Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1225
Parameters: 2 7 7 80 10 50 1000
Length:  73747

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--68
18
2.3
18
80
8
50
19
0
2
78
0.86
108--166
23
2.5
24
83
5
66
23
1
3
71
1.11
114--170
24
2.4
25
82
5
64
26
1
1
70
1.07
1029--1064
17
2.1
18
89
5
56
55
0
0
44
0.99
1035--1086
19
2.8
19
82
8
54
59
1
0
38
1.08
3600--3635
10
3.5
10
88
7
54
66
0
0
33
0.92
3596--3635
21
2.0
20
90
5
62
65
0
0
35
0.93
4345--4381
2
18.5
2
100
0
74
48
0
0
51
1.00
5862--5900
8
4.9
8
90
0
51
41
0
0
58
0.98
8124--8172
23
2.1
23
81
11
55
44
0
0
55
0.99
9116--9190
27
2.8
27
93
0
123
48
18
6
26
1.73
13588--13635
23
2.1
23
84
7
62
50
22
4
22
1.67
14002--14040
6
6.5
6
93
0
60
33
17
28
20
1.96
15985--16055
24
3.0
24
89
8
117
36
11
23
28
1.89
16401--16472
28
2.6
29
80
8
87
37
1
4
56
1.27
16437--16482
22
2.2
20
84
7
56
47
0
2
50
1.13
16545--16578
7
5.0
7
96
3
61
73
0
0
26
0.83
18777--18845
25
2.8
24
84
4
102
26
7
14
52
1.67
18810--18867
24
2.4
24
85
0
71
32
6
15
44
1.73
23803--23853
19
2.5
21
90
6
79
31
1
0
66
1.03
24675--24721
22
2.1
22
84
0
58
72
0
0
27
0.85
24765--24798
13
2.6
13
85
0
50
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24770--24798
13
2.1
14
93
6
51
65
0
0
34
0.93
24775--24843
31
2.3
31
89
2
104
43
0
0
56
0.99
29885--29926
18
2.4
17
88
7
66
35
7
0
57
1.26
30447--30504
21
2.7
23
82
12
61
25
1
5
67
1.21
30491--30555
21
3.2
21
77
14
75
43
0
0
56
0.99
33149--33220
34
2.1
34
92
0
117
41
23
4
30
1.73
34091--34129
20
1.9
21
84
5
53
46
0
0
53
1.00
34491--34538
14
3.5
14
80
5
62
52
2
0
45
1.12
34521--34563
20
2.1
21
91
4
70
44
0
0
55
0.99
40163--40195
17
2.0
17
88
5
50
18
3
6
72
1.18
40216--40280
21
3.2
21
77
14
75
43
0
0
56
0.99
42874--42945
34
2.1
34
92
0
117
41
23
4
30
1.73
43817--43855
20
1.9
21
84
5
53
46
0
0
53
1.00
44218--44266
14
3.5
14
75
10
55
53
2
0
44
1.12
44249--44291
20
2.1
21
91
4
70
44
0
0
55
0.99
49892--49924
17
2.0
17
88
5
50
18
3
6
72
1.18
49945--50009
21
3.2
21
77
14
75
43
0
0
56
0.99
51442--51506
28
2.4
27
82
7
69
27
7
20
44
1.78
57537--57607
27
2.6
27
88
6
99
22
7
23
46
1.76
59086--59157
34
2.1
34
94
0
126
43
22
4
30
1.72
60029--60067
20
1.9
21
84
5
53
46
0
0
53
1.00
60425--60470
14
3.3
14
79
11
58
54
2
0
43
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60431--60475
13
3.3
13
81
9
54
57
2
0
40
1.11
60679--60709
15
2.1
15
100
0
62
19
29
6
45
1.75
69877--69963
1
87.0
1
76
0
66
86
5
8
0
0.71
69891--69951
16
3.8
16
80
8
79
85
4
9
0
0.74
69883--69963
32
2.6
32
98
2
155
86
6
7
0
0.71

Tables:   1

The End!