Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1226
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86302
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Found at i:13607 original size:8 final size:7
Alignment explanation
Indices: 13590--13664 Score: 59
Period size: 7 Copynumber: 10.6 Consensus size: 7
13580 CCTTCTCTTC
13590 AAAA-AA
1 AAAAGAA
13596 AAAAGCAA
1 AAAAG-AA
*
13604 AAAAAAA
1 AAAAGAA
13611 AAAAGAA
1 AAAAGAA
13618 AAAA-AA
1 AAAAGAA
13624 AACAA-AA
1 AA-AAGAA
13631 AAACA-AA
1 AAA-AGAA
13638 ACAAAGAA
1 A-AAAGAA
*
13646 AAAGAGAG
1 AAA-AGAA
13654 AAAAGAA
1 AAAAGAA
13661 AAAA
1 AAAA
13665 ACCTACTTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
6 9 0.16
7 32 0.55
8 17 0.29
ACGTcount: A:0.85, C:0.05, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:13608 original size:13 final size:12
Alignment explanation
Indices: 13589--13648 Score: 75
Period size: 13 Copynumber: 4.8 Consensus size: 12
13579 ACCTTCTCTT
*
13589 CAAAAAAAAAAG
1 CAAAAAAAAAAA
13601 CAAAAAAAAAAA
1 CAAAAAAAAAAA
*
13613 AAGAAAAAAAAAA
1 CA-AAAAAAAAAA
13626 CAAAAAAACAAAA
1 CAAAAAAA-AAAA
13639 CAAAGAAAAA
1 CAAA-AAAAA
13649 GAGAGAAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
12 18 0.43
13 20 0.48
14 4 0.10
ACGTcount: A:0.87, C:0.08, G:0.05, T:0.00
Consensus pattern (12 bp):
CAAAAAAAAAAA
Found at i:13611 original size:16 final size:14
Alignment explanation
Indices: 13590--13665 Score: 82
Period size: 15 Copynumber: 5.3 Consensus size: 14
13580 CCTTCTCTTC
13590 AAAAAAAAAAGCAAA
1 AAAAAAAAAAG-AAA
13605 AAAAAAAAAAGAAA
1 AAAAAAAAAAGAAA
13619 AAAAAAACAAA-AAA
1 AAAAAAA-AAAGAAA
* *
13633 ACAAAACAAAGAAA
1 AAAAAAAAAAGAAA
* *
13647 AAGAGAGAAAAGAAA
1 AA-AAAAAAAAGAAA
13662 AAAA
1 AAAA
13666 CCTACTTAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
13 3 0.06
14 23 0.45
15 25 0.49
ACGTcount: A:0.86, C:0.05, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAGAAA
Found at i:13648 original size:38 final size:38
Alignment explanation
Indices: 13589--13664 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 38
13579 ACCTTCTCTT
*
13589 CAAAAAAAAAAGCAAAAAAAAAAAAAGAAAA-AAAAAA
1 CAAAAAAAAAAACAAAAAAAAAAAAAGAAAAGAAAAAA
* * *
13626 CAAAAAAACAAAACAAAGAAAAAGAGAGAAAAGAAAAAA
1 CAAAAAAA-AAAACAAAAAAAAAAAAAGAAAAGAAAAAA
13665 ACCTACTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 8 0.24
38 19 0.58
39 6 0.18
ACGTcount: A:0.84, C:0.07, G:0.09, T:0.00
Consensus pattern (38 bp):
CAAAAAAAAAAACAAAAAAAAAAAAAGAAAAGAAAAAA
Found at i:13665 original size:1 final size:1
Alignment explanation
Indices: 13590--13648 Score: 55
Period size: 1 Copynumber: 59.0 Consensus size: 1
13580 CCTTCTCTTC
** * * * * *
13590 AAAAAAAAAAGCAAAAAAAAAAAAAGAAAAAAAAAACAAAAAAACAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13649 GAGAGAAAAG
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.88, C:0.07, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:14715 original size:55 final size:55
Alignment explanation
Indices: 14630--15307 Score: 971
Period size: 55 Copynumber: 12.3 Consensus size: 55
14620 TCCGCTTTTT
* ***
14630 AGTCCTTAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCGCCTTCC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTCC
14685 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
14740 AGTCCTCAAAAAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
14795 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
14850 AGTCTTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
14905 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* * *
14960 AGTCCCCAAAGAGCAGGACACCTTTCAAAGCCCACCCAAGTTGGTGGCATTTTCT
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
15015 AGTCCTCAAAGAGCATGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
*
15070 AGTCCCCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
15125 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* * * * * *
15180 ATTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACATAAGTGGGTGGCACCTTT-C
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* * *
15235 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-T
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* *
15290 ACTCCTCAATGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
15308 TACAATTTAT
Statistics
Matches: 570, Mismatches: 39, Indels: 28
0.89 0.06 0.04
Matches are distributed among these distances:
54 16 0.03
55 537 0.94
56 17 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:15848 original size:14 final size:14
Alignment explanation
Indices: 15831--15857 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15821 GATAAAGTGT
15831 TTGAAAAAAAAAAA
1 TTGAAAAAAAAAAA
15845 TTGAAAAAAAAAA
1 TTGAAAAAAAAAA
15858 TCCAAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (14 bp):
TTGAAAAAAAAAAA
Found at i:15888 original size:21 final size:21
Alignment explanation
Indices: 15862--15918 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
15852 AAAAAATCCA
15862 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
15883 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
15904 AATGTATCGATACAT
1 AATGTATCGATACAT
15919 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:16067 original size:13 final size:13
Alignment explanation
Indices: 16049--16074 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16039 CATTTTTCTG
16049 TGTATCGATACAT
1 TGTATCGATACAT
16062 TGTATCGATACAT
1 TGTATCGATACAT
16075 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:16071 original size:33 final size:33
Alignment explanation
Indices: 16029--16095 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
16019 GCCAAGGAAA
***
16029 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
16062 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
16095 T
1 T
16096 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:18574 original size:27 final size:28
Alignment explanation
Indices: 18544--18619 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
18534 TTTCTTCACA
18544 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
18571 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
18599 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
18620 GTTTTATCGC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:18771 original size:52 final size:51
Alignment explanation
Indices: 18433--18771 Score: 206
Period size: 52 Copynumber: 6.4 Consensus size: 51
18423 ATCAATTCTC
* * * *
18433 CACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAA-TTTT
1 CACAATCGGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTT
* * *
18483 CTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAAAACACCAATTTCTT
1 C-ACAATCGGGGATACTCCAACTCCGGTTTTATTTCC----AAAACACCAATTT-TT
* * * ** * *
18540 CACAATCGGGGATACTCCAAC-CCCG-TTAATCATCGGGGATACTCCAACCCCGTTATTT
1 CACAATCGGGGATACTCCAACTCCGGTTTTAT-TTC--CAAAACACCAA-----TT-TTT
* * ** * *
18598 C-CGA--GGGGATACTCCAACCCCGGTTTTATCGCTAAAACACTAATTTTT
1 CACAATCGGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTT
* * *
18646 CCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTC
1 -CACAATCGGGGATACTCCAACTCC-GGTTTTATTTCCAAAACACCAATTTTT
** * *
18698 CTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
1 C-ACAATCGGGGATACTCCAACTCCGGTTTTATTTCC-AAAACACCAATTTTT
*
18751 CACAATCGAGGATACTCCAAC
1 CACAATCGGGGATACTCCAAC
18772 CTTGTTATTT
Statistics
Matches: 219, Mismatches: 44, Indels: 50
0.70 0.14 0.16
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 3 0.01
51 34 0.16
52 77 0.35
53 23 0.11
54 10 0.05
55 27 0.12
56 24 0.11
57 9 0.04
58 5 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (51 bp):
CACAATCGGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTT
Found at i:18791 original size:28 final size:28
Alignment explanation
Indices: 18755--18831 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
18745 ATTTTTCACA
* ** *
18755 ATCGAGGATACTCCAACCTTGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
18783 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
18811 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
18832 ACTTTATTTC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:18814 original size:212 final size:212
Alignment explanation
Indices: 18431--18831 Score: 628
Period size: 212 Copynumber: 1.9 Consensus size: 212
18421 TTATCAATTC
* *
18431 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
18496 TACTCTAACTCCGATTTTATTTCCAAAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAAC
66 TACTCCAACTCCGATTTTATTTCC--AAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
*
18561 CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTA
129 CCCGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGTTTTA
18626 TCGCTAAAACACTAATTTT
194 TCGCTAAAACACTAATTTT
* * *
18645 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGGGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
*
18709 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
** *
18772 CTTGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCG
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCG
18832 ACTTTATTTC
Statistics
Matches: 172, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
211 27 0.16
212 63 0.37
213 3 0.02
214 44 0.26
215 35 0.20
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (212 bp):
TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGTTTTATC
GCTAAAACACTAATTTT
Found at i:18902 original size:106 final size:107
Alignment explanation
Indices: 18706--18912 Score: 238
Period size: 106 Copynumber: 1.9 Consensus size: 107
18696 TCCTTTAATC
* * * *
18706 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATA-CAATTTCTCACAACCGAGGATACTCCAA
** * * *
18771 CCTTGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
65 CCCCGTTATTTCATAGGGAACACTCCAACCCCGTTACTTCCGA
* ** * * *
18814 GGGGATACTCCAACCCCGACTTTATTTCTAATCAT-CGATTTCTCACAACCGGGGATACTCCAGC
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACAATTTCTCACAACCGAGGATACTCCAAC
*
18878 CCCGTTATTTTCA-AGGGAACACTCCAACCCTGTTA
66 CCCGTTA-TTTCATAGGGAACACTCCAACCCCGTTA
18913 TTATCTCCAA
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
106 47 0.57
107 5 0.06
108 30 0.37
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACAATTTCTCACAACCGAGGATACTCCAAC
CCCGTTATTTCATAGGGAACACTCCAACCCCGTTACTTCCGA
Found at i:26550 original size:80 final size:79
Alignment explanation
Indices: 26448--26650 Score: 221
Period size: 79 Copynumber: 2.6 Consensus size: 79
26438 AATAACAGGG
* * * * *
26448 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTA
*
26511 GAAAAAAAAAATCGGGA
64 G-AAAAAAAAACCGGGA
* * *
26528 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
* * * *
26593 GAATAAAGCCGGGG
66 AAAAAAAACCGGGA
* * *
26607 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
26651 GAAATAACGA
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 56 0.54
80 48 0.46
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAAAAAAACCGGGA
Found at i:26642 original size:28 final size:28
Alignment explanation
Indices: 26602--26673 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
26592 GGAATAAAGC
** *
26602 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
26630 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
26658 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
26674 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:26793 original size:52 final size:53
Alignment explanation
Indices: 26662--26831 Score: 145
Period size: 52 Copynumber: 3.3 Consensus size: 53
26652 AAATAACGAG
* * * * * *
26662 GTTGGAGTATCCTCGATTGT-GAGAAATTGGTATTTTTGGAAATAAAATC-GAA
1 GTTGGAGTATCCCCGATTGTGGAAAAATTGG-AGTTTTGAAAATAAAACCAGGA
** *
26714 GTTGGAGTATCCCCGATTAAAGG-AAAATTGGCGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGGAAAAATTGGAGTTTTGAAAATAAAACCAGGA
* * * **
26767 -TTGGAGTATCCCCAATTGTGGAAAAATTAGTGTTTT-AGCGATAAAACCA-GA
1 GTTGGAGTATCCCCGATTGTGGAAAAATTGGAGTTTTGA-AAATAAAACCAGGA
26818 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
26832 TCAGAAATAA
Statistics
Matches: 96, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
51 5 0.05
52 81 0.84
53 9 0.09
54 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (53 bp):
GTTGGAGTATCCCCGATTGTGGAAAAATTGGAGTTTTGAAAATAAAACCAGGA
Found at i:26865 original size:184 final size:185
Alignment explanation
Indices: 26634--26973 Score: 510
Period size: 185 Copynumber: 1.8 Consensus size: 185
26624 AAGTAACGGG
* *
26634 GTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGTG-AGAAATTGGT-ATTT
1 GTTGGAGTATCCCCCATGAAATAACGAGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGATTT
* *
26697 TTGGAAATAAAATC-GAAGTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAA
66 TTGGAAATAAAATCAG-AGTTAGAGTATCCCCGATTAAA-GAAAATTAGCGTTTTGAAAATAAAA
*
26761 CCAGGA-TTGGAGTATCCCCAATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCAGA
129 CC-GGAGTTGGAATATCCCCAATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCAGA
* *
26818 GTTGGAGTATCCCCTCA-GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTT
1 GTTGGAGTATCCCC-CATGAAATAACGAGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGATT
* * *
26882 TTTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAAT
65 TTTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTAAAGAAAATTAGCGTTTTGAAAATAAAAC
*
26947 CGGAGTTGGAATATCCCCGATTGTGGA
130 CGGAGTTGGAATATCCCCAATTGTGGA
26974 GAATTGATAA
Statistics
Matches: 140, Mismatches: 11, Indels: 9
0.88 0.07 0.06
Matches are distributed among these distances:
184 47 0.34
185 55 0.39
186 37 0.26
187 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (185 bp):
GTTGGAGTATCCCCCATGAAATAACGAGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGATTT
TTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACC
GGAGTTGGAATATCCCCAATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCAGA
Found at i:26942 original size:51 final size:53
Alignment explanation
Indices: 26850--26968 Score: 145
Period size: 51 Copynumber: 2.3 Consensus size: 53
26840 AACGGGGTTG
* * *
26850 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCAGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCAGAGTTA
* *
26904 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCAGAGTTA
*
26955 GAATATCCCCGATT
1 GAGTATCCCCGATT
26969 GTGGAGAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
51 33 0.57
52 2 0.03
53 8 0.14
54 15 0.26
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCAGAGTTA
Found at i:26962 original size:133 final size:132
Alignment explanation
Indices: 26714--26964 Score: 296
Period size: 133 Copynumber: 1.9 Consensus size: 132
26704 TAAAATCGAA
*
26714 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGATTGGAGTATCCC
1 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGATTAGAGTATCCC
* * ** *
26779 CAATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCAGAGTTGGAGTATCCCCTCAGAAATAACG
66 CAATTATAGAAAAATTAGTGTTTTAGAAATAAAACCAGAGTTGGAATATCCCCTCAGAAATAACG
26844 GG
131 GG
* * * *
26846 GTTGGAGTATCCCCGATTGTGAA-G-AAATTGGTGTTTTTTGGAAATAAAATCA-GAGTTAGAGT
1 GTTGGAGTATCCCCGA-T-TAAAGGAAAATTGGCG--TTTTGAAAATAAAACCAGGA-TTAGAGT
* * *
26908 ATCCCCGATTATAG-AAAATTAGTGTTTT-GAAAATAAAATCGGAGTTGGAATATCCCC
61 ATCCCCAATTATAGAAAAATTAGTGTTTTAG-AAATAAAACCAGAGTTGGAATATCCCC
26965 GATTGTGGAG
Statistics
Matches: 100, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
132 25 0.25
133 40 0.40
134 35 0.35
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29
Consensus pattern (132 bp):
GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGATTAGAGTATCCC
CAATTATAGAAAAATTAGTGTTTTAGAAATAAAACCAGAGTTGGAATATCCCCTCAGAAATAACG
GG
Found at i:29351 original size:13 final size:13
Alignment explanation
Indices: 29333--29358 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29323 ACAAAGATCC
29333 ATGTATCGATACA
1 ATGTATCGATACA
29346 ATGTATCGATACA
1 ATGTATCGATACA
29359 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:29354 original size:33 final size:33
Alignment explanation
Indices: 29312--29378 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
29302 AAAATTTCCA
***
29312 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
29345 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
29378 A
1 A
29379 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:29422 original size:19 final size:18
Alignment explanation
Indices: 29398--29465 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
29388 CAGTAGCTAA
29398 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
29417 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
29432 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
29449 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
29466 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:29438 original size:13 final size:13
Alignment explanation
Indices: 29420--29444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29410 ACAATACTTA
29420 TGTATCGATACAT
1 TGTATCGATACAT
29433 TGTATCGATACA
1 TGTATCGATACA
29445 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:29442 original size:32 final size:32
Alignment explanation
Indices: 29401--29463 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
29391 TAGCTAATTA
*
29401 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
29433 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
29464 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:30394 original size:13 final size:13
Alignment explanation
Indices: 30376--30406 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
30366 GATACGAGGG
30376 ACATTGTATCAAT
1 ACATTGTATCAAT
*
30389 ACATTGTATCGAT
1 ACATTGTATCAAT
30402 ACATT
1 ACATT
30407 ATGCCCAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (13 bp):
ACATTGTATCAAT
Found at i:30470 original size:19 final size:20
Alignment explanation
Indices: 30446--30492 Score: 78
Period size: 19 Copynumber: 2.4 Consensus size: 20
30436 TCAAAGCAAT
*
30446 GTATCGATACATTAT-GAAA
1 GTATCGATACATTATAAAAA
30465 GTATCGATACATTATAAAAA
1 GTATCGATACATTATAAAAA
30485 GTATCGAT
1 GTATCGAT
30493 GCATAGCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.32
Consensus pattern (20 bp):
GTATCGATACATTATAAAAA
Found at i:32722 original size:20 final size:19
Alignment explanation
Indices: 32658--32732 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
32648 TGTATCGATA
**
32658 CATTGTATTGATACATGCT
1 CATTGTATCAATACATGCT
32677 CATTGTATCAATACATGCT
1 CATTGTATCAATACATGCT
*
32696 CATTGTATCAATACATACT
1 CATTGTATCAATACATGCT
*
32715 CAATTGTATCGATACATG
1 C-ATTGTATCAATACATG
32733 AAACTGGCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 36 0.72
20 14 0.28
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (19 bp):
CATTGTATCAATACATGCT
Found at i:34397 original size:19 final size:19
Alignment explanation
Indices: 34373--34436 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 19
34363 TTTCAACGAT
34373 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
34392 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
34406 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
34424 TTGTATTGATACA
1 TTGTATCGATACA
34437 ATGCAAGCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:34410 original size:32 final size:32
Alignment explanation
Indices: 34374--34439 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
34364 TTCAACGATT
34374 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
34406 TGTATCGATACATAAGTGTTGTATTGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
34438 TG
1 TG
34440 CAAGCTACTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:34411 original size:13 final size:13
Alignment explanation
Indices: 34393--34417 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34383 ACATAAGTGT
34393 TGTATCGATACAA
1 TGTATCGATACAA
34406 TGTATCGATACA
1 TGTATCGATACA
34418 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:34545 original size:52 final size:52
Alignment explanation
Indices: 34457--34607 Score: 257
Period size: 52 Copynumber: 2.9 Consensus size: 52
34447 CTGCCAAAAA
* * *
34457 ATGTATCGATACATTACTCAAATGTATCGATACATGCAGGCAAATTTGCCTAG
1 ATGTATCGATACACTA-TGAAATGTATCGATACATGCAGGCAAATTTGCCCAG
34510 ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTTGCCCAG
*
34562 ATGTATCGATACACTATGAAATGTATCGATACATGCAGGTAAATTT
1 ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTT
34608 TCATATTTTG
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
52 79 0.84
53 15 0.16
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:38958 original size:168 final size:168
Alignment explanation
Indices: 38672--38985 Score: 513
Period size: 168 Copynumber: 1.9 Consensus size: 168
38662 TGCATCTTTC
*
38672 ACATGTCTCATCCACCATATTTGTGCATGTTTTTAAACATATTCATGCATTTCATTGCATTTTAA
1 ACATGTCTCATCCACCATATTTGTGCATGTTTTTAAACATAATCATGCATTTCATTGCATTTTAA
* * * *
38737 TGAGTTTCATAGCATAAAAATGTTGTCTTGAAATCTTAACATTTTTCTTCTTTGCTCAAACATGG
66 TGAGTTTCATAGCATAAAAATGCTGTCTTGAAATCTCAACATGTCTCTTCTTTGCTCAAACATGG
*
38802 TCATATCAACTTCCATAACATATTACTGCATGTTTTTG
131 TCATATCAAATTCCATAACATATTACTGCATGTTTTTG
* * **
38840 ACATGTCTTATCCACCATATTTGTGCATGTTTTTGAACATAATGGTGCATTTCATTGCATTTTAA
1 ACATGTCTCATCCACCATATTTGTGCATGTTTTTAAACATAATCATGCATTTCATTGCATTTTAA
*
38905 TGAGTTTCATAGCATAAAAATGCTGTCTTGAACATCTCAGCATGTCT-TTCTTTGCTCAAACATG
66 TGAGTTTCATAGCATAAAAATGCTGTCTTGAA-ATCTCAACATGTCTCTTCTTTGCTCAAACATG
38969 GTCATATCAAATTCCAT
130 GTCATATCAAATTCCAT
38986 GCATCCTATT
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
168 124 0.93
169 10 0.07
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (168 bp):
ACATGTCTCATCCACCATATTTGTGCATGTTTTTAAACATAATCATGCATTTCATTGCATTTTAA
TGAGTTTCATAGCATAAAAATGCTGTCTTGAAATCTCAACATGTCTCTTCTTTGCTCAAACATGG
TCATATCAAATTCCATAACATATTACTGCATGTTTTTG
Found at i:43883 original size:18 final size:17
Alignment explanation
Indices: 43849--43881 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
43839 TTTTATTATC
43849 AAATAATTTCTCCCCCT
1 AAATAATTTCTCCCCCT
43866 AAATAATTTCTCCCCC
1 AAATAATTTCTCCCCC
43882 CTTGCCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATAATTTCTCCCCCT
Found at i:50675 original size:21 final size:21
Alignment explanation
Indices: 50642--50682 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50632 CTAAGTAAAA
50642 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
50663 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
50683 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:50844 original size:53 final size:53
Alignment explanation
Indices: 50763--50898 Score: 236
Period size: 53 Copynumber: 2.5 Consensus size: 53
50753 GATTGCATAA
*
50763 TATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTTG
1 TATCGATACACAC-AATATGTATCGATACAGGACACTGGCAGTAGCCAAATTTG
*
50817 TATCGATACACACAATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTTG
1 TATCGATACACACAATATGTATCGATACAGGACACTGGCAGTAGCCAAATTTG
*
50870 TATCGATACACAAAATATGTATCGATACA
1 TATCGATACACACAATATGTATCGATACA
50899 TTGGTAGTAG
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (53 bp):
TATCGATACACACAATATGTATCGATACAGGACACTGGCAGTAGCCAAATTTG
Found at i:50947 original size:20 final size:21
Alignment explanation
Indices: 50922--50975 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
50912 AATCTCATTT
*
50922 TCACTGTTCATCA-CTATTCA
1 TCACTGTTCATCATCTATACA
*
50942 TCACTGTTCATGTATCTATACA
1 TCACTGTTCAT-CATCTATACA
50964 TCACT-TTCATCA
1 TCACTGTTCATCA
50976 ATGTGCACAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 12 0.41
21 6 0.21
22 11 0.38
ACGTcount: A:0.26, C:0.28, G:0.06, T:0.41
Consensus pattern (21 bp):
TCACTGTTCATCATCTATACA
Found at i:51586 original size:34 final size:35
Alignment explanation
Indices: 51523--51589 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
51513 CTAAGTGATT
51523 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
51559 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
51590 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:52959 original size:13 final size:13
Alignment explanation
Indices: 52941--52965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52931 CATTTTACTA
52941 TGTATCGATACAT
1 TGTATCGATACAT
52954 TGTATCGATACA
1 TGTATCGATACA
52966 ATGTCCAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:54590 original size:16 final size:16
Alignment explanation
Indices: 54569--54599 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
54559 CAACATTTCC
*
54569 TCTATTAAAACTTTTT
1 TCTATTAAAAATTTTT
54585 TCTATTAAAAATTTT
1 TCTATTAAAAATTTT
54600 GAAAGCCTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (16 bp):
TCTATTAAAAATTTTT
Found at i:59280 original size:19 final size:20
Alignment explanation
Indices: 59236--59288 Score: 83
Period size: 19 Copynumber: 2.7 Consensus size: 20
59226 TGCCAGTTTC
59236 ATGTATCGATACAATTGAGT
1 ATGTATCGATACAATTGAGT
59256 ATGTATCGATACAA-TGAAG-
1 ATGTATCGATACAATTG-AGT
59275 ATGTATCGATACAA
1 ATGTATCGATACAA
59289 AGCATAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAATTGAGT
Found at i:62025 original size:19 final size:20
Alignment explanation
Indices: 62001--62040 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
61991 ATTGGTCCTT
62001 AAAATG-TTAAAAATGCCTA
1 AAAATGTTTAAAAATGCCTA
*
62020 AAAATGTTTAAAATTGCCTA
1 AAAATGTTTAAAAATGCCTA
62040 A
1 A
62041 GCTAAATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
AAAATGTTTAAAAATGCCTA
Found at i:62314 original size:11 final size:10
Alignment explanation
Indices: 62292--62322 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
62282 CCTTAAGATG
62292 TTAAAAATGT
1 TTAAAAATGT
62302 TTAAAACATGT
1 TTAAAA-ATGT
62313 TTAAAAATGT
1 TTAAAAATGT
62323 ATGAAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.39
Consensus pattern (10 bp):
TTAAAAATGT
Found at i:62316 original size:21 final size:21
Alignment explanation
Indices: 62292--62331 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62282 CCTTAAGATG
*
62292 TTAAAAATGTTTAAAACATGT
1 TTAAAAATGTATAAAACATGT
*
62313 TTAAAAATGTATGAAACAT
1 TTAAAAATGTATAAAACAT
62332 TCCTCACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35
Consensus pattern (21 bp):
TTAAAAATGTATAAAACATGT
Found at i:64838 original size:81 final size:79
Alignment explanation
Indices: 64753--65130 Score: 301
Period size: 81 Copynumber: 4.7 Consensus size: 79
64743 GATTAATATG
* * * * * *
64753 AAACCTACAGGTCAATAAATTTAAAAGGTTGATCGGGATGAAACCTTATGAGTCAACAGATAAAA
1 AAACCTACAAGTCAACAAGTTT-AAAGGTTGA-CGAGATGAAATCATATGAGTCAACAGATAAAA
**
64818 AAGGTTGATTGAGACA
64 AAGGTTGACCGAGACA
* * *
64834 AAACCTAGAAGTCAACAAGTTTAAAGATTGACAAAGATGAAATCATATGAGTCAAC-GAATGAAA
1 AAACCTACAAGTCAACAAGTTTAAAGGTTGAC-GAGATGAAATCATATGAGTCAACAG-AT-AAA
*
64898 AAAGGTTGACCGAGATA
63 AAAGGTTGACCGAGACA
* * * *
64915 AAACCTACAAGTCAACAAGTTTAAGGGTTGACTAGAT-AAAGTGATATGAGTCAACAGATAAGAA
1 AAACCTACAAGTCAACAAGTTTAAAGGTTGACGAGATGAAA-TCATATGAGTCAACAGATAAAAA
* * *
64979 AGATTGACCGGGATA
65 AGGTTGACCGAGACA
* * * ** *
64994 AAACTTACAAGTTAACAAGTTTAAAAGGTTGATCGAAATGAAATCATGCGAGTCAACGGATAAAA
1 AAACCTACAAGTCAACAAGTTT-AAAGGTTGA-CGAGATGAAATCATATGAGTCAACAGATAAAA
** ** *
65059 GGGGTTGATTGGGACA
64 AAGGTTGACCGAGACA
* * * * * * * * *
65075 AAACATAGAAATTAACAAGTTTAAGGGACTAACCGAGATAAAACCATATGAGTCAA
1 AAACCTACAAGTCAACAAGTTTAAAGG-TTGA-CGAGATGAAATCATATGAGTCAA
65131 TTGATGACTA
Statistics
Matches: 240, Mismatches: 48, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
79 42 0.17
80 60 0.25
81 135 0.56
82 3 0.01
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.22
Consensus pattern (79 bp):
AAACCTACAAGTCAACAAGTTTAAAGGTTGACGAGATGAAATCATATGAGTCAACAGATAAAAAA
GGTTGACCGAGACA
Found at i:65094 original size:160 final size:160
Alignment explanation
Indices: 64799--65101 Score: 358
Period size: 160 Copynumber: 1.9 Consensus size: 160
64789 GATGAAACCT
* ** *
64799 TATGAGTCAACAGATAAAAAAGGTTGATTGAGACAAAACCTAGAAGTCAACAAGTTTAAAGATTG
1 TATGAGTCAACAGATAAAAAAGATTGACCGAGACAAAACCTACAAGTCAACAAGTTTAAAGATTG
* * * *
64864 ACAAAGATGAAATCATATGAGTCAACGAATGAAAAAAGGTTGACCGAGATAAAACCTACAAGTCA
66 ACAAAGATGAAATCATACGAGTCAACGAATGAAAAAAGGTTGACCGAGACAAAACATACAAATCA
64929 ACAAGTTTAAGGGTTGACTAGATAAAGTGA
131 ACAAGTTTAAGGGTTGACTAGATAAAGTGA
* * * * * *
64959 TATGAGTCAACAGATAAGAAAGATTGACCGGGATAAAACTTACAAGTTAACAAGTTTAAAAGGTT
1 TATGAGTCAACAGATAAAAAAGATTGACCGAGACAAAACCTACAAGTCAACAAGTTT-AAAGATT
* * * ** ** * *
65024 GATCGAA-ATGAAATCATGCGAGTCAACGGAT-AAAAGGGGTTGATTGGGACAAAACATAGAAAT
65 GA-CAAAGATGAAATCATACGAGTCAACGAATGAAAAAAGGTTGACCGAGACAAAACATACAAAT
*
65087 TAACAAGTTTAAGGG
129 CAACAAGTTTAAGGG
65102 ACTAACCGAG
Statistics
Matches: 117, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
160 85 0.73
161 29 0.25
162 3 0.03
ACGTcount: A:0.45, C:0.11, G:0.22, T:0.22
Consensus pattern (160 bp):
TATGAGTCAACAGATAAAAAAGATTGACCGAGACAAAACCTACAAGTCAACAAGTTTAAAGATTG
ACAAAGATGAAATCATACGAGTCAACGAATGAAAAAAGGTTGACCGAGACAAAACATACAAATCA
ACAAGTTTAAGGGTTGACTAGATAAAGTGA
Found at i:65241 original size:78 final size:79
Alignment explanation
Indices: 65140--65319 Score: 181
Period size: 78 Copynumber: 2.3 Consensus size: 79
65130 ATTGATGACT
* * * *
65140 AGTTTAAAGGGTT-AACTGGACAAAAATTAAAAGTCAATAAGTTTAAG-GGTTGA-CCAGGATGA
1 AGTTT-AAGGGTTGACCAGGACAAAAACTAAAAGTCAACAAGTTTAAGCGGTTGATCC-GGATGA
**
65202 AATA-TACAAGTTAACA
64 AA-ACTACAAGGCAACA
* * * *
65218 AGTTTAAGGGTTGACCAGGAC-AAACCTACAAGTCAACGAGTTTAAGCGGTTGATTCGGATGAAA
1 AGTTTAAGGGTTGACCAGGACAAAAACTAAAAGTCAACAAGTTTAAGCGGTTGATCCGGATGAAA
65282 ACTACAAGGCAACA
66 ACTACAAGGCAACA
* **
65296 AGTTTAAAGGTTGACTGGGACAAA
1 AGTTTAAGGGTTGACCAGGACAAA
65320 CTTGCAATAA
Statistics
Matches: 84, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
77 28 0.33
78 53 0.63
79 3 0.04
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (79 bp):
AGTTTAAGGGTTGACCAGGACAAAAACTAAAAGTCAACAAGTTTAAGCGGTTGATCCGGATGAAA
ACTACAAGGCAACA
Found at i:65300 original size:40 final size:39
Alignment explanation
Indices: 65170--65310 Score: 162
Period size: 39 Copynumber: 3.6 Consensus size: 39
65160 CAAAAATTAA
*
65170 AAGTCAATAAGTTTAAGGGTTGACCAGGATGAAATA-TAC
1 AAGTCAACAAGTTTAAGGGTTGACCAGGATGAAA-ACTAC
* * *
65209 AAGTTAACAAGTTTAAGGGTTGACCAGGA-CAAACCTAC
1 AAGTCAACAAGTTTAAGGGTTGACCAGGATGAAAACTAC
* *
65247 AAGTCAACGAGTTTAAGCGGTTGATTC-GGATGAAAACTAC
1 AAGTCAACAAGTTTAAG-GGTTGA-CCAGGATGAAAACTAC
* *
65287 AAGGCAACAAGTTTAAAGGTTGAC
1 AAGTCAACAAGTTTAAGGGTTGAC
65311 TGGGACAAAC
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
38 21 0.25
39 42 0.49
40 22 0.26
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (39 bp):
AAGTCAACAAGTTTAAGGGTTGACCAGGATGAAAACTAC
Found at i:65320 original size:78 final size:77
Alignment explanation
Indices: 65170--65320 Score: 189
Period size: 78 Copynumber: 1.9 Consensus size: 77
65160 CAAAAATTAA
* ** *
65170 AAGTCAATAAGTTTAAGGGTTGACCAGGATGAAATATACAAGTTAACAAGTTTAAGGGTTGACCA
1 AAGTCAACAAGTTTAAGGGTTGACCAGGATGAAATATACAAGGCAACAAGTTTAAAGGTTGACCA
65235 GGACAAACCTAC
66 GGACAAACCTAC
* *
65247 AAGTCAACGAGTTTAAGCGGTTGATTC-GGATGAAA-ACTACAAGGCAACAAGTTTAAAGGTTGA
1 AAGTCAACAAGTTTAAG-GGTTGA-CCAGGATGAAATA-TACAAGGCAACAAGTTTAAAGGTTGA
**
65310 CTGGGACAAAC
63 CCAGGACAAAC
65321 TTGCAATAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
77 16 0.25
78 46 0.73
79 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (77 bp):
AAGTCAACAAGTTTAAGGGTTGACCAGGATGAAATATACAAGGCAACAAGTTTAAAGGTTGACCA
GGACAAACCTAC
Found at i:68641 original size:49 final size:49
Alignment explanation
Indices: 68584--68692 Score: 218
Period size: 49 Copynumber: 2.2 Consensus size: 49
68574 GATGTATCGA
68584 TATCGATACATTTGGTAAAAAAAAGAATGTATAGATACATTCACACATG
1 TATCGATACATTTGGTAAAAAAAAGAATGTATAGATACATTCACACATG
68633 TATCGATACATTTGGTAAAAAAAAGAATGTATAGATACATTCACACATG
1 TATCGATACATTTGGTAAAAAAAAGAATGTATAGATACATTCACACATG
68682 TATCGATACAT
1 TATCGATACAT
68693 ATACTGTTCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 60 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (49 bp):
TATCGATACATTTGGTAAAAAAAAGAATGTATAGATACATTCACACATG
Found at i:69094 original size:41 final size:40
Alignment explanation
Indices: 69017--69147 Score: 122
Period size: 41 Copynumber: 3.2 Consensus size: 40
69007 GTGTCTACAT
*
69017 AAGTCAACAAGTTAGAGAGGTTGACTAGTACA--AAACCATA
1 AAGTCAACGAGTTAGAGAGGTTGACTA--ACATGAAACCATA
* *
69057 CAAGTCAACGAGTTAGAAAGGTTGACCAACATGAAACCATA
1 -AAGTCAACGAGTTAGAGAGGTTGACTAACATGAAACCATA
* * * * * *
69098 TGAGTTAATGACTTAGAGCGGTTGACTAAGATGAAACCATA
1 -AAGTCAACGAGTTAGAGAGGTTGACTAACATGAAACCATA
69139 AGAGTCAAC
1 A-AGTCAAC
69148 AAAAGGTGAC
Statistics
Matches: 72, Mismatches: 15, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
39 3 0.04
41 69 0.96
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21
Consensus pattern (40 bp):
AAGTCAACGAGTTAGAGAGGTTGACTAACATGAAACCATA
Found at i:69639 original size:65 final size:65
Alignment explanation
Indices: 69125--69644 Score: 259
Period size: 66 Copynumber: 8.0 Consensus size: 65
69115 GCGGTTGACT
* ** * ** * *
69125 AAGATGAAACCATAAGAGTCAACAAAAGGTGACCAGGGCAAAACCTAAATCGAAAAAGAGTTGGC
1 AAGATGAAACCATATGAACCAACAAAAGGTAACCAGGGTGAAACCTAAGTCAAAAAAGAGTT-GC
69190 C
65 C
* * * * ** ** * * *
69191 AGGAAGAAACCATACGAACCAA-TAAAGGATAACCAAAGCAAAACATAAGTTGAAAATAG-GTTG
1 AAGATGAAACCATATGAACCAACAAAAGG-TAACCAGGGTGAAACCTAAG-TCAAAAAAGAGTT-
69254 GCC
63 GCC
* * * ** * * * * * *
69257 AGGGTGAAACAATATGAAAGAAC-TAAGGTGACCAAGGTGAAACCTGAGTCAAAAATGAGTTGGT
1 AAGATGAAACCATATGAACCAACAAAAGGTAACCAGGGTGAAACCTAAGTCAAAAAAGAGTT-GC
*
69321 T
65 C
* ** * * ** * *
69322 GAGATGAAACCATATGAACCAACAAAA-GTGGCTAAGGCAAAATCTAAG-CTGAAAAAGAGTTGA
1 AAGATGAAACCATATGAACCAACAAAAGGTAACCAGGGTGAAACCTAAGTC-AAAAAAGAGTTG-
*
69385 TC
64 CC
** * ** *
69387 GGGA-GAAACCATATGAACTAA-AAAAGGGTAAATAGGGTGAAACTTAAGTCAAAAAA-AGGTTG
1 AAGATGAAACCATATGAACCAACAAAA-GGTAACCAGGGTGAAACCTAAGTCAAAAAAGA-GTTG
69449 ACC
64 -CC
* * * * * * *
69452 GAGATGAAACCATATGAACCAACTAAGGGTAACTAGGGT-AGAACCTAAGTCGAAAAGGAATTGG
1 AAGATGAAACCATATGAACCAACAAAAGGTAACCAGGGTGA-AACCTAAGTCAAAAAAGAGTT-G
69516 CC
64 CC
* ** * * * * * *
69518 AAGATAAAACCATACAAACCAACAAAGGGTGACCAAGATGAAACCTAAGTCGAAAAACAGTTGCC
1 AAGATGAAACCATATGAACCAACAAAAGGTAACCAGGGTGAAACCTAAGTCAAAAAAGAGTTGCC
* * *
69583 TAAGATGTAACCATATGAACCAA-AAAAGGTGACCATGGTGAAACCTAAGTCAAAAAAGAGTT
1 -AAGATGAAACCATATGAACCAACAAAAGGTAACCAGGGTGAAACCTAAGTCAAAAAAGAGTT
69645 ATCCAGGATA
Statistics
Matches: 346, Mismatches: 90, Indels: 37
0.73 0.19 0.08
Matches are distributed among these distances:
63 4 0.01
64 25 0.07
65 134 0.39
66 172 0.50
67 11 0.03
ACGTcount: A:0.46, C:0.16, G:0.22, T:0.16
Consensus pattern (65 bp):
AAGATGAAACCATATGAACCAACAAAAGGTAACCAGGGTGAAACCTAAGTCAAAAAAGAGTTGCC
Found at i:71434 original size:20 final size:20
Alignment explanation
Indices: 71409--71462 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
71399 GTTACAAGCA
*
71409 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
71429 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
71449 ATGTATCGATACAA
1 ATGTATCGATACAA
71463 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:72440 original size:142 final size:139
Alignment explanation
Indices: 72162--72448 Score: 348
Period size: 142 Copynumber: 2.0 Consensus size: 139
72152 CTTGAATCCC
* * *
72162 TAGACTTCTTCAAATAATTTTCTACTTGCCAAGATCTTAATAGTCTTCATAAATAATACTAAAAA
1 TAGACTTCTTAAAATAATTTTCTACTT----AGATCTCAATAGTCTTCATAAACAATACTAAAAA
* **
72227 ATTTTTTGCTTTGCTCTAAACCACTTAATTTTTTGGATTTTCACCCTAGAGCTTTTTTTTTTTTT
62 ATTTTTTGCTTTGCTCTAAACCACCTAATTTTTTGGATTTTCACCCTAGAGC----TTTTTTTGC
72292 C-ATTTTTTTGCTTTTT
123 CAATTTTTTTGCTTTTT
* *
72308 TAGACTTCTTAAAATTAATTTTCTACTT-GATCTCAATAGTCTTCATAAACAATACTGAAATATT
1 TAGACTTCTTAAAA-TAATTTTCTACTTAGATCTCAATAGTCTTCATAAACAATACTAAAAAATT
* *
72372 TTTTG-TGTTGCTCTAGACTACCTAATTTTTTGGATTTTCACCCTAGAGCTTTATTCTTGCC-AT
65 TTTTGCT-TTGCTCTAAACCACCTAATTTTTTGGATTTTCACCCTAGAGCTTT-TT-TTGCCAAT
72435 TTTTTTGCTTTTT
127 TTTTTTGCTTTTT
72448 T
1 T
72449 CTTTCCCTTT
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
138 3 0.02
139 2 0.02
140 19 0.15
141 1 0.01
142 76 0.60
146 13 0.10
147 13 0.10
ACGTcount: A:0.25, C:0.17, G:0.09, T:0.49
Consensus pattern (139 bp):
TAGACTTCTTAAAATAATTTTCTACTTAGATCTCAATAGTCTTCATAAACAATACTAAAAAATTT
TTTGCTTTGCTCTAAACCACCTAATTTTTTGGATTTTCACCCTAGAGCTTTTTTTGCCAATTTTT
TTGCTTTTT
Found at i:72450 original size:22 final size:22
Alignment explanation
Indices: 72419--72468 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
72409 TCACCCTAGA
*
72419 GCTTTATTCTTGCCATTTTTTT
1 GCTTTTTTCTTGCCATTTTTTT
* *
72441 GCTTTTTTCTTTCCCTTTTTTT
1 GCTTTTTTCTTGCCATTTTTTT
72463 -CTTTTT
1 GCTTTTT
72469 GGATTGGTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.04, C:0.20, G:0.06, T:0.70
Consensus pattern (22 bp):
GCTTTTTTCTTGCCATTTTTTT
Found at i:72735 original size:13 final size:12
Alignment explanation
Indices: 72711--72761 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
72701 GAATACTACA
*
72711 TTTCTTTATTTC
1 TTTCTTTTTTTC
72723 TTTGCTTTTTTTC
1 TTT-CTTTTTTTC
* *
72736 CTTCTCATTTTTC
1 TTTCT-TTTTTTC
72749 TTT-TTTTTTTC
1 TTTCTTTTTTTC
72760 TT
1 TT
72762 ACTATTTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
11 8 0.25
12 6 0.19
13 18 0.56
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTCTTTTTTTC
Found at i:72768 original size:23 final size:24
Alignment explanation
Indices: 72728--72783 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
72718 ATTTCTTTGC
* *
72728 TTTTTTTCCTTCTCATTTT-TCTT
1 TTTTTTTTCTTCTCATTTTCACTT
72751 TTTTTTTTCTTACT-ATTTTCACTT
1 TTTTTTTTCTT-CTCATTTTCACTT
*
72775 TTTCTTTTC
1 TTTTTTTTC
72784 ATTTCATGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTTTTTCTTCTCATTTTCACTT
Found at i:74603 original size:13 final size:13
Alignment explanation
Indices: 74585--74609 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74575 ATTACTCAAA
74585 TGTATCGATACAT
1 TGTATCGATACAT
74598 TGTATCGATACA
1 TGTATCGATACA
74610 CCGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:83815 original size:19 final size:18
Alignment explanation
Indices: 83791--83853 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
83781 AAACAGTAAC
83791 TGTATCGATACATAGGTGT
1 TGTATCGATACATA-GTGT
83810 TGTATCGATACA-A----
1 TGTATCGATACATAGTGT
*
83823 TGTATCGAAACATAAGTGT
1 TGTATCGATACAT-AGTGT
83842 TGTATCGATACA
1 TGTATCGATACA
83854 ATGTATCGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 11 0.31
15 1 0.03
18 1 0.03
19 23 0.64
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (18 bp):
TGTATCGATACATAGTGT
Found at i:83836 original size:32 final size:32
Alignment explanation
Indices: 83791--83861 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
83781 AAACAGTAAC
* *
83791 TGTATCGATACATAGGTGTTGTATCGATACAA
1 TGTATCGAAACATAAGTGTTGTATCGATACAA
83823 TGTATCGAAACATAAGTGTTGTATCGATACAA
1 TGTATCGAAACATAAGTGTTGTATCGATACAA
83855 TGTATCG
1 TGTATCG
83862 CTACGAAGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (32 bp):
TGTATCGAAACATAAGTGTTGTATCGATACAA
Found at i:83908 original size:20 final size:20
Alignment explanation
Indices: 83883--83977 Score: 190
Period size: 20 Copynumber: 4.8 Consensus size: 20
83873 CTGCCAAGGA
83883 AATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
83903 AATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
83923 AATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
83943 AATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
83963 AATGTATCGATACAT
1 AATGTATCGATACAT
83978 GTAGGCAAAT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 75 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTACTC
Done.