Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1220

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2167
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35


Found at i:1666 original size:25 final size:25

Alignment explanation


    Indices: 1633--1684  Score: 79
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       1623 GATTTATTTC

                *                     
       1633 TTTATTTATTA-TTATTAAATATAAT
          1 TTTAATTATTATTTA-TAAATATAAT

                                     
       1658 TTTAATTATTATTTATAAATATAAT
          1 TTTAATTATTATTTATAAATATAAT

              
       1683 TT
          1 TT

       1685 AATAATTTAG


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  25   22  0.88
  26    3  0.12

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (25 bp):   
TTTAATTATTATTTATAAATATAAT
Done.