Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1222
Parameters: 2 7 7 80 10 50 1000
Length:  48731

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4376--4420
16
2.8
16
82
0
54
26
6
6
60
1.47
14513--14540
11
2.5
11
100
0
56
17
7
42
32
1.77
15133--15168
2
18.0
2
100
0
72
50
0
0
50
1.00
16011--16041
14
2.2
14
94
0
53
67
0
0
32
0.91
16459--16491
2
16.5
2
100
0
66
51
0
0
48
1.00
16802--16832
2
15.5
2
100
0
62
51
0
0
48
1.00
18856--18898
2
21.0
2
81
13
52
44
4
0
51
1.22
19259--19317
27
2.2
26
81
3
73
30
1
3
64
1.20
21107--21151
2
22.5
2
82
8
56
46
0
6
46
1.29
21680--21989
153
2.0
153
92
3
527
42
7
6
43
1.57
22572--22617
23
2.0
23
82
0
56
47
0
0
52
1.00
25632--25669
18
2.1
18
90
0
58
63
5
7
23
1.42
29071--29106
18
2.0
18
100
0
72
61
5
5
27
1.41
32685--32716
2
16.0
2
100
0
64
50
0
0
50
1.00
33905--33934
2
15.0
2
92
0
51
50
3
0
46
1.18
34350--34436
24
3.7
24
74
10
90
48
4
32
14
1.65
34371--34439
23
3.0
21
73
18
75
47
2
31
17
1.62
34346--34439
47
2.0
47
100
0
188
46
4
31
17
1.67
35883--35916
2
17.5
2
87
6
52
47
2
0
50
1.16
36412--36465
22
2.4
22
81
9
65
42
3
1
51
1.30
36798--36832
16
2.1
18
89
10
56
71
0
0
28
0.86
36900--36929
11
2.7
11
94
0
51
56
16
10
16
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37985--38020
4
9.0
4
100
0
72
25
0
0
75
0.81
38695--38733
19
2.1
18
90
4
60
64
2
0
33
1.08
39746--39794
23
2.1
23
84
0
62
46
0
0
53
1.00
42547--42574
7
4.0
7
100
0
56
57
0
0
42
0.99
42650--42680
13
2.4
13
94
0
53
38
0
0
61
0.96
43165--43247
28
2.9
29
77
12
84
50
0
1
48
1.08
46560--46680
16
7.2
16
71
20
70
50
0
6
42
1.34
46603--46653
23
2.1
25
82
13
63
52
1
7
37
1.42
46628--46698
30
2.3
30
83
7
81
49
0
7
43
1.29
46732--46802
16
4.3
16
73
18
65
43
1
9
45
1.46
48155--48185
16
2.0
15
93
6
53
41
0
0
58
0.98

Tables:   1

The End!