGGAAAGAAAAGCT
321 TATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * *
85376 TTTCTTACGACACCAAAGCATCAATGTCTTGCATCCTAATAAAAGGAATATGTTTTTGCTTCTCA
386 TTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCA
*
85441 ATCTTGAAAAG-ATGGAGACTGTTAT
451 ATCTTGAAAAGAATGGAGACTATTAT
* * *
85466 GAGAATTGATGCTCGCCTTATTTAAAGGATGAACTTTAATTTTAA-GAAAACTAGGGTAAAGAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAA-TAGGGTAAAGAAA
* * * * * * *
85530 AGATTTCCATGCAAAATAATATCATCAATATCGTTTATCCTAATGAGCAGATTGTGTTTGTAGTA
65 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
** * * *
85595 CCTAATCAGAAAATGAACAAAGATCTTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* *
85660 TAGACTTTACAAAAATGGGTGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
195 TAGACTTTACAAAAATTGGTG-G-GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
* * * * * *
85725 TATCCTAATAAGAAGACTAAGTTTATGCTGCCTAATCCTAAAAAGAACGGGGATTAGTATAAGTT
258 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTA
* *
85790 TTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
323 TTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
* * * *
85855 TCTTACGACACCAAAGCATCAATGTCATGTAGCCTAATGAAGGGAATGTGTTTTCGCTTCCCAAT
388 TCTTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAAT
* * *
85920 GTT-AAAAAAATGGAGACTATTAC
453 CTTGAAAAGAATGGAGACTATTAT
* * * *
85943 GAGAATCGATGCTTGCCATATTTAAAAGATGAACTTTGGTTTTAAGGAAAGTAGGGCT-AAGAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGG-TAAAGAAA
* * *
86007 AGATTTCCCTACAAAAGAAAATCATCAATATCATTCATCCTAATGAGGAGAATGTGTTTATAGTG
65 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
86072 CCAAATCACCAAATGTATAAAGATCATCACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
130 CCTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * *
86137 TAGACTTTATAAAAGTTGGGGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG-TGT
195 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGT
* * * * *
86201 ATCCTAATAAGAAGACTATGTTTATGGTACCTAATCCTGAAGAA-AACAGGGATTAGTATCAATA
259 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA-AAGAACGGGGATTAGTATGAGTA
* * * *
86265 TTC-TAGTTTGTCGTATTTAAGAGACAAACCTTCATTCTGTCAAAAACGGTGGAAAGAAAAGCTT
323 TTCAT-GTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * * *
86329 TTCTTACGGCACCAAAGCGTCAAGGTCACGCATCCTAATGAGGGGAATGTGTTTTTGCTTCTCAA
387 TTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAA
* * *
86394 TCTTGAGAAGAATTGAGACTGTTAT
452 TCTTGAAAAGAATGGAGACTATTAT
* * * *
86419 AAGAATCAATGCTTGCCTTATTTAAAGGATAAACTTTGATTTTAAGAAAAATAGGGTAAAGAAAA
1 GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * *
86484 GATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGTAGAATGTGTTTATAGTAC
66 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * * *
86549 CTAATCACAAAATGAATGAAGATCTTTACTAGAATCCTTGTTTGTCCCATTTGAGGTACAAACTT
131 CTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* *
86614 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATGTAT
196 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
*
86679 -TTGAATGAGAAGACTATGTTTATGGTG
261 CCT-AATGAGAAGACTATGTTTATGGTG
86706 TCTACATGTT
Statistics
Matches: 6826, Mismatches: 964, Indels: 206
0.85 0.12 0.03
Matches are distributed among these distances:
468 2 0.00
469 318 0.05
470 85 0.01
471 1 0.00
472 1 0.00
473 355 0.05
474 609 0.09
475 1683 0.25
476 2004 0.29
477 1149 0.17
478 423 0.06
479 115 0.02
480 81 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (476 bp):
GAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
CTAATCACCAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTC
ATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
TACGACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGCTTCCCAATCTT
GAAAAGAATGGAGACTATTAT
Found at i:84917 original size:160 final size:160
Alignment explanation
Indices: 78556--85892 Score: 859
Period size: 159 Copynumber: 46.3 Consensus size: 160
78546 TGGGGGGGAA
* * * * * **
78556 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATGTCGTCTATCCTAATGGGAA-AACTATGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAA-TATGTTTAT
* * * * *
78620 GGTG-CTCAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
65 GCTGTCT-AATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
* * * * *
78684 AAACTTGGATTCTTTTAAAAACGGTGG-AAAG
129 GAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * * *
78715 AAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCATGCAGCCTAATGAAG-GGAATGTGTTT-T
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT
* * * * * * * * * * * *
78778 AACT-TTTCAAACTTGAAAAGAATGGAGACT-GTTATGAG-AATCAATGCTTGCCATATTTAAGG
65 -GCTGTCT-AATCCTAAAAAGAACGGAGATTAG-TATGAGTATTC-ATGTTTGTCGTATTTAAGA
* * ** *
78840 GATGAACTTTGATTTTAAGAAAAAT--AGGACAAAG
126 GACGAACTTTGATTCTATCAAAAATGGTGGA-AAAG
** * * * ** * * * * * *
78874 AAAAGAATTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGACAAGAATGTGTTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-
* * * * * * * * * *
78939 G-TG-CTAAATCAC-CAAATGAATGAAGATCATTCCT-AGAATCCATGTTTGTC-TCATTTGAG-
65 GCTGTCT-AATC-CTAAAAAGAACGGAGATTAGT-ATGAGTATTCATGTTTGTCGT-ATTTAAGA
* * *
78998 GCACAAACTTAGACTT-TA-CAAAAATTGGTGG-GAA-
126 G-ACGAACTTTGA-TTCTATCAAAAA-TGGTGGAAAAG
* * * * * * *
79032 AAAAGCCTTTCTTGTGAAACCGAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTATAAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGT-TTAT
* * * * * *
79097 GGTGCCTAATCCTGAAATGAACAGG-GATTAGTATGAGTATTCAGGTTTGTCATATTTAAGAGAC
65 GCTGTCTAATCCTAAAAAGAAC-GGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
* *
79161 AAACTTTGATTCTATCAAAAACGGT-GAAAAG
129 GAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * ** * * * *** *
79192 AAAAGCTTTTCTTGC-AACCCCAAAGCATCAATGTTGTTTACCCTAATGAA-AGGAACGCGTTTT
1 AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTA
* * * * * * * * ** * *
79255 TGCAT-CCAAATCATGAAAAA-AATGGAGATT-GTCACG-GGAATCGAGGCTAGGCCTTATTTAA
64 TGC-TGTCTAATCCT-AAAAAGAACGGAGATTAGT-ATGAGTATTC-ATG-TTTGTCGTATTTAA
* * * *** * *
79316 -AGGATGAGCTTTGATTTTAAGGAAAATAG-GGCAAAG
124 GA-GACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * ** * * * * * * *
79352 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-
* * * * * * *
79417 G-TGCCTAATGACC--AAAAGAATGAAGATCATTACT-AG-AATCTATGTTTGTC-TCATTTGAG
65 GCTGTCTAAT--CCTAAAAAGAACGGAGATTAGTA-TGAGTATTC-ATGTTTGTCGT-ATTTAAG
** * *
79476 TCACGAACTTAGACTT-TAT-AAAAATTGGTACG-AAA-
125 AGACGAACTTTGA-TTCTATCAAAAA-TGGT-GGAAAAG
* * * * * * **
79511 AAAA-CCTTTCCTGCGAAACCAAAGCATTAATATGATGTATCCTAATGAGAAGACTACATTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * * **
79575 GTGCCTAATCCTGAAAAGAACGGAGATTAGTATGAGTATTCAAGTTTGTCATATTTAATAGATAA
66 CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
* *
79640 ACTTTGATTCTATAAAAAACGGTGG-AAAG
131 ACTTTGATTCTATCAAAAATGGTGGAAAAG
** * * * *
79669 AAAAGCTTTTCTTATGACACCAAAGCATCAATTTCATATATCCTAATAA-AGGGAA-AGTGTGTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGA-AGAATA-TGT-TT
* * * * ** * * * * * *
79732 -CGCT-TCCCAATCTTAAAAAGAATGGAGGCTATTATGAG-AATCGAAGCTTGGT-TTGTTTAA-
63 ATGCTGT-CTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTC-ATG-TTTGTCGTATTTAAG
* * *** *** *
79792 AGGATGAACTTTGATTTTAAGGAAAAT-AACGTAAAG
125 A-GACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * ** * ** * * * * *
79828 AAAAGATTTCCACGCAAAATAAAATCATCAATATCATTTATCTTGAA-GAGGAGAACT-T-TTTA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATAAGAAGAA-TATGTTTA
** * * * *** * * * * *
79890 TAG-TACCTATTCAC-ATAATGAAAAAAGATCT-TTATTAGAATCCATGTTTATC-TCA-TT-AG
64 T-GCTGTCTAATC-CTAAAAAGAACGGAGAT-TAGTATGAGTATTCATGTTTGTCGT-ATTTAAG
*
79949 AGGCACGAACTTAGACTT-TA-CAAAAATTGGTGTG--AA-
125 A-G-ACGAACTTTGA-TTCTATCAAAAA-TGGTG-GAAAAG
* * * *
79985 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * *
80050 -GGACCTAATCCTAAAGAA-AACGGTGATTAGTATCAGTATTCTTGTTTGTCATATTTAAGAGAC
66 CTG-TCTAATCCTAAA-AAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
* * *
80113 AAACCTTT-ATTCTGTCAAAAACGGTGG-AAAG
129 GAA-CTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * * *
80144 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAG-GGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT
* * * * * * * * *
80208 GCTCTC-AATCTTGAAAAGAATGGAGACT-GTTATGAG-AATCGATGCTTGCCTTATTTAA-AGG
65 GCTGTCTAATCCTAAAAAGAACGGAGATTAG-TATGAGTATTC-ATGTTTGTCGTATTTAAGA-G
* ** * *
80269 AAGAACTTTGATTCTAAGAAAAATAG-GGTAAAG
127 ACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * * * *
80302 AAAAGATTTCCATGCAGAATA--AAATCATCAATATCATTTAGT-CTAATGAGCAGAATGTGTTT
1 AAAAGCTTTTCTTGC-GAA-ACCAAAGCATCAATATCATGTA-TCCTAATAAGAAGAATATGTTT
* ** * * * * *
80364 AAG-TACCTAATCAC-AAAATGAACGAAGATCT-TTACT-A-AAATCAATGTTTGTC-TCATTTA
63 ATGCTGTCTAATC-CTAAAAAGAACGGAGAT-TAGTA-TGAGTATTC-ATGTTTGTCGT-ATTTA
* ** * **
80423 AG-GCACGGACTTAAACTT-TAT-AAAAGTTGG-GG-GGA-
123 AGAG-ACGAACTTTGA-TTCTATCAAAA-ATGGTGGAAAAG
* * * *
80458 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * * * *
80523 -GGACCTAATCTTGAAGAA-AACGGTGATTAGTATCAGTATTCTTGTTTGTCATATTTAAGAGAC
66 CTG-TCTAATCCT-AAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
* * *
80586 AAACCTTT-ATTCTGTCAAAAACGGTGG-AAAG
129 GAA-CTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * * *
80617 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAG-GGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT
* * * * * ** * *
80681 GCT-TCTCAATCTTGAAAAGAATGGAGACT-GTTATGAG-AATCGATGCATGCCTTATTTAA-AG
65 GCTGTCT-AATCCTAAAAAGAACGGAGATTAG-TATGAGTATTC-ATGTTTGTCGTATTTAAGA-
* ** * *
80742 GAAGAACTTTGATTCTAAGAAAAATAG-GGTAAAG
126 GACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * ** * * * * * *
80776 AAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTAGT-CTAATGAGCAGAATGTGTTTAA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTA-TCCTAATAAGAAGAATATGTTTAT
** * * * * *
80840 G-TACCTAATCAC-AAAATGAACGAAGATCT-TTACT-AG-AATCAAAGTTTGTC-TCATTTAAG
65 GCTGTCTAATC-CTAAAAAGAACGGAGAT-TAGTA-TGAGTATTC-ATGTTTGTCGT-ATTTAAG
* *
80899 -GTACGAACTTAGACTT-TA-CAAAAATTGGTGG-GAA-
125 AG-ACGAACTTTGA-TTCTATCAAAAA-TGGTGGAAAAG
* * * * * * * * * * * *
80933 AAAAGCCTTTCTTGCAAAACAAAAGCATCATTATGATGCATTCGAATGAGAAGACTACGCTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * * * *
80998 GTGCCTAATCTTGAAAAGAACGGGGACTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAA
66 CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
*
81063 ACTTTGATTCTATCAAAAACGGTGG-AAAG
131 ACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * * *
81092 AAAAGCTTTTCTTGC-AACCCCAAAGCATCAATGTCATTTACCCTAACGAAG-GGAATGTGTTT-
1 AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAA-TAAGAAGAATATGTTTA
* * * * * * * * * * * * * *
81154 TGGCAT-CCAAATCATGAAAAGAATGTAGA-TCGTTACGAG-AATCAAGGCTTGCCTTATTTAAA
64 T-GC-TGTCTAATCCTAAAAAGAACGGAGATTAG-TATGAGTATTC-ATGTTTGTCGTATTTAAG
* * * * *** * *
81216 AGATGAGCTTAGATTTTAAGGAAAATAG-GGCAAAG
125 AGACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * ** * * * * * *
81251 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-
* * * * * * * * *
81316 G-TGCCTAATGACC--AAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTC-TCATTTGAGT
65 GCTGTCTAAT--CCTAAAAAGAACGGAGATTAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAGA
* * *
81376 CATGAACTTAGACTT-TA-CAAAAATTGGTAGG--AA-
126 GACGAACTTTGA-TTCTATCAAAAA-TGGT-GGAAAAG
* * * * * * * *
81409 AAAAGCCTTTCCTGAGAAGCCAAAGCATCAATATGATGTATCCTAATGAGAAGACTACGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * *
81474 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAA
66 CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
*
81539 ACTTTGATTCTATAAAAAATGGTGG-AAAG
131 ACTTTGATTCTATCAAAAATGGTGGAAAAG
* ** * * * * *
81568 AAAAGCTTTTCCTATGACACCAAAGCATCAATTTCATGGATCCTAATAA-AGGGAATGTGTGTT-
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGA-AGAATATGT-TTA
* * * ** * * * * * * *
81631 CGCT-TCCCAAT-CTAAAAAAGAATGGAGGCTATTATGTG-AATCGAAGCTTGGT-TTGTTTAA-
64 TGCTGT-CTAATCCT-AAAAAGAACGGAGATTAGTATGAGTATTC-ATG-TTTGTCGTATTTAAG
* * ** **
81691 AGGATGAACTTTGATTTTAAGGAAAATAACGT-G--AAG
125 A-GACGAACTTTGATTCT-ATCAAAA-ATGGTGGAAAAG
* * ** * ** * * * * *
81727 AAAAGATTTCCACGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTGT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATAAGAAGAATATGTTTAT
** * *** ** * * * * **
81790 AG-TACCTAATCAC-AAAATGAAAAAAGATCTTTTCT-AGAATCCATGTTTATC-TCGTT-AGAG
65 -GCTGTCTAATC-CTAAAAAGAACGGAGAT-TAGTATGAGTATTCATGTTTGTCGTATTTAAGA-
* *
81850 GCATGAACTTAGAGTT-TA-CAAAAATTGGTGTG-AAA-
126 G-ACGAACTTTGA-TTCTATCAAAAA-TGGTG-GAAAAG
* * * * *
81885 AAAAGCCTTTCTTGTGAAACCAAAGCTTCAATATAATGTA---T--T--GAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * * * * ** * * * *
81943 ATGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGTTTGTGTTTGACTTATTTAAGAGCCAA
66 CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
*
82008 ACTTTGATTCTATCAAAAAAGGTGG-AAAG
131 ACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * * *
82037 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAA-AGGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT
* * * * * * * * *
82101 GCT-TCTCAATCTTGAAAAGAATGGAGACTATTAAGAG-AATCGATGCTTT-CCATATTTAA-AG
65 GCTGTCT-AATCCTAAAAAGAACGGAGATTAGTATGAGTATTC-ATG-TTTGTCGTATTTAAGA-
* * *** * ***
82162 GATGAACTTTGATTTTAAGGAAAATAG-GCCTAAG
126 GACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * ** * * * * *
82196 AGAAGATTTCCATGCAAAAGAAAATCATCAATATCGT-TCATCCTAATGAGGAGAATGTGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATAAGAAGAATATGTTTAT
* * * * *** * * * * * *
82260 AG-TGCCAAATCAC-CAAATGAATAAAGATCATTACT-AGAATCCATGTTTGTC-TCATTTGAGT
65 -GCTGTCTAATC-CTAAAAAGAACGGAGATTAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAGA
* * * *
82321 CACAAACTTAGACTT-TA-CGAAAATTGGTAGG--AA-
126 GACGAACTTTGA-TTCTATC-AAAAATGGT-GGAAAAG
* * * * * * *** *
82354 AAAAGCCTTTCCTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTGCATTTGTG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * * **
82419 GTGCCTAATCCTGAAAAGAA-TGAGGATTAGTATGAGTATTCATGTTTGTCATTTTTAAGAGATA
66 CTGTCTAATCCTAAAAAGAACGGA-GATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACG
* **
82483 AACTTTGATTTTAT-TTAAATGGTGG-AAAG
130 AACTTTGATTCTATCAAAAATGGTGGAAAAG
* * *
82512 AAAAGCTTTTCTTAC-AACACCAAAGCATCAATTTCATGTATCCTAA-AA-AAGTGAATGTGTGT
1 AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATAAGAA--GAATATGT-T
* * * * * ** * * * * * *
82574 T-CGAT-TCCCAATCTTAAAAAGAA-TGAGGGCTATTATGAG-AATCGAAGCTTGGT-TTGTTTA
62 TATGCTGT-CTAATCCTAAAAAGAACGGA-GATTAGTATGAGTATTC-ATG-TTTGTCGTATTTA
* * *** *** *
82634 A-AGGATGAACTTTGATTTTAAGGAAAAT-AACGTAAAG
123 AGA-GACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * ** * * * * * *
82671 AAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCTTGAA-GAGGAGAA-CTGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATAAGAAGAATATGTTTAT
** * * *** * * * * * *
82734 AG-TACCT-ATTCAAAAAATGAAAAAAGATCT-TTACT-AGAATCCATATGTATC-TCA-TT-AG
65 -GCTGTCTAATCCTAAAAA-GAACGGAGAT-TAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAG
* *
82792 AGGCACGAACTTAGACTT-TA-CAAAAATTGGGGTGAAAA-
125 A-G-ACGAACTTTGA-TTCTATCAAAAA-TGGTG-GAAAAG
* * * *
82830 AAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATAATGTATCCTAATAAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * * * * * * *
82895 ATGCCTAATCCTGAAATGAATGGGGATTAGTATAAGTGTTCGTGTTTGTCTTATTTAAGAGACAA
66 CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
* *
82960 ACTTTGATTCTGTCAAAAACGGTGG-AAAG
131 ACTTTGATTCTATCAAAAATGGTGGAAAAG
** ** * * * * *
82989 AAAAGCTTTTCTTATGACGCCAAAGCATCAATGTCATGCATCCTAATGAA-AGGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT
* * * * * * * * * *
83053 GCT-TCTCAATCTTGAAAAGAATGGAGACTATTAAGAG-AATCGATGCTTGCCATATTTAA-AGG
65 GCTGTCT-AATCCTAAAAAGAACGGAGATTAGTATGAGTATTC-ATGTTTGTCGTATTTAAGA-G
** * *** * **
83115 TTGAACTTTGATTTTAAGGAAAATAG-GGCTAAG
127 ACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * ** * * * * *
83148 AGAAGATTTCCATGCAAAAGAAAATCATCAATATCGT-TCATCCTAATGAGGAGAATGTGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATAAGAAGAATATGTTTAT
* * * * * *** * * * * * **
83212 ACTGCCAAATCAC-CAAATGAATAAAGATCATTACT-AGAATCCATGTTTGTC-TCATTTGAGTC
65 GCTGTCTAATC-CTAAAAAGAACGGAGATTAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAGAG
* * *
83274 ACAAACTTAGACTT-TA-CGAAAATTGGTAGG--AA-
127 ACGAACTTTGA-TTCTATC-AAAAATGGT-GGAAAAG
* * * * * * * * ** *
83306 AAAAGCCTTTCCTGCGAAACCAAAGCGTCAACATGATGTATCATAATGAGAAGACTGCGTTTGTG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-
* * * * * *
83371 GC-GCCTAATCCTGAAAAGAA-TGAGGATTAGTATGAGTATTCATGTTTTTCGTTTTTAAGAGAT
65 GCTGTCTAATCCTAAAAAGAACGGA-GATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
* * * **
83434 AAACTTTGATTTTATCGAAAACAGTGG-AAAG
129 GAACTTTGATTCTATCAAAAATGGTGGAAAAG
* ** * * * * * * *
83465 AAAAACTTTTCTTATGACACCAAAGAATCCATTTCACGTATCCTAATAA-AGTGAATGTGTGTT-
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGA-AGAATATGT-TTA
* * * * * * * ** * * * * * *
83528 CGAT-TCCCAATCTTAAAAGGAATGGGGGCTATTATGAG-AATCGAAGCTTGGT-TTGTTTAA-A
64 TGCTGT-CTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTC-ATG-TTTGTCGTATTTAAGA
* * *** *** *
83589 GGATGAACTTTGATTTTAAGGAAAAT-AACGTAAAG
126 -GACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * ** * * * * * *
83624 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT-
* * * * * * * * *
83689 G-TGTCTAATGACC--AAAAGAATGAATATCACTACT-AGAATCCATGTTTGTC-TCATTTGAGT
65 GCTGTCTAAT--CCTAAAAAGAACGGAGATTAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAGA
* * * *
83749 CATGAACTTAGACTTC-A-AAAAAATTGGTAGG--AA-
126 GACGAACTTTGA-TTCTATCAAAAA-TGGT-GGAAAAG
* * * * * * * * *
83782 AAAAGCCTTTCCTACGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAGACTACG-TTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * * *
83846 GTGCCTAATCCTGAAAAGAACGGGGATTAGTTTGAGTATTCATGTTTGTCATATTTAAGAGACAA
66 CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
* *
83911 ACTTTGATTTTATCAAAAACGGTGG-AAAG
131 ACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * * *
83940 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAA-AGGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTAT
** * * * * * * * * *
84004 GCT-TCTCAATATTGAAAAGAATGGAGACTATTAAGAG-AATCGATGCTTGCCATATTTAA-AGG
65 GCTGTCT-AATCCTAAAAAGAACGGAGATTAGTATGAGTATTC-ATGTTTGTCGTATTTAAGA-G
* * **
84066 ATGAACTTTGATT-T-TCAGGAAAATAG-GGCTAAG
127 ACGAACTTTGATTCTATCA--AAAATGGTGGAAAAG
* * * * * ** * * * * *
84099 AGAAGATTTCCATGCAAAAAAAAATCATCAATATCGT-TCATCCTAATGAGGAGAATGTGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATAAGAAGAATATGTTTAT
* * * * *** * * * * * *
84163 AG-TGCCAAATCAC-CAAATGAATAAAGATCATTACT-AGAATCCATGTTTGTC-TCATTTGAGT
65 -GCTGTCTAATC-CTAAAAAGAACGGAGATTAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAGA
* * * *
84224 CACAAACTTAGACTT-TA-CGAAAATTGGTAGG--AA-
126 GACGAACTTTGA-TTCTATC-AAAAATGGT-GGAAAAG
* * * * * * *** *
84257 AAAAGCCTTTCCTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTGCATTTGTG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * * * * **
84322 GTGCCTAATCCTGAAAAGAA-TGAGGATTAGTATGAGAATTCATGTTTGTCGTTTTTAAAAGATA
66 CTGTCTAATCCTAAAAAGAACGGA-GATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACG
* ** *
84386 AACTTTGATTTTATGGAAAACGGTGG-AAAG
130 AACTTTGATTCTATCAAAAATGGTGGAAAAG
** * * * *
84416 AAAAGCTTTTCTTATGACACCAAAGCATCAATTTCATGTATTCTAA-AA-AAGTGAATGTGTGTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAA--GAATATGT-TT
* * * * * * * ** * * * *
84479 -CGAT-TCCCAATCTTAAAAGGAATGGGGGCTATTATGAG-AATCGAAGCTTG--GTTAGTTTAA
63 ATGCTGT-CTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTC-ATGTTTGTCG-TA-TTTAA
* * *** ***
84539 -AGGATGAACTTTGATTTTAAGGAAAAT--AACATAAAG
124 GA-GACGAACTTTGATTCTATCAAAAATGGTGGA-AAAG
* * * * ** * * * *
84575 AAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATAAGAAGAATATGTTTAT
** * * *** * * * * * *
84638 AG-TACCT-ATTCAAAAAATGAAAAAAGATCT-TTACT-AGAATCCATATGTATC-TCA-TT-AG
65 -GCTGTCTAATCCTAAAAA-GAACGGAGAT-TAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAG
*
84696 AGGCACGAACTTAGACTT-TA-CAAAAATTGGTGTGAAAA-
125 A-G-ACGAACTTTGA-TTCTATCAAAAA-TGGTG-GAAAAG
* * * *
84734 AAAA-CTTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTGACG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* *
84798 CTGTCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAA
66 CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
84863 ACTTTGATTCTATCAAAAATGGTGGAAAAG
131 ACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * *
84893 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATG-TTTA
* * * * * * * * * *
84957 TGCT-TCCCAATCTTAAAAAGAATGGAGACTA-TAACGAG-AATCGATGCTTGCCATATTTAAAA
64 TGCTGT-CTAATCCTAAAAAGAACGGAGATTAGT-ATGAGTATTC-ATGTTTGTCGTATTTAAGA
* * *** ** **
85019 GATGAACTTTGATTTTAAGGAAAAT-AAGGCTAAG
126 GACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * ** ** * * * * * *
85053 AAAAGATTTCCATTGTAAAAGAAAATCATCAATAACATTTATCCTAATGAGGAGAATGTGTTTAT
1 AAAAGCTTTTC-TTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT
* * * *** * * * * *
85118 AG-TGCCAAATCACT-AAATGAATAAAGATCATTACT-AGAATCCATGTTTGTC-TCATTTGAGC
65 -GCTGTCTAATC-CTAAAAAGAACGGAGATTAGTA-TGAGTATTCATGTTTGTCGT-ATTTAAG-
* **
85179 CG-CGAA-TTTAGACTT-TAT-AAAAATTGG-GGCGAAG
125 AGACGAACTTT-GA-TTCTATCAAAAA-TGGTGGAAAAG
* * * * * * * * *
85213 -AAAGCCTTCCTTGTGAAACCAAAGCATCAATGTCGTGTAACCTAATAGGAAGACTACGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * *
85277 --GTACTTAATCCTGAAAAA-AA-AG-GATTATTATCAGTATTCTTGTTTGTCGTATTTAAGAGA
66 CTGT-C-TAATCCT-AAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGA
* * *
85337 CAAATTTTGATTCTGTCAAAAATGGTGG-AAAG
128 CGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * * * *
85369 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTTGCATCCTAATAA-AAGGAATATGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAA-GAATATGTTTAT
* * * * * * * * * *
85433 GCT-TCTCAATCTTGAAAAG-ATGGAGACT-GTTATGAGAATTGATGCTCGCCTTATTTAA-AGG
65 GCTGTCT-AATCCTAAAAAGAACGGAGATTAG-TATGAGTATTCATGTTTGTCGTATTTAAGA-G
* * * ** * * *
85494 ATGAACTTTAATTTTAAGAAAACTAG-GGTAAAG
127 ACGAACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * ** * * * * * * * *
85527 AAAAGATTTCCATGC-AAAATAATATCATCAATATCGTTTATCCTAATGAGCAGATTGTGTTTGT
1 AAAAGCTTTTCTTGCGAAACCAA-AGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTAT
** ** * ** * * * * *
85591 AG-TACCTAATCAGAAAATGAACAAAGATCT-TTACT-AGAATCCATGTTTGTCTTATTTGAG-G
65 -GCTGTCTAATCCTAAAAAGAACGGAGAT-TAGTA-TGAGTATTCATGTTTGTCGTATTTAAGAG
*
85652 CACGAACTTAGACTT-TA-CAAAAATGGGTGTGAAAA-
127 -ACGAACTTTGA-TTCTATCAAAAAT-GGTG-GAAAAG
* * * *
85687 AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTAAGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
* * * * *
85752 CTGCCTAATCCTAAAAAGAACGGGGATTAGTATAAGTTTTCATGTTTGTCGTATTTAAGAGACAA
66 CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
85817 ACTTTGATTCTATCAAAAATGGTGG-AAAG
131 ACTTTGATTCTATCAAAAATGGTGGAAAAG
* * * *
85846 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAGCCTAAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
85893 GAAGGGAATG
Statistics
Matches: 5025, Mismatches: 1632, Indels: 1042
0.65 0.21 0.14
Matches are distributed among these distances:
151 16 0.00
152 78 0.02
153 10 0.00
154 4 0.00
155 12 0.00
156 125 0.02
157 428 0.09
158 1527 0.30
159 2110 0.42
160 542 0.11
161 169 0.03
162 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (160 bp):
AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATG
CTGTCTAATCCTAAAAAGAACGGAGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACGA
ACTTTGATTCTATCAAAAATGGTGGAAAAG
Found at i:88351 original size:475 final size:475
Alignment explanation
Indices: 86710--89629 Score: 3652
Period size: 476 Copynumber: 6.1 Consensus size: 475
86700 ATGGTGTCTA
* *
86710 CATGTTTGTCATATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
*** * * ** * * *
86775 TTGCAACCCCAAAGCATCAATGTCATTTGCCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCA
66 TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC-
* ** *
86840 TGAAAAGAATGGAGACTGCTATGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
130 TTAAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
* * * * * *
86905 AAGGAAAATAGGGCAAAGAAAAGATTTTCATACAAAAG-AAATTATCAATATCATTTATCCTATT
195 AAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
86969 GAGGAGAATGTGTTTATAGTGCCTAGTGACCAAAA-GAATGAAGATCATTACTAGAATCCATGTT
260 GAGGAGAATGTGTTTATAGTACCTAATCA-CAAAATGAATAAAGATCATTACTAGAATCCATGTT
* * * * *
87033 TGTCTCATTTGAGGCATGAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTCATGCGAA
324 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
* * * *
87098 ACCAAAGCATCAATGTCG-TGTATCCTAATAAGAAGACTACGTTTATGGTACCTAATCCTAAAAA
389 ACCAAAGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * *
87162 AAATGGGGATTATTATCG-GTATT
453 GAACGGGGATTAGTAT-GAGTATT
* * * *
87185 CTTGTTGGTCATATTTAAGAGACAAACTTTGATTCTGTCAAAAACGGTAGAAAGAAAAGCTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
87250 TTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAAGCAATGTGTTTTTGCTTCTCAATCT
66 TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCT
*
87315 TGAAACA-AATGGAGAC-AGTTATGAGAATCGATGCTTGCCTTATTTAAAAGATGAACTTTGATT
131 T-AAA-AGAATGGAGACTA-TTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATT
* * * * *
87378 TTAAGAAAAAT-AGGATAAATAAAAGATTTCCAAGCAAAATAAAATCATCAATTTCATTTATCCT
193 TTAAGGAAAATAAGG-TAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
87442 AATGAGCAGAATGTGTTTATAGTACCTAATCACAAAATTAATGAAGATCTTTACTAGAATCTATG
257 AATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATG
* * * *
87507 TTTGTCTCATTTGAGGCACGAACATAGACTTTTCAAAAATTGGTGGGAGAAAAGCCTTTCTTGCA
322 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG
** * * *
87572 AAACCAAAGCATCTTTATGATGTAT-TTGAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA
387 AAACCAAAGCATCAATATGATGTATCCT-AATAAGAAGACTATGTTTATGGTGCCTAATCCTGAA
87636 AAGAACGGGGATTAGTATGAGTATT
451 AAGAACGGGGATTAGTATGAGTATT
*
87661 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * * *
87726 TTGT-AGCCCCAAAGCATCAATGTCATTTACCCTAATGAGGGGAATGTGTTTTGGCATCCAAATC
66 TTATGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC
* * ** * *
87790 ATGAAAAGAAT-GAGGACTGTTACAAGAATCGAGGCTTGCCTTATTTACAGGATGAACTTTGATT
130 -TTAAAAGAATGGA-GACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATT
* * *
87854 TTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
193 TTAAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * * *
87919 TTGTGGAGAATGTGTTTATAGTGCCTAATGACCTAAA-GAATAAAGATCATTACTAGAATCCATG
258 ATGAGGAGAATGTGTTTATAGTACCTAATCA-CAAAATGAATAAAGATCATTACTAGAATCCATG
* * * * * *
87983 TTTGTCTCATTTGAGTCACAAACTTAGACTTTACGAAAATTGGTAGGAAAAAAGCCTTTCCTGTG
322 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG
* * *
88048 AAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTACG-TTGTGGTGCCTAATCCTGAAA
387 AAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
*
88112 AGAACGAGGATTAGTATGAGTATT
452 AGAACGGGGATTAGTATGAGTATT
* * * * * *
88136 CATGTTTGTCGTTTTTAAGAGATAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAACTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * ** * * * *
88201 TTATGACACCAAAGAATCCATTTCACATATCCTAATAAAGTGAATGTGTGTTTGATTCCCAATCT
66 TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCT
* * * * * *
88266 TAAAAGGATTGGGGGCTATTATGAGAATCGAAGCTT-CGTTTGTTTAAAGGATGAACTTTGATTT
131 TAAAA-GAATGGAGACTATTATGAGAATCGATGCTTGC-CTTATTTAAAGGATGAACTTTGATTT
* *
88330 TAAGGAAAATAATGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGA
194 TAAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-A
** * * * *
88395 A-GAGGAGAAT-TGTTTATAGTACCTGTTCAAAAAATGAAAAAAGAT-ATTTACTAG-ATCTATA
258 ATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCA-TTACTAGAATCCATG
* * * *
88456 TGTATCTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGGTGTGAAAAAAAAGCCTTTCTTG
322 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-G-GAAAAAAGCCTTTCTTG
* * * *
88521 CGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTACGCTGTCTAATCCTAA
385 CGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGA
* *
88586 AAAGAATGGTGATTAGTATGAGTATT
450 AAAGAACGGGGATTAGTATGAGTATT
* * * * *
88612 CTTGGTTGTCGTATTTAAGCGACAAACTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTT
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTT
88677 CTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC
65 CTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC
* * * * *
88742 TTAAAAAGAATGGAGACTATTACGAGAATCGATGATTGCCATATTTAAAAGATGAACTTTTATTT
130 TT-AAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTT
* *
88807 TAAGGAAAATAAGGCT-AAGAAAAGATTTCCATTGTAAAAGAAAATCATCAATATCATTAATCCT
194 TAAGGAAAATAAGG-TAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
88871 AATGAGGAGAATGTGTTTATAGTGCCAAATCACTAAATGAATAAAGATCATTACTAGAATCCATG
257 AATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATG
* * * *
88936 TTTGTCTCATTTGAGGCGCGAATTTAGACTTTATAAAAATTGG-GGGAAGAAAGCCTTTCTTGCG
322 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG
* * *
89000 AAACTAAAGCATCAA-ATTG-TGTATCCTAATAAGAGGACTATGTTTATGGTACCTAATCCTGAA
387 AAACCAAAGCATCAATA-TGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * *
89063 AAAAATGGGGATTATTATCAGTATT
451 AAGAACGGGGATTAGTATGAGTATT
* * * * * *
89088 CTTGTGTGTCGTATTTAAGAAACAAACTTTGATTCTATCAGAAACGATGGAAAGAAAAGCTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * *
89153 TTACGACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTTGCTTCTCAATCT
66 TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCT
* *
89218 TGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTAAAGGATTAACTTTGATTTT
131 T-AAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
* * *
89283 AAGAAAAATAAGGTAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAAT
195 AAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
89348 GAGCAGAATGTGTTTATAGCACCTAATCACAAAATGAATGAAGATCTTTACTAGAATCCATGTTT
260 GAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
* * *
89413 GTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGAAAAGCCTTTCTTGCAAAA
325 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * * * * * *
89478 CCAAAGCATCATTATGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGA
390 CCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* *
89543 ACAGGGATTAGTATGAGTAAT
455 ACGGGGATTAGTATGAGTATT
* ** * *
89564 AATGTTTGTCATATTTAAGAGACAAAAGTTGGTTCTATCAAAAACGGTGCAAA-AAAAGCTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
89628 TT
66 TT
89630 GCAACCCCAA
Statistics
Matches: 2085, Mismatches: 319, Indels: 82
0.84 0.13 0.03
Matches are distributed among these distances:
473 47 0.02
474 168 0.08
475 723 0.35
476 836 0.40
477 187 0.09
478 45 0.02
479 36 0.02
480 43 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
TTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCT
TAAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGATGAACTTTGATTTTA
AGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
AGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTG
TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
CAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
CGGGGATTAGTATGAGTATT
Found at i:89142 original size:952 final size:943
Alignment explanation
Indices: 86710--89640 Score: 4088
Period size: 952 Copynumber: 3.1 Consensus size: 943
86700 ATGGTGTCTA
* * *
86710 CATGTTTGTCATATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
* *
86775 TTGCAACCCCAAAGCATCAATGTCATTTGCCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCA
66 TTG-TACCCCAAAGCATCAATGTCATTTACCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCA
* *
86840 TGAAAAGAATGGAGACTGCTATGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
130 TGAAAAGAATGGAGACTGTTACGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTT
* *
86905 AAGGAAAATAGGGCAAAGAAAAGATTTTCATACAAAAG-AAATTATCAATATCATTTATCCTATT
195 AAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATT
* * *
86969 GAGGAGAATGTGTTTATAGTGCCTAGTGACCAAAAGAATGAAGATCATTACTAGAATCCATGTTT
260 GAGGAGAATGTGTTTATAGTGCCTAATGA-CTAAAGAATAAAGATCATTACTAGAATCCATGTTT
*
87034 GTCTCATTTGAGGCATGAACTTAGACTTTATAAAAATTGGGGGGAAGAAAGCCTTTCATGCGAAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATT-GGGGGAAGAAAGCCTTTCATGCGAAA
* *
87099 CCAAAGCATCAATGTCGTGTATCCTAATAAGAAGACTACGTTTATGGTACCTAATCCTAAAAAAA
388 CCAAAGCATCAATAT-GTGTATCCTAATAAGAAGACTACGTTTATGGTACCTAATCCTGAAAAAA
* * * *
87164 ATGGGGATTATTATCGGTATTCTTGTTGGTCATATTTAAGAGACAAACTTTGATTCTGTCAAAAA
452 ATGGGGATTATTATCAGTATTCTTGTT-GTCGTATTTAAGAGACAAACTTTGATTCTATCAGAAA
* * *
87229 CGGTAGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAAGCAA
516 CGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGCATCCTAAT-AAAGGAA
87294 TGTGTTTTTGCTTCTCAATCTTGAAACA-AATGGAGAC-AGTTATGAGAATCGATGCTTGCCTTA
580 TGTGTTTTTGCTTCTCAATCTT-AAA-AGAATGGAGACTA-TTATGAGAATCGATGCTTGCCTTA
* * *
87357 TTTAAAAGATGAACTTTGATTTTAAGAAAAAT-AGGATAAATAAAAGATTTCCAAGCAAAATAAA
642 TTTAAAGGATGAACTTTGATTTTAAGAAAAATAAGG-TAAAGAAAAGATTTCCATGCAAAATAAA
* *
87421 ATCATCAATTTCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACAAAATTAATGA
706 ATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACAAAATGAATGA
* *
87486 AGATCTTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACATAGACTTTTCAAAAATTGGT
771 AGATCTTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* *
87551 GGGAGAAAAGCCTTTCTTGCAAAACCAAAGCATCTTTATGATGTATTTGAATGAGAAGACTATGT
836 GGGAGAAAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATGTATCT-AATGAGAAGACTATGT
* *
87616 TTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATT
900 TTATGGTGTCTAATCTTGAAAAGAA-AGGGATTAGTATGAGTATT
87661 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
*
87726 TTGTAGCCCCAAAGCATCAATGTCATTTACCCTAATGAGGGGAATGTGTTTTGGCATCCAAATCA
66 TTGTA-CCCCAAAGCATCAATGTCATTTACCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCA
* *
87791 TGAAAAGAAT-GAGGACTGTTACAAGAATCGAGGCTTGCCTTATTTACAGGATGAACTTTGATTT
130 TGAAAAGAATGGA-GACTGTTACGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTT
87855 TAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAT
194 TAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAT
*
87920 TGTGGAGAATGTGTTTATAGTGCCTAATGACCTAAAGAATAAAGATCATTACTAGAATCCATGTT
259 TGAGGAGAATGTGTTTATAGTGCCTAATGA-CTAAAGAATAAAGATCATTACTAGAATCCATGTT
* * ** * * * *
87985 TGTCTCATTTGAGTCACAAACTTAGACTTTACGAAAATTGGTAGGAAAAAAGCCTTTCCTGTGAA
323 TGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGG-GGGAAGAAAGCCTTTCATGCGAA
* * * *
88050 ACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTACG-TTGTGGTGCCTAATCCTGAAAAG
387 ACCAAAGCATCAATATG-TGTATCCTAATAAGAAGACTACGTTTATGGTACCTAATCCTGAAAAA
* * * * * * * *
88114 AACGAGGATTAGTATGAGTATTCATGTTTGTCGTTTTTAAGAGATAAACTTTGATTTTATC-GAA
451 AATGGGGATTATTATCAGTATTCTTG-TTGTCGTATTTAAGAGACAAACTTTGATTCTATCAG-A
* * * * * ***
88178 AACGGTGGAAAGAAAAACTTTTCTTATGACACCAAAGAATCCATTTCACATATCCTAATAAAGTG
514 AACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGCATCCTAATAAAG-G
* * * * * * * *
88243 AATGTGTGTTTGATTCCCAATCTTAAAAGGATTGGGGGCTATTATGAGAATCGAAGCTT-CGTTT
578 AATGTGTTTTTGCTTCTCAATCTTAAAA-GAATGGAGACTATTATGAGAATCGATGCTTGC-CTT
* * *
88307 GTTTAAAGGATGAACTTTGATTTTAAGGAAAATAATGTAAAGAAAAGATTTCCATGCAAAATAAA
641 ATTTAAAGGATGAACTTTGATTTTAAGAAAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAA
* ** * **
88372 ATCATCAATATCATTTATCCTGAA-GAGGAGAAT-TGTTTATAGTACCTGTTCAAAAAATGAAAA
706 ATCATCAATATCATTTATCCT-AATGAGCAGAATGTGTTTATAGTACCTAATCACAAAATGAATG
* * * * *
88435 AAGATATTTACTAG-ATCTATATGTATCTCATTAGAGGCACGAACTTAGACTTTACAAAAATTGG
770 AAGATCTTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * *
88499 TGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTA
835 TG-G-GAGAAAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATGTAT-CTAATGAGAAGACTA
* * * * *
88564 TGTTTACGCTGTCTAATCCTAAAAAGAATGGTGATTAGTATGAGTATT
897 TGTTTATGGTGTCTAATCTTGAAAAGAAAGG-GATTAGTATGAGTATT
* * * * *
88612 CTTGGTTGTCGTATTTAAGCGACAAACTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTT
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GAAAAGAAAAGCTTTT
* * * * * * *
88677 CTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATC
65 CTTGT-ACCCCAAAGCATCAATGTCATTTACCCTAATGAAGGGAATGTGTTTTGGCATCCAAATC
* * * * * * * *
88742 TTAAAAAGAATGGAGACTATTACGAGAATCGATGATTGCCATATTTAAAAGATGAACTTTTATTT
129 ATGAAAAGAATGGAGACTGTTACGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTT
* * * * *
88807 TAAGGAAAATAAGGCTAAGAAAAGATTTCCATTGTAAAAGAAAATCATCAATATCATTAATCCTA
194 TAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
88872 ATGAGGAGAATGTGTTTATAGTGCCAAATCACTAAATGAATAAAGATCATTACTAGAATCCATGT
258 TTGAGGAGAATGTGTTTATAGTGCCTAATGACTAAA-GAATAAAGATCATTACTAGAATCCATGT
* * *
88937 TTGTCTCATTTGAGGCGCGAATTTAGACTTTATAAAAATTGGGGGAAGAAAGCCTTTCTTGCGAA
322 TTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGGGGGAAGAAAGCCTTTCATGCGAA
* * *
89002 ACTAAAGCATCAA-ATTGTGTATCCTAATAAGAGGACTATGTTTATGGTACCTAATCCTGAAAAA
387 ACCAAAGCATCAATA-TGTGTATCCTAATAAGAAGACTACGTTTATGGTACCTAATCCTGAAAAA
*
89066 AATGGGGATTATTATCAGTATTCTTGTGTGTCGTATTTAAGAAACAAACTTTGATTCTATCAGAA
451 AATGGGGATTATTATCAGTATTCTTGT-TGTCGTATTTAAGAGACAAACTTTGATTCTATCAGAA
* *
89131 ACGATGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGCATCCTAATGAAGGGA
515 ACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGCATCCTAAT-AAAGGA
*
89196 ATGTGTTTTTGCTTCTCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTAT
579 ATGTGTTTTTGCTTCTCAATCTT-AAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTAT
* *
89261 TTAAAGGATTAACTTTGATTTTAAGAAAAATAAGGTAAAGAAAAGATTTTCATGCAAAATAAAAT
643 TTAAAGGATGAACTTTGATTTTAAGAAAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAAT
*
89326 CATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGCACCTAATCACAAAATGAATGAAG
708 CATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAG
* *
89391 ATCTTTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
773 ATCTTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* *
89456 GAGAAAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATTCAAATGAGAAGACTATGTTT
838 GAGAAAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATGTA-TCTAATGAGAAGACTATGTTT
*
89521 ATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTAAT
902 ATGGTGTCTAATCTTGAAAAGAA-AGGGATTAGTATGAGTATT
* ** * *
89564 AATGTTTGTCATATTTAAGAGACAAAAGTTGGTTCTATCAAAAACGGTGCAAA-AAAAGCTTTTC
1 CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
*
89628 TTGCAACCCCAAA
66 TTG-TACCCCAAA
89641 CGTGGCTTGC
Statistics
Matches: 1727, Mismatches: 217, Indels: 73
0.86 0.11 0.04
Matches are distributed among these distances:
949 47 0.03
950 71 0.04
951 628 0.36
952 760 0.44
953 175 0.10
954 46 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (943 bp):
CATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
TTGTACCCCAAAGCATCAATGTCATTTACCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCAT
GAAAAGAATGGAGACTGTTACGAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTA
AGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTG
AGGAGAATGTGTTTATAGTGCCTAATGACTAAAGAATAAAGATCATTACTAGAATCCATGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGGGGGAAGAAAGCCTTTCATGCGAAACCA
AAGCATCAATATGTGTATCCTAATAAGAAGACTACGTTTATGGTACCTAATCCTGAAAAAAATGG
GGATTATTATCAGTATTCTTGTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAGAAACGGTG
GAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGCATCCTAATAAAGGAATGTGTT
TTTGCTTCTCAATCTTAAAAGAATGGAGACTATTATGAGAATCGATGCTTGCCTTATTTAAAGGA
TGAACTTTGATTTTAAGAAAAATAAGGTAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATA
TCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTAC
TAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGAAAAG
CCTTTCTTGCAAAACCAAAGCATCATTATGATGTATCTAATGAGAAGACTATGTTTATGGTGTCT
AATCTTGAAAAGAAAGGGATTAGTATGAGTATT
Found at i:89301 original size:159 final size:157
Alignment explanation
Indices: 86760--89362 Score: 504
Period size: 159 Copynumber: 16.4 Consensus size: 157
86750 AAAACAGTGG
* * * * **
86760 AAAGAAAAGCTTTTCTTGC-AACCCCAAAGCATCAATGTCATTTGCCCTAATGAAGGGAATGTGT
1 AAAGAAAAGCTTTTCTTACGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGT
* * * ** *
86824 TTTGGCATCCAAATCATGAAAAGAATGGAGACTGCTATGAGAATCGAGGCTTGCCTTATTTAAAG
65 TTTTGCTTCCAAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATG-TTGCCTTATTT-AAG
* * * *
86889 GATGAACTTTGATTTTAAGGAAAATAGGGC
128 GACGAACTTTGATTTTAAGAAAAATAAGGT
* * ** ** * *
86919 AAAGAAAAGATTTTCATAC-AAAAGAAATTATCAATATCATTTATCCTATTG-AGGAGAATGTGT
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGTGT
* * * * * * * *
86982 TTATAG-TGCCTAGTGACC--AAAAGAATGAAGA-TCATTACT-AGAATCCATGTTTGTCTCATT
65 TT-TTGCTTCCAAAT--CCTGAAAAGAATGGAGACT-ATTA-TGAGAATCGATG-TTGCCTTATT
* * * * * ** *
87042 TGAGGCATGAACTTAGACTTTATA-AAAATTGGGGG
124 TAAGG-ACGAACTTTGATTTTA-AGAAAAATAAGGT
* * * * * * * * **
87077 GAAG-AAAGCCTTTCATGCGAAACCAAAGCATCAATGTCGTGTATCCTAAT-AAGAAGACTACGT
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGT
* * * * * * * * * * * *
87140 TTATGGTACCTAATCCTAAAAAAAATGGGGATTATTATCG-GTATTC-TTGTTGGTCATATTTAA
65 TTTTGCTTCCAAATCCTGAAAAGAATGGAGACTATTAT-GAG-AATCGATGTT-GCCTTATTTAA
* * * *
87203 GAGACAAACTTTGATTCT--GTCAAAA-ACGGT
127 G-GACGAACTTTGATTTTAAG-AAAAATAAGGT
* * * * *
87233 AGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAAGCAATGTG
1 --AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTG
*
87298 TTTTTGCTTCTC-AATCTTGAAACA-AATGGAGAC-AGTTATGAGAATCGATGCTTGCCTTATTT
64 TTTTTGCTTC-CAAATCCTGAAA-AGAATGGAGACTA-TTATGAGAATCGATG-TTGCCTTATTT
* *
87360 AAAAGATGAACTTTGATTTTAAGAAAAAT-AGGAT
125 -AAGGACGAACTTTGATTTTAAGAAAAATAAGG-T
* * ** * ** * * * *
87394 AAATAAAAG-ATTTCCAAGCAAAATAAAATCATCAATTTCATTTATCCTAATG-AGCAGAATGTG
1 AAAGAAAAGCTTTTCTTA-CGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTG
* * * * * * * *
87457 TTTATAG-TACCTAATCAC--AAAATTAATGAAGATCT-TTACT-AGAATCTATGTTTGTCTCAT
64 TTT-TTGCTTCCAAATC-CTGAAAA-GAATGGAGA-CTATTA-TGAGAATCGATG-TTGCCTTAT
* * * * *
87517 TTGAGGCACGAACATAGACTTTT--CAAAAAT-TGGT
123 TTAAGG-ACGAACTTTGA-TTTTAAGAAAAATAAGGT
** * * * ** * * * * *
87551 GGGAGAAAAGCCTTTCTTGCAAAACCAAAGCATCTTTATGATGTAT-TTGAATG-AGAAGACTAT
1 -AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCT-AATGAAG-GGAATGT
* * * * * * * * * * * *
87614 GTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTC-ATGTTTGTCATATTTA
63 GTTTTTGCTTCCAAATCCTGAAAAGAATGGAGACTATTATGAG-AATCGATG-TTGCCTTATTTA
* * ** *
87678 AGAGACAAACTTTGATTCT-ATCAAAA-ACGGT
126 AG-GACGAACTTTGATTTTAAGAAAAATAAGGT
** * * * *
87709 GAAAAGAAAAGCTTTTCTT--GTAGCCCCAAAGCATCAATGTCATTTACCCTAATGAGGGGAATG
1 --AAAGAAAAGCTTTTCTTACG-A-AACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATG
* * * * ** *
87772 TGTTTTGGCATCCAAATCATGAAAAGAAT-GAGGACTGTTACAAGAATCGAGGCTTGCCTTATTT
62 TGTTTTTGCTTCCAAATCCTGAAAAGAATGGA-GACTATTATGAGAATCGATG-TTGCCTTATTT
* * * *
87836 ACAGGATGAACTTTGATTTTAAGGAAAATAGGGC
125 A-AGGACGAACTTTGATTTTAAGAAAAATAAGGT
* * * * ** * * * *
87870 AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTG-TGGAGAATGTGT
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGTGT
* * * ** * * *
87934 TTATAG-TGCCTAATGACCT--AAAGAATAAAGA-TCATTACT-AGAATCCATGTTTGTCTCATT
65 TT-TTGCTTCCAAAT--CCTGAAAAGAATGGAGACT-ATTA-TGAGAATCGATG-TTGCCTTATT
* * * * * * *
87994 TGAGTCACAAACTTAGACTTTACG-AAAAT-TGGT
124 TAAG-GACGAACTTTGATTTTAAGAAAAATAAGGT
* * ** * * * **
88027 AGGAA-AAAAGCCTTTCCTGTGAAACCAAAGCATCAATATGATGTATCCTAATG-AGAAGACTAC
1 A--AAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGT
* * * * * * * * *
88090 G-TTGTGGTGCCTAATCCTGAAAAGAA-CGAGGATTAGTATGAGTATTC-ATGTTTGTCGTT-TT
63 GTTTTTGCTTCCAAATCCTGAAAAGAATGGA-GACTATTATGAG-AATCGATG-TTG-CCTTATT
** * ****
88151 TAAGAGATAAACTTTGATTTTATCGAAAACGGTGG-
124 TAAG-GACGAACTTTGATTTTA-AGAAAAATAAGGT
* * * * * * ** * * *
88186 AAAGAAAAACTTTTCTTATGACACCAAAGAATCCATTTCACATATCCTAATAAAGTGAATGTGTG
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTT
* * * * * * * * *
88251 TTTGATTCCCAAT-CTTAAAAGGATTGGGGGCTATTATGAGAATCGAAGCTT-CGTTTGTTTAAA
66 TTTGCTTCCAAATCCTGAAAA-GAATGGAGACTATTATGAGAATCGATG-TTGC-CTTATTT-AA
* * *
88314 GGATGAACTTTGATTTTAAGGAAAATAATGT
127 GGACGAACTTTGATTTTAAGAAAAATAAGGT
* * * * * ** * *
88345 AAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATCCTGAA-G-AGGAGAAT-TG
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCT-AATGAAGG-GAATGTG
* * *** * * * ** *
88407 TTTATAGTACCTGTTCAAAAAATGAAAA-AA--GATA-T-TTACT-AG-ATCTATATGTATCTCA
64 TTT-T--T-GCT-TCCAAATCCTGAAAAGAATGGAGACTATTA-TGAGAATCGATGT-TGCCTTA
* * * **
88465 -TTAGAGGCACGAACTTAGACTTT-ACAAAAATTGGTGT
122 TTTA-AGG-ACGAACTTTGATTTTAAGAAAAATAAG-GT
* * * * * * *
88502 GAAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT-AAGAAGACTATG
1 -AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTG
** * * * * * * * * *
88566 TTTACGCTGT-CTAATCCTAAAAAGAATGGTGATTAGTATGAGTATTC-TTGGTTGTCGTATTTA
64 TTTTTGCT-TCCAAATCCTGAAAAGAATGGAGACTATTATGAG-AATCGAT-GTTGCCTTATTTA
* * ** ** *
88629 AGCGACAAACTTTGATTCTATCAAAAATGGTGGA
126 AG-GACGAACTTTGATTTTAAGAAAAAT-AAGGT
* * *
88663 AAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTT
* * * * * *
88728 TTTGCTTCCCAATCTTAAAAAGAATGGAGACTATTACGAGAATCGATGATTGCCATATTTAAAAG
66 TTTGCTTCCAAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATG-TTGCCTTATTT-AAGG
* * *
88793 ATGAACTTTTATTTTAAGGAAAATAAGGCT
129 ACGAACTTTGATTTTAAGAAAAATAAGG-T
* * *** ** *
88823 -AAGAAAAGATTTCCATTGTAAAAGAAAATCATCAATATCAT-TAATCCTAATG-AGGAGAATGT
1 AAAGAAAAGCTTTTC-TTACGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGG-GAATGT
* * * ** * * *
88885 GTTTATAG-TGCCAAATCACT-AAATGAATAAAGA-TCATTACT-AGAATCCATGTTTGTCTCAT
63 GTTT-TTGCTTCCAAATC-CTGAAAAGAATGGAGACT-ATTA-TGAGAATCGATG-TTGCCTTAT
* * * * ** *
88946 TTGAGGCGCGAA-TTTAGACTTT-ATAAAAATTGGGG
123 TTAAGG-ACGAACTTT-GATTTTAAGAAAAATAAGGT
* * * * ** * *
88981 GAAG-AAAGCCTTTCTTGCGAAACTAAAGCATCAA-ATTGTGTATCCTAAT-AAGAGGACTATGT
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGT
* * * * * * * * * * * *
89043 TTATGGTACCTAATCCTGAAAAAAATGGGGATTATTATCAGTATTC-TTGTGTGTCGTATTTAAG
65 TTTTGCTTCCAAATCCTGAAAAGAATGGAGACTATTATGAG-AATCGATGT-TGCCTTATTTAAG
* * * *
89107 AAACAAACTTTGATTCTATCAGAAACGAT--GG-
128 -GACGAACTTTGATT-T-TAAGAAA-AATAAGGT
* *
89138 AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTT
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTT
* *
89203 TTTGCTTCTC-AATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTATTTAAAG
66 TTTGCTTC-CAAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATG-TTGCCTTATTT-AAG
**
89267 GATTAACTTTGATTTTAAGAAAAATAAGGT
128 GACGAACTTTGATTTTAAGAAAAATAAGGT
* * * * ** * * *
89297 AAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATG-AGCAGAATGTGT
1 AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGT
89361 TT
65 TT
89363 ATAGCACCTA
Statistics
Matches: 1723, Mismatches: 542, Indels: 358
0.66 0.21 0.14
Matches are distributed among these distances:
154 8 0.00
155 15 0.01
156 81 0.05
157 146 0.08
158 498 0.29
159 666 0.39
160 266 0.15
161 31 0.02
162 3 0.00
163 4 0.00
164 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTT
TTTGCTTCCAAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGTTGCCTTATTTAAGGAC
GAACTTTGATTTTAAGAAAAATAAGGT
Found at i:89980 original size:395 final size:396
Alignment explanation
Indices: 89250--90025 Score: 1110
Period size: 395 Copynumber: 2.0 Consensus size: 396
89240 GAGAATCGAT
* ** *
89250 GCTTGCCTTATTTAAAGGATTAACTTTGATTTTAAGAAAAATAAGGTAAAGAAAAGATTTTCATG
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTGGAAGAAAAATAAGGCAAAGAAAAGATTTTCATG
*
89315 CAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGCACCTAATCACAA
66 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGCACCTAATCACAA
* * *
89380 AATGAATGAAGATCTTTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACA
131 AATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * ** *
89445 AAAATTGGTGGGAGAAAAGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATTCAAATGAGA
196 AAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAACATGATCTATCCAAATGAGA
* * * *
89510 AGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTAATAATGTTTGTCA
261 AGACTACGTTTATGGTGCCAAATCCTGAAAAGAACAGGGATTAGTATGAGTAATAATGTTTGTCA
*
89575 TATTTAAGAGACAAAAGTTG-GTTCTATCAAAAACGGTGCAAA-AAAAGCTTTTCTTGCAACCCC
326 TATTTAAGAGACAAAAGTTGACTT-TATCAAAAACGGTGCAAAGAAAAGCTTTTCTTGCAACCCC
89638 AAACGTG
390 AAACGTG
* *
89645 GCTTGCCTTATTTAAAGGATGAACTTTGATTGGAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
1 GCTTGCCTTATTTAAAGGATGAACTTTGATTGGAAGAAAAATAAGGCAAAGAAAAGATTTTCATG
* * *** *
89710 CAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTTTCTAATGACCA
66 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGCACCTAATCA-CA
* *
89775 AAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTAC
130 AAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * *
89839 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAACATGATGTATCCTAATGAG
195 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAACATGATCTATCCAAATGAG
* * * * *
89904 AAGACTGCGTTTGTGGTGCCAAATCCTGAAAAGAA-TGAGGATTAGTATGAGTATTCATGTTTGT
260 AAGACTACGTTTATGGTGCCAAATCCTGAAAAGAACAG-GGATTAGTATGAGTAATAATGTTTGT
* * ** *
89968 CATTTTTAAGAGATAAACTTTGACTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
324 CATATTTAAGAGACAAAAGTTGACTTTATCAAAAACGGTGCAAAGAAAAGCTTTTCTT
90026 ACGACACCAA
Statistics
Matches: 334, Mismatches: 43, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
394 1 0.00
395 313 0.94
396 20 0.06
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (396 bp):
GCTTGCCTTATTTAAAGGATGAACTTTGATTGGAAGAAAAATAAGGCAAAGAAAAGATTTTCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGCACCTAATCACAA
AATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
AAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAACATGATCTATCCAAATGAGA
AGACTACGTTTATGGTGCCAAATCCTGAAAAGAACAGGGATTAGTATGAGTAATAATGTTTGTCA
TATTTAAGAGACAAAAGTTGACTTTATCAAAAACGGTGCAAAGAAAAGCTTTTCTTGCAACCCCA
AACGTG
Found at i:91337 original size:476 final size:475
Alignment explanation
Indices: 89644--91453 Score: 2294
Period size: 476 Copynumber: 3.8 Consensus size: 475
89634 CCCCAAACGT
** * * *
89644 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGGAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCAT
* ** *
89709 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTTTCTAATGACC
66 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCA-C
* * * *
89774 AAAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA
130 AAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * * *
89838 CAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAACATGATGTATCCTAATGA
195 CAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAA
** * * * *
89903 GAAGACTGCGTTTGTGGTGCCAAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGT
260 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGT
* *
89968 CATTTTTAAGAGATAAACTTTGACTT-TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACA
325 CATATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACA
* ** * * *
90032 CCAAAGCATCAATTTCATGTATCCTAAAAAAGTGAATGTGTGTTCG-ATTCCCAATCTTAAAAGG
389 CCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTCGCA-TCCCAATC-TAAAAAG
* * *
90096 AATGGTGGCTATTATGAGAATCGA
452 AATGGAGACTATTACGAGAATCGA
* ** * *
90120 AGCTTGGTTTGTTTAAAGGATGAACTTTGATTTTAAGGAAAATAACGTAAAGAAAAGATTTCCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCAT
* * * *
90185 GCAAAATAAAATCATCAATATCTTTTATCCTGAA-GAGGAGAAT-TGTTTATAGTACCTATTCAA
66 GCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCTAATCAC
* *** * * *
90248 AAAATGAAAAAAGAT-ATTTACTAGAATCCATACGTATCTCATTAGAGGCATGAACTTAGACTTT
130 AAAATGAATAAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* *
90312 ACAAAAATTGGTGTGAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATACGATGTATCCTAAT
194 ACAAAAATTGGTG-GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * * * * *
90377 AACAAGACCATGTTTACGCTGTCTAATCCT-AAAAGGAATGGGGATTAGTATGAGTATTCTTGTT
258 AAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAACGGGGATTAGTATGAGTATTCATGTT
* * **
90441 TGTCGTATTTAAGAGACAAACTTTAATTCTATCAAAAATAGTGGAAAAGAAAAGCTTTTCTTACG
322 TGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTACG
* * *
90506 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCCCAATCTTAAAA
386 ACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTCGCATCCCAATC-TAAAA
*
90571 AGAATAGAGACTATTACGAGAATCGA
450 AGAATGGAGACTATTACGAGAATCGA
* * * * *
90597 TGATTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAAAGCT-AAGAAAAGATTTCCA
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAAT-AAGGTAAAGAAAAGATTTCCA
* * * * *
90661 TTGTAAAAGAAAATCACCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATAA
65 -TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCA
* * *
90726 CTAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGCGAATTTAGACTTT
129 CAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
90791 ATAAAAATTGGGGGGAAGAAAGCCTTTCTTGCGAAACTAAAGCATCAA-ATCG-TGTATCCTAAT
194 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAAT
* * * *
90854 AAGAAGACTATGTTTATGGTACCTAATCCTGAAAAAAACGGGGATTATTATCAGTATTCATGTTT
258 AAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTT
* * *
90919 GTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC
323 GTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC
* * *
90984 ACCAAAGCATCAATATCAT-TCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAA
388 ACCAAAGCATCAATATCATGT-ATCCTAATGAAGGGAATGTGTTTTCGCATCCCAATC-TAAAAA
** *
91048 GAATGGAGACTGCTACAAGAATCGA
451 GAATGGAGACTATTACGAGAATCGA
* * * *
91073 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTATGGAAAATAGGGTAAAGAAAATATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCAT
* *
91138 GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACA
66 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACA
** * * * *
91203 AAATGAACGAAGATCTTTACTAGGATCCATGTTTGTGTCATTTGAGGCACGAACTTAGACTTTAG
131 AAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * * * *
91268 AAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATTCAAATGAG
196 AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAG
* * * *
91333 AAGACTATGTTTATGGTGTCTAATCTTGAAAGGAACAGGGATTAGTATGAGTATTCATGTTTGTC
261 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTC
* *
91398 ATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAA-AAAAGCTTTTCTT
326 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
91454 GCCACCCCAA
Statistics
Matches: 1142, Mismatches: 173, Indels: 39
0.84 0.13 0.03
Matches are distributed among these distances:
474 5 0.00
475 252 0.22
476 478 0.42
477 251 0.22
478 77 0.07
479 78 0.07
480 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACA
AAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAG
AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTC
ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACC
AAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTCGCATCCCAATCTAAAAAGAATG
GAGACTATTACGAGAATCGA
Found at i:91842 original size:395 final size:395
Alignment explanation
Indices: 91073--91848 Score: 1126
Period size: 395 Copynumber: 2.0 Consensus size: 395
91063 CAAGAATCGA
* * * *
91073 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTATGGAAAATAGGGTAAAGAAAATATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* *
91138 GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACA
66 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCACA
* * * * *
91203 AAATGAACGAAGATCTTTACTAGGATCCATGTTTGTGTCATTTGAGGCACGAACTTAGACTTTAG
131 AAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * * *
91268 AAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATTCAAATGAG
196 AAAAATTGGTAGGAAAAAAGCCTTTCCTACAAAACCAAAGCATCAATATGATCTATCCAAATGAG
* * * *
91333 AAGACTATGTTTATGGTGTCTAATCTTGAAAGGAACAGGGATTAGTATGAGTATTCATGTTTGTC
261 AAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
91398 ATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
326 ATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
91463 AACGT
391 AACGT
*
91468 GGCTTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * ** *
91533 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACC
66 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCA-C
* * *
91598 AAAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA
130 AAAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * *
91662 CAAAAATTGGTAGGAAAAAAGCCTTTCCTACGAAACCAAAGCGTCAATATGATGTATCCTAATGA
195 CAAAAATTGGTAGGAAAAAAGCCTTTCCTACAAAACCAAAGCATCAATATGATCTATCCAAATGA
* ** *
91727 GGAGACTACG-TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGT
260 GAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGT
* * * *
91791 CGTATTTAAGAGACAAACTTTGATTTTATCGAAAA-CGGTGGGAAGAAAAGCTTTTCTT
325 CATATTTAAGAGACAAACTTTGATTCTATC-AAAAGCGGT-GCAAAAAAAGCTTTTCTT
91849 ACGACACCAA
Statistics
Matches: 336, Mismatches: 42, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
394 80 0.24
395 251 0.75
396 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (395 bp):
GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCACA
AAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
AAAAATTGGTAGGAAAAAAGCCTTTCCTACAAAACCAAAGCATCAATATGATCTATCCAAATGAG
AAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
ATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
AACGT
Found at i:92070 original size:159 final size:157
Alignment explanation
Indices: 91468--92070 Score: 364
Period size: 159 Copynumber: 3.8 Consensus size: 157
91458 CCCCAAACGT
* * * *
91468 GGCTTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAGAGACGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCAT
* * * * * * ** * **
91533 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACC
66 ACAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCATG
* *
91598 AAAAGAATGAATAT-CATTACAAGAATCCA
131 AAAAGAATGGAGATGC--TACAAGAAT-CA
* * * * * ** * * * **
91627 TGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACA--AAAAT-TGGTAGGAA-AAAAGCCTTT
1 GGCTTGCCTTATTTAAGAGACGAACTTTGATTTTA-AGGAAAATAGGGTA--AAGAAAAGATTTT
* * * * * * ** * *
91688 CCTACGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAGACTACG-TTATGGTGCCTAATC
63 CATACAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATC
* * *** *
91752 CTGAAAAGAATGGGGATTAG-TTTGAGTATTCA
128 ATGAAAAGAATGGAGA-T-GCTACAAG-AATCA
* * * * * ** * ** * *
91784 TGTTTGTCGTATTTAAGAGACAAACTTTGATTTTATCGAAAA-CGGTGGGAAGAAAAGCTTTTCT
1 GGCTTGCCTTATTTAAGAGACGAACTTTGATTTTAAGGAAAATAGG-GTAAAGAAAAGATTTTCA
* * * * * * *
91848 TACGACACCAAAGCATCAATATCATGCATCCTAATGAAGG-GAATGTGTTT-TGGCATCCAAATC
65 TACAAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAGTA-CCTAATC
91911 ATGAAAAGAATGGAGACTGCTACAAGAATCGA
128 ATGAAAAGAATGGAGA-TGCTACAAGAATC-A
*
91943 GGCTTGCCTTATTTAA-AGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCA
1 GGCTTGCCTTATTTAAGA-GACGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCA
* * * * *
92007 TGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCA
65 TACAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCA
92071 CAAAATGAAC
Statistics
Matches: 325, Mismatches: 98, Indels: 42
0.70 0.21 0.09
Matches are distributed among these distances:
157 58 0.18
158 113 0.35
159 148 0.46
160 6 0.02
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (157 bp):
GGCTTGCCTTATTTAAGAGACGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCAT
ACAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCATG
AAAAGAATGGAGATGCTACAAGAATCA
Found at i:92712 original size:395 final size:395
Alignment explanation
Indices: 91943--92718 Score: 1171
Period size: 395 Copynumber: 2.0 Consensus size: 395
91933 CAAGAATCGA
* *
91943 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* *
92008 GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACA
66 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCACA
* * * *
92073 AAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAG
131 AAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * *
92138 AAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATTCAAATGAG
196 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGAG
* * *
92203 AAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
261 AAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
92268 ATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
326 ATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
92333 AACGT
391 AACGT
*
92338 GGCTTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * ** *
92403 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACC
66 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCA-C
* * *
92468 AAAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA
130 AAAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * *
92532 CAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGA
195 CAAAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGA
* ** *
92597 GGAGACTACG-TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGT
260 GAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGT
* * * *
92661 CGTATTTAAGAGACAAACTTTGATTTTATCGAAAA-CGGTGGGAAGAAAAGCTTTTCTT
325 CATATTTAAGAGACAAACTTTGATTCTATC-AAAAGCGGT-GCAAAAAAAGCTTTTCTT
92719 ACGACACCAA
Statistics
Matches: 341, Mismatches: 37, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
394 81 0.24
395 255 0.75
396 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (395 bp):
GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCACA
AAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
AAAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGAG
AAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
ATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
AACGT
Found at i:93051 original size:158 final size:158
Alignment explanation
Indices: 92387--93051 Score: 424
Period size: 158 Copynumber: 4.2 Consensus size: 158
92377 AAATAGGGCA
** ** * * *
92387 AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTT
1 AAGAAAAGCCTTTCATGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
* ** * * * * *
92452 ATACTGTCTAATGACCAAAAGAATGAATATC-ATTACAAGAATCCATGTTTGTCTCATTTGAGTC
66 ATAGTACCTAATCA-CAAAAGAATGAAGATCTGTTACAAGAATCCATGTTTGTCTCATTTAAG-G
* *
92516 ACGAACTTAGACTTTACAAAAATTGGTAGG
129 ACGAACTTAGACTTTAGAAAAATTGGTGGG
* * * * * **
92546 AA-AAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAGACTACG-TT
1 AAGAAAAGCCTTTCATGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
* * ** ** * *
92609 ATGGTGCCTAATC-CTGAAAAGAATGGGGAT-TAGTT-TGAGTATTCATGTTTGTCGT-ATTTAA
66 ATAGTACCTAATCAC--AAAAGAATGAAGATCT-GTTACAAGAATCCATGTTTGTC-TCATTTAA
* * * *
92670 GAGACAAACTTTGATTTTATCG-AAAA-CGGTGGG
127 G-GACGAACTTAGACTTTA--GAAAAATTGGTGGG
* * * * * *
92703 AAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATGCATCCTAATGAAGG-GAATGTGTT
1 AAGAAAAGCCTTTCATGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTT
* * * ** * * * * * * *
92767 T-TGGCATCCAAATCATGAAAGAATGGAGA-CTGCTACAAGAATCGAGGCTTGCCTTATTTAAAG
65 TATAGTA-CCTAATCACAAAAGAATGAAGATCTGTTACAAGAATCCATGTTTGTCTCATTT-AAG
* * * * * **
92830 GATGAACTTTGATTTTAAGGAAAATAGG-GTA
128 GACGAACTTAGACTTT-AGAAAAATTGGTGGG
** ** * * *
92861 AAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTT
1 AAGAAAAGCCTTTCATGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
* * * *
92926 ATAGTACCTAATCACAAAATGAACGAAGATCT-TTACTAGGATCCATGTTTGTCTCATTTGAGGC
66 ATAGTACCTAATCACAAAA-GAATGAAGATCTGTTACAAGAATCCATGTTTGTCTCATTTAAGG-
92990 ACGAACTTAGACTTTAGAAAAATTGGTGGG
129 ACGAACTTAGACTTTAGAAAAATTGGTGGG
* *
93020 AA-AAATGCCTTTCTTGCAAAACCAAAGCATCA
1 AAGAAAAGCCTTTCATGCAAAACCAAAGCATCA
93052 TTATGATCTA
Statistics
Matches: 375, Mismatches: 106, Indels: 51
0.70 0.20 0.10
Matches are distributed among these distances:
155 1 0.00
157 68 0.18
158 241 0.64
159 63 0.17
160 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (158 bp):
AAGAAAAGCCTTTCATGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
ATAGTACCTAATCACAAAAGAATGAAGATCTGTTACAAGAATCCATGTTTGTCTCATTTAAGGAC
GAACTTAGACTTTAGAAAAATTGGTGGG
Found at i:93336 original size:869 final size:870
Alignment explanation
Indices: 90600--95253 Score: 8695
Period size: 870 Copynumber: 5.3 Consensus size: 870
90590 GAATCGATGA
* ** * ** * * *
90600 TTGCCATATTTAAAAGATGAACTTTGATTTTAAGGAAAATAAAGCTAAGAAAAGATTTCCATTGT
1 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGC
* * * * * * *
90665 AAAAGAAAATCACCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATAACTAA
65 AAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAA
* * * * * * * *
90730 ATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGCGAATTTAGACTTTATAA
130 AAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAA
** * * * * * *
90795 AAATTGGGGGGAAGAAAGCCTTTCTTGCGAAACTAAAGCATCAA-ATCG-TGTATCCTAATAAGA
195 AAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATAT-GATGTATCCTAATGAGG
* * * * *
90858 AGACTATGTTTATGGTACCTAATCCTGAAAAAAACGGGGATTA-TTATCAGTATTCATGTTTGTC
259 AGACTACG-TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTT-TGAGTATTCATGTTTGTC
*
90922 GTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACC
322 GTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACC
*
90987 AAAGCATCAATATCATTCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAAT
387 AAAGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAAT
*
91052 GGAGACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTATGGAAAATA
452 GGAGACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATA
*
91117 GGGTAAAGAAAATATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATG
517 GGGTAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATG
*
91182 TGTTTATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTGTCATTTG
582 TGTTTATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTG
91247 AGGCACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATC
647 AGGCACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATC
*
91312 ATTATGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAGGAACAGGGATTA
712 ATTATGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTA
91377 GTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAA
777 GTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAA
91442 AAAGCTTTTCTTGCCACCCCAAACGTGGC
842 AAAGCTTTTCTTGCCACCCCAAACGTGGC
91471 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
1 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
91536 AAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAA
66 AAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAA
91601 AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
131 AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
*
91666 AATTGGTAGGAAAAAAGCCTTTCCTACGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
196 AATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
91731 ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCGTAT
261 ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCGTAT
91796 TTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAG
326 TTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAG
91861 CATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGGAG
391 CATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGGAG
91926 ACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGT
456 ACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGT
91991 AAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTT
521 AAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTT
92056 TATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGC
586 TATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGC
92121 ACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTA
651 ACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTA
92186 TGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTAT
716 TGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTAT
92251 GAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAG
781 GAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAG
92316 CTTTTCTTGCCACCCCAAACGTGGC
846 CTTTTCTTGCCACCCCAAACGTGGC
92341 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
1 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
92406 AAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAA
66 AAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAA
92471 AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
131 AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
92536 AATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
196 AATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
92601 ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCGTAT
261 ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCGTAT
92666 TTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAG
326 TTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAG
92731 CATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATG-AAAGAATGGAG
391 CATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGGAG
92795 ACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGT
456 ACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGT
92860 AAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTT
521 AAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTT
92925 TATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGC
586 TATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGC
92990 ACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTA
651 ACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTA
93055 TGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTAT
716 TGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTAT
*
93120 GAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAG
781 GAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAG
93185 CTTTTCTTGCCACCCCAAACGTGGC
846 CTTTTCTTGCCACCCCAAACGTGGC
*
93210 TTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
1 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
93275 AAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAA
66 AAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAA
93340 AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
131 AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
93405 AATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
196 AATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
93470 ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCGTAT
261 ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCGTAT
93535 TTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAG
326 TTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAG
93600 CATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGGAG
391 CATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGGAG
93665 ACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGT
456 ACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGT
93730 AAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTT
521 AAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTT
93795 TATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGC
586 TATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGC
93860 ACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTA
651 ACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTA
93925 TGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTAT
716 TGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTAT
93990 GAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAG
781 GAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAG
94055 CTTTTCTTGCCACCCCAAACGTGGC
846 CTTTTCTTGCCACCCCAAACGTGGC
94080 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
1 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
94145 AAAGAAAATCATCAATATCATTATATCCTATTGAGGAGAATGTGTTTATACGTGTCTAATGACCA
66 AAAGAAAATCATCAATATCATT-TATCCTATTGAGGAGAATGTGTTTATAC-TGTCTAATGACCA
94210 AAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACA
129 AAAGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACA
94275 AAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGG
194 AAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGG
*
94340 AGACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCTTGAGTATTCATGTTTGTCGT
259 AGACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCGT
*
94405 ATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAA
324 ATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAA
* *
94470 AGCATCAATATCATGCATCCTAATGAAGGGAATGTATTTTGGCATCCAAATCATTAAAAGAATGG
389 AGCATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGG
94535 AGACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGG
454 AGACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGG
*
94600 GCAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTG
519 GTAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTG
94665 TTTATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAG
584 TTTATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAG
* *
94730 GCACGAACTTAGACATTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAAGCAAAGCATCAT
649 GCACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAT
94795 TATGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGT
714 TATGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGT
*
94860 ATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAA
779 ATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAA
*
94925 AGCTTTTCTTGCAACCCCAAACGTGGC
844 AGCTTTTCTTGCCACCCCAAACGTGGC
94952 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
1 TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
* *
95017 AAAGAAAATCATCAATATCATATATCCTATTGAGGAGAATGTGTTTATAGTGTCTAATGACCAAA
66 AAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAA
95082 AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
131 AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
* *
95147 AATTGGTAGGAAAAAAGCCTTCCCTGGGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
196 AATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
95212 ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
261 ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
95254 GATGACAACC
Statistics
Matches: 3714, Mismatches: 63, Indels: 13
0.98 0.02 0.00
Matches are distributed among these distances:
869 867 0.23
870 1883 0.51
871 132 0.04
872 832 0.22
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (870 bp):
TTGCCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCA
AAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAA
AGAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAA
AATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGAGGAG
ACTACGTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCGTAT
TTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAG
CATCAATATCATGCATCCTAATGAAGGGAATGTGTTTTGGCATCCAAATCATGAAAAGAATGGAG
ACTGCTACAAGAATCGAGGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGT
AAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTT
TATAGTACCTAATCACAAAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGC
ACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTA
TGATCTATTCAAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTAT
GAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGTGCAAAAAAAG
CTTTTCTTGCCACCCCAAACGTGGC
Found at i:93581 original size:395 final size:395
Alignment explanation
Indices: 92812--93587 Score: 1187
Period size: 395 Copynumber: 2.0 Consensus size: 395
92802 CAAGAATCGA
* *
92812 GGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* *
92877 GCAAAATAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCACA
66 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCACA
* * * *
92942 AAATGAACGAAGATCTTTACTAGGATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAG
131 AAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * *
93007 AAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCATTATGATCTATTCAAATGAG
196 AAAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGAG
* * *
93072 AAGACTATGTTTATGGTGTCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
261 AAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
93137 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
326 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
93202 AACGT
391 AACGT
93207 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
1 GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * ** *
93272 GCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACC
66 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCA-C
* * *
93337 AAAA-GAATGAATATCATTACAAGAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA
130 AAAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * *
93401 CAAAAATTGGTAGGAAAAAAGCCTTTCCTGCGAAACCAAAGCGTCAATATGATGTATCCTAATGA
195 CAAAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGA
* ** *
93466 GGAGACTACG-TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGT
260 GAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGT
* * * * *
93530 CGTATTTAAGAGACAAACTTTGATTTTATCGAAAACGGTGGGAAGAAAAGCTTTTCTT
325 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GCAAAAAAAGCTTTTCTT
93588 ACGACACCAA
Statistics
Matches: 342, Mismatches: 37, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
394 85 0.25
395 252 0.74
396 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (395 bp):
GGCTTGCCTTATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATACTACCTAATCACA
AAATGAACGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
AAAAATTGGTAGGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAATATGATCTATCCAAATGAG
AAGACTACGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTC
ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAAAAAAGCTTTTCTTGCCACCCCA
AACGT
Found at i:93866 original size:159 final size:159
Alignment explanation
Indices: 93217--93867 Score: 416
Period size: 159 Copynumber: 4.1 Consensus size: 159
93207 GGCTTGCCTT
* * * *
93217 ATTTAAAGGATGAACTTTGATTGTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
1 ATTT-AAGGACGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAACAAA
* * * * ** *
93282 ATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATACTGTCTAATGACCAAAAGAATGA
65 AGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACCAAAAGAATGA
* *
93347 ATATC-ATTACAAGAATCCATGTTTGTCTC
130 AGATCTGTTACAAGAATCCATGTTTGTCTC
* * * * * ** * *
93376 ATTTGAGTCACGAACTTAGACTTTACA--AAAAT-TGGTAGGAA-AAAAGCCTTTCCTGCGAAAC
1 ATTTAAG-GACGAACTTTGATTTTA-AGGAAAATAGGGTA--AAGAAAAGATTTTCATGCAAAAC
* * * * ** * * *
93437 CAAAGCGTCAATATGATGTATCCTAATGAGGAGACTACG-TTATGGTGCCTAATC-CTGAAAAGA
62 AAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCAC-CAAAAGA
** ** * *
93500 ATGGGGAT-TAGTT-TGAGTATTCATGTTTGTCGT-
126 ATGAAGATCT-GTTACAAGAATCCATGTTTGTC-TC
* ** * ** * * * * * *
93533 ATTTAAGAGACAAACTTTGATTTTATCGAAAA-CGGTGGGAAGAAAAGCTTTTCTTACGACACCA
1 ATTTAAG-GACGAACTTTGATTTTAAGGAAAATAGG-GTAAAGAAAAGATTTTCATGCAAAACAA
* * * * **
93597 AAGCATCAATATCATGCATCCTAATGAAGG-GAATGTGTTT-TGGCATCCAAATCATGAAAAGAA
64 AAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAGTA-CCTAATCACCAAAAGAA
* * * * * * *
93660 TGGAGA-CTGCTACAAGAATCGAGGCTTGCCTT
127 TGAAGATCTGTTACAAGAATCCATGTTTGTCTC
* *
93692 ATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAATAAA
1 ATTT-AAGGACGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAACAAA
* * * *
93757 ATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCA-CAAAATGAACG
65 AGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACCAAAA-GAATG
* *
93821 AAGATCT-TTACTAGGATCCATGTTTGTCTC
129 AAGATCTGTTACAAGAATCCATGTTTGTCTC
*
93851 ATTTGAGGCACGAACTT
1 ATTTAAGG-ACGAACTT
93868 AGACTTTAGA
Statistics
Matches: 362, Mismatches: 103, Indels: 54
0.70 0.20 0.10
Matches are distributed among these distances:
156 1 0.00
157 60 0.17
158 120 0.33
159 170 0.47
160 11 0.03
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (159 bp):
ATTTAAGGACGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAACAAAA
GCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACCAAAAGAATGAA
GATCTGTTACAAGAATCCATGTTTGTCTC
Found at i:94738 original size:159 final size:158
Alignment explanation
Indices: 94087--94739 Score: 400
Period size: 159 Copynumber: 4.1 Consensus size: 158
94077 GGCTTGCCTT
* * *
94087 ATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAA
1 ATTTAA-GGACGAACTTTGATTTTAAGGAAAATAGGTGCAAAGAAAAGATTTTCATGCAAAACAA
* * * ** *
94151 AATCATCAATATCATTATATCCTATTGAGGAGAATGTGTTTATACGTGTCTAATGACCAAAAGAA
65 AAGCATCAATATCA-TGTATCCTAATGAGGAGAATGTGTTTATA-GTACCTAATCACCAAAAGAA
* *
94216 TGAATATCATTACAAGAATCCATGTTTGTCTC
128 TGAAGA-CTTTACAAGAATCCATGTTTGTCTC
* * * * * * ** * *
94248 ATTTGAGTCACGAACTTAGACTTTACA--AAAATTGGTAG-GAA-AAAAGCCTTTCCTGCGAAAC
1 ATTTAAG-GACGAACTTTGATTTTA-AGGAAAATAGGT-GCAAAGAAAAGATTTTCATGCAAAAC
* * * * ** * * *
94309 CAAAGCGTCAATATGATGTATCCTAATGAGGAGACTACG-TTATGGTGCCTAATC-CTGAAAAGA
63 AAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCAC-CAAAAGA
** * * *
94372 ATGGGGA--TTAGCTTGAGTATTCATGTTTGTCGT-
127 ATGAAGACTTTA-C--AAGAATCCATGTTTGTC-TC
* ** * * * * * * * *
94405 ATTTAAGAGACAAACTTTGATTTTATCGAAAA-CGGTGGAAAGAAAAGCTTTTCTTACGACACCA
1 ATTTAAG-GACGAACTTTGATTTTAAGGAAAATAGGTGCAAAGAAAAGATTTTCATGCAAAACAA
* * * * * **
94469 AAGCATCAATATCATGCATCCTAATGAAGG-GAATGTATTT-TGGCATCCAAATCATTAAAAGAA
65 AAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAGTA-CCTAATCACCAAAAGAA
* * * * * * *
94532 TGGAGACTGCTACAAGAATCGAGGCTTGCCTT
128 TGAAGACT-TTACAAGAATCCATGTTTGTCTC
* *
94564 ATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAATAA
1 ATTT-AAGGACGAACTTTGATTTTAAGGAAAATAGGTGCAAAGAAAAGATTTTCATGCAAAACAA
* * * *
94628 AATCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTACCTAATCA-CAAAATGAAC
65 AAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACCAAAA-GAAT
* *
94692 GAAGATCTTTACTAGGATCCATGTTTGTCTC
129 GAAGA-CTTTACAAGAATCCATGTTTGTCTC
*
94723 ATTTGAGGCACGAACTT
1 ATTTAAGG-ACGAACTT
94740 AGACATTAGA
Statistics
Matches: 364, Mismatches: 100, Indels: 58
0.70 0.19 0.11
Matches are distributed among these distances:
154 3 0.01
155 1 0.00
156 2 0.01
157 56 0.15
158 66 0.18
159 167 0.46
160 45 0.12
161 20 0.05
162 4 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (158 bp):
ATTTAAGGACGAACTTTGATTTTAAGGAAAATAGGTGCAAAGAAAAGATTTTCATGCAAAACAAA
AGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACCAAAAGAATGA
AGACTTTACAAGAATCCATGTTTGTCTC
Done.