Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1224
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 474570
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
File 1 of 3
Found at i:2364 original size:13 final size:13
Alignment explanation
Indices: 2346--2371 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2336 TACACCAAGT
2346 ATGTATCGATACA
1 ATGTATCGATACA
2359 ATGTATCGATACA
1 ATGTATCGATACA
2372 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2369 original size:32 final size:33
Alignment explanation
Indices: 2328--2391 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2318 TAGCCAAACT
**
2328 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
2360 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
2392 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:7412 original size:13 final size:13
Alignment explanation
Indices: 7394--7419 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7384 TACACCAAGT
7394 ATGTATCGATACA
1 ATGTATCGATACA
7407 ATGTATCGATACA
1 ATGTATCGATACA
7420 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7417 original size:32 final size:33
Alignment explanation
Indices: 7376--7439 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
7366 TAGCCAAACT
**
7376 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
7408 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
7440 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:11043 original size:42 final size:42
Alignment explanation
Indices: 10988--11106 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
10978 TTCTTCTCTC
* *
10988 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
11030 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
11072 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
11107 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:11047 original size:12 final size:11
Alignment explanation
Indices: 11021--11096 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
11011 TCTATTATCT
*
11021 CTCCTGTCTCTC
1 CTCCTATCTC-C
11033 CTCCTATCATCC
1 CTCCTATC-TCC
11045 CTCCTATCT--
1 CTCCTATCTCC
*
11054 CTACTATCT--
1 CTCCTATCTCC
*
11063 CTCCTGTCTCTC
1 CTCCTATCTC-C
11075 CTCCTATCATCC
1 CTCCTATC-TCC
*
11087 CTCCTCTCTC
1 CTCCTATCTC
11097 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:11048 original size:24 final size:24
Alignment explanation
Indices: 11012--11097 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
11002 CCTCCTCTCT
* *
11012 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
11036 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
11057 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
11078 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
11098 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:11072 original size:18 final size:18
Alignment explanation
Indices: 11003--11073 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
10993 CCTGTCATCC
* *
11003 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
11021 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
11043 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
11063 CTCCTGTCTCT
1 CTCCTGTCTCT
11074 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:13462 original size:13 final size:13
Alignment explanation
Indices: 13444--13469 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13434 CAATTTTTTG
13444 TGTATCGATACAT
1 TGTATCGATACAT
13457 TGTATCGATACAT
1 TGTATCGATACAT
13470 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:13481 original size:32 final size:33
Alignment explanation
Indices: 13421--13487 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 33
13411 CGTTACAAGC
**
13421 CATTGTATCGATACAATTTTTTGTGTATCGATA
1 CATTGTATCGATACAATACTTTGTGTATCGATA
13454 CATTGTATCGATAC-ATACTTTGTGTATCGATA
1 CATTGTATCGATACAATACTTTGTGTATCGATA
13486 CA
1 CA
13488 AGTTTGGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (33 bp):
CATTGTATCGATACAATACTTTGTGTATCGATA
Found at i:14160 original size:40 final size:41
Alignment explanation
Indices: 14114--14204 Score: 107
Period size: 39 Copynumber: 2.3 Consensus size: 41
14104 TTTTCTTTCT
*
14114 CCCTTAACTAAAG-TAATTTTAACAAATTCGTACATTCTCC
1 CCCTTAACTAAAGATAATTTTAACAAATTCATACATTCTCC
* * *
14154 CCCTTAA-T-AAGATAATTTTAGCAAATTTATGCATTCTCC
1 CCCTTAACTAAAGATAATTTTAACAAATTCATACATTCTCC
* *
14193 CCTTTTACTAAA
1 CCCTTAACTAAA
14205 AAAAATCTCC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
38 3 0.07
39 29 0.69
40 8 0.19
41 2 0.05
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.37
Consensus pattern (41 bp):
CCCTTAACTAAAGATAATTTTAACAAATTCATACATTCTCC
Found at i:16059 original size:13 final size:13
Alignment explanation
Indices: 16041--16074 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
16031 ATAATCCCCC
16041 TGTATCGATACAG
1 TGTATCGATACAG
*
16054 TGTATCGATACAT
1 TGTATCGATACAG
16067 TGTATCGA
1 TGTATCGA
16075 AACAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:20015 original size:21 final size:23
Alignment explanation
Indices: 19989--20037 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 23
19979 ATGCAAGTTT
*
19989 TTATTTTTC-TTAGCTAAC-TCA
1 TTATTTTTCATTAGCCAACTTCA
20010 TTA-TTTTCATTAGCCAACTTCA
1 TTATTTTTCATTAGCCAACTTCA
20032 TTATTT
1 TTATTT
20038 CAACTTGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 5 0.21
21 11 0.46
22 6 0.25
23 2 0.08
ACGTcount: A:0.24, C:0.18, G:0.04, T:0.53
Consensus pattern (23 bp):
TTATTTTTCATTAGCCAACTTCA
Found at i:20039 original size:21 final size:21
Alignment explanation
Indices: 19993--20037 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
19983 AAGTTTTTAT
*
19993 TTTTC-TTAGCTAACTCATTA
1 TTTTCATTAGCCAACTCATTA
20013 TTTTCATTAGCCAACTTCATTA
1 TTTTCATTAGCCAAC-TCATTA
20035 TTT
1 TTT
20038 CAACTTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 8 0.36
22 9 0.41
ACGTcount: A:0.24, C:0.20, G:0.04, T:0.51
Consensus pattern (21 bp):
TTTTCATTAGCCAACTCATTA
Found at i:21639 original size:13 final size:13
Alignment explanation
Indices: 21621--21646 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21611 CAATTTTTTG
21621 TGTATCGATACAT
1 TGTATCGATACAT
21634 TGTATCGATACAT
1 TGTATCGATACAT
21647 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:21658 original size:32 final size:33
Alignment explanation
Indices: 21598--21664 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 33
21588 CGTTACAAGC
**
21598 CATTGTATCGATACAATTTTTTGTGTATCGATA
1 CATTGTATCGATACAATACTTTGTGTATCGATA
21631 CATTGTATCGATAC-ATACTTTGTGTATCGATA
1 CATTGTATCGATACAATACTTTGTGTATCGATA
21663 CA
1 CA
21665 AGTTTGGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (33 bp):
CATTGTATCGATACAATACTTTGTGTATCGATA
Found at i:28090 original size:14 final size:14
Alignment explanation
Indices: 28071--28111 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
28061 AAATGGCTTA
28071 AAATAAAATTAAAT
1 AAATAAAATTAAAT
*
28085 AAATAAAAATAAAT
1 AAATAAAATTAAAT
28099 AAACTAAAATTAA
1 AAA-TAAAATTAA
28112 TTTATATATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (14 bp):
AAATAAAATTAAAT
Found at i:28556 original size:15 final size:13
Alignment explanation
Indices: 28524--28562 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
28514 TCTTACATAC
28524 TTATTTAATTAAT
1 TTATTTAATTAAT
*
28537 TTATTTAGACTTATT
1 TTATTTA-A-TTAAT
28552 TTATTTAATTA
1 TTATTTAATTA
28563 TATTAGTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 10 0.43
14 2 0.09
15 11 0.48
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (13 bp):
TTATTTAATTAAT
Found at i:28667 original size:115 final size:113
Alignment explanation
Indices: 28459--28886 Score: 544
Period size: 115 Copynumber: 3.8 Consensus size: 113
28449 GGTAAGACCG
* * * *
28459 TAAATTATTTAATTTAAGG-CTAAGTCTTGT-AAAAATATATATTAGATAAAATAAGTCTTACAT
1 TAAATTATTTAATTTAAGGTC-AAGCCTTATAAAAAATATATATTAGATAAAATAGGTCTCACAT
* *
28522 ACTTATTTAATTAATTTATTTAGACTTATTTTATTTAATTATATTAGTTCA
65 GCTTATTTAATTAATTTATTTAG-CCTATTTTATTTAATTATATTAG-TCA
* * *
28573 TAAATTATTTAATTTAAGGTCAAGTCTTACAAAAAATATATATTAGATAAAATAGGTCTCATATG
1 TAAATTATTTAATTTAAGGTCAAGCCTTATAAAAAATATATATTAGATAAAATAGGTCTCACATG
28638 CTTATTTAATTAATTTATTTGAGCCTATTTTATTTAATTATATTAAGTCA
66 CTTATTTAATTAATTTATTT-AGCCTATTTTATTTAATTATATT-AGTCA
** *
28688 TAAATTATTTAATTTAAGACCAAGCCTTATAAAAAATATATATTAGATAAAATAGGTCTCACGTG
1 TAAATTATTTAATTTAAGGTCAAGCCTTATAAAAAATATATATTAGATAAAATAGGTCTCACATG
*
28753 CTTATTTAATTAATTTATTTATGCCTATTTTATTTAATTATATTTGGTCA
66 CTTATTTAATTAATTTATTTA-GCCTATTTTATTTAATTATA-TTAGTCA
* * * *
28803 TAAATTATTT-ATTCTAATGTTAAGCCGTATAAAAAATATACT-TTAGAT-AAATAGAGACT-AC
1 TAAATTATTTAATT-TAAGGTCAAGCCTTATAAAAAATATA-TATTAGATAAAATAG-GTCTCAC
* * *
28864 GTGCATACTTAATTAATTTATTT
63 ATGCTTATTTAATTAATTTATTT
28887 GGGGGCTAGT
Statistics
Matches: 283, Mismatches: 22, Indels: 18
0.88 0.07 0.06
Matches are distributed among these distances:
114 59 0.21
115 217 0.77
116 7 0.02
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (113 bp):
TAAATTATTTAATTTAAGGTCAAGCCTTATAAAAAATATATATTAGATAAAATAGGTCTCACATG
CTTATTTAATTAATTTATTTAGCCTATTTTATTTAATTATATTAGTCA
Found at i:37941 original size:52 final size:52
Alignment explanation
Indices: 37880--38258 Score: 348
Period size: 52 Copynumber: 7.2 Consensus size: 52
37870 CAAGGCCCAC
* * * * * *
37880 GACACTAGACTTAATGATGATAAAATTGCCAATGTGTTGTTTCAAGGTTAGT
1 GACATTAGACTTAAAGATGATAAAAGTGCCAATGTGCTGATTCAAGGCTAGT
* *** *
37932 GACATTAGACTTAAGGATGATGTGAGTGCCAATGTGCTGATTCAAGGTTAGT
1 GACATTAGACTTAAAGATGATAAAAGTGCCAATGTGCTGATTCAAGGCTAGT
* * *
37984 GACATTAGACTTCAAA-ATGATGAAAGGTGCCAATATGCTGATTCAAGGCTAGC
1 GACATTAGACTT-AAAGATGAT-AAAAGTGCCAATGTGCTGATTCAAGGCTAGT
* * * * * *
38037 GATATTGGACTTAAAGATGATGAAAGTGCTAATGTGCTAATTCAAGGCTAAT
1 GACATTAGACTTAAAGATGATAAAAGTGCCAATGTGCTGATTCAAGGCTAGT
* * * * *
38089 GACATTGGACTTAAAGATAATAAAAGGTGCTAATATGCTGATTCAAGGCCAGT
1 GACATTAGACTTAAAGATGATAAAA-GTGCCAATGTGCTGATTCAAGGCTAGT
* * * * * * *
38142 -ATATTGGATTTAAAGTTGATAAAAGGTGCCAATATTCTGATTCAAGGCCAGT
1 GACATTAGACTTAAAGATGATAAAA-GTGCCAATGTGCTGATTCAAGGCTAGT
* * ** * *
38194 GATATTGGACTTAAAGATGATAAGGGTGCTAATGTGCTGATTTAAGGCTAGT
1 GACATTAGACTTAAAGATGATAAAAGTGCCAATGTGCTGATTCAAGGCTAGT
**
38246 GGTATTAGACTTA
1 GACATTAGACTTA
38259 GAAAGTGATG
Statistics
Matches: 273, Mismatches: 49, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
52 189 0.69
53 84 0.31
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.31
Consensus pattern (52 bp):
GACATTAGACTTAAAGATGATAAAAGTGCCAATGTGCTGATTCAAGGCTAGT
Found at i:38065 original size:105 final size:104
Alignment explanation
Indices: 37887--38317 Score: 398
Period size: 105 Copynumber: 4.1 Consensus size: 104
37877 CACGACACTA
* ** * * * * * *
37887 GACTTAATGATGATAAAATTGCCAATGTGTTGTTTCAAGGTTAGTGACATTAGACTTAAGGATGA
1 GACTTAAAGATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTAGACTTAAAGATGA
** * *
37952 TGTGAGTGCCAATGTGCTGATTCAAGGTTAGTGACATTA
66 TGAAAGTGCCAATGTGCTGATTCAAGGCTAGTGACATTG
* *
37991 GACTTCAAA-ATGATGAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGAT
1 GACTT-AAAGATGAT-AAAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTAGACTTAAAGAT
* * *
38055 GATGAAAGTGCTAATGTGCTAATTCAAGGCTAATGACATTG
64 GATGAAAGTGCCAATGTGCTGATTCAAGGCTAGTGACATTG
* * * * * *
38096 GACTTAAAGATAATAAAAGGTGCTAATATGCTGATTCAAGGCCAGT-ATATTGGATTTAAAGTTG
1 GACTTAAAGATGAT-AAAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTAGACTTAAAGATG
* * * * *
38160 ATAAAAGGTGCCAATATTCTGATTCAAGGCCAGTGATATTG
65 ATGAAA-GTGCCAATGTGCTGATTCAAGGCTAGTGACATTG
* * * * *
38201 GACTTAAAGATGATAAGGGTGCTAATGTGCTGATTTAAGGCTAGTGGTATTAGACTTAGAAAGTG
1 GACTTAAAGATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTAGACTT--AAA--G
* * * *
38266 ATGGTTTGACAAGTGCTAATGTGTTGATTCAAGGCTAATGACATTG
62 AT-G-ATGA-AAGTGCCAATGTGCTGATTCAAGGCTAGTGACATTG
*
38312 GGCTTA
1 GACTTA
38318 CAAGGAGATG
Statistics
Matches: 263, Mismatches: 52, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
104 61 0.23
105 160 0.61
107 3 0.01
109 2 0.01
110 1 0.00
111 34 0.13
112 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (104 bp):
GACTTAAAGATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTAGACTTAAAGATGA
TGAAAGTGCCAATGTGCTGATTCAAGGCTAGTGACATTG
Found at i:38467 original size:31 final size:31
Alignment explanation
Indices: 38423--38547 Score: 124
Period size: 32 Copynumber: 3.9 Consensus size: 31
38413 AAAAAGGATG
* * *
38423 CCACCAACTTGTGTGGGCTTTCAAAGGGTTA
1 CCACCGACTTGTGTGAGCTTTAAAAGGGTTA
* *
38454 ACACCGACTTGTGTGAGCTTTTAAAAAGGATTA
1 CCACCGACTTGTGTGAGC-TTT-AAAAGGGTTA
* *
38487 CCACCGACTTGTGTAAGCTTTAAAAGGGGTTG
1 CCACCGACTTGTGTGAGCTTTAAAA-GGGTTA
* * *
38519 CCACTGACTTATGTGGGCTTTGAAAAGGG
1 CCACCGACTTGTGTGAGCTTT-AAAAGGG
38548 GTGCCACGGA
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
31 19 0.25
32 30 0.39
33 28 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (31 bp):
CCACCGACTTGTGTGAGCTTTAAAAGGGTTA
Found at i:38492 original size:33 final size:33
Alignment explanation
Indices: 38397--38544 Score: 117
Period size: 32 Copynumber: 4.6 Consensus size: 33
38387 CGCCCCACTA
* * *
38397 ACTTGTGTG-GGTTTTGAAAAAGGA-TGCCACCA
1 ACTTGTGTGAGCTTTT-AAAAAGGATTACCACCG
* * * *
38429 ACTTGTGTGGGC-TTT-CAAAGGGTTAACACCG
1 ACTTGTGTGAGCTTTTAAAAAGGATTACCACCG
38460 ACTTGTGTGAGCTTTTAAAAAGGATTACCACCG
1 ACTTGTGTGAGCTTTTAAAAAGGATTACCACCG
* * * * *
38493 ACTTGTGTAAGC-TTTAAAAGGGGTTGCCACTG
1 ACTTGTGTGAGCTTTTAAAAAGGATTACCACCG
* * *
38525 ACTTATGTGGGCTTTGAAAA
1 ACTTGTGTGAGCTTTTAAAA
38545 GGGGTGCCAC
Statistics
Matches: 92, Mismatches: 19, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
30 5 0.05
31 16 0.17
32 40 0.43
33 31 0.34
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (33 bp):
ACTTGTGTGAGCTTTTAAAAAGGATTACCACCG
Found at i:38528 original size:32 final size:32
Alignment explanation
Indices: 38421--38578 Score: 117
Period size: 32 Copynumber: 5.0 Consensus size: 32
38411 TGAAAAAGGA
* ** *
38421 TGCCACCAACTTGTGTGGGCTTTCAAA-GGGT
1 TGCCACCGACTTGTGTAAGCTTTAAAAGGGGT
** * * *
38452 TAACACCGACTTGTGTGAGCTTTTAAAAAGGAT
1 TGCCACCGACTTGTGTAAGC-TTTAAAAGGGGT
*
38485 TACCACCGACTTGTGTAAGCTTTAAAAGGGGT
1 TGCCACCGACTTGTGTAAGCTTTAAAAGGGGT
* * **
38517 TGCCACTGACTTATGTGGGCTTTGAAAAGGGG-
1 TGCCACCGACTTGTGTAAGCTTT-AAAAGGGGT
* * *
38549 TGCCACGGAGTTGT-CAA-CTTTAAAAGGGGT
1 TGCCACCGACTTGTGTAAGCTTTAAAAGGGGT
38579 GTCACGAAGT
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
29 8 0.08
30 4 0.04
31 16 0.16
32 45 0.44
33 29 0.28
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (32 bp):
TGCCACCGACTTGTGTAAGCTTTAAAAGGGGT
Found at i:38950 original size:117 final size:115
Alignment explanation
Indices: 38582--39070 Score: 354
Period size: 117 Copynumber: 4.2 Consensus size: 115
38572 AAGGGGTGTC
* * *
38582 ACGAAGTTATGGACTTTCAAAGGGTGCCACAGAGTTGTGGACTTTAATAGGGTGCCATAGAGTTA
1 ACGAAGTTGTGGACTTTGAAAGGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCATAGAGTTA
* * * * * *
38647 TCGACTTTGAGAAGGGGTACCATAAAGTTGTGGACTTT-GAAAAATGTGTCA
66 TGGACTTTGA-AAAGGGTGCCATAGAGTTGTGGACTTTAAAAAAAAGTG-CA
* ** * *
38698 TA-G-AGTTGTGGTCTCTAAAAAGGGGTGCCACAGAGTTGTGGACTTTAAGAAAAAGGTACCATA
1 -ACGAAGTTGTGGACT-TTGAAA-GGGTGCCACAGAGTTGTGGACTTT---AAAAGGGTGCCATA
* * * * * * *
38761 AAGTTATGGACTTTAAAAAAAGGTGTGGC--AGAGTTATGGATTTTAAGAAAGAA-TGCC
60 GAGTTATGGACTTT--GAAAAGG-GTGCCATAGAGTTGTGGACTTTAA-AAAAAAGTGCA
* * *
38818 AC-AGAGTTATAGACTTAGAAAGGGTGCCAC-GAAGTTGTGGACTTTAGAAAGAGG-GCCAT-GA
1 ACGA-AGTTGTGGACTTTGAAAGGGTGCCACAG-AGTTGTGGACTTTA-AAAG-GGTGCCATAG-
*
38879 AGTTGA-GGACTTTAGAAAAGGGTGCCATAGTGTTGTGGACTTTAAAAAAAAGTGCA
61 AGTT-ATGGACTTT-GAAAAGGGTGCCATAGAGTTGTGGACTTTAAAAAAAAGTGCA
*** * ** *
38935 ACGAAGTTGTGGACTTTGAAAATAATGCCACAAAGTTGTAAAGTTTAAAAGGGTGCCATAGAGTT
1 ACGAAGTTGTGGACTTTG-AAAGGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCATAGAGTT
* * * * *** *
39000 GTGAACTTT-AAAAGGGTGTCATAGAGTTGTGGACTTTGAAAAGGGGTGCC
65 ATGGACTTTGAAAAGGGTGCCATAGAGTTGTGGACTTTAAAAAAAAGTGCA
39050 ACGAAGTTGTGGACTTTGAAA
1 ACGAAGTTGTGGACTTTGAAA
39071 ATGGTGACAT
Statistics
Matches: 292, Mismatches: 53, Indels: 57
0.73 0.13 0.14
Matches are distributed among these distances:
114 3 0.01
115 65 0.22
116 20 0.07
117 92 0.32
118 26 0.09
119 23 0.08
120 41 0.14
121 14 0.05
122 8 0.03
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (115 bp):
ACGAAGTTGTGGACTTTGAAAGGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCATAGAGTTA
TGGACTTTGAAAAGGGTGCCATAGAGTTGTGGACTTTAAAAAAAAGTGCA
Found at i:39166 original size:30 final size:29
Alignment explanation
Indices: 38530--39187 Score: 341
Period size: 30 Copynumber: 22.4 Consensus size: 29
38520 CACTGACTTA
* * *
38530 TGTGGGCTTTGAAAAGGGGTGCCACGGAGT
1 TGTGGACTTT-AAAAAGGGTGCCACAGAGT
** * *
38560 TGTCAACTTTAAAAGGGGTGTCAC-GAAGT
1 TGTGGACTTTAAAAAGGGTGCCACAG-AGT
* *
38589 TATGGACTTT-CAAAGGGTGCCACAGAGT
1 TGTGGACTTTAAAAAGGGTGCCACAGAGT
* *
38617 TGTGGACTTT-AATAGGGTGCCATAGAGT
1 TGTGGACTTTAAAAAGGGTGCCACAGAGT
* * * * * * *
38645 TATCGACTTTGAGAAGGGGTACCATAAAGT
1 TGTGGACTTT-AAAAAGGGTGCCACAGAGT
* * *
38675 TGTGGACTTTGAAAAA-TGTGTCATAGAGT
1 TGTGGACTTT-AAAAAGGGTGCCACAGAGT
* *
38704 TGTGGTCTCTAAAAAGGGGTGCCACAGAGT
1 TGTGGACTTTAAAAA-GGGTGCCACAGAGT
* * * *
38734 TGTGGACTTTAAGAAAAAGGTACCATAAAGT
1 TGTGGACTTT-A-AAAAGGGTGCCACAGAGT
* * ***
38765 TATGGACTTTAAAAAAAGGTGTGGCAGAGT
1 TGTGGACTTT-AAAAAGGGTGCCACAGAGT
* * **
38795 TATGGATTTTAAGAAAGAATGCCACAGAGT
1 TGTGGACTTTAA-AAAGGGTGCCACAGAGT
* * *
38825 TATAGAC-TTAGAAAGGGTGCCAC-GAAGT
1 TGTGGACTTTAAAAAGGGTGCCACAG-AGT
* *
38853 TGTGGACTTTAGAAAGAGG-GCCA-TGAAGT
1 TGTGGACTTTAAAAAG-GGTGCCACAG-AGT
* * *
38882 TGAGGACTTTAGAAAAGGGTGCCATAGTGT
1 TGTGGACTTTA-AAAAGGGTGCCACAGAGT
** *
38912 TGTGGACTTTAAAAAAAAGTGCAAC-GAAGT
1 TGTGGACTTT-AAAAAGGGTGCCACAG-AGT
* *** *
38942 TGTGGACTTTGAAAATAATGCCACAAAGT
1 TGTGGACTTTAAAAAGGGTGCCACAGAGT
** * *
38971 TGTAAAGTTT-AAAAGGGTGCCATAGAGT
1 TGTGGACTTTAAAAAGGGTGCCACAGAGT
* * *
38999 TGTGAACTTT-AAAAGGGTGTCATAGAGT
1 TGTGGACTTTAAAAAGGGTGCCACAGAGT
*
39027 TGTGGACTTTGAAAAGGGGTGCCAC-GAAGT
1 TGTGGACTTT-AAAAAGGGTGCCACAG-AGT
* * * **
39057 TGTGGACTTTGAAAATGGTGACATGGAGT
1 TGTGGACTTTAAAAAGGGTGCCACAGAGT
* * * * * *
39086 TATGAACCTTGAGAAGGGGTGGCACAGAGT
1 TGTGGA-CTTTAAAAAGGGTGCCACAGAGT
* * * *
39116 TATAGATTTTAAGAAGGGGTGCCACAGAGT
1 TGTGGACTTTAA-AAAGGGTGCCACAGAGT
* *
39146 TATGGACTTTGAAAAAGGGTGCCACGGAGT
1 TGTGGACTTT-AAAAAGGGTGCCACAGAGT
**
39176 CATGGACTTTAA
1 TGTGGACTTTAA
39188 GAAAAGTGCC
Statistics
Matches: 485, Mismatches: 117, Indels: 53
0.74 0.18 0.08
Matches are distributed among these distances:
27 1 0.00
28 116 0.24
29 118 0.24
30 220 0.45
31 26 0.05
32 4 0.01
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.26
Consensus pattern (29 bp):
TGTGGACTTTAAAAAGGGTGCCACAGAGT
Found at i:39205 original size:29 final size:29
Alignment explanation
Indices: 39134--39207 Score: 71
Period size: 30 Copynumber: 2.5 Consensus size: 29
39124 TTAAGAAGGG
* *
39134 GTGCCACAGAGTTATGGACTTTGAAAAAGG
1 GTGCCACA-AGTCATGGACTTTGAAAAAGA
*
39164 GTGCCACGGAGTCATGGACTTT-AAGAAA-A
1 GTGCCAC-AAGTCATGGACTTTGAA-AAAGA
39193 GTGCCACTAAGTCAT
1 GTGCCAC-AAGTCAT
39208 CATTTTGAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
29 15 0.41
30 22 0.59
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (29 bp):
GTGCCACAAGTCATGGACTTTGAAAAAGA
Found at i:43032 original size:17 final size:17
Alignment explanation
Indices: 43010--43051 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
43000 CCATGAACTT
43010 TTTTATTTGAGCTTGCA
1 TTTTATTTGAGCTTGCA
43027 TTTTATTTGAGCTTGCA
1 TTTTATTTGAGCTTGCA
*
43044 TTTCATTT
1 TTTTATTT
43052 TGCTAACGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.12, G:0.14, T:0.57
Consensus pattern (17 bp):
TTTTATTTGAGCTTGCA
Found at i:47747 original size:13 final size:13
Alignment explanation
Indices: 47729--47756 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
47719 ATACAAAGAT
47729 CAATGTATCGATA
1 CAATGTATCGATA
47742 CAATGTATCGATA
1 CAATGTATCGATA
47755 CA
1 CA
47757 TTGAGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:47753 original size:33 final size:33
Alignment explanation
Indices: 47711--47776 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
47701 AAATTCCCAG
47711 ATGTATCGATACAAAGA-TCAATGTATCGATACA
1 ATGTATCGATACAAAGAGT-AATGTATCGATACA
**
47744 ATGTATCGATACATTGAGTAATGTATCGATACA
1 ATGTATCGATACAAAGAGTAATGTATCGATACA
47777 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGAGTAATGTATCGATACA
Found at i:50999 original size:21 final size:20
Alignment explanation
Indices: 50952--51005 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
50942 CATTTCTAGC
* *
50952 ATGTATTGATACATTCACTT
1 ATGTATCGATATATTCACTT
50972 ATGTATCGATATATTCACTT
1 ATGTATCGATATATTCACTT
* *
50992 CTTGTATCAATATA
1 -ATGTATCGATATA
51006 AATTGTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.44
Consensus pattern (20 bp):
ATGTATCGATATATTCACTT
Found at i:60652 original size:15 final size:15
Alignment explanation
Indices: 60634--60663 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
60624 TATTTATTAC
*
60634 AAAATATTAATATTT
1 AAAATAGTAATATTT
60649 AAAATAGTAATATTT
1 AAAATAGTAATATTT
60664 TAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
AAAATAGTAATATTT
Found at i:60766 original size:20 final size:20
Alignment explanation
Indices: 60743--60787 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
60733 TAAAATAATA
60743 ATTAT-ATTAATATTCAAAAT
1 ATTATAATTAATATT-AAAAT
*
60763 ATTATAATTATTATTAAAAT
1 ATTATAATTAATATTAAAAT
60783 ATTAT
1 ATTAT
60788 TCAAATACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTATAATTAATATTAAAAT
Found at i:63399 original size:28 final size:28
Alignment explanation
Indices: 63367--63425 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
63357 TTTTCATATT
63367 TTGAGATATAAAATCATTCTTAATCAAA
1 TTGAGATATAAAATCATTCTTAATCAAA
63395 TTGAGATATAAAATCATTCTTAATCAAA
1 TTGAGATATAAAATCATTCTTAATCAAA
63423 TTG
1 TTG
63426 TAAGTTAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.37
Consensus pattern (28 bp):
TTGAGATATAAAATCATTCTTAATCAAA
Found at i:72705 original size:32 final size:33
Alignment explanation
Indices: 72667--72745 Score: 115
Period size: 33 Copynumber: 2.4 Consensus size: 33
72657 TTCTAAAGCT
72667 GTTAACTTTGATCACAGAT-TTATACACTTTTA
1 GTTAACTTTGATCACAGATATTATACACTTTTA
* * *
72699 GTTAACTTTGATAATAGATATTATACATTTTTA
1 GTTAACTTTGATCACAGATATTATACACTTTTA
*
72732 ATTAACTTTGATCA
1 GTTAACTTTGATCA
72746 AATTTTTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 17 0.41
33 24 0.59
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (33 bp):
GTTAACTTTGATCACAGATATTATACACTTTTA
Found at i:74792 original size:20 final size:21
Alignment explanation
Indices: 74767--74847 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 21
74757 TGGTTGATAT
74767 AAAAT-TTTAATTTTTTTAAA
1 AAAATATTTAATTTTTTTAAA
*
74787 AAAATTATTTATTTGATTTTTAAA
1 AAAA-TATTTAATT--TTTTTAAA
*
74811 ATAAT-TGTTAATTTTTTT-AA
1 AAAATAT-TTAATTTTTTTAAA
*
74831 AAAATATATAATTTTTT
1 AAAATATTTAATTTTTT
74848 ATCTTGATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
20 19 0.38
21 7 0.14
22 7 0.14
23 6 0.12
24 11 0.22
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
AAAATATTTAATTTTTTTAAA
Found at i:74824 original size:24 final size:24
Alignment explanation
Indices: 74779--74824 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
74769 AATTTTAATT
*
74779 TTTTTAAAAAAATTATTTATTTGA
1 TTTTTAAAAAAATTATTAATTTGA
* *
74803 TTTTTAAAATAATTGTTAATTT
1 TTTTTAAAAAAATTATTAATTT
74825 TTTTAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTTAAAAAAATTATTAATTTGA
Found at i:75156 original size:24 final size:25
Alignment explanation
Indices: 75116--75170 Score: 78
Period size: 24 Copynumber: 2.2 Consensus size: 25
75106 GTAAAATATT
75116 AATAAATTTAAAATAATATG-ATAA
1 AATAAATTTAAAATAATATGTATAA
*
75140 AATAAA-TTAATATTAATATGTATAA
1 AATAAATTTAA-AATAATATGTATAA
75165 AATAAA
1 AATAAA
75171 AATAATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 4 0.14
24 14 0.50
25 10 0.36
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
AATAAATTTAAAATAATATGTATAA
Found at i:76713 original size:24 final size:23
Alignment explanation
Indices: 76664--76713 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
76654 AATAAATAAT
*
76664 TTTCTTATTTTAGTATTTTAATTA
1 TTTCTTATTTTA-TATATTAATTA
76688 TTTCTTTATTTT-TATATTAATATA
1 TTTC-TTATTTTATATATTAAT-TA
76712 TT
1 TT
76714 ATTTATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 8 0.35
24 8 0.35
25 7 0.30
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTCTTATTTTATATATTAATTA
Found at i:77327 original size:5 final size:5
Alignment explanation
Indices: 77317--77347 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
77307 TTTAATAACA
77317 AAATT AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT AAATT A
77348 GTGACCATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AAATT
Found at i:78990 original size:2 final size:2
Alignment explanation
Indices: 78983--79008 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
78973 TTAACATAAG
78983 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
79009 GATTTTGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79205 original size:2 final size:2
Alignment explanation
Indices: 79198--79254 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
79188 TATGCACGCT
79198 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79240 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
79255 TTGTGCGTGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:82974 original size:15 final size:15
Alignment explanation
Indices: 82928--83014 Score: 77
Period size: 16 Copynumber: 5.5 Consensus size: 15
82918 TTGAAAGCAA
82928 TTAAAATTAAAAAATAT
1 TTAAAATT--AAAATAT
* *
82945 TTCAAACTCAAAATAT
1 TT-AAAATTAAAATAT
82961 TTAAAATTAAAATAAT
1 TTAAAATTAAAAT-AT
*
82977 TT-AAATTCAAATTAT
1 TTAAAATT-AAAATAT
*
82992 TTAAATTTAAAATAAT
1 TTAAAATTAAAAT-AT
83008 TTAAAAT
1 TTAAAAT
83015 ATTTAAATAA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
15 22 0.39
16 29 0.51
17 2 0.04
18 4 0.07
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (15 bp):
TTAAAATTAAAATAT
Found at i:82987 original size:31 final size:31
Alignment explanation
Indices: 82928--83012 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
82918 TTGAAAGCAA
*
82928 TTAAAATTAAAAAATATTTCAAACTCAAAATAT
1 TTAAAATTAAAATA-ATTT-AAACTCAAAATAT
* *
82961 TTAAAATTAAAATAATTTAAATTCAAATTAT
1 TTAAAATTAAAATAATTTAAACTCAAAATAT
*
82992 TTAAATTTAAAATAATTTAAA
1 TTAAAATTAAAATAATTTAAA
83013 ATATTTAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 31 0.65
32 4 0.08
33 13 0.27
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (31 bp):
TTAAAATTAAAATAATTTAAACTCAAAATAT
Found at i:87465 original size:14 final size:14
Alignment explanation
Indices: 87446--87484 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
87436 TTATAGGCTT
87446 TAAACTAATTACCC
1 TAAACTAATTACCC
*
87460 TAAACTAATTACTC
1 TAAACTAATTACCC
87474 TAAACCTAATT
1 TAAA-CTAATT
87485 CCACATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAACTAATTACCC
Found at i:89488 original size:15 final size:15
Alignment explanation
Indices: 89468--89507 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
89458 AAATTGTTGG
89468 CACAAGAAAAAAAAC
1 CACAAGAAAAAAAAC
89483 CACAAGAAAAAAAAAC
1 CACAAG-AAAAAAAAC
89499 CA-AAGAAAA
1 CACAAGAAAA
89508 GGGAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.17
15 9 0.38
16 11 0.46
ACGTcount: A:0.75, C:0.17, G:0.07, T:0.00
Consensus pattern (15 bp):
CACAAGAAAAAAAAC
Found at i:89495 original size:16 final size:16
Alignment explanation
Indices: 89468--89507 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
89458 AAATTGTTGG
89468 CACAAG-AAAAAAAAC
1 CACAAGAAAAAAAAAC
89483 CACAAGAAAAAAAAAC
1 CACAAGAAAAAAAAAC
89499 CA-AAGAAAA
1 CACAAGAAAA
89508 GGGAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.75, C:0.17, G:0.07, T:0.00
Consensus pattern (16 bp):
CACAAGAAAAAAAAAC
Found at i:91907 original size:155 final size:155
Alignment explanation
Indices: 91248--91880 Score: 636
Period size: 155 Copynumber: 4.1 Consensus size: 155
91238 AAGTTCAAAA
* * * * * *
91248 AAAATTACAAAAATACC-CTATAGGTATACCTTTGACATAAAAGTACCCC-GATAACCTTAAAGG
1 AAAATTACAAAAATACCTCTATAGGTATACCTTCGACGTAAATGTACCCCAG-CAACCCTAAAAG
* * ** * * *** *
91311 AC-CAAAAAGACTAGAAAAGAATGAACCTATCCTAATTTCCCA-CTTCGGCATAAAAATGGACTC
65 ACTTAAAAAGACTAAAAAAGGGTGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCC
* ** * *
91374 GGTGACGACCTAGGAGTTGGTTTTAG
130 GATGATAACCTAGGACTCGGTTTTAG
* * * * *
91400 AAAAATTACGAAAATACC-CT-TAGGAGATACCTTCGACGTAAAAGTATCTCA--ATACCCTAAA
1 -AAAATTACAAAAATACCTCTATAGG-TATACCTTCGACGTAAATGTACCCCAGCA-ACCCTAAA
* * * * * *
91461 AGACTTAAAAATATTAGAAATGGTGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAACAA
63 AGACTTAAAAAGACTAAAAAAGG-G-TGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAG
** * *
91526 ACCTAATGATAACCTAGGACTTGGTTCTA-
126 ACCCGATGATAACCTAGGACTCGGTTTTAG
* * * *
91555 AGAAATTACGAAAATACCTCTCTAGGTATACCTGCGACGTAAATGTACCCTAGCAACCCTAAAAG
1 A-AAATTACAAAAATACCTCTATAGGTATACCTTCGACGTAAATGTACCCCAGCAACCCTAAAAG
* * * *
91620 ACTTAAAAAGACTAGAAAAGGGTGAACCTATCCTAAATACCTACCTTCGGCATAAAAGCAGATCC
65 ACTTAAAAAGACTAAAAAAGGGTGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCC
* *
91685 GATGATAACCTAGGACTCGATTTTAC
130 GATGATAACCTAGGACTCGGTTTTAG
* * * *
91711 AAAATTACAAAAATACCCCTATAGGTATACCTTCGACGTAAATGTACCCCGGCAACGCTAAAGGA
1 AAAATTACAAAAATACCTCTATAGGTATACCTTCGACGTAAATGTACCCCAGCAACCCTAAAAGA
*
91776 CTTAAAAAGACTAAAAAAGGGTGAACCTATCCTAAATGCCCACCTTCGGCATAAGAGCAGACCCG
66 CTTAAAAAGACTAAAAAAGGGTGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCCG
* * *
91841 GTGATAACTTAGGTCTCGGTTTTAGG
131 ATGATAACCTAGGACTCGGTTTTA-G
*
91867 AAAATTACTAAAAT
1 AAAATTACAAAAAT
91881 TTTCTTAGAA
Statistics
Matches: 401, Mismatches: 65, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
151 1 0.00
152 14 0.03
153 51 0.13
154 1 0.00
155 229 0.57
156 72 0.18
157 32 0.08
158 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.23
Consensus pattern (155 bp):
AAAATTACAAAAATACCTCTATAGGTATACCTTCGACGTAAATGTACCCCAGCAACCCTAAAAGA
CTTAAAAAGACTAAAAAAGGGTGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCCG
ATGATAACCTAGGACTCGGTTTTAG
Found at i:93809 original size:10 final size:9
Alignment explanation
Indices: 93790--93826 Score: 56
Period size: 10 Copynumber: 3.9 Consensus size: 9
93780 GCTAGCTTGG
93790 TTTTTTCTA
1 TTTTTTCTA
93799 TTTTTTCCTA
1 TTTTTT-CTA
93809 TTTTCTTCTA
1 TTTT-TTCTA
93819 TTTTTTCT
1 TTTTTTCT
93827 CTTGCTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 10 0.38
10 14 0.54
11 2 0.08
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTTCTA
Found at i:95015 original size:13 final size:13
Alignment explanation
Indices: 94997--95029 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
94987 CCGTGACAAG
94997 CAATGTATCGATA
1 CAATGTATCGATA
95010 CAATGTATCGATA
1 CAATGTATCGATA
95023 CAATGTA
1 CAATGTA
95030 CCATGTATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:95121 original size:19 final size:18
Alignment explanation
Indices: 95097--95161 Score: 77
Period size: 19 Copynumber: 3.8 Consensus size: 18
95087 AATTGTCCAT
95097 GTATCGATACAATGAATAA
1 GTATCGATACAATGAAT-A
95116 GTATCGATAC----AAT-
1 GTATCGATACAATGAATA
95129 GTATCGATACAATGAATA
1 GTATCGATACAATGAATA
95147 TGTATCGATACAATG
1 -GTATCGATACAATG
95162 TATCGATACA
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
13 10 0.25
15 3 0.08
17 3 0.08
19 24 0.60
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (18 bp):
GTATCGATACAATGAATA
Found at i:95134 original size:13 final size:13
Alignment explanation
Indices: 95116--95176 Score: 73
Period size: 13 Copynumber: 5.2 Consensus size: 13
95106 CAATGAATAA
95116 GTATCGATACAAT
1 GTATCGATACAAT
95129 GTATCGATACAAT
1 GTATCGATACAAT
95142 G-A---AT---AT
1 GTATCGATACAAT
95148 GTATCGATACAAT
1 GTATCGATACAAT
95161 GTATCGATACAAT
1 GTATCGATACAAT
95174 GTA
1 GTA
95177 CCATGTATCG
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
6 3 0.07
7 1 0.02
9 2 0.05
10 2 0.05
12 1 0.02
13 32 0.78
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.31
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:95136 original size:32 final size:32
Alignment explanation
Indices: 95095--95192 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
95085 ACAATTGTCC
*
95095 ATGTATCGATACAATGAATAAGTATCGATACA
1 ATGTATCGATACAATGAATATGTATCGATACA
95127 ATGTATCGATACAATGAATATGTATCGATACA
1 ATGTATCGATACAATGAATATGTATCGATACA
**
95159 ATGTATCGATACAATGTACCATGTATCGATACA
1 ATGTATCGATACAATG-AATATGTATCGATACA
95192 A
1 A
95193 ACAGTGGTAG
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 47 0.76
33 15 0.24
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (32 bp):
ATGTATCGATACAATGAATATGTATCGATACA
Found at i:95270 original size:147 final size:148
Alignment explanation
Indices: 94998--95304 Score: 562
Period size: 147 Copynumber: 2.1 Consensus size: 148
94988 CGTGACAAGC
*
94998 AATGTATCGATACAATGTATCGATACAATGTACCATGTATCGATACAAATAGTGGTAGGGTAGCT
1 AATGTATCGATACAATGTATCGATACAATGTACCATGTATCGATACAAACAGTGGTAGGGTAGCT
95063 ACTGCCAGTTTCATGTATCGATACAATTGTCCATGTATCGATACAATGAATAAGTATCGATACAA
66 ACTGCCAGTTTCATGTATCGATACAATTGTCCATGTATCGATACAATGAATAAGTATCGATACAA
*
95128 TGTATCGATACAATGAAT
131 TGTATCGATACAAAGAAT
95146 -ATGTATCGATACAATGTATCGATACAATGTACCATGTATCGATACAAACAGTGGTAGGGTAGCT
1 AATGTATCGATACAATGTATCGATACAATGTACCATGTATCGATACAAACAGTGGTAGGGTAGCT
* *
95210 ACTGCCAGTTTCATGTATCGATACAATTGTCCATGTATCGATACAATGAATATGTTTCGATACAA
66 ACTGCCAGTTTCATGTATCGATACAATTGTCCATGTATCGATACAATGAATAAGTATCGATACAA
*
95275 TGTATCGATACAAAGCAT
131 TGTATCGATACAAAGAAT
95293 AATGTATCGATA
1 AATGTATCGATA
95305 TATCTGGGTG
Statistics
Matches: 153, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
147 142 0.93
148 11 0.07
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (148 bp):
AATGTATCGATACAATGTATCGATACAATGTACCATGTATCGATACAAACAGTGGTAGGGTAGCT
ACTGCCAGTTTCATGTATCGATACAATTGTCCATGTATCGATACAATGAATAAGTATCGATACAA
TGTATCGATACAAAGAAT
Found at i:95886 original size:22 final size:22
Alignment explanation
Indices: 95846--95887 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
95836 AGGTAAACAT
* *
95846 ATTTCTCTCCTTTTATCAAAGC
1 ATTTCTCCCCCTTTATCAAAGC
*
95868 ATTTCTCCCCCTTTGTCAAA
1 ATTTCTCCCCCTTTATCAAA
95888 TATAAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.31, G:0.05, T:0.43
Consensus pattern (22 bp):
ATTTCTCCCCCTTTATCAAAGC
Found at i:104029 original size:19 final size:19
Alignment explanation
Indices: 103984--104039 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
103974 CTGCTAGTTT
**
103984 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
104004 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
* *
104023 TATGTATCGATATAATG
1 CATGTATCGATACAATG
104040 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:104753 original size:165 final size:165
Alignment explanation
Indices: 104564--105007 Score: 601
Period size: 165 Copynumber: 2.7 Consensus size: 165
104554 AAAAATGACG
* *
104564 ATTTCAAAGAAAAAATTCAAAAACTCATGAAGATGAGTGAATTTTTGAAAACTGAATTAATAT-A
1 ATTTCAAGGAAAAAATTCAAAAACTCATGAAGATGAATGAATTTTTGAAAACTGAATTAATATGA
* * **
104628 AATAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACCTTGAAAAATCCCCTGAAAAAAATT
66 AATAAATAATAATATTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTGAAAAAAATT
* * *
104693 GCAGAGTAAAAAACACCGTATTT-TGAAAAAAGAGA
131 ACAGAGT-AAAAACACCGTATTTCAGAAAAAAGAAA
* *
104728 ATTTCAAGGAAACAAATTCAAAAACTTATGAAAATGAATGAATTTTTGAAAACTGAA-TAATATG
1 ATTTCAAGGAAA-AAATTCAAAAACTCATGAAGATGAATGAATTTTTGAAAACTGAATTAATATG
* *
104792 AAATAAATGATAATATTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTTAAAAAAAT
65 AAATAAATAATAATATTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTGAAAAAAAT
* * *
104857 TACAGAGTGAAAACACTGTATTTCAGAAAAAGGAAA
130 TACAGAGTAAAAACACCGTATTTCAGAAAAAAGAAA
* * * * *
104893 ATTTCAAGGAAAAAA-TAAAAAACTCATG-AGAATGAATTAATTTTTAAAAATTGATTTAATATG
1 ATTTCAAGGAAAAAATTCAAAAACTCATGAAG-ATGAATGAATTTTTGAAAACTGAATTAATATG
* * **
104956 AAATAAATAATAATATTTGATGAATTTTAAATATTAAAAATTAAGAAAAATC
65 AAATAAATAATAATATTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATC
105008 TTTCTAAAAA
Statistics
Matches: 247, Mismatches: 28, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
162 1 0.00
163 31 0.13
164 87 0.35
165 128 0.52
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.29
Consensus pattern (165 bp):
ATTTCAAGGAAAAAATTCAAAAACTCATGAAGATGAATGAATTTTTGAAAACTGAATTAATATGA
AATAAATAATAATATTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTGAAAAAAATT
ACAGAGTAAAAACACCGTATTTCAGAAAAAAGAAA
Found at i:105071 original size:164 final size:163
Alignment explanation
Indices: 104564--105083 Score: 551
Period size: 165 Copynumber: 3.2 Consensus size: 163
104554 AAAAATGACG
* *
104564 ATTTCAAAGAAAAAATTCAAAAACTCATGAAGATGAGTGAATTTTTGAAAACTGAATTAATAT-A
1 ATTTCAAGGAAAAAATTCAAAAACTCATGAA-ATGAATGAATTTTTGAAAACTG-ATTAATATGA
* * * *
104628 AATAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACCTT--GAAAAATCCCCTGAAAAAAA
64 AATAAATAATAATATTTGATGAATTTTAAAAATT-AAAA-ATTAAGAAAAATCCCCTAAAAAAAA
* *
104691 TTGCAGAGTAA-AAAACACCG-TATTTTGAAAAAAG-AGA
127 TTACAGAG-AAGAAAACA-CGTTA-TTTGAAAAAGGAAGA
* *
104728 ATTTCAAGGAAACAAATTCAAAAACTTATGAAAATGAATGAATTTTTGAAAACTGAATAATATGA
1 ATTTCAAGGAAA-AAATTCAAAAACTCATG-AAATGAATGAATTTTTGAAAACTGATTAATATGA
* * ** *
104793 AATAAATGATAATATTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTTAAAAAAATT
64 AATAAATAATAATATTTGATGAATTTTAAAAATTAAAAATTAAGAAAAATCCCCTAAAAAAAATT
*
104858 ACAGAG-TGAAAACAC-TGTATTTCAGAAAAAGGAA-A
129 ACAGAGAAGAAAACACGT-TATTT--GAAAAAGGAAGA
* * * *
104893 ATTTCAAGGAAAAAA-TAAAAAACTCATGAGAATGAATTAATTTTTAAAAATTGATTTAATATGA
1 ATTTCAAGGAAAAAATTCAAAAACTCATGA-AATGAATGAATTTTTGAAAACTGA-TTAATATGA
* **
104957 AATAAATAATAATATTTGATGAATTTTAAATATTAAAAATTAAGAAAAATCTTTCTAAAAAAAAT
64 AATAAATAATAATATTTGATGAATTTTAAAAATTAAAAATTAAGAAAAATC-CCCTAAAAAAAAT
* *
105022 TATAGAGAAGAAAATCTCGTTATTTGAAAATAGGAAGA
128 TACAGAGAAGAAAA-CACGTTATTTGAAAA-AGGAAGA
* * *
105060 A-TT-AAGAAAAAAAATCAATAACTC
1 ATTTCAAGGAAAAAATTCAAAAACTC
105084 CAAAAATAAA
Statistics
Matches: 301, Mismatches: 35, Indels: 38
0.80 0.09 0.10
Matches are distributed among these distances:
162 1 0.00
163 36 0.12
164 86 0.29
165 145 0.48
166 23 0.08
167 9 0.03
168 1 0.00
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (163 bp):
ATTTCAAGGAAAAAATTCAAAAACTCATGAAATGAATGAATTTTTGAAAACTGATTAATATGAAA
TAAATAATAATATTTGATGAATTTTAAAAATTAAAAATTAAGAAAAATCCCCTAAAAAAAATTAC
AGAGAAGAAAACACGTTATTTGAAAAAGGAAGA
Found at i:108710 original size:13 final size:13
Alignment explanation
Indices: 108692--108716 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108682 CAATTCTTTA
108692 TGTATCGATACAT
1 TGTATCGATACAT
108705 TGTATCGATACA
1 TGTATCGATACA
108717 ATATGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:108876 original size:33 final size:32
Alignment explanation
Indices: 108787--108885 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 32
108777 ACATTTGTTC
* * * *
108787 ATGTATTGATACAATGAACATGTATAGATACA
1 ATGTATCGATACAAAGCACATGTATCGATACA
* *
108819 ATGTATCGATACAAAGCATAATGTATCGTTACA
1 ATGTATCGATACAAAGCA-CATGTATCGATACA
*
108852 TTGTATCGATACAATATGC-CATGTATCGATACA
1 ATGTATCGATACAA-A-GCACATGTATCGATACA
108885 A
1 A
108886 ATAGTGGTAG
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
32 15 0.28
33 36 0.67
34 1 0.02
35 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (32 bp):
ATGTATCGATACAAAGCACATGTATCGATACA
Found at i:108936 original size:148 final size:148
Alignment explanation
Indices: 108668--109000 Score: 612
Period size: 148 Copynumber: 2.2 Consensus size: 148
108658 GCCGTTTGAG
** * *
108668 ACAATGTATCGATACAATTCTTTATGTATCGATACATTGTATCGATACAATATGCCATGTATCGA
1 ACAATGTATCGATACAAAGCATAATGTATCGATACATTGTATCGATACAATATGCCATGTATCGA
*
108733 TACAAATAGTGGTAGGATAGCTACTACCAATTTCATGTATCGATACATTTGTTCATGTATTGATA
66 TACAAATAGTGGTAGGATAGCTACTACCAATTTCATGTATCGATACATTTGTTCATGTATCGATA
108798 CAATGAACATGTATAGAT
131 CAATGAACATGTATAGAT
*
108816 ACAATGTATCGATACAAAGCATAATGTATCGTTACATTGTATCGATACAATATGCCATGTATCGA
1 ACAATGTATCGATACAAAGCATAATGTATCGATACATTGTATCGATACAATATGCCATGTATCGA
108881 TACAAATAGTGGTAGGATAGCTACTACCAATTTCATGTATCGATACATTTGTTCATGTATCGATA
66 TACAAATAGTGGTAGGATAGCTACTACCAATTTCATGTATCGATACATTTGTTCATGTATCGATA
108946 CAATGAACATGTATAGAT
131 CAATGAACATGTATAGAT
108964 ACAATGTATCGATACAAAGCATAATGTATCGATACAT
1 ACAATGTATCGATACAAAGCATAATGTATCGATACAT
109001 CTGAAAGTGT
Statistics
Matches: 178, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
148 178 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (148 bp):
ACAATGTATCGATACAAAGCATAATGTATCGATACATTGTATCGATACAATATGCCATGTATCGA
TACAAATAGTGGTAGGATAGCTACTACCAATTTCATGTATCGATACATTTGTTCATGTATCGATA
CAATGAACATGTATAGAT
Found at i:108958 original size:19 final size:19
Alignment explanation
Indices: 108914--108969 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
108904 CTACCAATTT
* **
108914 CATGTATCGATACATTTGTT
1 CATGTATCGATACA-ATGAA
108934 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
108953 CATGTATAGATACAATG
1 CATGTATCGATACAATG
108970 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:109716 original size:12 final size:11
Alignment explanation
Indices: 109679--109742 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
109669 TTTATAATTA
109679 TTAATTTTAATT
1 TTAATTTT-ATT
**
109691 TTAATTTTCCT
1 TTAATTTTATT
*
109702 TTAATTTTGGTT
1 TTAATTTT-ATT
109714 TT-ATTTTATT
1 TTAATTTTATT
109724 TT-ATTTT-TT
1 TTAATTTTATT
*
109733 TTAGTTTTAT
1 TTAATTTTAT
109743 GAAAACTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
9 4 0.09
10 13 0.30
11 15 0.35
12 11 0.26
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72
Consensus pattern (11 bp):
TTAATTTTATT
Found at i:109721 original size:17 final size:17
Alignment explanation
Indices: 109682--109741 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
109672 ATAATTATTA
109682 ATTTTAATTTTAATTTT
1 ATTTTAATTTTAATTTT
** **
109699 CCTTTAATTTTGGTTTT
1 ATTTTAATTTTAATTTT
109716 ATTTT-ATTTT-ATTTT
1 ATTTTAATTTTAATTTT
*
109731 -TTTTAGTTTTA
1 ATTTTAATTTTA
109742 TGAAAACTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
14 4 0.12
15 8 0.24
16 5 0.15
17 16 0.48
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72
Consensus pattern (17 bp):
ATTTTAATTTTAATTTT
Found at i:118748 original size:33 final size:32
Alignment explanation
Indices: 118686--118748 Score: 74
Period size: 33 Copynumber: 1.9 Consensus size: 32
118676 TCAGACAATG
**
118686 TATCGATACAATTCTTCATGTATTGATACATTA
1 TATCGATACAATTC-TCATGTATCAATACATTA
118719 TATCGATACAATGTGC-CATGTATCAATACA
1 TATCGATACAAT-T-CTCATGTATCAATACA
118749 AATAATGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
33 24 0.92
34 1 0.04
35 1 0.04
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (32 bp):
TATCGATACAATTCTCATGTATCAATACATTA
Found at i:118922 original size:21 final size:21
Alignment explanation
Indices: 118896--118952 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
118886 AAAAATTCCA
118896 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
118917 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
118938 AATGTATCGATACAT
1 AATGTATCGATACAT
118953 CCTACAAGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:119032 original size:19 final size:19
Alignment explanation
Indices: 119008--119075 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
118998 AATTCAACAA
119008 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
119027 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
119042 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
119059 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
119076 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:119047 original size:13 final size:13
Alignment explanation
Indices: 119029--119053 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119019 ACATAAGTTT
119029 TGTATCGATACAA
1 TGTATCGATACAA
119042 TGTATCGATACA
1 TGTATCGATACA
119054 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:119051 original size:32 final size:32
Alignment explanation
Indices: 119010--119072 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
119000 TTCAACAATT
*
119010 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
119042 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
119073 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:119133 original size:13 final size:13
Alignment explanation
Indices: 119115--119140 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119105 CATTTTTCTG
119115 TGTATCGATACAT
1 TGTATCGATACAT
119128 TGTATCGATACAT
1 TGTATCGATACAT
119141 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:119137 original size:33 final size:33
Alignment explanation
Indices: 119095--119161 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
119085 GCCAAGGAAA
***
119095 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
119128 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
119161 T
1 T
119162 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:121624 original size:52 final size:52
Alignment explanation
Indices: 121505--121637 Score: 144
Period size: 52 Copynumber: 2.6 Consensus size: 52
121495 TTGAGTTTCT
* * * * *
121505 CAATTCTCCACAATCGGGGATATTCCAA-TCCCGGTTTTATTTTCAAAACGC
1 CAATTTTCCACAATCGGGGATACTCCAACTCCCGATTTTATTTCCAAAACAC
** *
121556 CAATTTTCCTTTAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAAATAC
1 CAATTTTCC-ACAATCGGGGATACTCCAACTCCCGATTTTATTTCC-AAAACAC
* *
121609 CAATTTTTCACAATCGAGGATACTCCAAC
1 CAATTTTCCACAATCGGGGATACTCCAAC
121638 CTCGTTATTT
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
51 8 0.12
52 45 0.67
53 14 0.21
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (52 bp):
CAATTTTCCACAATCGGGGATACTCCAACTCCCGATTTTATTTCCAAAACAC
Found at i:121657 original size:28 final size:28
Alignment explanation
Indices: 121621--121697 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
121611 ATTTTTCACA
* * *
121621 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
121649 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*
121677 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
121698 GCTTTATTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.98
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:121764 original size:107 final size:107
Alignment explanation
Indices: 121572--121776 Score: 252
Period size: 107 Copynumber: 1.9 Consensus size: 107
121562 TCCTTTAATC
* * *
121572 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
*
121637 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCTGA
66 CCCCGTTATTT-ATCGGGGATACTCCAACCCCGTTACTTCTGA
* * *** * * *
121680 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
*
121744 CCCCGTTATTT-TCGAAGGGATACTCCAATCCCG
66 CCCCGTTATTTATCG--GGGATACTCCAACCCCG
121777 ATTTTTTTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
105 3 0.04
107 58 0.71
108 21 0.26
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
CCCCGTTATTTATCGGGGATACTCCAACCCCGTTACTTCTGA
Found at i:125692 original size:13 final size:13
Alignment explanation
Indices: 125674--125698 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
125664 TACAATGAAC
125674 ATGTATCGATACA
1 ATGTATCGATACA
125687 ATGTATCGATAC
1 ATGTATCGATAC
125699 GAAGCATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:129303 original size:20 final size:19
Alignment explanation
Indices: 129256--129306 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
129246 TTGCCAGTTT
*
129256 CATGTATCGATACAATGAA
1 CATGTATCGATACAAAGAA
*
129275 CACGTATCGATACAAAGCATA
1 CATGTATCGATACAAAG-A-A
129296 -ATGTATCGATA
1 CATGTATCGATA
129307 TCGATACATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 15 0.56
20 11 0.41
21 1 0.04
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:129435 original size:21 final size:21
Alignment explanation
Indices: 129384--129438 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
129374 TTTTTACTTA
*
129384 AAAACATTTGATTTAAAGCTCG
1 AAAACATTT-ATTCAAAGCTCG
* *
129406 AAAGCATTTATTCATAA-CTCT
1 AAAACATTTATTCA-AAGCTCG
129427 AAAACATTTATT
1 AAAACATTTATT
129439 GATATTGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (21 bp):
AAAACATTTATTCAAAGCTCG
Found at i:130570 original size:164 final size:166
Alignment explanation
Indices: 130336--130698 Score: 475
Period size: 164 Copynumber: 2.2 Consensus size: 166
130326 CTTGTTTGCA
* * * *
130336 AAATAC-AGAGTTTTCTACTCCGTAAATATTTTTGGGAGATTTTTTCTTAGTTTTTAATTTTTAT
1 AAATACGA-AGTTTTCTATTCCATAAATATTTTTGGGAGATTTTATCTTAGTTTTTAATTTTTAA
* ** *
130400 AATTCATAAAATGTTATTTTTTAATTCATATTAAATCAGTTTTCAAAAATCTATTCATTCTCATG
65 AATTCATAAAATATTATCATTTAATCCATATTAAATCAGTTTTCAAAAATCTATTCATTCTCATG
* *
130465 AGTTTTTCATTTTTT-CTTCAAATTCTCCTATTTTTG
130 AGTTTTTCATTTTTTCCTTCAAATACCCCTATTTTTG
* *
130501 AAATACGAAGTTTTCTATTCTATAAATATTTTTAGGGGGATTTTAT-TT-GTTTTTAATTTTTAA
1 AAATACGAAGTTTTCTATTCCATAAATATTTTT-GGGAGATTTTATCTTAGTTTTTAATTTTTAA
* * * * *
130564 AATTCATCAAATATTATCATTTAATCCATATTAAATCAGTTTTGAAAAATGTATTTATTTTCATG
65 AATTCATAAAATATTATCATTTAATCCATATTAAATCAGTTTTCAAAAATCTATTCATTCTCATG
*
130629 AGTTTTTCATTTTTTCCCTTGAAATACCCCTATTTTTG
130 AGTTTTTCATTTTTT-CCTTCAAATACCCCTATTTTTG
* *
130667 AAAAACTGAA-TTTTCTATCCCATAAATATTTT
1 AAATAC-GAAGTTTTCTATTCCATAAATATTTT
130699 CGAGAGGATT
Statistics
Matches: 172, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
164 85 0.49
165 30 0.17
166 54 0.31
167 3 0.02
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.50
Consensus pattern (166 bp):
AAATACGAAGTTTTCTATTCCATAAATATTTTTGGGAGATTTTATCTTAGTTTTTAATTTTTAAA
ATTCATAAAATATTATCATTTAATCCATATTAAATCAGTTTTCAAAAATCTATTCATTCTCATGA
GTTTTTCATTTTTTCCTTCAAATACCCCTATTTTTG
Found at i:130971 original size:18 final size:18
Alignment explanation
Indices: 130950--131007 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
130940 GATGATATCG
130950 ATATTGATGATAGTGACA
1 ATATTGATGATAGTGACA
*
130968 ATATTGATGCTAGTGA-A
1 ATATTGATGATAGTGACA
* *
130985 GCTATTGATGATAGTGACG
1 -ATATTGATGATAGTGACA
131004 ATAT
1 ATAT
131008 CGATCGTGAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 1 0.03
18 32 0.97
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (18 bp):
ATATTGATGATAGTGACA
Found at i:131622 original size:19 final size:19
Alignment explanation
Indices: 131598--131638 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
131588 AATCTCATCG
131598 AAAATG-CATAAAAAATAGA
1 AAAATGTCATAAAAAAT-GA
*
131617 AAAATGTCATGAAAAATGA
1 AAAATGTCATAAAAAATGA
131636 AAA
1 AAA
131639 TAAAAAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (19 bp):
AAAATGTCATAAAAAATGA
Found at i:132223 original size:20 final size:21
Alignment explanation
Indices: 132185--132229 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
132175 TGATTCGCCG
*
132185 AATCTTGGAAGGGATTTTTGC
1 AATCTTAGAAGGGATTTTTGC
*
132206 AATCTTAGAGGGGATTTTTGC
1 AATCTTAGAAGGGATTTTTGC
132227 AAT
1 AAT
132230 GTTTTGTGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.27, T:0.38
Consensus pattern (21 bp):
AATCTTAGAAGGGATTTTTGC
Found at i:133654 original size:155 final size:155
Alignment explanation
Indices: 133409--134090 Score: 612
Period size: 155 Copynumber: 4.4 Consensus size: 155
133399 CTATACCAAA
* * * **
133409 TACTTCTACGTC-AAAGGTATCCCTTAGGGGTATTTTCATAATTTCTCT-AAATCTGAGTCCTAG
1 TACTTCTACGTCGAAA-GAATCCCCTAAGGGTATTTTTGTAATTT-TCTAAAATC-GAGTCCTAG
* * *
133472 GTTGTCACCGGGTCCACTTTTATGCCGAAGGTGGGTATTTAAGG-TATGTTCATCCCATTTAAAA
63 GTTGTCACCGAGTCCGCTTTTATGCCGAAGGTGGGTATTT-AGGATAGGTTCATCCCATTTAAAA
* * * *
133536 TCTTTTTTTAGTCTTTTAAAGGTATTAGG
127 TCCTTTTTAAGTCTTTTAGAGGTATTGGG
* *
133565 TATTTTTACGTCGAAAGAATCCCCTAAGGGTATTTTTGTAATTTTCTAAAATCGAGTCCTAGGTT
1 TACTTCTACGTCGAAAGAATCCCCTAAGGGTATTTTTGTAATTTTCTAAAATCGAGTCCTAGGTT
* ** * * *
133630 GCCACCGAGTTTGCTTTCATGCCGAAGGTAGGTATTTAGGGTAGGTTCATCCCATTTAAAATCCT
66 GTCACCGAGTCCGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATTTAAAATCCT
* *
133695 TTTTAAGTCTTTTAG-GTGTATCGAG
131 TTTTAAGTCTTTTAGAG-GTATTGGG
* * * * * * * * *
133720 TACTTTTATGTCGAAGGTATCCCTTATGGGTATTTTTGTAATTTTCTAGAA-CTAACTCCTAGGT
1 TACTTCTACGTCGAAAGAATCCCCTAAGGGTATTTTTGTAATTTTCTAAAATC-GAGTCCTAGGT
* * * * * * * **
133784 CGTCACCTAGTCCGCTTTTATACTGAAGATGGATATTTAGGATACGTTCATCCTTTTTAAAATCC
65 TGTCACCGAGTCCGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATTTAAAATCC
* *
133849 TTTTTAAGT-TCTTTAGGGGTATCGGG
130 TTTTTAAGTCT-TTTAGAGGTATTGGG
* * * ** * * * * * * *
133875 TACTTCTACATCGAAGGTATTACCTAGGGGCATCTTTGTAATTTT-TCAAAACCAACTCCTAAGT
1 TACTTCTACGTCGAAAGAATCCCCTAAGGGTATTTTTGTAATTTTCT-AAAATCGAGTCCTAGGT
* * * * * *
133939 TGTCACCGGGTCCGCTTTTATGTCGAAAGTGGGTATTTAGGATAGGTTCATCTCATCTATAAT-C
65 TGTCACCGAGTCCGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATTTAAAATCC
*
134003 TTTTTAAGTCTTTTAGGGGTATTGGG
130 TTTTTAAGTCTTTTAGAGGTATTGGG
* * * * *
134029 TACTTCTACGTC-AAAGATATCCTCTAAGGGCA-TTTCGTAATTTT-TAGAATCGAGTCTTAGGT
1 TACTTCTACGTCGAAAGA-ATCCCCTAAGGGTATTTTTGTAATTTTCTAAAATCGAGTCCTAGGT
134091 CATCACTCTT
Statistics
Matches: 427, Mismatches: 88, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
152 11 0.03
153 14 0.03
154 52 0.12
155 307 0.72
156 40 0.09
157 3 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (155 bp):
TACTTCTACGTCGAAAGAATCCCCTAAGGGTATTTTTGTAATTTTCTAAAATCGAGTCCTAGGTT
GTCACCGAGTCCGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATTTAAAATCCT
TTTTAAGTCTTTTAGAGGTATTGGG
Found at i:136111 original size:20 final size:19
Alignment explanation
Indices: 136086--136157 Score: 87
Period size: 17 Copynumber: 3.9 Consensus size: 19
136076 TTGCCAGTTT
**
136086 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
*
136106 CATGTATCGATATAATGAA
1 CATGTATCGATACAATGAA
136125 CATGTATCGAT--AATGAA
1 CATGTATCGATACAATGAA
136142 CATGTATCGATA-AATG
1 CATGTATCGATACAATG
136158 CATCGATACA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
17 17 0.35
18 4 0.08
19 13 0.27
20 14 0.29
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:136932 original size:21 final size:21
Alignment explanation
Indices: 136906--136964 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
136896 ATCCCTAAAA
*
136906 ATGCATTCATATATTCATACT
1 ATGCATACATATATTCATACT
136927 ATGCATACATATATT-ATA-T
1 ATGCATACATATATTCATACT
*
136946 A--CATACATATATACATACT
1 ATGCATACATATATTCATACT
136965 CATACATAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 11 0.32
18 3 0.09
19 3 0.09
20 3 0.09
21 14 0.41
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.39
Consensus pattern (21 bp):
ATGCATACATATATTCATACT
Found at i:143613 original size:78 final size:78
Alignment explanation
Indices: 143466--143668 Score: 237
Period size: 78 Copynumber: 2.6 Consensus size: 78
143456 CGTTAATCAT
* * * *
143466 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGCTTTATTCCCAAAATATT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTATTCCCAAAATATC
* *
143531 GATTTCTCATAAT
66 GATTTCTCACAAC
* * * ** *
143544 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTC-TAATCAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTATTCCCAAAAT-AT
143608 CGATTTCTCACAAC
65 CGATTTCTCACAAC
* * * * *
143622 CGGGGATACTCTAGCCCCGTTATTTTCAAGGGAACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
143669 TTATTATCTC
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
77 3 0.03
78 102 0.97
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (78 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTATTCCCAAAATATC
GATTTCTCACAAC
Found at i:149588 original size:11 final size:11
Alignment explanation
Indices: 149572--149597 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
149562 AGCTAAATTG
149572 TTGATTTGGTT
1 TTGATTTGGTT
149583 TTGATTTGGTT
1 TTGATTTGGTT
149594 TTGA
1 TTGA
149598 GTTGATTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.12, C:0.00, G:0.27, T:0.62
Consensus pattern (11 bp):
TTGATTTGGTT
Found at i:150401 original size:141 final size:141
Alignment explanation
Indices: 150056--150459 Score: 614
Period size: 141 Copynumber: 2.9 Consensus size: 141
150046 ATTTTATCAC
* *
150056 TAAATAAAAATTATTATTTTAATTTTTTAAGATTTCTAATATTCCTATGG-TTTTCGATAGGGGT
1 TAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTTCG-TAGGGGT
* * *
150120 ATAGAAATCTTCAAAACTTTTTGTATCTTTTTGGTTCTCCATTAAGGTACAAAATGAAGTTTTTG
65 ATAGAAATCTTCAAAAC-TTTTATATCTTTTCGGTTCTCCATTAAGGTACGAAATGAAGTTTTTG
150185 GAAATTAAAAAAT
129 GAAATTAAAAAAT
*
150198 TAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTTCATAGGGGTA
1 TAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTTCGTAGGGGTA
* * * * *
150263 TTGAAATCTTCAAAACTTTTCATATCTTTTCGGTTCTCTATTAAGGTGCGAAATTAATTTTTTGG
66 TAGAAATCTTCAAAACTTTT-ATATCTTTTCGGTTCTCCATTAAGGTACGAAATGAAGTTTTTGG
*
150328 AAATT-AAAATT
130 AAATTAAAAAAT
*
150339 TAAATAGAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTTCGTAGGGGTA
1 TAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTTCGTAGGGGTA
* * *
150404 TAAAAATTTTCAAAACATTTAGTATCTTTTCGGTTCTCCATTAAGGTACGAAATGA
66 TAGAAATCTTCAAAACTTTTA-TATCTTTTCGGTTCTCCATTAAGGTACGAAATGA
150460 GATTTTCAAA
Statistics
Matches: 238, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
140 1 0.00
141 119 0.50
142 113 0.47
143 5 0.02
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (141 bp):
TAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTTCGTAGGGGTA
TAGAAATCTTCAAAACTTTTATATCTTTTCGGTTCTCCATTAAGGTACGAAATGAAGTTTTTGGA
AATTAAAAAAT
Found at i:152271 original size:13 final size:13
Alignment explanation
Indices: 152253--152282 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
152243 ACAATTATTC
*
152253 ATGTATTGATACA
1 ATGTATCGATACA
152266 ATGTATCGATACA
1 ATGTATCGATACA
152279 ATGT
1 ATGT
152283 CTTATATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:152297 original size:33 final size:33
Alignment explanation
Indices: 152232--152298 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
152222 CGTTGGGCAT
* *
152232 AATGTATCGATACAATTATTCATGTATTGATAC
1 AATGTATCGATACAATTATTCATATATCGATAC
*
152265 AATGTATCGATACAATGTCTT-ATATATCGATAC
1 AATGTATCGATACAAT-TATTCATATATCGATAC
152298 A
1 A
152299 TTTCACTTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 27 0.90
34 3 0.10
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.37
Consensus pattern (33 bp):
AATGTATCGATACAATTATTCATATATCGATAC
Found at i:152370 original size:19 final size:19
Alignment explanation
Indices: 152327--152382 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
152317 CTACTAGTTT
152327 CATGTATCGATACAATTGAG
1 CATGTATCGATACAA-TGAG
* *
152347 TATGTATAGATACAATGAG
1 CATGTATCGATACAATGAG
152366 CATGTATCGATACAATG
1 CATGTATCGATACAATG
152383 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:152385 original size:13 final size:13
Alignment explanation
Indices: 152367--152393 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
152357 TACAATGAGC
152367 ATGTATCGATACA
1 ATGTATCGATACA
152380 ATGTATCGATACA
1 ATGTATCGATACA
152393 A
1 A
152394 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:159457 original size:12 final size:12
Alignment explanation
Indices: 159440--159470 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
159430 CAAGTCAACC
159440 TCATCATTATCA
1 TCATCATTATCA
159452 TCATCATTATCA
1 TCATCATTATCA
*
159464 TCTTCAT
1 TCATCAT
159471 CATCTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (12 bp):
TCATCATTATCA
Found at i:161171 original size:20 final size:19
Alignment explanation
Indices: 161146--161216 Score: 79
Period size: 20 Copynumber: 3.6 Consensus size: 19
161136 TGCCAGTTTC
161146 ATGTATCAATACAGTTGAGT
1 ATGTATCAATACA-TTGAGT
* * *
161166 ATGTATCGATACAATGAGC
1 ATGTATCAATACATTGAGT
*
161185 ATGTATCAATACATCTGGGT
1 ATGTATCAATACAT-TGAGT
*
161205 GTGTATCAATAC
1 ATGTATCAATAC
161217 TTTCTAGGGT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 16 0.38
20 26 0.62
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (19 bp):
ATGTATCAATACATTGAGT
Found at i:161188 original size:19 final size:20
Alignment explanation
Indices: 161145--161197 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
161135 CTGCCAGTTT
*
161145 CATGTATCAATACAGTTGAG
1 CATGTATCAATACAGATGAG
* *
161165 TATGTATCGATACA-ATGAG
1 CATGTATCAATACAGATGAG
161184 CATGTATCAATACA
1 CATGTATCAATACA
161198 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (20 bp):
CATGTATCAATACAGATGAG
Found at i:163127 original size:27 final size:26
Alignment explanation
Indices: 163089--163139 Score: 93
Period size: 27 Copynumber: 1.9 Consensus size: 26
163079 AAAGCAAATA
163089 ATAAGACTGGGCTATTTTTGGACAACC
1 ATAAGACTGGGCTA-TTTTGGACAACC
163116 ATAAGACTGGGCTATTTTGGACAA
1 ATAAGACTGGGCTATTTTGGACAA
163140 AATGGTGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
ATAAGACTGGGCTATTTTGGACAACC
Found at i:163671 original size:16 final size:18
Alignment explanation
Indices: 163650--163691 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
163640 AGGTAGTGTC
*
163650 AAAAAAATGAAAAC-AT-
1 AAAAAAATAAAAACAATG
163666 AAAAAAATAAAAACAATG
1 AAAAAAATAAAAACAATG
163684 AAAAAAAT
1 AAAAAAAT
163692 CAGATGAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 13 0.57
17 2 0.09
18 8 0.35
ACGTcount: A:0.79, C:0.05, G:0.05, T:0.12
Consensus pattern (18 bp):
AAAAAAATAAAAACAATG
Found at i:165163 original size:73 final size:74
Alignment explanation
Indices: 165084--165220 Score: 186
Period size: 74 Copynumber: 1.9 Consensus size: 74
165074 TGACCAATTC
** *
165084 TTTTTTTACTTAGATTCTACCTTGGTTTC-CTTTGTTGGTTCGTATGGTTTCCTCCTAGCCAACA
1 TTTTTTTACTTAGATTCTACCTTGGTCACACTTTGTTGGTTCGTATGGTTTCCTCCCAGCCAACA
165148 TTGTTTTTT
66 TTGTTTTTT
* * ** * *
165157 TTTTTTTACTTAGGTTTTGTCTTGGTCACATTTTGTTGGTTCGTATGGTTTCGTCCCAGCCAAC
1 TTTTTTTACTTAGATTCTACCTTGGTCACACTTTGTTGGTTCGTATGGTTTCCTCCCAGCCAAC
165221 TCTTTTTCAA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
73 23 0.43
74 31 0.57
ACGTcount: A:0.12, C:0.19, G:0.18, T:0.51
Consensus pattern (74 bp):
TTTTTTTACTTAGATTCTACCTTGGTCACACTTTGTTGGTTCGTATGGTTTCCTCCCAGCCAACA
TTGTTTTTT
Found at i:165234 original size:66 final size:66
Alignment explanation
Indices: 165164--165921 Score: 447
Period size: 66 Copynumber: 11.6 Consensus size: 66
165154 TTTTTTTTTT
* * * * *
165164 ACTTAGGTTTTGTCTTGGTCACATTTTGTTGGTTCGTATGGTTTCGTCCCAGCCAACTCTTTTTC
1 ACTTAGGTTTTGCCTTAGTCACCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTTTC
*
165229 A
66 G
* * * * * * * *
165230 ACTTAGGTTTTACCTT-GATCACCTTTTGTTGGTTTGCATGGTTTTATCCCAACCAATTTTTTTT
1 ACTTAGGTTTTGCCTTAG-TCACCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTTT
*
165294 CA
65 CG
*** ** * * * * *
165296 ACTT---TTCCACCCCAATCATCTTTT-TT-TTTCATATGGTTTCATCCCAGCTAACTCCTTTTC
1 ACTTAGGTTTTGCCTTAGTCACCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTTTC
*
165356 A
66 G
* * * * *
165357 ACTTAGCTTTTACCTTGGTCAACC-TTTGTTGGTTCGTATGGTTTCATACTAGCTAACTAC-TTT
1 ACTTAGGTTTTGCCTTAGTC-ACCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACT-CTTTT
165420 TCG
64 TCG
* * * * *** *
165423 ACTT---TTTCGCCTTAATCATCCTTTTTTTCGTTCACGTGGTTTCATCCAAGCTAACTCTTTTT
1 ACTTAGGTTTTGCCTTAGTCA-CCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTTT
*
165485 TG
65 CG
* * * * * ** *
165487 ACTTAGGTTATGCCCTGGTTACCCTTTGTTGGTTTATATGGTTTCATCCTAGCTAACTCCTTTTT
1 ACTTAGGTTTTGCCTTAGTCACCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACT-C-TTTT
165552 TC-
64 TCG
* * * * * * *
165554 -CCTAGGTTCTGACTTAGTTAGCC-TTTGTTGGTTCATATGGTTTCATCCCGGCTAACTCCTTTT
1 ACTTAGGTTTTGCCTTAGTCA-CCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTTT
165617 CG
65 CG
* * * * * * * * * *
165619 ACTTAAGTTTCGCCCTGGTCACCCTTTGTTGGTTTGTATGTTTTCATCCTAGCCAA-TCCCTTTT
1 ACTTAGGTTTTGCCTTAGTCACCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACT-CTTTTT
*
165683 CA
65 CG
* * * * * *
165685 ACTTAAGTTTTGCCCTAGTCACCTTTTGTTGGTTTGTATGGTTTCATCCCCGCCAACTCCTTTTC
1 ACTTAGGTTTTGCCTTAGTCACCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTTTC
165750 G
66 G
* * * * * * ***
165751 ACTTAAGTTCT-ACTCTAGTTA-CTCTTTATTGATT-GTATGGTTTCATCTTGGCTAACTCTTTT
1 ACTTAGGTTTTGCCT-TAGTCACCT-TTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTT
**
165813 TTT
64 TCG
** * * ** * *
165816 ACTTAGGTTTTGCCCAAGTCA-CTCTTTGTTGGTTTGCATGGTTTTGTCCCGGCCAACTCTTTTT
1 ACTTAGGTTTTGCCTTAGTCACCT-TTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTTT
165880 CG
65 CG
* *
165882 ACCTAGGTTTCGCCTTAGTCACCTTTTGTTGGTTCGTATG
1 ACTTAGGTTTTGCCTTAGTCACCTTTTGTTGGTTCGTATG
165922 TTCACTCTTT
Statistics
Matches: 534, Mismatches: 130, Indels: 56
0.74 0.18 0.08
Matches are distributed among these distances:
61 29 0.05
62 3 0.01
63 25 0.05
64 51 0.10
65 60 0.11
66 346 0.65
67 15 0.03
68 5 0.01
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.45
Consensus pattern (66 bp):
ACTTAGGTTTTGCCTTAGTCACCTTTTGTTGGTTCGTATGGTTTCATCCCAGCTAACTCTTTTTC
G
Found at i:165427 original size:127 final size:129
Alignment explanation
Indices: 165200--165688 Score: 378
Period size: 127 Copynumber: 3.8 Consensus size: 129
165190 TGTTGGTTCG
* * *
165200 TATGGTTTCGTCCCAGCCAACTCTTTTTCAACTTAGGTTTTACCTTGATC-ACCTTTTGTTGGTT
1 TATGGTTTCATCCCAGCTAACTCTTTTTCAACTTAGGTTTTACCTTGGTCAACC-TTTGTTGGTT
* * * * * * **
165264 TGCATGGTTTTATCCCAACCAATTTTTTTTCAACTTTTCCACCCCAATCAT-CTTTTTTT-TTCA
65 TGTATGGTTTCATCCTAGCTAACTACTTTTCAACTTTTCCACCCCAATCATCCTTTTTTTCTTCA
* * *
165327 TATGGTTTCATCCCAGCTAACTCCTTTTCAACTTAGCTTTTACCTTGGTCAACCTTTGTTGGTTC
1 TATGGTTTCATCCCAGCTAACTCTTTTTCAACTTAGGTTTTACCTTGGTCAACCTTTGTTGGTTT
* * * * **
165392 GTATGGTTTCATACTAGCTAACTACTTTTCGACTTTTTCGCCTTAATCATCCTTTTTTTCGTTCA
66 GTATGGTTTCATCCTAGCTAACTACTTTTCAACTTTTCCACCCCAATCATCCTTTTTTTC-TTCA
** * ** * * * * *
165457 CGTGGTTTCATCCAAGCTAACTCTTTTTTGACTTAGGTTATGCCCTGGTTACCCTTTGTTGGTTT
1 TATGGTTTCATCCCAGCTAACTCTTTTTCAACTTAGGTTTTACCTTGGTCAACCTTTGTTGGTTT
* * * * * ** * * * * **
165522 ATATGGTTTCATCCTAGCTAACTCCTTTTTTC-CCTAGGTTCTGA-CTTAGTTAGCCTTTGTTGG
66 GTATGGTTTCATCCTAGCTAACTAC--TTTTCAACT--TTTC-CACCCCAATCATCCTTTTTTTC
165585 TTCA
126 TTCA
* * * * ** * *
165589 TATGGTTTCATCCCGGCTAACTCCTTTTCGACTTAAGTTTCGCCCTGGTCACCCTTTGTTGGTTT
1 TATGGTTTCATCCCAGCTAACTCTTTTTCAACTTAGGTTTTACCTTGGTCAACCTTTGTTGGTTT
* * *
165654 GTATGTTTTCATCCTAGCCAA-TCCCTTTTCAACTT
66 GTATGGTTTCATCCTAGCTAACT-ACTTTTCAACTT
165689 AAGTTTTGCC
Statistics
Matches: 289, Mismatches: 62, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
127 91 0.31
128 11 0.04
130 83 0.29
131 5 0.02
132 84 0.29
133 15 0.05
ACGTcount: A:0.17, C:0.25, G:0.14, T:0.45
Consensus pattern (129 bp):
TATGGTTTCATCCCAGCTAACTCTTTTTCAACTTAGGTTTTACCTTGGTCAACCTTTGTTGGTTT
GTATGGTTTCATCCTAGCTAACTACTTTTCAACTTTTCCACCCCAATCATCCTTTTTTTCTTCA
Found at i:165517 original size:130 final size:127
Alignment explanation
Indices: 165309--165550 Score: 313
Period size: 130 Copynumber: 1.9 Consensus size: 127
165299 TTTCCACCCC
* * * *
165309 AATCATCTTTTTTTTTCATATGGTTTCATCCCAGCTAACTCCTTTTCAACTTAGCTTTTACCTTG
1 AATCATCTTTTTTTTTCACATGGTTTCATCCAAGCTAACTCCTTTTCAACTTAGCTTATACCCTG
*
165374 GTCAACCTTTGTTGGTTCGTATGGTTTCATACTAGCTAACTACTTTTCGACTTTTTCGCCTT
66 GTCAACCTTTGTTGGTTCATATGGTTTCATACTAGCTAACTACTTTTCGACTTTTTCGCCTT
* * ** * *
165436 AATCATCCTTTTTTTCGTTCACGTGGTTTCATCCAAGCTAACTCTTTTTTGACTTAGGTTATGCC
1 AATCAT-CTTTTTTT--TTCACATGGTTTCATCCAAGCTAACTCCTTTTCAACTTAGCTTATACC
* * * * *
165501 CTGGTTACCCTTTGTTGGTTTATATGGTTTCATCCTAGCTAACTCCTTTT
63 CTGGTCAACCTTTGTTGGTTCATATGGTTTCATACTAGCTAACTACTTTT
165551 TTCCCTAGGT
Statistics
Matches: 96, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
127 6 0.06
128 8 0.08
130 82 0.85
ACGTcount: A:0.17, C:0.23, G:0.13, T:0.46
Consensus pattern (127 bp):
AATCATCTTTTTTTTTCACATGGTTTCATCCAAGCTAACTCCTTTTCAACTTAGCTTATACCCTG
GTCAACCTTTGTTGGTTCATATGGTTTCATACTAGCTAACTACTTTTCGACTTTTTCGCCTT
Found at i:165903 original size:197 final size:197
Alignment explanation
Indices: 165462--165921 Score: 480
Period size: 197 Copynumber: 2.3 Consensus size: 197
165452 GTTCACGTGG
* * * * * * *
165462 TTTCATCCAAGCTAACTCTTTTTTGACTTAGGTTATGCCCTGGTTACCCTTTGTTGGTTTATATG
1 TTTCATCCCAGCCAACTCTTTTTCGACTTAGGTT-TGCCCTAGTCACCTTTTGTTGGTTTGTATG
* * *** * * *
165527 GTTTCATCCTAGCTAACTCCTTTTTTCCCTAGGTTCTGACTTAGTTAGCCTTTGTTGGTTCATAT
65 GTTTCATCCCAGCCAACTCCTTTTCGACCTAAGTTCTGACTTAGTTAGCCTTTATTGATTCATAT
** *
165592 GGTTTCATCCCGGCTAACTCCTTTTCGACTTAAGTTTCGCCCTGGTCACCCTTTGTTGGTTTGTA
130 GGTTTCATCCCGGCTAACTCCTTTTCGACTTAAGTTTCGCCCAAGTCACCCTTTGTTGGTTTGCA
165657 TGT
195 TGT
* * * *
165660 TTTCATCCTAGCCAA-TCCCTTTTCAACTTAAGTTTTGCCCTAGTCACCTTTTGTTGGTTTGTAT
1 TTTCATCCCAGCCAACT-CTTTTTCGACTT-AGGTTTGCCCTAGTCACCTTTTGTTGGTTTGTAT
* * *
165724 GGTTTCATCCCCGCCAACTCCTTTTCGACTTAAGTTCT-ACTCTAGTTA-CTCTTTATTGATT-G
64 GGTTTCATCCCAGCCAACTCCTTTTCGACCTAAGTTCTGACT-TAGTTAGC-CTTTATTGATTCA
** * ** * * *
165786 TATGGTTTCATCTTGGCTAACTCTTTTTTTACTTAGGTTTTGCCCAAGTCACTCTTTGTTGGTTT
127 TATGGTTTCATCCCGGCTAACTCCTTTTCGACTTAAGTTTCGCCCAAGTCACCCTTTGTTGGTTT
165851 GCATGGT
192 GCAT-GT
* * * * *
165858 TTT-GTCCCGGCCAACTCTTTTTCGACCTAGGTTTCGCCTTAGTCACCTTTTGTTGGTTCGTATG
1 TTTCATCCCAGCCAACTCTTTTTCGACTTAGGTTT-GCCCTAGTCACCTTTTGTTGGTTTGTATG
165922 TTCACTCTTT
Statistics
Matches: 214, Mismatches: 41, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
196 5 0.02
197 107 0.50
198 98 0.46
199 4 0.02
ACGTcount: A:0.15, C:0.24, G:0.17, T:0.45
Consensus pattern (197 bp):
TTTCATCCCAGCCAACTCTTTTTCGACTTAGGTTTGCCCTAGTCACCTTTTGTTGGTTTGTATGG
TTTCATCCCAGCCAACTCCTTTTCGACCTAAGTTCTGACTTAGTTAGCCTTTATTGATTCATATG
GTTTCATCCCGGCTAACTCCTTTTCGACTTAAGTTTCGCCCAAGTCACCCTTTGTTGGTTTGCAT
GT
Found at i:166061 original size:66 final size:64
Alignment explanation
Indices: 165923--166068 Score: 157
Period size: 66 Copynumber: 2.2 Consensus size: 64
165913 GTTCGTATGT
* ** *
165923 TCACTCTTTGTTAATTCGTATGGTTTCATCCCGCCAACTTTTTTCCACTTAGGTTCCACCCTAG
1 TCACCCTTTGTTGGTTCATATGGTTTCATCCCGCCAACTTTTTTCCACTTAGGTTCCACCCTAG
* * * * ** * * *
165987 TTATCCTTTTTTGGTTCATATGGTTTCATCCCGATCAACTTCTTTTTGACTTAGGTTCTATCTTA
1 TCACCCTTTGTTGGTTCATATGGTTTCATCCCG-CCAACTT-TTTTCCACTTAGGTTCCACCCTA
166052 G
64 G
166053 TCACCCTTTGTTGGTT
1 TCACCCTTTGTTGGTT
166069 TGTATGATTT
Statistics
Matches: 64, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
64 26 0.41
65 6 0.09
66 32 0.50
ACGTcount: A:0.16, C:0.25, G:0.14, T:0.46
Consensus pattern (64 bp):
TCACCCTTTGTTGGTTCATATGGTTTCATCCCGCCAACTTTTTTCCACTTAGGTTCCACCCTAG
Found at i:169186 original size:153 final size:157
Alignment explanation
Indices: 168869--169253 Score: 355
Period size: 153 Copynumber: 2.5 Consensus size: 157
168859 ATTATTTCTT
* * *** * *
168869 ATCATTTTCGAGTCCTTTAAGGTTACTGAGATACTTTAATGTC-GAAGATATAT-TAGAAGAGCA
1 ATCATTTTTGAGTCTTTTAAGACAACTGAGATACTTTCATGTCAAAAG-TATATCTAGAAGAGCA
*
168932 TTTTAATAATTTTCTCCTAGAATCTAGTCCGATCTAGTCACTGAGATGCTTTTATACCAAAAGTG
65 TTTTAATAATTTTCT-CTAGAATCTAGTCCGATCTAGTCACAGAGATGCTTTTATACCAAAAGTG
* *
168997 TGCATTTAGGATATGTTCACTCTTTTATA
129 TACATTTAGAATATGTTCACTCTTTTATA
* * * *
169026 ATTA-TTTTGAGT-TCTTTAAGACAATTGAGATACTTTCATGTCAAAAGTATATCT-TAAGGGCA
1 ATCATTTTTGAGTCT-TTTAAGACAACTGAGATACTTTCATGTCAAAAGTATATCTAGAAGAGCA
* * * *
169088 TTTTAGTAATTTT-T-TAGAA-CTAAGTTCGATGTAGTCACCAGA-ATGCTTTTATGCCAAAAGT
65 TTTTAATAATTTTCTCTAGAATCT-AGTCCGATCTAGTCA-CAGAGATGCTTTTATACCAAAAGT
* * * *
169149 GTACATTTATAATA-GATTTA-TCATTTTTTG
128 GTACATTTAGAATATG-TTCACTC-TTTTATA
** * * *
169179 ATCATTTTTGAGTCTTTTAAGATTACTGAGATACTTTCATATCAAAAATATATCCA-AA-AGCAT
1 ATCATTTTTGAGTCTTTTAAGACAACTGAGATACTTTCATGTCAAAAGTATATCTAGAAGAGCAT
**
169242 TTTGGTAATTTT
66 TTTAATAATTTT
169254 GCATTAGAAT
Statistics
Matches: 187, Mismatches: 31, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
152 5 0.03
153 73 0.39
154 47 0.25
155 2 0.01
156 53 0.28
157 7 0.04
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.41
Consensus pattern (157 bp):
ATCATTTTTGAGTCTTTTAAGACAACTGAGATACTTTCATGTCAAAAGTATATCTAGAAGAGCAT
TTTAATAATTTTCTCTAGAATCTAGTCCGATCTAGTCACAGAGATGCTTTTATACCAAAAGTGTA
CATTTAGAATATGTTCACTCTTTTATA
Found at i:172341 original size:196 final size:196
Alignment explanation
Indices: 172003--172594 Score: 1177
Period size: 196 Copynumber: 3.0 Consensus size: 196
171993 CGTGTTAAGG
172003 GGCT-CGAACCATGTATGATATGTAACATCAGCTTTTCTGGTGTCTAAGATGCTATATTGGTGGC
1 GGCTGCGAACCATGTATGATATGTAACATCAGCTTTTCTGGTGTCTAAGATGCTATATTGGTGGC
172067 CATAAAGGCTCTTTGGGAAAATGCTGGTTCTCATTGGAAATGTGCCTGAACGCTAGTTCTCTTCC
66 CATAAAGGCTCTTTGGGAAAATGCTGGTTCTCATTGGAAATGTGCCTGAACGCTAGTTCTCTTCC
172132 ATTACTTTCCTTGTAATATTGATTTTGTTTTTATTGTTGCACCAAGAGAATTAGTTTAAGTGAAG
131 ATTACTTTCCTTGTAATATTGATTTTGTTTTTATTGTTGCACCAAGAGAATTAGTTTAAGTGAAG
172197 A
196 A
172198 GGCTGCGAACCATGTATGATATGTAACATCAGCTTTTCTGGTGTCTAAGATGCTATATTGGTGGC
1 GGCTGCGAACCATGTATGATATGTAACATCAGCTTTTCTGGTGTCTAAGATGCTATATTGGTGGC
172263 CATAAAGGCTCTTTGGGAAAATGCTGGTTCTCATTGGAAATGTGCCTGAACGCTAGTTCTCTTCC
66 CATAAAGGCTCTTTGGGAAAATGCTGGTTCTCATTGGAAATGTGCCTGAACGCTAGTTCTCTTCC
172328 ATTACTTTCCTTGTAATATTGATTTTGTTTTTATTGTTGCACCAAGAGAATTAGTTTAAGTGAAG
131 ATTACTTTCCTTGTAATATTGATTTTGTTTTTATTGTTGCACCAAGAGAATTAGTTTAAGTGAAG
172393 A
196 A
172394 GGCTGCGAACCATGTATGATATGTAACATCAGCTTTTCTGGTGTCTAAGATGCTATATTGGTGGC
1 GGCTGCGAACCATGTATGATATGTAACATCAGCTTTTCTGGTGTCTAAGATGCTATATTGGTGGC
172459 CATAAAGGCTCTTTGGGAAAATGCTGGTTCTCATTGGAAATGTGCCTGAACGCTAGTTCTCTTCC
66 CATAAAGGCTCTTTGGGAAAATGCTGGTTCTCATTGGAAATGTGCCTGAACGCTAGTTCTCTTCC
172524 ATTACTTTCCTTGTAATATTGATTTTGTTTTTATTGTTGCACCAAGAGAATTAGTTTAAGTGAAG
131 ATTACTTTCCTTGTAATATTGATTTTGTTTTTATTGTTGCACCAAGAGAATTAGTTTAAGTGAAG
172589 A
196 A
172590 GGCTG
1 GGCTG
172595 ACTTGGGAAA
Statistics
Matches: 396, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
195 4 0.01
196 392 0.99
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (196 bp):
GGCTGCGAACCATGTATGATATGTAACATCAGCTTTTCTGGTGTCTAAGATGCTATATTGGTGGC
CATAAAGGCTCTTTGGGAAAATGCTGGTTCTCATTGGAAATGTGCCTGAACGCTAGTTCTCTTCC
ATTACTTTCCTTGTAATATTGATTTTGTTTTTATTGTTGCACCAAGAGAATTAGTTTAAGTGAAG
A
Found at i:178244 original size:31 final size:31
Alignment explanation
Indices: 178209--178284 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
178199 AGCCGAACCA
*
178209 AATAAA-CAACCATGAACTATCAATAAGTTCT
1 AATAAATCAA-CATGAACAATCAATAAGTTCT
** *
178240 AATAAATGTACATGGACAATCAATAAGTTCT
1 AATAAATCAACATGAACAATCAATAAGTTCT
* *
178271 AATATATCTACATG
1 AATAAATCAACATG
178285 GACAGAATGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 37 0.97
32 1 0.03
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (31 bp):
AATAAATCAACATGAACAATCAATAAGTTCT
Found at i:178285 original size:31 final size:31
Alignment explanation
Indices: 178227--178288 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
178217 ACCATGAACT
*
178227 ATCAATAAGTTCTAATAAATGTACATGGACA
1 ATCAATAAGTTCTAATAAATCTACATGGACA
*
178258 ATCAATAAGTTCTAATATATCTACATGGACA
1 ATCAATAAGTTCTAATAAATCTACATGGACA
178289 GAATGAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.31
Consensus pattern (31 bp):
ATCAATAAGTTCTAATAAATCTACATGGACA
Found at i:178453 original size:2 final size:2
Alignment explanation
Indices: 178411--178435 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
178401 GAATATCATA
178411 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
178436 CACACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:179704 original size:16 final size:16
Alignment explanation
Indices: 179683--179714 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
179673 CCAACGATCA
*
179683 ATATTGATTTAAACCT
1 ATATTGATCTAAACCT
179699 ATATTGATCTAAACCT
1 ATATTGATCTAAACCT
179715 CGGATCGCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (16 bp):
ATATTGATCTAAACCT
Found at i:181576 original size:30 final size:30
Alignment explanation
Indices: 181542--181600 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
181532 TCCTGGCTCT
181542 TTCTGTTACAGCTCCCAGCTCCAGCTCCAA
1 TTCTGTTACAGCTCCCAGCTCCAGCTCCAA
181572 TTCTGTTACAGCTCCCAGCTCCAGCTCCA
1 TTCTGTTACAGCTCCCAGCTCCAGCTCCA
181601 GCTCCAACTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.19, C:0.41, G:0.14, T:0.27
Consensus pattern (30 bp):
TTCTGTTACAGCTCCCAGCTCCAGCTCCAA
Found at i:182749 original size:22 final size:22
Alignment explanation
Indices: 182721--182771 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
182711 GTGCATATTT
182721 AGTATACTTATCAATAGTGACC
1 AGTATACTTATCAATAGTGACC
182743 AGTATACTTATCAATAGTGACC
1 AGTATACTTATCAATAGTGACC
182765 AGTATAC
1 AGTATAC
182772 AATTGAACCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (22 bp):
AGTATACTTATCAATAGTGACC
Found at i:186568 original size:11 final size:11
Alignment explanation
Indices: 186537--186586 Score: 57
Period size: 11 Copynumber: 4.4 Consensus size: 11
186527 AAGACTATGA
186537 AGAATAAGAAG
1 AGAATAAGAAG
186548 AGAA-ATAGAAG
1 AGAATA-AGAAG
186559 AGAATAAGAAG
1 AGAATAAGAAG
*
186570 AAGAATTAAGAGG
1 -AGAA-TAAGAAG
186583 AGAA
1 AGAA
186587 AACTGATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
10 1 0.03
11 18 0.53
12 9 0.26
13 6 0.18
ACGTcount: A:0.62, C:0.00, G:0.28, T:0.10
Consensus pattern (11 bp):
AGAATAAGAAG
Found at i:186807 original size:30 final size:30
Alignment explanation
Indices: 186773--186831 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
186763 TCCTAGCTCT
*
186773 TTCTGTTACAGCTCCCAGCTCCAGCTCCAA
1 TTCTGTTACAGCTCCCAGCTCCAACTCCAA
186803 TTCTGTTACAGCTCCCAGCTCCAACTCCA
1 TTCTGTTACAGCTCCCAGCTCCAACTCCA
186832 GCTCCAACTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.20, C:0.41, G:0.12, T:0.27
Consensus pattern (30 bp):
TTCTGTTACAGCTCCCAGCTCCAACTCCAA
Found at i:189364 original size:25 final size:23
Alignment explanation
Indices: 189328--189380 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 23
189318 TATATCTTTA
189328 TTTATAAAAATTTCATTTTCTA-ATT
1 TTTATAAAAA-TT-ATTTT-TAGATT
189353 TTTA-AAATAATTATTTTTAGATT
1 TTTATAAA-AATTATTTTTAGATT
189376 TTTAT
1 TTTAT
189381 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
22 2 0.08
23 12 0.48
24 5 0.20
25 6 0.24
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTATAAAAATTATTTTTAGATT
Found at i:189407 original size:29 final size:30
Alignment explanation
Indices: 189341--189399 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
189331 ATAAAAATTT
* *
189341 CATTTTCTAATTTTTAAAATAATTATTTTTA
1 CATTTT-TATTTTTTAAAATAATAATTTTTA
*
189372 GATTTTTATTTTTTAAAA-AATAATTTTT
1 CATTTTTATTTTTTAAAATAATAATTTTT
189400 CCTTTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.36
30 11 0.44
31 5 0.20
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (30 bp):
CATTTTTATTTTTTAAAATAATAATTTTTA
Found at i:190950 original size:22 final size:20
Alignment explanation
Indices: 190918--190972 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
190908 CATAAGTAAA
* *
190918 TGTATCGATACATGCTCACAAT
1 TGTATCAATACATGATC-C-AT
*
190940 TGTATCAATACATTATCCAT
1 TGTATCAATACATGATCCAT
190960 TGTATCAATACAT
1 TGTATCAATACAT
190973 TATGGATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 15 0.50
21 1 0.03
22 14 0.47
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (20 bp):
TGTATCAATACATGATCCAT
Found at i:190963 original size:20 final size:20
Alignment explanation
Indices: 190938--190975 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
190928 CATGCTCACA
190938 ATTGTATCAATACATTATCC
1 ATTGTATCAATACATTATCC
190958 ATTGTATCAATACATTAT
1 ATTGTATCAATACATTAT
190976 GGATTTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (20 bp):
ATTGTATCAATACATTATCC
Found at i:191672 original size:13 final size:13
Alignment explanation
Indices: 191654--191679 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
191644 CACATTACTG
191654 GAAACAAACCACT
1 GAAACAAACCACT
191667 GAAACAAACCACT
1 GAAACAAACCACT
191680 TTTCCATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.31, G:0.08, T:0.08
Consensus pattern (13 bp):
GAAACAAACCACT
Found at i:192369 original size:24 final size:24
Alignment explanation
Indices: 192342--192427 Score: 120
Period size: 24 Copynumber: 3.6 Consensus size: 24
192332 ATCGATATAG
*
192342 TGAACAATGATGAATAGTGATACA
1 TGAACAGTGATGAATAGTGATACA
*
192366 TGAACAGTGATGAACT-GTGATGCA
1 TGAACAGTGATGAA-TAGTGATACA
* *
192390 TGAACAGTGATGAACAGTTATACA
1 TGAACAGTGATGAATAGTGATACA
192414 TGAACAGTGATGAA
1 TGAACAGTGATGAA
192428 ACAATATGAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
24 54 0.98
25 1 0.02
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (24 bp):
TGAACAGTGATGAATAGTGATACA
Found at i:192374 original size:14 final size:13
Alignment explanation
Indices: 192351--192424 Score: 52
Period size: 14 Copynumber: 5.9 Consensus size: 13
192341 GTGAACAATG
*
192351 ATGAATAGTGATAC
1 ATGAACAGTGAT-C
192365 ATGAACAGTG---
1 ATGAACAGTGATC
*
192375 ATGAACTGTGATGC
1 ATGAACAGTGAT-C
192389 ATGAACAGTG---
1 ATGAACAGTGATC
*
192399 ATGAACAGTTATAC
1 ATGAACAGTGAT-C
192413 ATGAACAGTGAT
1 ATGAACAGTGAT
192425 GAAACAATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
10 18 0.38
14 29 0.62
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (13 bp):
ATGAACAGTGATC
Found at i:192508 original size:20 final size:19
Alignment explanation
Indices: 192483--192534 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
192473 TGCCAATTTT
192483 ATGTATCGATACAATTCATA-
1 ATGTATCGATACAA-TCA-AC
* *
192503 ATGTATCGATATAATGAAC
1 ATGTATCGATACAATCAAC
192522 ATGTATCGATACA
1 ATGTATCGATACA
192535 TTCTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 1 0.04
19 14 0.50
20 13 0.46
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACAATCAAC
Done.