Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1221
Parameters: 2 7 7 80 10 50 1000
Length:  58094

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
604--644
11
3.6
11
90
3
64
34
0
0
65
0.93
1665--1790
54
2.4
54
83
4
157
25
18
25
30
1.98
3540--3638
51
2.0
49
84
4
126
25
3
8
63
1.36
3662--3695
11
3.0
12
87
12
54
32
0
0
67
0.91
3904--3973
29
2.4
30
83
7
90
52
0
0
47
1.00
7569--7623
27
2.0
27
100
0
110
29
7
21
41
1.80
7578--7631
27
2.2
24
80
12
56
35
7
18
38
1.79
7878--7912
15
2.3
15
90
0
52
88
11
0
0
0.51
7877--7912
16
2.2
16
90
0
54
88
11
0
0
0.50
11193--11222
2
15.0
2
100
0
60
50
0
0
50
1.00
11576--11636
30
2.0
30
96
0
113
13
19
9
57
1.63
14284--14319
11
3.2
11
88
4
54
30
0
0
69
0.89
18977--19071
22
4.6
22
64
21
62
31
0
27
41
1.56
19032--19083
22
2.4
22
90
0
77
34
1
23
40
1.66
20183--20276
48
2.0
48
89
4
145
36
18
18
27
1.94
22828--22962
68
2.0
68
98
0
261
38
28
7
25
1.83
31157--31202
20
2.3
20
84
0
56
32
4
52
10
1.56
35726--35771
20
2.3
20
84
0
56
32
4
52
10
1.56
37056--37190
54
2.5
54
76
8
130
20
14
30
35
1.92
37220--37271
14
3.6
14
76
5
50
30
0
1
67
1.02
37315--37361
15
3.1
15
79
14
51
72
0
0
27
0.85
37318--37362
22
2.0
22
86
0
63
75
0
0
24
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37318--37365
23
2.1
22
84
3
60
75
0
0
25
0.81
44265--44291
2
13.5
2
100
0
54
48
0
0
51
1.00
47324--47366
11
3.7
12
84
15
63
32
0
0
67
0.91
47305--47382
35
2.3
33
77
4
84
39
1
0
58
1.06
48388--48513
54
2.4
54
83
4
157
25
18
25
30
1.98
50265--50363
51
2.0
49
84
4
126
25
3
8
63
1.36
50387--50420
11
3.0
11
95
4
59
29
0
0
70
0.87
50629--50698
29
2.4
30
83
7
90
52
0
0
47
1.00
54293--54347
27
2.0
27
100
0
110
29
7
21
41
1.80
54302--54355
27
2.2
24
80
12
56
35
7
18
38
1.79
54603--54637
15
2.3
15
90
0
52
88
11
0
0
0.51
54602--54637
16
2.2
16
90
0
54
88
11
0
0
0.50

Tables:   1

The End!