Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1223
Parameters: 2 7 7 80 10 50 1000
Length:  62741

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
410--828
206
2.0
208
99
0
824
26
29
18
24
1.98
2274--2299
13
2.0
13
100
0
52
38
15
15
30
1.88
2256--2319
32
2.0
33
87
3
94
40
17
14
28
1.88
8224--8290
33
2.0
33
85
0
89
23
29
16
29
1.96
9228--9284
20
2.9
20
81
2
71
38
12
15
33
1.85
10935--11079
31
4.4
31
76
17
139
25
18
15
40
1.89
10994--11050
20
2.8
20
82
10
80
31
15
14
38
1.87
19162--19228
12
5.9
11
75
18
57
38
1
49
10
1.46
19182--19261
42
1.9
42
92
0
133
41
2
46
10
1.51
19152--19233
33
2.5
33
89
0
119
43
1
45
9
1.44
25093--25159
12
5.9
11
75
18
57
38
1
49
10
1.46
25113--25192
42
1.9
42
92
0
133
41
2
46
10
1.51
25083--25164
33
2.5
33
89
0
119
43
1
45
9
1.44
31097--31172
12
6.9
11
75
15
52
39
2
48
9
1.49
31096--31181
24
3.8
24
72
17
85
41
2
45
10
1.51
31087--31205
42
2.8
42
92
0
193
42
2
46
8
1.47
38971--39050
18
4.6
18
73
20
80
12
41
0
46
1.42
38984--39053
9
7.1
9
81
15
77
12
42
0
44
1.42
38998--39074
12
6.9
12
75
19
62
12
45
0
41
1.43
38956--39053
51
1.9
51
89
0
151
11
44
1
42
1.46
38989--39074
21
4.0
23
76
21
96
12
45
0
41
1.42
38984--39083
42
2.4
42
93
0
164
12
43
0
45
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39823--39867
23
1.9
24
90
4
74
4
20
4
71
1.21
46329--46369
21
2.0
21
85
9
57
19
21
0
58
1.39
48230--48254
11
2.3
11
100
0
50
0
8
28
64
1.22
49573--49612
19
2.2
19
95
4
73
17
5
15
62
1.49
52185--52232
21
2.3
21
81
0
60
43
16
14
25
1.86
59122--59193
28
2.6
28
74
14
76
12
22
8
56
1.62
62070--62108
15
2.6
15
79
0
51
82
2
12
2
0.89

Tables:   1

The End!