Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1228
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 133656
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
File 1 of 2
Found at i:1073 original size:159 final size:154
Alignment explanation
Indices: 745--7197 Score: 1507
Period size: 159 Copynumber: 40.6 Consensus size: 154
735 CATCATTAGA
* * * **
745 ATACATGATATTGATGCTTTGGTGTCGCGAGAAAATGTTTTCTTTC-CACTGTTTTTGATAGAAG
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTTCAC-CAATTTTTG-TA-AAG
* * ** * * *
809 T-AAAGTTTGTCTCTTAAATAAGACAAACAAAAATTGTCATGCTAAT-CCCCATTCTTTTCAAGA
62 TCAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGA
* * * * *
872 TTAGGCACCAT-AA-ACTTTGTCATCTAATAAGT
123 TTAGGCACTATAAACACATTCTC--CTTATAAGG
* * *
904 ATACATGATTATTGATGCTTTGGTTTCGTAAGGAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
1 ATACATGA-TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * ** **
969 TAAGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATGCTC--CATTCTTTTCATGATTA
*
1034 GGCACTATAAACACATTCTCCTTATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * * * * * * *
1063 ATAAACGATTATTCAACGATTT-CTTTTGCATGGAAATCCTTTCTTT-ACGCTAGTTTCCT-TAA
1 ATACATGA-TATT-GATGCTTTGGTTTCGCA-AGAAATGCTTTCTTTCAC-C-AATTT-TTGTAA
* * * ** * *** ** * * *
1125 TA-TCAAAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGA
60 -AGTCAAAGTTCGTCCT-TAAATGAGACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-A
*
1189 -GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
120 TGATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * **
1223 ATACATGACATTGATGCTTTGGTGTCGCGAGAAATGTTTTCTTTC-CACTGTTTTTGATAGAAGT
1 ATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTTCAC-CAATTTTTG-TA-AAGT
* * * *
1287 -AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-CCATTCTTTTCATGAT
63 CAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGAT
* ** * * *
1349 TAGGCACCATAAAC-TTTGTCTTCTAATAAGT
124 TAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * *
1380 ATACACGATTATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
1 ATACATGA-TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * * * **
1445 TAAGTTCGTGCATCAAATGAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATG--CTCCATTCTTTTCATGATTA
* *
1510 GGCCACTATAAACACATTCTCCTCATTAGG
126 GG-CACTATAAACACATTCTCCTTATAAGG
* * * * * ** * * *
1540 ATAAAAGATATTCACGATTTTCTTTTGCATGGAAAT-CTTTTCTTT-ACGCTATTTTCCT-TAAT
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGC-TTTCTTTCAC-CAATTTT--TGTAA-
* ** ** * * ** * * *
1602 A-TCAAAATTC-AACAAATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAA
60 AGTCAAAGTTCGTCCTTA-AATGA-GACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTCAT
*
1665 GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
121 GATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * * *
1699 ATACATGACATTGATGCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAG
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTTC-ACCAATTTTTG-TA-AAG
* * * * *
1763 T-AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCATTCTTTTCATGA
62 TCAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGA
* *** * * *
1826 TTAGGCACCATAAA-GTTTGTCTTCTAATAAGT
123 TTAGGCACTATAAACACAT-TCTCCTTATAAGG
* *
1858 ATACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
1 ATACATGA-TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * * * ** *
1923 TAAGTTCGTGCATGAAATGAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGAATA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATG--CTCCATTCTTTTCATGATTA
* *
1988 GGCACTATAAACACATTCTCCTCATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * ** * * *
2017 ATAAACGATATTCACGATTTTCTTTTGCATGGAAAT-CTTTTCTTT-ACGCTATTTTCCT-TAAT
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGC-TTTCTTTCAC-CAATTTT--TGTAA-
** ** * * ** * * *
2079 A-TCAAA-TTC-AACAAATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAA
60 AGTCAAAGTTCGTCCTTA-AATGA-GACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTCAT
*
2141 GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
121 GATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * * *
2175 ATACATGACATTGATGCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAG
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTTC-ACCAATTTTTG-TA-AAG
* * * ** * * *
2239 T-AAAGTTTGTCTTTTAAATAAGACAAACAAAAATTGTCATGCTAAT-CCCCATTCTTTTCAAGA
62 TCAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGA
* * * * *
2302 TTAGGCACCAT-AA-ACTTTGTCATCTAATAAGT
123 TTAGGCACTATAAACACATTCTC--CTTATAAGG
* * *
2334 ATACATGATTATTGATGCTTTGGTTTCGTAAGGAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
1 ATACATGA-TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * ** **
2399 TAAGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATGCTC--CATTCTTTTCATGATTA
*
2464 GGCACTATAAACACATTCTCCTTATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * ** * * * * *
2493 ATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTT-ACGCTAGTTTCCT-TAATA
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGCTTTCTTTCAC-C-AATTT-TTGTAA-A
* * ** * *** ** * * *
2556 -TCAAA-TTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGA-G
61 GTCAAAGTTCGTCCT-TAAATGAGACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-ATG
*
2618 ATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
122 ATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * **
2651 ATACATGACATTGATGCTTTGGTGTCGCGAGAAAATGTTTTCTTTC-CACTGTTTTTGATAGAAG
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTTCAC-CAATTTTTG-TA-AAG
* * * *
2715 T-AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-CCATTCTTTTCATGA
62 TCAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGA
* ** * * *
2777 TTAGGCACCATAAAC-TTTGTCTTCTAATAAGT
123 TTAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * *
2809 ATACACGATTATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
1 ATACATGA-TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * * * **
2874 TAAGTTCGTGCATCAAATGAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATG--CTCCATTCTTTTCATGATTA
* *
2939 GGCACTATAAACACATTCTCCTCATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * ** * * *
2968 ATAAAAGATATTCACGATTTTCTTTTGCATGGAAAT-CTTTTCTTT-ACGCTATTTTCCT-TAAT
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGC-TTTCTTTCAC-CAATTTT--TGTAA-
* ** ** * * ** * * *
3030 A-TCAAAATTC-AACAAATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAA
60 AGTCAAAGTTCGTCCTTA-AATGA-GACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTCAT
*
3093 GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
121 GATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * * *
3127 ATACATGACATTGATGCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAG
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTTC-ACCAATTTTTG-TA-AAG
* * * * *
3191 T-AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCATTCTTTTCATGA
62 TCAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGA
* *** * * *
3254 TTAGGCACCATAAA-GTTTGTCTTCTAATAAGT
123 TTAGGCACTATAAACACAT-TCTCCTTATAAGG
* *
3286 ATACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
1 ATACATGA-TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * * ** **
3351 TAAGTTTGTGCCTCAAATGAGTCAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATGCTC--CATTCTTTTCATGATTA
* *
3416 GGCACTATAAACACATTCTCCTCATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * ** * * * * *
3445 ATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTT-ACGCTAGTTTCCT-TAATA
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGCTTTCTTTCAC-C-AATTT-TTGTAA-A
* * * ** * *** ** * * *
3508 -TCAAAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGA-G
61 GTCAAAGTTCGTCCT-TAAATGAGACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-ATG
*
3571 ATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
122 ATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * ** *
3604 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGT
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTT-CACCAATTTTTGTA-AAGT
* * * * *
3669 -AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCATTCTTTTCATGAT
63 CAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGAT
* ** * * *
3732 TAGGCACCATAAAC-TTTGTCTTCTCATAAGT
124 TAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * * *
3763 ATACATGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTC
1 ATACAT-GATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * * * * **
3828 TAAGTTCGTGCC-TCAATGAGGCAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATG--CTCCATTCTTTTCATGATTA
* * *
3892 GGGACTAT-AACACATTCTCCTCATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * ** * *
3920 ATAAATGAGATTCACGATTTTCTTTTGCATGGAAAT-CTTTTCTTTGC-CTC-ATTTTCCT-TAA
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGC-TTTCTTT-CAC-CAATTTT--TGTAA
* * * * * ***** * * **
3981 TA-TTAAAATTCATCC-CATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGCTTTTCG
60 -AGTCAAAGTTCGTCCTTA-AATGA-GACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-
*
4044 A-GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
119 ATGATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * *
4079 CTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAG
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTT-CACCAATTTTTG-TA-AAG
* * * * * *
4143 T-AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCATTCCTTTCATGA
62 TCAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGA
** * *
4206 TTAGGCACTATAAAC-TTTGTCTCCTCATAGGG
123 TTAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * * * *
4238 ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTCT
1 ATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTCA
* ** ** * * ** *
4303 ATGTTTATACCGCAAATGAGACAAACGAGGATTCTAGTCATGATG-TTCATTCTTTTTGTAATTA
65 AAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGT-A--ATGCTCCATTCTTTTCATGATTA
* * * ** * *
4367 TGG-GCTATAACCACAATCTTGTCATTAGG
126 -GGCACTATAAACACATTCTCCTTATAAGG
* * * * ** * * *
4396 ATAAATGATATTCAAGATTTTTTTTTGCATGGAAAT-CTTTTCTTTGC-CCTATTTTCCT-TAAT
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGC-TTTCTTT-CACCAATTTT--TGTAA-
* * * * ** *** * * * *
4458 A-TCAAAATTCATCC-CATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGA
60 AGTCAAAGTTCGTCCTTA-AATGA-GACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-A
*
4521 -GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
120 TGATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * ** *
4555 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCCCCGTTTTTTATAGAAGT
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTT-CACCAATTTTTGTA-AAGT
* * * * * * * * *
4620 -AAAGTTTGTCTCATAAATAAGATAAACAAGAATTGTCATGCTAAT-CCCCATTCTTTTCATTAC
63 CAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGAT
* ** * * *
4683 TAGGCACCATAAAC-TTTGTCTTCTCATAAGT
124 TAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * *
4714 ATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTC
1 ATACATGA-TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * ** **
4779 TAAGTTCGTGCCTCAAATGAGTCAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATGCTC--CATTCTTTTCATGATTA
* *
4844 GGCACTATAAACACATTCTCCTCATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * ** * * * * *
4873 ATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTT-ACGCTAGTTTCCT-TAATA
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGCTTTCTTTCAC-C-AATTT-TTGTAA-A
* * * ** * *** ** * * *
4936 -TCAAAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGA-G
61 GTCAAAGTTCGTCCT-TAAATGAGACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-ATG
*
4999 ATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
122 ATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * ** *
5032 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGT
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTT-CACCAATTTTTGTA-AAGT
* * * * *
5097 -AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCATTCTTTTCATGAT
63 CAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGAT
* ** * * *
5160 TAGGCACCATAAAC-TTTGTCTTCTCATAAGT
124 TAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * * *
5191 ATACATGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTC
1 ATACAT-GATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * * * * **
5256 TAAGTTCGTGCC-TCAATGAGGCAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATG--CTCCATTCTTTTCATGATTA
* * *
5320 GGGACTATAAACACATTCTCCTCATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * ** * *
5349 ATAAATGAGATTCATGATTTTCTTTTGCATGGAAAT-CTTTTCTTTGC-CTC-ATTTTCCT-TAA
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGC-TTTCTTT-CAC-CAATTTT--TGTAA
* * * * * ***** * * **
5410 TA-TTAAAATTCATCC-CATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGCTTTTCG
60 -AGTCAAAGTTCGTCCTTA-AATGA-GACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-
*
5473 A-GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
119 ATGATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * *
5508 CTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAG
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTT-CACCAATTTTTG-TA-AAG
* * * * * *
5572 T-AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCATTCCTTTCATGA
62 TCAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGA
** * *
5635 TTAGGCACTATAAAC-TTTGTCTCCTCATAGGG
123 TTAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * * * *
5667 ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTCT
1 ATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTCA
* ** ** * * ** *
5732 ATGTTTATACCGCAAATGAGACAAACGAGGATTCTAGTCATGATG-TTCATTCTTTTTGTAATTA
65 AAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGT-A--ATGCTCCATTCTTTTCATGATTA
* * * ** * *
5796 TGG-GCTATAACCACAATCTTGTCATTAGG
126 -GGCACTATAAACACATTCTCCTTATAAGG
* * * * ** * * *
5825 ATAAATGATATTCAAGATTTTTTTTTGCATGGAAAT-CTTTTCTTTGC-CCTATTTTCCT-TAAT
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGC-TTTCTTT-CACCAATTTT--TGTAA-
* * * * ** *** * * * *
5887 A-TCAAAATTCATCC-CATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGA
60 AGTCAAAGTTCGTCCTTA-AATGA-GACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-A
*
5950 -GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
120 TGATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * ** *
5984 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCCCCGTTTTTTATAGAAGT
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTT-CACCAATTTTTGTA-AAGT
* * * * * * * * *
6049 -AAAGTTTGTCTCATAAATAAGATAAACAAGAATTGTCATGCTAAT-CCCCATTCTTTTCATTAC
63 CAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGAT
* ** * * *
6112 TAGGCACCATAAAC-TTTGTCTTCTCATAAGT
124 TAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * *
6143 ATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTC
1 ATACATGA-TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * ** **
6208 TAAGTTCGTGCCTCAAATGAGTCAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATGCTC--CATTCTTTTCATGATTA
* *
6273 GGCACTATAAACACATTCTCCTCATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * ** * * * * *
6302 ATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTT-ACGCTAGTTTCCT-TAATA
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGCTTTCTTTCAC-C-AATTT-TTGTAA-A
* * * ** * *** ** * * *
6365 -TCAAAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGA-G
61 GTCAAAGTTCGTCCT-TAAATGAGACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-ATG
*
6428 ATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
122 ATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * ** *
6461 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGT
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTT-CACCAATTTTTGTA-AAGT
* * * * *
6526 -AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCATTCTTTTCATGAT
63 CAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGAT
* ** * * *
6589 TAGGCACCATAAAC-TTTGTCTTCTCATAAGT
124 TAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * * *
6620 ATACATGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTC
1 ATACAT-GATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTC
* * * * * * **
6685 TAAGTTCGTGCC-TCAATGAGGCAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTA
64 AAAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAGTAATG--CTCCATTCTTTTCATGATTA
* * *
6749 GGGACTATAAACACATTCTCCTCATTAGG
126 GGCACTATAAACACATTCTCCTTATAAGG
* * * * * ** * *
6778 ATAAATGAGATTCACGATTTTCTTTTGCATGGAAAT-CTTTTCTTTGC-CTC-ATTTTCCT-TAA
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAATGC-TTTCTTT-CAC-CAATTTT--TGTAA
* * * * * ***** * * **
6839 TA-TTAAAATTCATCC-CATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGCTTTTCG
60 -AGTCAAAGTTCGTCCTTA-AATGA-GACAAACAAGGATTCTAGT-A-ATGCTCCATTCTTTTC-
*
6902 A-GATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGG
119 ATGATTAGGCA-CTATA-AACACATTCTCCTT-ATAAGG
* * * * *
6937 CTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAG
1 ATACATGATATTGATGCTTTGGTTTCGCAAG-AAATGCTTTCTTT-CACCAATTTTTG-TA-AAG
* * * * * *
7001 T-AAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCATTCCTTTCATGA
62 TCAAAGTTCGTC-CTTAAATGAGACAAACAAGGATTCT-A-G-TAATGCTCCATTCTTTTCATGA
** * *
7064 TTAGGCACTATAAAC-TTTGTCTCCTCATAGGG
123 TTAGGCACTATAAACACAT-TCTCCTTATAAGG
* * * * * *
7096 ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTCT
1 ATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-TCACCAATTTTTGTAAAGTCA
** ** *
7161 AAGTTTATACCGCAAATGAGACAAACGAGGATTCTAG
65 AAGTTCGT-CCTTAAATGAGACAAACAAGGATTCTAG
7198 GATAAACGAT
Statistics
Matches: 4388, Mismatches: 1397, Indels: 1021
0.64 0.21 0.15
Matches are distributed among these distances:
155 19 0.00
156 63 0.01
157 235 0.05
158 1102 0.25
159 2282 0.52
160 585 0.13
161 83 0.02
162 19 0.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (154 bp):
ATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTTCACCAATTTTTGTAAAGTCAA
AGTTCGTCCTTAAATGAGACAAACAAGGATTCTAGTAATGCTCCATTCTTTTCATGATTAGGCAC
TATAAACACATTCTCCTTATAAGG
Found at i:3430 original size:477 final size:477
Alignment explanation
Indices: 1--7197 Score: 11290
Period size: 476 Copynumber: 15.1 Consensus size: 477
* *
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGAAAAACGGAGG--TCTAGT
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC-GAGGATTCTAGT
64 AATGATCTTCATTC-TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATA
65 AATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATA
*
128 TTCACGATTTTCTTTTGCATGGAAATC-TTTCTTTACGCTATTTTCCTTAATATC-AAATTCAAC
130 TTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATC
** * * * *
191 AAATAATTATGCCAAAGCTTTGATTCTCGTAAGAGACTCCCATGCTTTTCAAGATTGGGAGCTAA
195 CCATAATTATGAC-AAGCTTCGATTCTCGTAAGAGGCT-CCATGCTTTTCGAGATTGGGAGCTAA
* *
256 G-ACACATT-CCTTCATAAGGATACGTGACATTGATGC-TTGG-GTCAC-AGAAAATGTTTTCTT
258 GAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT
* * * * **
316 TCCACTGTTTTCGATCGAAGTAAAGTTTGTCTCTTAAATAAGACATACAAGAATACATCATGCTA
323 TCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAAT-TGTCATGCTA
* * * * * * * *
381 CTCCTCATTAATTTTCCTGGTT-GGCCACCATAAAACTTTCTCTTCTCATAAGCATACACGA-TA
387 ATCCCCATT-CTTTTCATGATTAGG-CACCAT-AAACTTTGTCTTCTCATAAGTATACATGATTA
* * *
444 TTGATTCTTTCGTTTCGTTAGAAAAGGCTT
449 TTGATGCTTTGGTTTCGTAAG-AAAGGCTT
* * *
474 TCTTGTCACTAATTTTTGTAAAGTCT-AGTTTGTGCCTC-AATGAGATAAAC---GATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * * *
534 ATGATCTTCATTCTTTTTGTGATTAGGCAATATAAACACGTTCACCTCATTAGGAT-AATGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* * * * *
598 TCACGA-TTTCTTTTGCTTGGAAATCTTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCAACC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
* * * * * * *
662 CATAGTTATGCCGAGCATCGATTCTCGTAAGAGTCTCCATTCTATTCGAGATT-GGAGCTAAGAA
196 CATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
* * * * *
726 CACATTCCCCATCATTAGAATACATGATATTGATGCTTTGGTGTCGCGAGAAAATGTTTTCTTTC
261 CACATT-CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
* *
791 CACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAAAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * *
856 CCCATTCTTTTCAAGATTAGGCACCATAAACTTTGTCATCTAATAAGTATACATGATTATTGATG
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATG
*
921 CTTTGGTTTCGTAAGGAAGGCTT
455 CTTTGGTTTCGTAAGAAAGGCTT
*
944 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* *
1009 ATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATTA
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGA-TA
* *
1074 TTCAACGA-TTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAATATCAAAATTCAT
130 TTC-ACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCAT
** * * *
1138 CCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAGATTGGGAGCTAAG
194 CCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAG
*
1203 AACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCGAG-AAATGTTTTCTTT
259 AACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTT
*
1267 CCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT
324 CCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT
* *
1332 -CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTAATAAGTATACACGATTATTGAT
389 CCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGAT
*
1396 GCTTTGGTTTTGTAAGAAAGGCTT
454 GCTTTGGTTTCGTAAGAAAGGCTT
* * *
1420 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGAAAAACAAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
1485 ATGATCTTCATTCTTTTTGTGATTAGGCCACTATAAACACATTCTCCTCATTAGGATAAAAGATA
66 ATGATCTTCATTCTTTTTGTGATTAGG-CACTATAAACACATTCTCCTCATTAGGATAAACGATA
*
1550 TTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCAAC
130 TTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATC
** * * *
1615 AAATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAGATTGGGAGCTAAGA
195 CCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
*
1680 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAATGTTTTC-TTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
1744 CTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT
325 C-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT
* *
1809 CCCCATTCTTTTCATGATTAGGCACCATAAAGTTTGTCTTCTAATAAGTATACATGATTATTGAT
389 CCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGAT
1874 GCTTTGGTTTCGTAAGAAAGGCTT
454 GCTTTGGTTTCGTAAGAAAGGCTT
* * * *
1898 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATGAAATGAGAAAAACAAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
1963 ATGATCTTCATTCTTTTTGTGAATAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
2028 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATC-AAATTCAACA
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
* * * *
2092 AATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAGATTGGGAGCTAAGAA
196 CATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
*
2157 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAATGTTTTC-TTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
* *
2221 TACCGTTTTTGATAGAAGTAAAGTTTGTCTTTTAAATAAGACAAACAAAAATTGTCATGCTAATC
326 -ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * *
2286 CCCATTCTTTTCAAGATTAGGCACCATAAACTTTGTCATCTAATAAGTATACATGATTATTGATG
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATG
*
2351 CTTTGGTTTCGTAAGGAAGGCTT
455 CTTTGGTTTCGTAAGAAAGGCTT
*
2374 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* *
2439 ATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
2504 TCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAATATC-AAATTCATCC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
** * * *
2568 TGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAGATTGGGAGCTAAGAA
196 CATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
*
2633 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAATGTTTTCTTTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
*
2698 ACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C
326 ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
* *
2762 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTAATAAGTATACACGATTATTGATGC
391 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATGC
*
2827 TTTGGTTTTGTAAGAAAGGCTT
456 TTTGGTTTCGTAAGAAAGGCTT
* * *
2849 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGAAAAACAAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
2914 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
2979 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCAACA
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
* * * *
3044 AATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAGATTGGGAGCTAAGAA
196 CATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
*
3109 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAATGTTTTC-TTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
3173 TACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
326 -ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* *
3238 CCCATTCTTTTCATGATTAGGCACCATAAAGTTTGTCTTCTAATAAGTATACATGATTATTGATG
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATG
3303 CTTTGGTTTCGTAAGAAAGGCTT
455 CTTTGGTTTCGTAAGAAAGGCTT
* * *
3326 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAATGAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
3391 ATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
3456 TCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAATATCAAAATTCATCC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
** * * *
3521 TGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAGATTGGGAGCTAAGAA
196 CATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
3586 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
* *
3651 GCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
326 ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
*
3716 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGGTTATTGATGC
391 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATGC
3781 TTTGGTTTCGTAAGAAAGGCTT
456 TTTGGTTTCGTAAGAAAGGCTT
* * * *
3803 TCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCTC-AATGAGGCAAACGAGGATTCTAGTC
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * *
3867 ATGATCTTCATTCTTTTTGTGATTAGGGACTAT-AACACATTCTCCTCATTAGGATAAATGAGAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
3931 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTCATTTTCCTTAATATTAAAATTCATC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCT-ATTTTCCTTAATATCAAAATTCATC
* *
3995 CCATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGCTTTTCGAGATTGGGAGCTAAGA
195 CCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
*
4060 ACACATTCCCTTCATAAGGCTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
4125 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * * * * * *
4190 CCCATTCCTTTCATGATTAGGCACTATAAACTTTGTCTCCTCATAGGGATACACGA-TATTGATT
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATG
4254 CTTTGGTTTCGTAAGAAAGGCTT
455 CTTTGGTTTCGTAAGAAAGGCTT
* * ** * * *
4277 TCTTGTCCCCAATTTTTGTAAAGTCTATGTTTATACCGCAAATGAGACAAACGAGGATTCTAGTC
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * * * * ** *
4342 ATGATGTTCATTCTTTTTGTAATTATGG-GCTATAACCACAATCTTGTCATTAGGATAAATGATA
66 ATGATCTTCATTCTTTTTGTGATTA-GGCACTATAAACACATTCTCCTCATTAGGATAAACGATA
* * * *
4406 TTCAAGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATC
130 TTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATC
* *
4471 CCATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGAGATTGGGAGCTAAGA
195 CCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
4536 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
* * * *
4601 CCCCGTTTTTTATAGAAGTAAAGTTTGTCTCATAAATAAGATAAACAAGAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * *
4666 CCCATTCTTTTCATTACTAGGCACCATAAACTTTGTCTTCTCATAAGTATACAGGATTATTGATG
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATG
4731 CTTTGGTTTCGTAAGAAAGGCTT
455 CTTTGGTTTCGTAAGAAAGGCTT
* * *
4754 TCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAATGAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
4819 ATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
4884 TCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAATATCAAAATTCATCC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
** * * *
4949 TGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAGATTGGGAGCTAAGAA
196 CATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
5014 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
* *
5079 GCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
326 ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
*
5144 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGGTTATTGATGC
391 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATGC
5209 TTTGGTTTCGTAAGAAAGGCTT
456 TTTGGTTTCGTAAGAAAGGCTT
* * * *
5231 TCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCTC-AATGAGGCAAACGAGGATTCTAGTC
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * *
5295 ATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGAGAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* * *
5360 TCATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTCATTTTCCTTAATATTAAAATTCATC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCT-ATTTTCCTTAATATCAAAATTCATC
* *
5424 CCATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGCTTTTCGAGATTGGGAGCTAAGA
195 CCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
*
5489 ACACATTCCCTTCATAAGGCTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
5554 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * * * * * *
5619 CCCATTCCTTTCATGATTAGGCACTATAAACTTTGTCTCCTCATAGGGATACACGA-TATTGATT
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATG
5683 CTTTGGTTTCGTAAGAAAGGCTT
455 CTTTGGTTTCGTAAGAAAGGCTT
* * ** * * *
5706 TCTTGTCCCCAATTTTTGTAAAGTCTATGTTTATACCGCAAATGAGACAAACGAGGATTCTAGTC
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * * * * ** *
5771 ATGATGTTCATTCTTTTTGTAATTATGG-GCTATAACCACAATCTTGTCATTAGGATAAATGATA
66 ATGATCTTCATTCTTTTTGTGATTA-GGCACTATAAACACATTCTCCTCATTAGGATAAACGATA
* * * *
5835 TTCAAGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATC
130 TTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATC
* *
5900 CCATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGAGATTGGGAGCTAAGA
195 CCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
5965 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
* * * *
6030 CCCCGTTTTTTATAGAAGTAAAGTTTGTCTCATAAATAAGATAAACAAGAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * *
6095 CCCATTCTTTTCATTACTAGGCACCATAAACTTTGTCTTCTCATAAGTATACAGGATTATTGATG
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATG
6160 CTTTGGTTTCGTAAGAAAGGCTT
455 CTTTGGTTTCGTAAGAAAGGCTT
* * *
6183 TCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAATGAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
6248 ATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
6313 TCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAATATCAAAATTCATCC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
** * * *
6378 TGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAGATTGGGAGCTAAGAA
196 CATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
6443 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
* *
6508 GCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
326 ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
*
6573 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGGTTATTGATGC
391 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATGC
6638 TTTGGTTTCGTAAGAAAGGCTT
456 TTTGGTTTCGTAAGAAAGGCTT
* * * *
6660 TCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCTC-AATGAGGCAAACGAGGATTCTAGTC
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * *
6724 ATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGAGAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
6789 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTCATTTTCCTTAATATTAAAATTCATC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCT-ATTTTCCTTAATATCAAAATTCATC
* *
6853 CCATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGCTTTTCGAGATTGGGAGCTAAGA
195 CCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
*
6918 ACACATTCCCTTCATAAGGCTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
6983 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * * * * * *
7048 CCCATTCCTTTCATGATTAGGCACTATAAACTTTGTCTCCTCATAGGGATACACGA-TATTGATT
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATG
7112 CTTTGGTTTCGTAAGAAAGGCTT
455 CTTTGGTTTCGTAAGAAAGGCTT
* ** * *
7135 TCTTGTCCCCAATTTTTGTAAAGTCTAAGTTTATACCGCAAATGAGACAAACGAGGATTCTAG
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAG
7198 GATAAACGAT
Statistics
Matches: 6215, Mismatches: 462, Indels: 91
0.92 0.07 0.01
Matches are distributed among these distances:
467 10 0.00
468 39 0.01
469 77 0.01
470 137 0.02
471 60 0.01
472 41 0.01
473 90 0.01
474 63 0.01
475 825 0.13
476 2685 0.43
477 1857 0.30
478 314 0.05
479 17 0.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (477 bp):
TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
CATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGATTATTGATGC
TTTGGTTTCGTAAGAAAGGCTT
Found at i:5351 original size:953 final size:952
Alignment explanation
Indices: 1--7197 Score: 11198
Period size: 953 Copynumber: 7.6 Consensus size: 952
* *
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGAAAAACGGAGG--TCTAGT
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC-GAGGATTCTAGT
64 AATGATCTTCATTC-TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATA
65 AATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATA
*
128 TTCACGATTTTCTTTTGCATGGAAATC-TTTCTTTACGCTATTTTCCTTAATATC-AAATTCAAC
130 TTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATC
* * * * *
191 AAATAATTATGCCAAAGCTTTGATTCTCGTAAGAGACTCCCATGCTTTTCAAGATTGGGAGCTAA
195 CAATAATTATGAC-AAGCTTCGATTCTCGTAAGAGGCT-CCATGCTTTTCGAGATTGGGAGCTAA
* *
256 G-ACACATT-CCTTCATAAGGATACGTGACATTGATGC-TTGG-GTCAC-AGAAAATGTTTTCTT
258 GAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT
* * * * **
316 TCCACTGTTTTCGATCGAAGTAAAGTTTGTCTCTTAAATAAGACATACAAGAATACATCATGCTA
323 TCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAAT-TGTCATGCTA
* * * * * * * * *
381 CTCCTCATTAATTTTCCTGGTT-GGCCACCATAAAACTTTCTCTTCTCATAAGCATACACGATAT
387 ATCCCCATT-CTTTTCATGATTAGG-CACCAT-AAACTTTGTCTTCTCATAAGTATACAGGTTAT
* * * * *
445 TGATTCTTTCGTTTCGTTAGAAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCT-AGTTTGTGC
449 TGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* *
509 CTC-AATGAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCAATATAAA
513 CTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAA
* * * * *
570 CACGTTCACCTCATTAGGAT-AATGATATTCACGA-TTTCTTTTGCTTGGAAATCTTTTCTTTTC
578 CACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
* * * * * * * *
633 CCTTTTTTCCTTAATATCAAAATTCAACCCATAGTTATGCCGAGCATCGATTCTCGTAAGAGTCT
643 GCTATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCT
* * * * *
698 CCATTCTATTCGAGATT-GGAGCTAAGAACACATTCCCCATCATTAGAATACATGATATTGATGC
708 CCATGCT-TTCGAGATTGGGAGCTAAGAACACATT-CCCTTCATAAGGATACATGACATTGATGC
* *
762 TTTGGTGTCGCGAGAAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAA
771 TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAA
* *
827 TAAGACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTTGT
836 TAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGT
* * * *
892 CATCTAATAAGTATACATGATTATTGATGCTTTGGTTTCGTAAGGAAGGCTT
901 CTTCTCATAAGTATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
*
944 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* *
1009 ATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATTA
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGA-TA
* *
1074 TTCAACGA-TTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAATATCAAAATTCAT
130 TTC-ACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCAT
** * * *
1138 CCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAGATTGGGAGCTAAG
194 CCAATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAG
*
1203 AACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCGAG-AAATGTTTTCTTT
259 AACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTT
*
1267 CCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT
324 CCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT
* *
1332 -CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTAATAAGTATACACGATTATTGAT
389 CCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACA-GGTTATTGAT
* *
1396 GCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAA
453 GCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* *
1461 ATGAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCCACTATAAACACA
518 ATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG-CACTATAAACACA
*
1526 TTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTA
582 TTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTA
* ** *
1591 TTTTCCTTAATATCAAAATTCAACAAATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCAT
647 TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCAT
* *
1656 TCTTTTCAAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
712 GC-TTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGG
*
1721 TGTCACAAGAAAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAG
776 TGTCGCAAGAAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAG
*
1785 ACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAGTTTGTCTTC
840 ACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTC
* *
1850 TAATAAGTATACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
905 TCATAAGTATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
* * * *
1898 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATGAAATGAGAAAAACAAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
1963 ATGATCTTCATTCTTTTTGTGAATAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
2028 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATC-AAATTCAACA
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
* * *
2092 AATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAGATTGGGAGCTAAGAA
196 AATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
*
2157 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAATGTTTTC-TTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
* *
2221 TACCGTTTTTGATAGAAGTAAAGTTTGTCTTTTAAATAAGACAAACAAAAATTGTCATGCTAATC
326 -ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * * *
2286 CCCATTCTTTTCAAGATTAGGCACCATAAACTTTGTCATCTAATAAGTATACATGATTATTGATG
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACA-GGTTATTGATG
*
2351 CTTTGGTTTCGTAAGGAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
454 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* *
2416 TGAGACAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
519 TGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
* * *
2481 CTCCTTATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGT
584 CTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATT
** * *
2546 TTCCTTAATATC-AAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGC
649 TTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATG-
2610 CTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
713 CTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
* *
2675 TCGCGAGAAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
778 TCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
*
2740 AACAAGAATTGTCATGCTAAT-CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTAA
843 AACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCA
* *
2804 TAAGTATACACGATTATTGATGCTTTGGTTTTGTAAGAAAGGCTT
908 TAAGTATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
* * *
2849 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGAAAAACAAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
2914 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
2979 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCAACA
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
* * *
3044 AATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAGATTGGGAGCTAAGAA
196 AATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
*
3109 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAATGTTTTC-TTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
3173 TACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
326 -ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * *
3238 CCCATTCTTTTCATGATTAGGCACCATAAAGTTTGTCTTCTAATAAGTATACATGATTATTGATG
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACA-GGTTATTGATG
*
3303 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
454 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
3368 TGAGTCAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
519 TGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
* *
3433 CTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGT
584 CTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATT
** * *
3498 TTCCTTAATATCAAAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGC
649 TTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATG-
3563 CTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
713 CTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
* *
3628 TCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
778 TCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
3693 AACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCA
843 AACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCA
3758 TAAGTATACATGG-TTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
908 TAAGTATACA-GGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
* * * *
3803 TCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCTC-AATGAGGCAAACGAGGATTCTAGTC
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * *
3867 ATGATCTTCATTCTTTTTGTGATTAGGGACTAT-AACACATTCTCCTCATTAGGATAAATGAGAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
3931 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTCATTTTCCTTAATATTAAAATTCATC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCT-ATTTTCCTTAATATCAAAATTCATC
* * *
3995 CCATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGCTTTTCGAGATTGGGAGCTAAGA
195 CAATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
*
4060 ACACATTCCCTTCATAAGGCTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
4125 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * * * * * * *
4190 CCCATTCCTTTCATGATTAGGCACTATAAACTTTGTCTCCTCATAGGGATACACGATATTGATTC
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACAGGTTATTGATGC
* * ** * *
4255 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTCTATGTTTATACCGCAAAT
455 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * *
4320 GAGACAAACGAGGATTCTAGTCATGATGTTCATTCTTTTTGTAATTATGG-GCTATAACCACAAT
520 GAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-GGCACTATAAACACATT
** * * * * *
4384 CTTGTCATTAGGATAAATGATATTCAAGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATT
584 CTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATT
*
4449 TTCCTTAATATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGC
649 TTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGC
4514 TTTACGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
714 TTT-CGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
* * * *
4579 TCGCAAGAAAATGTTTTCTTTCCCCCGTTTTTTATAGAAGTAAAGTTTGTCTCATAAATAAGATA
778 TCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
* *
4644 AACAAGAATTGTCATGCTAATCCCCATTCTTTTCATTACTAGGCACCATAAACTTTGTCTTCTCA
843 AACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCA
4709 TAAGTATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
908 TAAGTATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
* * *
4754 TCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAATGAGGATTCTAGTA
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
*
4819 ATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
4884 TCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAATATCAAAATTCATCC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
** * * *
4949 TGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAGATTGGGAGCTAAGAA
196 AATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
5014 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
261 CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
* *
5079 GCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
326 ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
5144 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACATGGTTATTGATGC
391 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACA-GGTTATTGATGC
* *
5209 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCTC-AAT
455 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
5273 GAGGCAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTC
520 GAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTC
* * * *
5338 TCCTCATTAGGATAAATGAGATTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTCATT
585 TCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCT-ATT
* * *
5402 TTCCTTAATATTAAAATTCATCCCATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGC
649 TTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGC
*
5467 TTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGCTACATGACATTGATGCTTTGGTG
714 -TTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
5532 TCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
778 TCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
* * *
5597 AACAAGAATTGTCATGCTAATCCCCATTCCTTTCATGATTAGGCACTATAAACTTTGTCTCCTCA
843 AACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCA
* * * *
5662 TAGGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTT
908 TAAGTATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
* * ** * * *
5706 TCTTGTCCCCAATTTTTGTAAAGTCTATGTTTATACCGCAAATGAGACAAACGAGGATTCTAGTC
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * * * * ** *
5771 ATGATGTTCATTCTTTTTGTAATTATGG-GCTATAACCACAATCTTGTCATTAGGATAAATGATA
66 ATGATCTTCATTCTTTTTGTGATTA-GGCACTATAAACACATTCTCCTCATTAGGATAAACGATA
* * * *
5835 TTCAAGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATC
130 TTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATC
* * *
5900 CCATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGAGATTGGGAGCTAAGA
195 CAATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
5965 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
* * * *
6030 CCCCGTTTTTTATAGAAGTAAAGTTTGTCTCATAAATAAGATAAACAAGAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* *
6095 CCCATTCTTTTCATTACTAGGCACCATAAACTTTGTCTTCTCATAAGTATACAGGATTATTGATG
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACAGG-TTATTGATG
*
6160 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
454 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
6225 TGAGTCAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
519 TGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
* *
6290 CTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGT
584 CTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATT
** * *
6355 TTCCTTAATATCAAAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGC
649 TTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATG-
6420 CTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
713 CTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG
* *
6485 TCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
778 TCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACA
6550 AACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCA
843 AACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCA
6615 TAAGTATACATGG-TTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
908 TAAGTATACA-GGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
* * * *
6660 TCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCTC-AATGAGGCAAACGAGGATTCTAGTC
1 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* * *
6724 ATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGAGAT
66 ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
* *
6789 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTCATTTTCCTTAATATTAAAATTCATC
131 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCT-ATTTTCCTTAATATCAAAATTCATC
* * *
6853 CCATAATTATGACAAGTTTCGATTCTCGTAAGAGGCTCCACGCTTTTCGAGATTGGGAGCTAAGA
195 CAATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA
*
6918 ACACATTCCCTTCATAAGGCTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
260 ACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTC
6983 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
325 CACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATC
* * * * * * * *
7048 CCCATTCCTTTCATGATTAGGCACTATAAACTTTGTCTCCTCATAGGGATACACGATATTGATTC
390 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACAGGTTATTGATGC
* ** * *
7113 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTCTAAGTTTATACCGCAAAT
455 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
7178 GAGACAAACGAGGATTCTAG
520 GAGACAAACGAGGATTCTAG
7198 GATAAACGAT
Statistics
Matches: 5805, Mismatches: 393, Indels: 103
0.92 0.06 0.02
Matches are distributed among these distances:
942 4 0.00
943 49 0.01
944 19 0.00
945 47 0.01
946 105 0.02
947 102 0.02
948 61 0.01
949 13 0.00
950 73 0.01
951 808 0.14
952 1759 0.30
953 1914 0.33
954 832 0.14
955 19 0.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (952 bp):
TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
ATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATAT
TCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAATATCAAAATTCATCC
AATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAA
CACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC
CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACAGGTTATTGATGCT
TTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
AGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
CCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTT
CCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTT
TCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCG
CAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAC
AAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAA
GTATACAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTT
Found at i:8089 original size:477 final size:477
Alignment explanation
Indices: 7195--47234 Score: 63381
Period size: 477 Copynumber: 84.1 Consensus size: 477
7185 ACGAGGATTC
* *
7195 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
7260 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
7325 ATTCGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGGCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * *
7390 AAATGTTTTCTTTCCGCCGTTTTTTATAGATGTAAAGTTTCTCTATTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
7455 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
7520 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTATTGTCACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
7585 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTATTAATCTTCATTCTTTTTGCGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
7650 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * *
7672 TAGGATAAACGATATTCATGATTTTCTTTTGCACGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
7737 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGACGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
7802 ATTCGGAGCTAAGAACATATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
7867 AAATGTTTTCTTTCCGCCATTTTTTATAGAAGTAAAGTTTCTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
7932 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
7997 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
*
8062 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* *
8127 ACTATAAACACACTCTCCTTAT
456 ACTATAAACACATTCTCCTCAT
* * * **
8149 TAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCCTTTCTTGATGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
8214 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGCTTCTCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
8279 ATTCGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * * *
8344 AAATGTTTTCTTTTCGCCGTTTTTTATAGAAGTAAAGTTTCTCCCTTAAATAAAACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
8409 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGGACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
8474 CACGA-TATTGATTCTTTCGTTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* *
8538 GTTTGTGCCTCAAATGAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* * *
8600 AATATAAACACGTTCACCTCAT
456 ACTATAAACACATTCTCCTCAT
* * *
8622 TAGGATAAACGATATTCACGATTTTCTTTTGCTTGGAAATCTTTTCCTTT-CCCTTTTTTTGCTT
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTT-CTTTACCC-TATTTTCCTT
* * * * *
8686 AATATCAAAATTCAACCCATAGTTATGACAAGCATCGATTCTCGTAAGAGTCTCCATTCTTTTCG
64 AATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCG
* * * *
8751 AGATT-GGAGCTAAGAACACATTCCCTTCATTAGAATACATGATATTGATGCTTTGGTGTCGCGA
129 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
*
8815 GAAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
194 GAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
*
8880 AATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTA
259 AATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTA
8945 TACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
324 TACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
* *
9010 AAGTTCGTGTCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAG
389 AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAG
9075 GCACTATAAACACATTCTCCTCAT
454 GCACTATAAACACATTCTCCTCAT
*
9099 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
9164 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
9229 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
9294 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
9358 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
** * * *
9423 ACTTGATTATTGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * * *
9488 AGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATTTTCATTCTTTTTTTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
9553 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
9576 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
9641 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
9706 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
9771 AAATGTTTTC-TTCCTGCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
9835 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
9900 ACACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTATAGTCAA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
9965 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
10030 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
10053 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * * *
10118 TATCAAAATTCAACCCATAAATATGAAAAGCATT-AATTC-CTGTAAGAGGCTCCATTCTTTTCA
66 TATCAAAATTCATCCCATAATTATGACAAGC-TTCGATTCTC-GTAAGAGGCTCCATGCTTTTCG
*
10181 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAA
129 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
10246 GAAAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
194 GAAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
* * *
10310 GAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACATTGTCTTCTCATAAGG
258 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGT
* * **
10375 ATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCGTTTTTTGTAAAGTC
323 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
** ** * *
10439 TAAGTTTATGCGGCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTAATTA
388 TAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
* **
10504 CGG-GCTATAAACACATTCTTGTCAT
453 -GGCACTATAAACACATTCTCCTCAT
* * *
10529 TAGGATAAATGATATTCACGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
10594 TATCAAAATTCATCCCATAATTATAACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * * *
10659 ATTGGGAGCTAAGAACATATTCCCTTCATCAGGATACATGACATTGATGCTCTGGTTTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
10724 AAATGTTTTCTTTCC-CCAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCCACC-GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
10788 ATTGTCCTGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* *
10853 ACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
10918 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
10983 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
11006 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
11071 TATCAAAATTCAACCCATAAATATGAAAAGCATT-GATTC-CTGTAAGAGGCTCCATTCTTTTCA
66 TATCAAAATTCATCCCATAATTATGACAAGC-TTCGATTCTC-GTAAGAGGCTCCATGCTTTTCG
*
11134 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAA
129 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
11199 GAAAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
194 GAAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
* * *
11263 GAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACATTGTCTTCTCATAAGG
258 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGT
* * **
11328 ATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCGTTTTTTGTAAAGTC
323 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
** ** * * *
11392 TAAGTTTATGCGGCAAATGAGACAAACGAGGATTGTAGTCATGATCTTCATTCTTTTTGTAATTA
388 TAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
* **
11457 CGG-GCTATAAACACATTCTTGTCAT
453 -GGCACTATAAACACATTCTCCTCAT
* * *
11482 TAGGATAAATGATATTCACGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
11547 TATCAAAATTCATCCCATAATTATAACATGCTTCGATTCTCGTAATAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
11612 ATTGGGAGCTAAGAACATATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTTTCGCAGGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
11677 AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTCTCTCTTAAATAAAACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
11742 TTGTCATGCTAATCCCCATTCTTTTCATAATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
11807 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTATTGTCACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* *
11872 GTTCGTGCCTTAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGCGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
11937 ACTATAAACACATTCTCCTTAT
456 ACTATAAACACATTCTCCTCAT
* * *
11959 TAGGATAAACGATATTCACGATTTTCTTTTGCACGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
12024 TATCAAAATTCATCCCACAATTATGACAAGCTTCAATTCTCGTAAGAGACTCCATGCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
12089 ATTGGGAGCTAAGAAAACATTCCCTTCATAAGGATACGTGACATTGATGCTTTGGTGTTAG-AAG
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG-TCGCAAG
* *
12153 AAAATGTTTTCTTTCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAGACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
** * * * * * * *
12218 ATCATCATGCTACTCCCAATTCGTTTCCTGATTAGGCACCATAAACTTTCTCTTTTCATAAGGAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* ** * * *
12283 ACACGA-TATTGATTCTTTCATTTCGTTAGAAAGGCTTTCTTGTTACTAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * *
12347 AGTTTGTGCCTCAAATGAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGGGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
* * *
12409 CAATATAAACACGTTCACCTCAT
455 CACTATAAACACATTCTCCTCAT
* * * * *
12432 TAGGATAAACGATATTCACGATTTTCTTTTCCTTGGAAATCTTTTCTTTTCCCTTTTTTTGCTTA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCC-TATTTTCCTTA
* * * * *
12497 ATATCAAAATTCAACCCATAGTTATGACAAGCATCGATTCTCGTAAGAGTCTCCATTCTTTTCGA
65 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
* * * *
12562 GATT-GGAGCTAAGAACACATTCCCTTCATTAGAATACATGATATTGATGCTTTGGTGTCGCGAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* *
12626 AAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTCTCTCTTAAATAAGACAAACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
12691 ATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
12756 ACATGATTATTGAAGCTTTGGTTTCGTAAGAAATGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
12821 AGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTATTGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
12886 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* *
12909 TAGGATAAACGATATTCACGATTCTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
12974 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
13039 ATTGGGAGCTAAGGACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
13104 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
13168 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
** * *
13233 ACTTGATTATTGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
13298 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATTTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
13363 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
13386 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
13451 TATTAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
13516 ATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
13581 AAATGTTTTC-TTCCTACCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* * **
13645 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTACTCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* *
13710 ACACTG-TTATTGATGCTTTGGTTTCGTAAGAAAGGATTTCTTGTCACCAATTTTTGTATAGTCT
325 ACAC-GATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
13774 AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAC
389 AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-
* * **
13839 GG-GCTATAAACACAATCTTGTCAT
453 GGCACTATAAACACATTCTCCTCAT
* * *
13863 TAGGATAAATGATATTCACGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* *
13928 TATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
13993 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
14058 AAATGTTTTCTTTCCCCCGTTTTTTATAGAAGCAAAGTTTGTCTCTTAAAGAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
14123 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
14188 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCAAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * * * *
14253 CTTCGTGCCTCAAATGAGGCAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTTGGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
14318 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * * *
14340 TAAGATAAATGAGATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * * *
14405 TATTAAAATTCATCCCATAATTATGACAAACTTTGATTCTCATAA-AGGCTCCACGCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
14469 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACACTGATGCTTTGGTGT-ACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
14533 AAATGTTTTATTTCCACAGTTTTTGATAGATGTAAAGTTTGTCTCTTAAATAAGACACACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
14598 TTGTCATTCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
14663 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
14728 CTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
14793 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * * *
14815 TATGATAAACGATATTCACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCGATTTTCTTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
14880 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACATAAGAGGCACCATGCTTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
14945 ATTGGGAGCTAAGAACTCATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
15010 AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTCTCTCTTAAATAAAACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
15075 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
15140 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
*
15205 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* *
15270 ACTATAAACACACTCTCCTTAT
456 ACTATAAACACATTCTCCTCAT
* * * **
15292 TAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCCTTTCTTGATGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
15357 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGCTTCTCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
15422 ATTCGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * * *
15487 AAATGTTTTCTTTTCGCCGTTTTTTATAGAAGTAAAGTTTCTCCCTTAAATAAAACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
15552 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGGACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * **
15617 CACGA-TATTGATTCTTTCGTTTCGTTAGAAAGGCTTTCTTGTCATTAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
15681 GTTTGTGCCTCAAATGAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGAGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* * *
15743 AATATAAACACGTTCACCTCAT
456 ACTATAAACACATTCTCCTCAT
* * *
15765 TAGGATAAACGATATTCACGATTTTCTTTTGCTTGGAAATCTTTTCCTTT-CCCTTTTTTTGCTT
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTT-CTTTACCC-TATTTTCCTT
* * * * *
15829 AATATCAAAATTCAACCCATAGTTATGACAAGCATCGATTCTCGTAAGAGTCTCCATTCTTTTCG
64 AATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCG
* * * *
15894 AGATT-GGAGCTAAGAACACATTCCCTTCATTAGAATACATGATATTGATGCTTTGGTGTCGCGA
129 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
*
15958 GAAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
194 GAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
*
16023 AATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTA
259 AATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTA
16088 TACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
324 TACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
* *
16153 AAGTTCGTGTCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAG
389 AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAG
16218 GCACTATAAACACATTCTCCTCAT
454 GCACTATAAACACATTCTCCTCAT
*
16242 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
16307 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
16372 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
16437 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
16501 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
** * * *
16566 ACTTGATTATTGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * * *
16631 AGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATTTTCATTCTTTTTTTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
16696 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
16719 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
16784 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
16849 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
16914 AAATGTTTTC-TTCCTGCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* * *
16978 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCCCCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
17043 ACACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTATAGTCAA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
17108 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
17173 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
17196 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * * *
17261 TATCAAAATTCAACCCATAAATATGAAAAGCATT-AATTC-CTGTAAGAGGCTCCATTCTTTTCA
66 TATCAAAATTCATCCCATAATTATGACAAGC-TTCGATTCTC-GTAAGAGGCTCCATGCTTTTCG
*
17324 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAA
129 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
17389 GAAAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
194 GAAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
* * *
17453 GAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACATTGTCTTCTCATAAGG
258 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGT
* * **
17518 ATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCGTTTTTTGTAAAGTC
323 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
** ** * *
17582 TAAGTTTATGCGGCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTAATTA
388 TAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
* **
17647 CGG-GCTATAAACACATTCTTGTCAT
453 -GGCACTATAAACACATTCTCCTCAT
* * *
17672 TAGGATAAATGATATTCACGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
17737 TATCAAAATTCATCCCATAATTATAACATGCTTCGATTCTCGCAAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
17802 ATTGGGAGCTAAGAACATATTCCCTTCATAAGGATACATGACATTGATGCTCTGGTTTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
17867 AAATGTTTTCTTTCC-CCAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCCACC-GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
17931 ATTGTCCTGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* *
17996 ACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
18061 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
18126 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
18149 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
18214 TATCAAAATTCAACCCATAAATATGAAAAGCATT-GATTC-CTGTAAGAGGCTCCATTCTTTTCA
66 TATCAAAATTCATCCCATAATTATGACAAGC-TTCGATTCTC-GTAAGAGGCTCCATGCTTTTCG
*
18277 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAA
129 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
18342 GAAAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
194 GAAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
* * *
18406 GAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACATTGTCTTCTCATAAGG
258 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGT
* * **
18471 ATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCGTTTTTTGTAAAGTC
323 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
** ** * *
18535 TAAGTTTATGCGGCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTAATTA
388 TAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
* **
18600 CGG-GCTATAAACACATTCTTGTCAT
453 -GGCACTATAAACACATTCTCCTCAT
* * *
18625 TAGGATAAATGATATTCACGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
18690 TATCAAAATTCATCCCATAATTATAACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
18755 ATTGGGAGCTAAGAACATATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTTTCGCAGGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
18820 AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTCTCTCTTAAATAAAACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
18885 TTGTCATGCTAATCCCCATTCTTTTCATAATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
18950 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTATTGTCACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* *
19015 GTTCGTGCCTTAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGCGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
19080 ACTATAAACACATTCTCCTTAT
456 ACTATAAACACATTCTCCTCAT
* * *
19102 TAGGATAAACGATATTCACGATTTTCTTTTGCACGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
19167 TATCAAAATTCATCCCACAATTATGACAAGCTTCAATTCTCGTAAGAGACTCCATGCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
19232 ATTGGGAGCTAAGAAAACATTCCCTTCATAAGGATACGTGACATTGATGCTTTGGTGTTAG-AAG
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG-TCGCAAG
* *
19296 AAAATGTTTTCTTTCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAGACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
** * * * * * *
19361 ATCATCATGCTACTCCCAATTCGTTTCCTGATTAGGCACCATAAACTTTCTCTTCTCATAAGGAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* ** * * *
19426 ACACGA-TATTGATTCTTTCATTTCGTTAGAAAGGCTTTCTTGTTACTAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * *
19490 AGTTTGTGCCTCAAATGAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGGGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
* * *
19552 CAATATAAACACGTTCACCTCAT
455 CACTATAAACACATTCTCCTCAT
* * * * *
19575 TAGGATAAACGATATTCACGATTTTCTTTTCCTTGGAAATCTTTTCTTTTCCCTTTTTTTGCTTA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCC-TATTTTCCTTA
* * * * *
19640 ATATCAAAATTCAACCCATAGTTATGACAAGCATCGATTCTCGTAAGAGTCTCCATTCTTTTCGA
65 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
* * * *
19705 GATT-GGAGCTAAGAACACATTCCCTTCATTAGAATACATGATATTGATGCTTTGGTGTCGCGAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* *
19769 AAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTCTCTCTTAAATAAGACAAACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
19834 ATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
19899 ACACGATTATTGAAGCTTTAGTTTCGTAAGAAATGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
19964 AGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTATTGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
20029 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* *
20052 TAGGATAAACGATATTCACGATTCTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
20117 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
20182 ATTGGGAGCTAAGGACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
20247 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
20311 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
** * *
20376 ACTTGATTATTGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
20441 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATTTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
20506 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
20529 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * * *
20594 TATTAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAT
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
20659 ATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
20724 AAATGTTTTC-TTCCTACCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* * **
20788 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTACTCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* *
20853 ACACTG-TTATTGATGCTTTGGTTTCGTAAGAAAGGATTTCTTGTCACCAATTTTTGTATAGTCT
325 ACAC-GATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
20917 AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAC
389 AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-
* * **
20982 GG-GCTATAAACACAATCTTGTCAT
453 GGCACTATAAACACATTCTCCTCAT
* * *
21006 TAGGATAAATGATATTCACGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* *
21071 TATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
21136 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * *
21201 AAATGTTTTCTTTCCCCCGTTTTTTATAGAAGCAAAGTTTGTCTCTTAGAGAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
21266 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
21331 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCAAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
21396 CTTCGTGCCTCAAATGAGGA-AAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTTGG
391 GTTCGTGCCTCAAATGA-GACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
*
21460 GACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* * * * *
21483 TAAGATAAATGAGATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * * *
21548 TATTAAAATTCATCCCATAATTATGACAAACTTTGATTCTCAT-AGAGGCTCCACGCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
21612 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACACTGATGCTTTGGTGT-ACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * *
21676 AAATGTTTTCTTTCCACAGTTTTTGATAGATGTAAAGTTTGTCTCTTAAATAAGACACACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
21741 TTGTCATTCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
21806 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * * *
21871 CTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTAATTCTTTTTGTGATTAGGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
21936 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * * *
21958 TATGATAAACGATATTCACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCGATTTTCTTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
22023 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACATAAGAGGCACCATGCTTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
22088 ATTGGGAGCTAAGAACTCATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
22153 AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTCTCTCTTAAATAAAACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
22218 TTGTCATGCTAATCCCCATTCTTTTCATAATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
*
22283 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
22348 CTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
22413 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* ** * * * *
22435 TATGATAAATTATATTCACTATTTTCATTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
22500 TATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTTAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
22565 ATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
22630 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
22695 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAGAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
22760 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* *
22825 GTTCGTGCCTCAAATGAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGGGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* * *
22887 AATATAAACACGTTCACCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * * *
22909 TAGGATAAACGATATTCACGATTTTCTTTTCCTTGGAAATCTTTTCTTTTCCCTTTTTTTGCTTA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCC-TATTTTCCTTA
* * * * *
22974 ATATCAAAATTCAACCCATAGTTATGACAAGCATCGATTCTCGTAAGAGTCTCCATTCTTTTCGA
65 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
* * * *
23039 GATT-GGAGCTAAGAACACATTCCCTTCATTAGAATACATGATATTGATGCTTTGGTGTCGCGAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* *
23103 AAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTCTCTCTTAAATAAGACAAACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
23168 ATTGCCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
*
23233 ACACGATTATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
23298 AGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTATTGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
23363 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* *
23386 TAGGATAAACGATATTCACGATTCTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
23451 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
23516 ATTGGGAGCTAAGGACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
23581 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
23645 ATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
23710 ACATGATTATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * *
23775 AGTTCTTGTCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
*
23840 CACTATAAACACACTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* * *
23863 TAGGATAAACGATATTCACGATTTTGTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
23928 TATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTTAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
23993 ATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
24058 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
24123 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAGAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
24188 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* *
24253 GTTCGTGCCTCAAATGAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGGGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* * *
24315 AATATAAACACGTTCACCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * * *
24337 TAGGATAAACGATATTCACGATTTTCTTTTCCTTGGAAATCTTTTCTTTTCCCTTTTTTTGCTTA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCC-TATTTTCCTTA
* * * * *
24402 ATATCAAAATTCAACCCATAGTTATGACAAGCATCGATTCTCGTAAGAGTCTCCATTCTTTTCGA
65 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
* * * *
24467 GATT-GGAGCTAAGAACACATTCCCTTCATTAGAATACATGATATTGATGCTTTGGTGTCGCGAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* *
24531 AAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTCTCTCTTAAATAAGACAAACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
24596 ATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
*
24661 ACACGATTATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
24726 AGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTATTGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
24791 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* *
24814 TAGGATAAACGATATTCACGATTCTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
24879 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
24944 ATTGGGAGCTAAGGACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
25009 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
25073 ATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
25138 ACATGATTATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * *
25203 AGTTCTTGTCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
*
25268 CACTATAAACACACTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* * *
25291 TAGGATAAACGATATTCACGATTTTGTTTTGCATGGAAATCCTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
25356 TATCAAAATTCATCCCGTAATTTTTACAAGCTTCGATTCTCGTAAGAGGCTCCATTCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
25421 ATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
25486 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGCCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
25551 TTGTCATGCTAATCCCTATTCTTTTCATGATTCGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
25616 CACGGTTATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
25681 GTTCTTGTCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
25746 ACTATAAACACACTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* *
25768 TAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
25833 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATTCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
25898 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
25963 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGCCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
26028 TTGTCATGCTAATCCCTATTCTTTTCATGATTCGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
26093 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTTTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * * *
26158 GTTCATG-CTGCAAATGAGACAAACGAGGATTCTAGTCATGATGTTCATTCTTTTTGTAATTACG
391 GTTCGTGCCT-CAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-G
* * *
26222 G-GCTATAAACACAATCTCGTCAT
454 GCACTATAAACACATTCTCCTCAT
** *
26245 TAGGATAAATTATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCCTATTTTCCCTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
26309 TATCAAAATTCATCCCATAATTTTGACAAGCTTCGATTCTCGTTAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
26374 ATTGGGAGCTAAGAACACATTCCCTTCACAAGGATAGATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
26439 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
26504 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
26569 CATGATTATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
26634 GTTCTTGTCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
26699 ACTATAAACACACTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * *
26721 TAGGATAAACGATATTCACGATTTTGTTTTGCATGGAAATCCTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
26786 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATTCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
26851 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
26916 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGCCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
26981 TTGTCATGCTAATCCCTATTCTTTTCATGATTCGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
27046 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGACACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
27111 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
27176 ACTATAAACACTTTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * *
27198 TAGGATAAACGATATTCACGATTTTCTTTTGCAAGGAAATCTTTTCTTTTCCCTTTTTTCCATAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
27263 TATCAAAATTCATGCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
27328 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGTTGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * *
27393 AAATGTTTTCTTTCCGCCTTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
27458 TTGTCAAGCTAATCCCAATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
27523 CACGGTTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* ** *
27588 GTTCGTGCCGCAAATGAGACAAACGAGGATTCTAGCCATGATGTTCATTCTTTTTGTGATTACGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-GG
* * *
27653 -GCTATAAACACAATCTCGTCAT
455 CACTATAAACACATTCTCCTCAT
** * * *
27675 TAGGATAAATTATATTCACTATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
27740 TATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTTAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
27805 ATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
27870 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
27935 TTGTCATGCTAATCTCCATTCTTTTCATGATTAGGCACCAGAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
28000 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
*
28065 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
28130 ACTATAAACACACTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* *
28152 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
28217 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATTCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
28282 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
28347 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGCCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
28412 TTGTCATGCTAATCCCTATTCTTTTCATGATTCGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
28477 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGACACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
28542 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
28607 ACTATAAACACTTTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * *
28629 TAGGATAAACGATATTCACGATTTTCTTTTGCAAGGAAATCTTTTCTTTTCCCTTTTTTCCATAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
28694 TATCAAAATTCATGCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
28759 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGTTGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * *
28824 AAATGTTTTCTTTCCGCCTTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
28889 TTGTCAAGCTAATCCCAATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
28954 CACGGTTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* ** *
29019 GTTCGTGCCGCAAATGAGACAAACGAGGATTCTAGCCATGATGTTCATTCTTTTTGTGATTACGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-GG
* * *
29084 -GCTATAAACACAATCTCGTCAT
455 CACTATAAACACATTCTCCTCAT
** * * *
29106 TAGGATAAATTATATTCACTATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
29171 TATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTTAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
29236 ATTGGGAGCTAAAAACACATTCACTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
29301 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
29366 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAGAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
29431 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
*
29496 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
29561 ACTATAAACACACTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* *
29583 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
29648 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATTCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
29713 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
29778 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGCCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
29843 TTGTCATGCTAATCCCTATTCTTTTCATGATTCGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
29908 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGACACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
29973 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
30038 ACTATAAACACTTTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * *
30060 TAGGATAAACGATATTCACGATTTTCTTTTGCAAGGAAATCTTTTCTTTTCCCTTTTTTCCATAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
30125 TATCAAAATTCATGCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
30190 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGTTGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
30255 AAATGTTTTCTTTCCGCCTTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAATAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
30320 TTGTCAAGCTAATCCCAATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
30385 CACGGTTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* ** *
30450 GTTCGTGCCGCAAATGAGACAAACGAGGATTCTAGCCATGATGTTCATTCTTTTTGTGATTACGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-GG
* * *
30515 -GCTATAAACACAATCTCGTCAT
455 CACTATAAACACATTCTCCTCAT
** * * *
30537 TAGGATAAATTATATTCACTATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
30602 TATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTTAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
30667 ATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
30732 AAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
30797 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAGAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
30862 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
*
30927 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
30992 ACTATAAACACACTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * *
31014 TAGGATAAACGATATTCACGATTTTGTTTTGCATGGAAATCCTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
31079 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATTCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
31144 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGGGCCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
31209 AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTCTCTCTTAAAAAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
31274 TTGTCATGCTAATCCCCATTCTTTTCATGATTCGGCGCCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
31339 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
31404 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
31469 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * *
31491 TAGGATAAACGATATTCACGATTTTCTTTTGCAAGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * * *
31556 TTTC-AAATTCATCCCACAGTTATGACAAGCTTTGATTCTCGTAAGAGACTCCATGCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
31620 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACGTGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
31685 AAATGTTTTCTTTCCACCGTTTTCGATAGAAGTAAAGTTTGTCTCTTAAATAAGACATACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
** * * * * * * *
31750 TCATCATGCTACTCCTCATTCCTTTCCTGGTTAGGCACCATAAACTTTCTCTTCTCATAAGCATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
31815 CACGA-TATTGATTCTTTCGTTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
31879 GTTTGTGCCTCAAATGAGATAAAC---GATTCTAGTAATCATCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* * *
31941 AATATAAACACGTTCACCTCAT
456 ACTATAAACACATTCTCCTCAT
* * * *
31963 TAGGATAAATGATATTCACGATTTTCTTTTGCTTGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * * *
32028 TATCAAAATTCAACCCATAGTTATGACGAGCATCGATTCTCGTAAGAGTG-TCCATTCTATTCGA
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG-GCTCCATGCTTTTCGA
* * * * *
32092 GATT-GGAGCTAAGAACACATTCCCATCATTAGAATACATGATATTGATGCTTTGGTGTCGCGAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
*
32156 AAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
32221 ATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
*
32286 ACACGATTATTGAGGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
32351 AGTTCGTGCATCAAATGAGAAAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
*
32416 CACTGTAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* *
32439 TAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* ** * * *
32504 TATCAAAATTCAACAAATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
32569 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
32634 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
32698 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTAATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
*
32763 ACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * * * *
32828 AGTTCGTGCATGAAATGAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGAATAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
32893 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* *
32916 TAGGATAGACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* ** * * *
32981 TATCAAAATTCAACAAATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
33046 ATTGGGAGCTAAGAACACATTCCCTTCGTAAGGATACATGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
33111 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTTTTAAATAAGACAAACAAAA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
33175 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCATCTAATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
33240 ACATGATTATTGATGCTTTGGTTTCGTAAGGAAGGCTTTCTTGTCACCAATTTTTGTACAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
33305 AGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
*
33370 CACTATAAACACATTCTCCTTAT
455 CACTATAAACACATTCTCCTCAT
* * *
33393 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
** * * *
33458 TATCAAAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
33523 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCGAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
**
33588 AAATGTTTTCTTTCCACTATTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
33653 TTGTCATGCTAAT-CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTAATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
*
33717 -ACGATTATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
33781 GTTCGTGCATCAAATGAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
33846 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* *
33868 TAGGATAAAAGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* ** * * *
33933 TATCAAAATTCAACAAATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
33998 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
34063 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
34127 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAGTTTGTCTTCTAATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
*
34192 ACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * * *
34257 AGTTTGTGCCTCAAATGAGTCAAATGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
34322 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* * *
34345 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTAGTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
** * * *
34410 TATCAAAATTCATCCTGTAATTTTGACAAGCTTCGATTCCCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
34475 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
34540 AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTCAAGTTTCTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
34605 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
34670 CATGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
34735 GTTCGTGCCTC-AATGAGGCAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
34799 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * *
34821 TAGGATAAATGAGATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTT-GCCTCATTTTCCTTA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCT-ATTTTCCTTA
* * * *
34885 ATATTAAAATTCATCCCATAATTATGACAAGTTTCGATTCTCGTAAAAGGCTCCACGCTTTTCGA
65 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
* *
34950 GATTTGGAGCTAAGAACACATTCCCTTCATAAGGCTACATGACATTGATGCTTTGGTGTCGCAAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
*
35015 AAAATGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* * * * *
35080 ATTGTCATGCTAATCCCCATTCCTTTCATGATTAGGCACTATAAACTTTGTCTCCTCATAGGGAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* *
35145 ACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
** * * * * * *
35209 AGTTTATACCGCAAATGTGACAAACGAGGATTCTAGTCATGATGTTCATTCTTTTTGTAATTATG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-G
* * * **
35274 G-GCTATAACCACAATCTTGTCAT
454 GCACTATAAACACATTCTCCTCAT
* * * * *
35297 TAGGATAAATGATATTCAAGATTTTTTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* *
35362 TATCAAAATTCATCCCATAATTATGACATGCTTCGATTCTCGTAAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
35427 ATTGGGAGCAAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
35492 AAATGTTTTCTTTCCCCCGTTTTTTATAGAAGTAAAGTTTGTCTCATAAATAAGATAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
35557 TTGTCATGCTAATCCCCATTCTTTTCATTATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
35622 CAGGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
35687 GTTCGTGCCTCAAATGAGACAAACGAGGATTCCAGTAATGCTCTTCATTCTTTTTGTGATTAGGA
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* *
35752 ACTATAAACACACTCTCCTTAT
456 ACTATAAACACATTCTCCTCAT
* * *
35774 TAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCCTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
35839 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
35904 ATTCGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGGCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
35969 AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTCTCTATTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
36034 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * *
36099 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTATTGTCACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
36164 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTATTAATCTTCATTCTTTTTGCGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
36229 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
* * *
36251 TAGGATAAACGATATTCACGATTTTCTTTTGCACGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
36316 TATCAAAATTCAACCCGTAATTTTGACAAGCTTCGATTCTCGTAAGACGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
36381 ATTCGGAGCTAAGAACATATTACCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
36446 AAATGTTTTCTTTCCGCCATTTTTTATAGAAGTAAAGTTTCTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
36511 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* *
36576 CATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
*
36641 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGCTCTTCATTCTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* *
36706 ACTATAAACACACTCTCCTTAT
456 ACTATAAACACATTCTCCTCAT
* * * **
36728 TAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCCTTTCTTGATGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
36793 TATCAAAATTCAT-CTAGTAATTTTGACAAGCTTCGCTTCTCGTAAGTGGCTCCATGCCTTTCGA
66 TATCAAAATTCATCCCA-TAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
*
36857 GATTCGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * * *
36922 AAAATGTTTTCTTTTCGCCGTTTTTTATAGAAGTAAAGTTTCTCCCTTAAATAAAACAAACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
36987 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * * * *
37052 ACACGA-TATTGTTTCTTTCGTTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * *
37116 AGTTTGTGCCTCAAATAAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
* * *
37178 CAATATAAACACGTTCACCTCAT
455 CACTATAAACACATTCTCCTCAT
* * *
37201 TAGGATAAACGATATTCACGATTTTCTTTTGCTTGGAAATCTTTTCCTTT-CCCTTTTTTTGCTT
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTT-CTTTACCC-TATTTTCCTT
* * * *
37265 AATATCAAAATTCAACCCATAGTTATGACAAGCATCGATTCTCGTAAGAGTCTCCACT-CTTTTC
64 AATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCA-TGCTTTTC
* * * *
37329 GAGATT-GGAGCTAAGAACACATTCCCTTCATTAGAATACATGATATTGATGCTTTGGTGTCGCG
128 GAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCA
*
37393 AGAAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
193 AGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
*
37458 GAATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGT
258 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGT
37523 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
323 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
* *
37588 TAAGTTCGTGTCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTA
388 TAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
37653 GGCACTATAAACACATTCTCCTCAT
453 GGCACTATAAACACATTCTCCTCAT
*
37678 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
37743 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * * *
37808 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATAAAAGACATTGATGCTTTTGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
37873 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
37937 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
** * * *
38002 ACTTGATTATTGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * * *
38067 AGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATTTTCATTCTTTTTTTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
38132 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
38155 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
38220 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
38285 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
38350 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
38414 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
** * * *
38479 ACTTGATTATTGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * * *
38544 AGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATTTTCATTCTTTTTTTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
38609 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
38632 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
38697 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
38762 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
38827 AAATGTTTTC-TTCCTGCCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
38891 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
38956 ACACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTATAGTCAA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
39021 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
39086 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
39109 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
39174 TATCAAAATTCAACCCATAAATATGAAAAGCATT-GATTC-CTGTAAGAGGCTCCATTCTTTTCA
66 TATCAAAATTCATCCCATAATTATGACAAGC-TTCGATTCTC-GTAAGAGGCTCCATGCTTTTCG
*
39237 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAA
129 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
39302 GAAAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
194 GAAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
* * *
39366 GAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACATTGTCTTCTCATAAGG
258 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGT
* * * **
39431 ATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGTCCCCGTTTTTTGTAAAGTC
323 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
** ** * *
39495 TAAGTTTATGCGGCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTAATTA
388 TAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
* **
39560 CGG-GCTATAAACACATTCTTGTCAT
453 -GGCACTATAAACACATTCTCCTCAT
* * *
39585 TAGGATAAATGATATTCACGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
39650 TATCAAAATTCATCCCATAATTATAACATGCTTCAATTCTCGTAAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
39715 ATTGGGAGCTAAGAACATATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTTTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
39780 AAATGTTTTCTTTCC-CCAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCCACC-GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
39844 ATTGTCCTGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* *
39909 ACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
39974 AGTTCGTGGCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
40039 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
40062 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
40127 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * * *
40192 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATAAAAGACATTGATGCTTTTGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
40257 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
40321 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
** * * *
40386 ACTTGATTATTGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * * *
40451 AGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATTTTCATTCTTTTTTTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
40516 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
40539 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
40604 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
40669 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
40734 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* * *
40798 ATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACATTGTCTTCTCATAAGGAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * **
40863 ACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGTC-CCCGTTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
** ** * *
40926 AGTTTATGCGGCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTAATTACG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-G
* **
40991 G-GCTATAAACACATTCTTGTCAT
454 GCACTATAAACACATTCTCCTCAT
* * *
41014 TAGGATAAATGATATTCACGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
41079 TATCAAAATTCATCCCATAATTATAACATGCTTCAATTCTCGTAAGAGGCTCCATGCTTTACGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
41144 ATTGGGAGCTAAGAACATATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTTTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
41209 AAATGTTTTCTTTCC-CCAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCCACC-GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
*
41273 ATTGTCCTGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* *
41338 ACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
*
41403 AGTTCGTGGCTCAAATGAGACAAACGAGGATTCTAGTAATGCA-CTTCATTCTTTTTGTGATTAG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATG-ATCTTCATTCTTTTTGTGATTAG
* * *
41467 GGACTATAAACACACTCTCCTTAT
454 GCACTATAAACACATTCTCCTCAT
* * * *
41491 TAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCCTTTCTTGACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
41556 TATCAAAATTCATCCCGTAATTTTGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCCTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
41621 ATTCGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * *
41686 AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGTAAAGTTTCTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
41751 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTTTCTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
41816 CACGGTTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTATTGCCACCAATTTTTGTATAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* *
41881 GTTCGTGCCTTAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGCGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
*
41946 ACTATAAACACATTCTCCTTAT
456 ACTATAAACACATTCTCCTCAT
* * *
41968 TAGGATAAACGATATTCACGATTTTCTTTTGCACGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
42033 TATCAAAATTCATCCCACAATTATGACAAGCTTCGATTCTCGTAAAAGACTCCATGCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
42098 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACGTGACATTGATGCTTTGGTGTTAG-AAG
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTG-TCGCAAG
* *
42162 AAAATGTTTTCTTTCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAGACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
** * * * * * *
42227 ATCATCGTGCTACTCCCCATTCTTTTCCTGATTAGGCACCTTAAACTTTCTCTTCTCATAAGGAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* ** * *
42292 ACACGA-TATTGATTCTTTCATTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * *
42356 AGTTTGTGCCTCAAATGAGATAAAC---GATTCTAGTAATGATCTTCATTCTTTTTGGGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
* * *
42418 CAATATAAACACGTTCACCTCAT
455 CACTATAAACACATTCTCCTCAT
* * * * * *
42441 TAGGATAAACAATATTCACGATTTTCTTTTCCTTGGAAATCTTTTCTTTTCCCTTTTTTTGCTTA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCC-TATTTTCCTTA
* * * * *
42506 ATATCAAAATTCAACCCATAGTTATGACAAGCATCGATTCTCGTAAGAGTCTCCATTCTTTTCGA
65 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
* * * *
42571 GATT-GGAGCTAAGAACACATTCCCTTCATTAGAATACATGATATTGATGCTTTGGTGTCGCGAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
*
42635 AAAATGTTTTCTTTCCACTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
195 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
** * *
42700 ATTGTCATGCTAATCCTTATTTTTTTCATGATTAGGCACCATAAACTTTATCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
*
42765 ACACGATTATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
42830 AGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTATTGATCTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
42895 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* *
42918 TAGGATAAACGATATTCACGATTCTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
42983 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
43048 ATTGGGAGCTAAGGACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
43113 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
43177 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
** * *
43242 ACTTGATTATTGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
43307 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATTTTCATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
43372 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
43395 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
43460 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
43525 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
43590 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
43654 ATTGTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * * * *
43719 ACATGATTATTAAAGCTTTGGTTTCTTAAGACAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* * *
43784 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATTTTCATTCTTTTTGTGATTTGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
43849 CACTATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* * *
43872 TAGGATAAACGATATTCACGATTTTTTTTTGCATGAAAATCTTTTCTTTACGCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
43937 TATCAAAATTCAACCCATAAATATGAAAAGCATT-GATTC-CTGTAAGAGGCTCCATTCTTTTCA
66 TATCAAAATTCATCCCATAATTATGACAAGC-TTCGATTCTC-GTAAGAGGCTCCATGCTTTTCG
*
44000 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAA
129 AGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
* *
44065 GAAAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTCAATAAGACAAATAA
194 GAAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
* *
44129 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATTGTCTTCTCATAAGG
258 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGT
* * *
44194 ATACACTA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTC
323 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
* * *
44258 TAAATTTC-TGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTTATTCTTTTTGCGATT
388 T-AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATT
*
44322 AGGCACTATAAACACAATCTCCTCAT
452 AGGCACTATAAACACATTCTCCTCAT
* *
44348 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* *
44413 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGACTCCATGCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* *
44478 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACGTGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
44543 AAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAGACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* * * * *
44608 TCGTCATGCTACTCCCCATTCTTTTCCTGATTAGGCACCATAAACTTTCTCTTCTCATAAGGATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * *
44673 CACGA-TATTGATTCTTTCGTTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * * * *
44737 GTTTGAGCCTCAAATGAGACGAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* * *
44802 GCTATAAACACATTCTCGTCTT
456 ACTATAAACACATTCTCCTCAT
* * * *
44824 TAGGATAAATGATATTCACGATTTTTTTTTGCATGGAAATCTTGTT-TTTGCCCTATTATCCTTA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT-TTCTTTACCCTATTTTCCTTA
*
44888 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTCCGA
65 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
* *
44953 GATTGGGAGCTAAGGACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAG
130 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* *
45018 AAAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTCAATAAGACAAATAAG
195 AAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
* * * * *
45082 AATTGTCAAGCTAATCCCCGTTCTTTTCATGATTAGGCACCATAAACATTGTCTTGTCATAAGGA
259 AATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTA
* * *
45147 TACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACTAAATTTTGTAAAGTCT
324 TACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
* * *
45211 AAATTTC-TGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTTATTCTTTTTGCGATTA
389 -AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
*
45275 GGCACTATAAACACAATCTCCTCAT
453 GGCACTATAAACACATTCTCCTCAT
* *
45300 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
45365 TATCAAAATTCATCCCACAATTATGACAAGCTTCGATTCTCGTAAGAGACTCCATGCTTTTCAAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
* * *
45430 ATTGGGAGCTAAGAACACATTCCTTTCATAAGGATACGTGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
45495 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAGACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* * * * *
45560 TCGTCATGCTACTCCCCATTCTTTTCATGATTAGGCACCTTAAACATTGTGTTCTCATAAGTATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
*
45625 CACGATTATTGTTGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* *
45690 GCTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTGTTTTTGTGATTAGGC
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
45755 ACTATAAACACATTCTCCTCAT
456 ACTATAAACACATTCTCCTCAT
*
45777 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACACTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * *
45842 TATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTTGTAAGAGGCTCCATTCTTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
45907 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
45972 AAATGTTTTC-TTCCTACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAATAAGA
196 AAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* * *
46036 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACAATAAACATTGTCTTCTCATAAGGAT
260 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTAT
* * *
46101 ACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTATTGTCACTAATTTTTGTAAAGTCTA
325 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
* *
46165 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAAAGATCTTTATTCTTTTTGTGATTAGG
390 AGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
* *
46230 CACCATAAACACGTTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
*
46253 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * * * *
46318 TATCAAAATTCATCCCATAATTGTGACTAGTTTCGATTCTCGTAAGAGGCTCCATGCTTTTTGGG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
*
46383 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCTAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
46448 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* *
46513 TTGTCATGCTAATCCCCATTCTTTCCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * * *
46578 CACGA-TATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAA
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* *
46642 GTTCGTGCCTCAAATGAGACAAACAAGGATTCTAG-ACATGATCTTCATTGTTTTTGTGATTAGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA-ATGATCTTCATTCTTTTTGTGATTAGG
* *
46706 GACGATAAACACATTCTCCTCAT
455 CACTATAAACACATTCTCCTCAT
* *
46729 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCTTAA
1 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
* * *
46794 TGTCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
66 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
46859 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
*
46924 AAATGTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
196 AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
*
46989 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATA
261 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
* * * * *
47054 CAC-AATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTAT
326 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
* * *
47118 GTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGG
391 GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
* *
47183 ATTATAAACACATTCTTCTCAT
456 ACTATAAACACATTCTCCTCAT
* *
47205 TAAGATAAATGATATTCACGATTTTCTTTT
1 TAGGATAAACGATATTCACGATTTTCTTTT
47235 CCACCGTTTT
Statistics
Matches: 36718, Mismatches: 2649, Indels: 393
0.92 0.07 0.01
Matches are distributed among these distances:
472 303 0.01
473 1799 0.05
474 1606 0.04
475 1837 0.05
476 7629 0.21
477 23481 0.64
478 63 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (477 bp):
TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAA
TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAG
ATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
AAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATA
CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
GTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC
ACTATAAACACATTCTCCTCAT
Found at i:8122 original size:159 final size:157
Alignment explanation
Indices: 7470--60603 Score: 5893
Period size: 159 Copynumber: 335.4 Consensus size: 157
7460 ATGCTAATCC
* * * * *
7470 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * *
7534 CTTTGGTTTCGTAAGAAAGGCTTTATTGTCACCAATTTTTGTATAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* **
7599 TGAGACAAACGAGGATTCTAGTATTAATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
7629 TCATTCTTTTTGCGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** * * * * *
7694 TTTCTTTTGCACGGAAA-TCTTTTCTTTTCCCTTTTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * *
7756 ATTTTGACAAGCTTCGATTCTCGTAA-GACGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
7788 CCATGCCTTTCGAGATTCGG-AGC-TAAGAACATATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
7850 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCATTTTTTATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * *
7911 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
7947 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
8011 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
8076 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * ***
8106 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTTATTAGGATAAACGATATTCACAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * * *
8171 TTTCTTTTGCATGGAAATCCTTTCTTGAT-GCTATTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGCTTTCTTG-TCCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * * **
8233 ATTTTGACAAGCTTCGCTTCTCGTAA-GAGGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
8265 CCATGCCTTTCGAGATTCGG-AGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * *
8327 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTTCGCC-GTTTTTTATAGAAGT-AAAGTTTC-TCCC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTC-CCAATTTTTGA-A-AAGTCAAAG-TTCGTGCC
* * * * * *
8389 TTAAATAAAACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
8424 CCATTCTTTTCATGATTAGGGACCATAAAC-TTTGTCTTCTCATAAGTATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* ** * * * *
8488 TTTCGTTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* *
8553 GAGATAAAC---GATTCTAGTAATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * ** ** * * * * * *
8579 TCATTCTTTTTGTGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * ** * ** * * **
8644 TTTCTTTTGCTTGGAAA-TCTTTTCCTT-TCCCTTTTTTTGCTTAATA-TCAAAATTC-AACC-C
66 TTGGTTTCGC-AAGAAAGGC-TTT-CTTGTCCCAATTTTTG---AAAAGTCAAAGTTCGTGCCTC
* * * * * *
8704 ATAGTTATGACAAGC-ATCGATTCTCGTAA-GAGTCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
8739 CCATTCTTTTCGAGATT-GG-AGC-TAAGAACACATTC-CCTTCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
8800 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
8862 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
8897 CCATTTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
8961 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
9026 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
9056 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
9121 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
9181 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
9215 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
9277 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
9339 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * **
9374 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACTTGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * * *
9438 CTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * * *
9503 TGAGACAAATGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* ** * * * * * * *
9533 TCATTCTTTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
9598 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
9658 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
9692 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * * *
9754 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTGCC-GTTTTTTATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
9816 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * *
9851 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * *
9915 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTATAGTCAAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
9980 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
10010 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * ***
10075 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCAACCCAT-
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TC
** **
10136 AAAT-ATGA-AAA-GCATTAATTCCT-GTAA-GAGGCT
125 AAATGA-GACAAACG-A-GGATT-CTAGTAATG-CTCT
** * * * * *
10169 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
10231 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
10293 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
10328 CTATTCTTTTCATGATTAGGCACCATAAACAT-TGTCTTCTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* ** * * ** **
10392 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCGTTTTTTGTAAAGTCTAAGTTTATGCGGCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGT-CCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* *
10457 GAGACAAACGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * ** * * * * * *
10486 TCATTCTTTTTGTAATTACGG-GCTATAAACACATTCTTGTCATTAGGATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
10550 TTTTATTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * ** *** * **
10610 ATAATTATAACATGCTTCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
10645 CCATGCTTTACGAGATT-GGGAGC-TAAGAACATATTC-CCTTCATCAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
10707 GCTCTGGTTTCGCAAGAAAATGTTTTCTT-TCCCCAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * *
10769 TTAAATAAGACAAACAAGAATTGTCCT-GCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-T-CTAG-TAATGCTCT
* * * * *
10804 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
10868 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
10933 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
10963 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * ***
11028 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCAACCCAT-
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TC
* **
11089 AAAT-ATGA-AAA-GCATTGATTCCT-GTAA-GAGGCT
125 AAATGA-GACAAACG-A-GGATT-CTAGTAATG-CTCT
** * * * * *
11122 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
11184 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
11246 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
11281 CTATTCTTTTCATGATTAGGCACCATAAACAT-TGTCTTCTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* ** * * ** **
11345 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCGTTTTTTGTAAAGTCTAAGTTTATGCGGCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGT-CCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * *
11410 GAGACAAACGAGGATTGTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * ** * * * * * *
11439 TCATTCTTTTTGTAATTACGG-GCTATAAACACATTCTTGTCATTAGGATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
11503 TTTTATTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * ** *** * *
11563 ATAATTATAACATGCTTCGATTCTCGTAATAG-GCT
125 A-AATGA-GACAAACGAGGATTCTAGTAAT-GCTCT
* * * * * * *
11598 CCATGCTTTACGAGATT-GGGAGC-TAAGAACATATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** *
11660 GCTTTGGTTTCGCAGGAAAATGTTTTCTT-TCCGCCGTTTTTTATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * * *
11721 CTTAAATAAAACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
11757 CCATTCTTTTCATAATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * * *
11821 CTTTGGTTTCGTAAGAAAGGCTTTATTGTCACCAATTTTTGTATAGTCTAAGTTCGTGCCTTAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
11886 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * *
11916 TCATTCTTTTTGCGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** * * * *
11981 TTTCTTTTGCACGGAAA-TCTTTTCTTTTCCCTTTTTTCCTTAATA-TCAAAATTCAT-CC-CAC
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA-
* * **** * **
12042 AATTATGACAAGCTTCAATTCTCGTAA-GAGACT
126 AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * ** *
12075 CCATGCTTTTCAAGATT-GGGAGC-TAAGAAAACATTC-CCTTCATAAGGATACGTGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
12137 GCTTTGGTGTTAG-AAGAAAATGTTTTCTT-TCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-C
63 GCTTTGGT-TTCGCAAG-AAAGGCTTTCTTGTC--CCAATTTTTGA-A-AAGTCAAAGTTCGTGC
* * * * * *
12197 TCTTAAATAAGACAGAC-AAGAATC-A-TCATGCTACT
122 -CTCAAATGAGACAAACGAGGATTCTAGTAATGCT-CT
* * *
12232 CCCAATTCGTTTCCTGATTAGGCACCATAAAC-T-TTCTCTTTTCATAAGGATACACGATATTGA
1 -CC-ATTCTTTTCGTGATTAGGCACCATAAACATATTCTC--CTCATAAGGATACACGATATTGA
* ** ** * * * * *
12295 TTCTTTCATTTCGTTAGAAAGGCTTTCTTGTTACTAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
62 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTG-TCCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCA
* *
12360 AATGAGATAAAC---GATTCTAGTAATGATCT
126 AATGAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** ** * * * * * *
12389 TCATTCTTTTTGGGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATG-C
** ** * * ** * * **
12454 TTTCTTTTC-CTTGGAAA-TCTTTTCTTTTCCCTTTTTTTGCTTAATA-TCAAAATTC-AACC-C
65 TTTGGTTTCGC-AAGAAAGGC-TTTCTTGTCCCAATTTTTG---AAAAGTCAAAGTTCGTGCCTC
* * * * * *
12514 ATAGTTATGACAAGC-ATCGATTCTCGTAA-GAGTCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
12549 CCATTCTTTTCGAGATT-GG-AGC-TAAGAACACATTC-CCTTCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * **
12610 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * *
12671 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
12707 CCATTTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGAAG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
12771 CTTTGGTTTCGTAAGAAATGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
12836 TGAGACAAACGAGGATTCTAGTATTGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
12866 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * * * * * * * **
12931 TCT-CTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-C
66 T-TGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * * * **
12990 ATAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
13025 CCATTCTTTTCAAGATT-GGGAGC-TAAGGACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCATAA--ACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
13087 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
13149 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * **
13184 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACTTGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * *
13248 CTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
13313 TGAGACAAACGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
13343 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * * **
13408 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TTAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
13468 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * ** * *
13502 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACGCATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * * *
13564 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTTATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
13626 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** ** * * * *
13661 CTATTCTTTTCAAGATTACTCACCATAAAC-TTTGTCTTCTCATAAGTATACACTGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * *
13725 CTTTGGTTTCGTAAGAAAGGATTTCTTGTCACCAATTTTTGTATAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
13790 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * ** * * * * * *
13820 TCATTCTTTTTGTGATTACGG-GCTATAAACACAATCTTGTCATTAGGATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
13884 TTTTATTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* ** *** * **
13944 ATAATTATGACATGCTTCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
13979 CCATGCTTTACGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
14041 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTTATAGAAG-CAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * *
14103 TTAAA-GAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATG-AGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
14138 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
14202 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCAAACTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
14267 TGAGGCAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * * *
14297 TCATTCTTTTTGTGATTTGGGACTATAAACACATTCTCCTCATTAA-GATAAATGAGATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATGC
** * * * * * * * * *
14361 TTTTCTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTTCCTTAATA-TTAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* *** * *
14421 ATAATTATGACAAACTTTGATTCTCA-TAAAG-GCT
125 A-AATGA-GACAAACGAGGATTCT-AGTAATGCTCT
** ** * * * * * *
14455 CCACGCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACACTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
14517 GCTTTGGTGT-ACAAGAAAATGTTTTATT-TCCACAGTTTTTGATAGATGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * **
14578 TTAAATAAGACACACAAGAATTGTCATTCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-TC-TAGTAATGCTCT
* * * *
14613 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
14677 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
14742 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * *
14772 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTATGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * ** * * * * * *
14837 TTTCTTTTGCGTGGAAA-TCTTTTCTT-TGCCCGATTTTCTTTAATA-TCAAAATTCAT-CC-CA
66 TTGGTTTCGC-AAGAAAGGC-TTTCTTGT-CCC-AATTT-TTGAAAAGTCAAAGTTCGTGCCTCA
* * *** * ** *
14897 TAATTATGACAAGCTTCGATTC-ACATAA-GAGGCA
126 -AATGA-GACAAACGAGGATTCTA-GTAATG-CTCT
* * * * * *
14931 CCATGCTTTTCGAGATT-GGGAGC-TAAGA-ACTCATTC-CCTTCATAAGGATACATGACATTGA
1 CCATTCTTTTCGTGATTAGGCACCATAA-ACA-T-ATTCTCC-TCATAAGGATACACGATATTGA
* * * ** *
14992 TGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCGTTTTTTATAGAAGT-AAAGTTTC-T-C
62 TGCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC
* * * * * *
15053 TCTTAAATAAAACAAACAAGAATTGTCATGCTAAT-C-C-
122 -CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
15090 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
15154 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
15219 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * ***
15249 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTTATTAGGATAAACGATATTCACAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * * *
15314 TTTCTTTTGCATGGAAATCCTTTCTTGAT-GCTATTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGCTTTCTTG-TCCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * * **
15376 ATTTTGACAAGCTTCGCTTCTCGTAA-GAGGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
15408 CCATGCCTTTCGAGATTCGG-AGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * *
15470 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTTCGCC-GTTTTTTATAGAAGT-AAAGTTTC-TCCC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTC-CCAATTTTTGA-A-AAGTCAAAG-TTCGTGCC
* * * * * *
15532 TTAAATAAAACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
15567 CCATTCTTTTCATGATTAGGGACCATAAAC-TTTGTCTTCTCATAAGTATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* ** ** * * *
15631 TTTCGTTTCGTTAGAAAGGCTTTCTTGTCATTAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* *
15696 GAGATAAAC---GATTCTAGTAATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** ** * * * * * *
15722 TCATTCTTTTTGAGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * ** * ** * * **
15787 TTTCTTTTGCTTGGAAA-TCTTTTCCTT-TCCCTTTTTTTGCTTAATA-TCAAAATTC-AACC-C
66 TTGGTTTCGC-AAGAAAGGC-TTT-CTTGTCCCAATTTTTG---AAAAGTCAAAGTTCGTGCCTC
* * * * * *
15847 ATAGTTATGACAAGC-ATCGATTCTCGTAA-GAGTCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
15882 CCATTCTTTTCGAGATT-GG-AGC-TAAGAACACATTC-CCTTCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
15943 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
16005 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
16040 CCATTTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
16104 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
16169 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
16199 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
16264 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
16324 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
16358 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
16420 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
16482 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * **
16517 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACTTGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * * *
16581 CTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * * *
16646 TGAGACAAATGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* ** * * * * * * *
16676 TCATTCTTTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
16741 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
16801 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
16835 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * * *
16897 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTGCC-GTTTTTTATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
16959 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * * *
16994 CTATTCTTTTCAAGATTAGGCCCCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * *
17058 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTATAGTCAAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
17123 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
17153 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * ***
17218 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCAACCCAT-
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TC
** **
17279 AAAT-ATGA-AAA-GCATTAATTCCT-GTAA-GAGGCT
125 AAATGA-GACAAACG-A-GGATT-CTAGTAATG-CTCT
** * * * * *
17312 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
17374 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
17436 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
17471 CTATTCTTTTCATGATTAGGCACCATAAACAT-TGTCTTCTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* ** * * ** **
17535 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCGTTTTTTGTAAAGTCTAAGTTTATGCGGCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGT-CCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* *
17600 GAGACAAACGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * ** * * * * * *
17629 TCATTCTTTTTGTAATTACGG-GCTATAAACACATTCTTGTCATTAGGATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
17693 TTTTATTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * ** *** * * **
17753 ATAATTATAACATGCTTCGATTCTCGCAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
17788 CCATGCTTTACGAGATT-GGGAGC-TAAGAACATATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
17850 GCTCTGGTTTCGCAAGAAAATGTTTTCTT-TCCCCAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * *
17912 TTAAATAAGACAAACAAGAATTGTCCT-GCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-T-CTAG-TAATGCTCT
* * * * *
17947 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
18011 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
18076 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
18106 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * ***
18171 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCAACCCAT-
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TC
* **
18232 AAAT-ATGA-AAA-GCATTGATTCCT-GTAA-GAGGCT
125 AAATGA-GACAAACG-A-GGATT-CTAGTAATG-CTCT
** * * * * *
18265 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
18327 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
18389 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
18424 CTATTCTTTTCATGATTAGGCACCATAAACAT-TGTCTTCTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* ** * * ** **
18488 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCGTTTTTTGTAAAGTCTAAGTTTATGCGGCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGT-CCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* *
18553 GAGACAAACGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * ** * * * * * *
18582 TCATTCTTTTTGTAATTACGG-GCTATAAACACATTCTTGTCATTAGGATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
18646 TTTTATTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * ** *** * **
18706 ATAATTATAACATGCTTCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
18741 CCATGCTTTACGAGATT-GGGAGC-TAAGAACATATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** *
18803 GCTTTGGTTTCGCAGGAAAATGTTTTCTT-TCCGCCGTTTTTTATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * * *
18864 CTTAAATAAAACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
18900 CCATTCTTTTCATAATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * * *
18964 CTTTGGTTTCGTAAGAAAGGCTTTATTGTCACCAATTTTTGTATAGTCTAAGTTCGTGCCTTAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
19029 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * *
19059 TCATTCTTTTTGCGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** * * * *
19124 TTTCTTTTGCACGGAAA-TCTTTTCTTTTCCCTTTTTTCCTTAATA-TCAAAATTCAT-CC-CAC
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA-
* * **** * **
19185 AATTATGACAAGCTTCAATTCTCGTAA-GAGACT
126 AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * ** *
19218 CCATGCTTTTCAAGATT-GGGAGC-TAAGAAAACATTC-CCTTCATAAGGATACGTGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
19280 GCTTTGGTGTTAG-AAGAAAATGTTTTCTT-TCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-C
63 GCTTTGGT-TTCGCAAG-AAAGGCTTTCTTGTC--CCAATTTTTGA-A-AAGTCAAAGTTCGTGC
* * * * * *
19340 TCTTAAATAAGACAGAC-AAGAATC-A-TCATGCTACT
122 -CTCAAATGAGACAAACGAGGATTCTAGTAATGCT-CT
* *
19375 CCCAATTCGTTTCCTGATTAGGCACCATAAAC-T-TTCTCTTCTCATAAGGATACACGATATTGA
1 -CC-ATTCTTTTCGTGATTAGGCACCATAAACATATTCTC--CTCATAAGGATACACGATATTGA
* ** ** * * * * *
19438 TTCTTTCATTTCGTTAGAAAGGCTTTCTTGTTACTAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
62 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTG-TCCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCA
* *
19503 AATGAGATAAAC---GATTCTAGTAATGATCT
126 AATGAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** ** * * * * * *
19532 TCATTCTTTTTGGGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATG-C
** ** * * ** * * **
19597 TTTCTTTTC-CTTGGAAA-TCTTTTCTTTTCCCTTTTTTTGCTTAATA-TCAAAATTC-AACC-C
65 TTTGGTTTCGC-AAGAAAGGC-TTTCTTGTCCCAATTTTTG---AAAAGTCAAAGTTCGTGCCTC
* * * * * *
19657 ATAGTTATGACAAGC-ATCGATTCTCGTAA-GAGTCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
19692 CCATTCTTTTCGAGATT-GG-AGC-TAAGAACACATTC-CCTTCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * **
19753 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * *
19814 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
19850 CCATTTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGAAG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * * *
19914 CTTTAGTTTCGTAAGAAATGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
19979 TGAGACAAACGAGGATTCTAGTATTGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
20009 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * * * * * * * **
20074 TCT-CTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-C
66 T-TGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * * * **
20133 ATAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
20168 CCATTCTTTTCAAGATT-GGGAGC-TAAGGACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCATAA--ACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
20230 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
20292 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * **
20327 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACTTGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * *
20391 CTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
20456 TGAGACAAACGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
20486 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * * **
20551 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TTAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
20611 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * ** * *
20645 CCATTCTTTTCAAT-ATT-GGGAGC-TAAGAACGCATTC-CCTTCATAAGGATACAAGACATTGA
1 CCATTCTTTTC-GTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGA
* * * * * * * * *
20706 TGCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTTATAGAAGT-AAAGTTTGT-CT
62 TGCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-
* * * * *
20768 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** ** * * * *
20804 CTATTCTTTTCAAGATTACTCACCATAAAC-TTTGTCTTCTCATAAGTATACACTGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * *
20868 CTTTGGTTTCGTAAGAAAGGATTTCTTGTCACCAATTTTTGTATAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
20933 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * ** * * * * * *
20963 TCATTCTTTTTGTGATTACGG-GCTATAAACACAATCTTGTCATTAGGATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
21027 TTTTATTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* ** *** * **
21087 ATAATTATGACATGCTTCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
21122 CCATGCTTTACGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
21184 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTTATAGAAG-CAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
21246 TTAGA-GAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATG-AGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
21281 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
21345 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCAAACTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
21410 TGAGGA-AAACGAGGATTCTAGTCATGATCT
128 TGA-GACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * * *
21440 TCATTCTTTTTGTGATTTGGGACTATAAACACATTCTCCTCATTAA-GATAAATGAGATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATGC
** * * * * * * * * *
21504 TTTTCTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTTCCTTAATA-TTAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* *** *
21564 ATAATTATGACAAACTTTGATTCTCA-TAGA-G-GCT
125 A-AATGA-GACAAACGAGGATTCT-AGTA-ATGCTCT
** ** * * * * * *
21598 CCACGCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACACTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * *
21660 GCTTTGGTGT-ACAAGAAAATGTTTTCTT-TCCACAGTTTTTGATAGATGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * **
21721 TTAAATAAGACACACAAGAATTGTCATTCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-TC-TAGTAATGCTCT
* * * *
21756 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
21820 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
21885 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
** * * * * * * * * * *
21915 TAATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTATGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * ** * * * * * *
21980 TTTCTTTTGCGTGGAAA-TCTTTTCTT-TGCCCGATTTTCTTTAATA-TCAAAATTCAT-CC-CA
66 TTGGTTTCGC-AAGAAAGGC-TTTCTTGT-CCC-AATTT-TTGAAAAGTCAAAGTTCGTGCCTCA
* * *** * ** *
22040 TAATTATGACAAGCTTCGATTC-ACATAA-GAGGCA
126 -AATGA-GACAAACGAGGATTCTA-GTAATG-CTCT
* * * * * *
22074 CCATGCTTTTCGAGATT-GGGAGC-TAAGA-ACTCATTC-CCTTCATAAGGATACATGACATTGA
1 CCATTCTTTTCGTGATTAGGCACCATAA-ACA-T-ATTCTCC-TCATAAGGATACACGATATTGA
* * * ** *
22135 TGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCGTTTTTTATAGAAGT-AAAGTTTC-T-C
62 TGCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC
* * * * * *
22196 TCTTAAATAAAACAAACAAGAATTGTCATGCTAAT-C-C-
122 -CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
22233 CCATTCTTTTCATAATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * *
22297 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
22362 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * ** * **
22392 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTATGATAAATTATATTCACTAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGA-TGC
** * * * ** * *
22457 TTTCATTT-GCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCATAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTTTGA-AA-AGTCAAAGTTCGTGCCTC
* ** *** * *
22516 ATAATTATGACATGCTTCGATTCTCGTTAGA-G-GCT
125 A-AATGA-GACAAACGAGGATTCTAG-TA-ATGCTCT
* * * * * * * * *
22551 CCATGCTTTACGAGATT-GGGAGCTAAAAACACATTC-CCTTCATAAGGATACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCA-CCATAAACATATTCTCC-TCATAAGGATACACGATATTGATG
* * * ** *
22614 CTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTTTGT-CTCT
64 CTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-CT
* * * * *
22676 TAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 CAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
22710 CCATTCTTTTCATGATTAGGCACCAGAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
22774 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
22839 TGAGATAAAC---GATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** ** * * * * * *
22866 TCATTCTTTTTGGGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATG-C
** ** * * ** * * **
22931 TTTCTTTTC-CTTGGAAA-TCTTTTCTTTTCCCTTTTTTTGCTTAATA-TCAAAATTC-AACC-C
65 TTTGGTTTCGC-AAGAAAGGC-TTTCTTGTCCCAATTTTTG---AAAAGTCAAAGTTCGTGCCTC
* * * * * *
22991 ATAGTTATGACAAGC-ATCGATTCTCGTAA-GAGTCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
23026 CCATTCTTTTCGAGATT-GG-AGC-TAAGAACACATTC-CCTTCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * **
23087 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * *
23148 CTTAAATAAGACAAACAAGAATTGCCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATT-CTA-G-TAATGCTCT
* * * * * *
23184 CCATTTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGAAG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
23248 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
23313 TGAGACAAACGAGGATTCTAGTATTGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
23343 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * * * * * * * **
23408 TCT-CTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-C
66 T-TGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * * * **
23467 ATAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
23502 CCATTCTTTTCAAGATT-GGGAGC-TAAGGACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCATAA--ACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
23564 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
23626 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
23661 CTATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
23725 CTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAAGTTCTTGTCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
23790 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
23820 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * * * ** * *
23885 TTTGTTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCATAATA-TCAAAATTCAT-CC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTTTGA-AA-AGTCAAAGTTCGTGCCTCA
* ** *** * *
23945 TAATTATGACATGCTTCGATTCTCGTTAGA-G-GCT
126 -AATGA-GACAAACGAGGATTCTAG-TA-ATGCTCT
* * * * * * * * *
23979 CCATGCTTTACGAGATT-GGGAGCTAAAAACACATTC-CCTTCATAAGGATACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCA-CCATAAACATATTCTCC-TCATAAGGATACACGATATTGATG
* * * ** *
24042 CTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTTTGT-CTCT
64 CTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-CT
* * * * *
24104 TAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 CAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
24138 CCATTCTTTTCATGATTAGGCACCAGAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
24202 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
24267 TGAGATAAAC---GATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** ** * * * * * *
24294 TCATTCTTTTTGGGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATG-C
** ** * * ** * * **
24359 TTTCTTTTC-CTTGGAAA-TCTTTTCTTTTCCCTTTTTTTGCTTAATA-TCAAAATTC-AACC-C
65 TTTGGTTTCGC-AAGAAAGGC-TTTCTTGTCCCAATTTTTG---AAAAGTCAAAGTTCGTGCCTC
* * * * * *
24419 ATAGTTATGACAAGC-ATCGATTCTCGTAA-GAGTCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
24454 CCATTCTTTTCGAGATT-GG-AGC-TAAGAACACATTC-CCTTCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * **
24515 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * *
24576 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
24612 CCATTTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGAAG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
24676 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
24741 TGAGACAAACGAGGATTCTAGTATTGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
24771 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * * * * * * * **
24836 TCT-CTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-C
66 T-TGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * * * **
24895 ATAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
24930 CCATTCTTTTCAAGATT-GGGAGC-TAAGGACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCATAA--ACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
24992 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
25054 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
25089 CTATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
25153 CTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAAGTTCTTGTCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
25218 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
25248 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * ** * * * * * * *
25313 TTTGTTTTGCATGGAAATCCTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* *** * *** * **
25375 ATTTTTACAAGCTTCGATTCTCGTAA-GAGGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * ** * *
25407 CCATTCCTTTCGAGATT-GGGAGC-TAAGAACACGTTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * **
25469 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTT--TGCCT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGCCT
* * * *
25530 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 C--AAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
25566 CTATTCTTTTCATGATTCGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * *
25630 CTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAAGTTCTTGTCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
25695 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * ***
25725 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAACGATATTCACAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * * *
25790 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCATCCCGT-
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TC
* ** * *** * **
25851 AATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
125 AAATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
25884 CCATTCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * **
25946 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTT--TGCCT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGCCT
* * * *
26007 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 C--AAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
26043 CTATTCTTTTCATGATTCGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * ** *
26107 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTTTAAGTTCATG-CTGCAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGT-CCCAATTTTTGAAAAGTCAAAGTTCGTGCCT-CAA
* * *
26171 ATGAGACAAACGAGGATTCTAGTCATGATGT
127 ATGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * ** * * *
26202 TCATTCTTTTTGTAATTACGG-GCTATAAACACAATCTCGTCATTAGGATAAATTATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * *
26266 TTTTCTTTTGCATGGAAA-TCTTTTCTT-TCCCTATTTTCCCT-AATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT---TGAAAAGTCAAAGTTCGTGCCTC
** * *** * *
26325 ATAATTTTGACAAGCTTCGATTCTCGTTAGA-G-GCT
125 A-AA-TGAGACAAACGAGGATTCTAG-TA-ATGCTCT
* * * * * * * * * *
26360 CCATGCTTTACGAGATT-GGGAGC-TAAGAACACATTC-CCTTCACAAGGATAGATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** *
26422 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
26484 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
26519 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
26583 CTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAAGTTCTTGTCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
26648 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
26678 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * ** * * * * * * *
26743 TTTGTTTTGCATGGAAATCCTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * **
26805 ATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
26837 CCATTCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * **
26899 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTT--TGCCT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGCCT
* * * *
26960 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 C--AAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
26996 CTATTCTTTTCATGATTCGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * *
27060 CTTTGGTTTCGTAAGAAAGGCTTTCTTGACACCAATTTTTGTATAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
27125 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * *
27155 TCATTCTTTTTGTGATTAGGCACTATAAACACT-TTCTCCTCATTAGGATAAACGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACA-TATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * *
27219 TTTTCTTTTGCAAGGAAA-TCTTTTCTTTTCCC-TTTTTTCCATAATA-TCAAAATTCATGCCGT
65 TTTGGTTTCGCAA-GAAAGGC-TTTCTTGTCCCAATTTTT-GA-AA-AGTCAAAGTTCGTGCC-T
* ** * *** * **
27281 -AATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
124 CAAATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * * *
27314 CCATGCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGTT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
27376 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCTTTTTTTATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
27438 TTAAATAAGACAAACAAGAATTGTCAAGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-TCTAG-TAATGCTCT
* * * * * *
27473 CAATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
** * * * * *
27537 CTTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCGCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
** * *
27602 TGAGACAAACGAGGATTCTAGCCATGATGT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * ** *
27632 TCATTCTTTTTGTGATTACGG-GCTATAAACACAATCTCGTCATTAGGATAAATTATATTCACT-
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGA-TG
* ** * * * * ** * *
27695 ATTTTCTTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCATAATA-TCAAAATTCAT-CC-
64 CTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTTTGA-AA-AGTCAAAGTTCGTGCCT
* ** *** * *
27755 CATAATTATGACATGCTTCGATTCTCGTTAGA-G-GCT
124 CA-AATGA-GACAAACGAGGATTCTAG-TA-ATGCTCT
* * * * * * * * *
27791 CCATGCTTTACGAGATT-GGGAGCTAAAAACACATTC-CCTTCATAAGGATACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCA-CCATAAACATATTCTCC-TCATAAGGATACACGATATTGATG
* * * ** *
27854 CTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTTTGT-CTCT
64 CTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-CT
* * * * *
27916 TAAATAAGACAAAC-AAGAAT-T-GTCATGCTAATCT
124 CAAATGAGACAAACGAGGATTCTAGTAATGC---TCT
* * * * * *
27950 CCATTCTTTTCATGATTAGGCACCAGAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
28014 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
28079 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
28109 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * * *
28174 TTTCTTTTGCATGGAAATCCTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * **
28236 ATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
28268 CCATTCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * **
28330 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTT--TGCCT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGCCT
* * * *
28391 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 C--AAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
28427 CTATTCTTTTCATGATTCGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * *
28491 CTTTGGTTTCGTAAGAAAGGCTTTCTTGACACCAATTTTTGTATAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
28556 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * *
28586 TCATTCTTTTTGTGATTAGGCACTATAAACACT-TTCTCCTCATTAGGATAAACGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACA-TATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * *
28650 TTTTCTTTTGCAAGGAAA-TCTTTTCTTTTCCC-TTTTTTCCATAATA-TCAAAATTCATGCCGT
65 TTTGGTTTCGCAA-GAAAGGC-TTTCTTGTCCCAATTTTT-GA-AA-AGTCAAAGTTCGTGCC-T
* ** * *** * **
28712 -AATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
124 CAAATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * * *
28745 CCATGCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGTT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
28807 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCTTTTTTTATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
28869 TTAAATAAGACAAACAAGAATTGTCAAGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-TCTAG-TAATGCTCT
* * * * * *
28904 CAATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
** * * * * *
28968 CTTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCGCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
** * *
29033 TGAGACAAACGAGGATTCTAGCCATGATGT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * ** *
29063 TCATTCTTTTTGTGATTACGG-GCTATAAACACAATCTCGTCATTAGGATAAATTATATTCACT-
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGA-TG
* ** * * * * ** * *
29126 ATTTTCTTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCATAATA-TCAAAATTCAT-CC-
64 CTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTTTGA-AA-AGTCAAAGTTCGTGCCT
* ** *** * *
29186 CATAATTATGACATGCTTCGATTCTCGTTAGA-G-GCT
124 CA-AATGA-GACAAACGAGGATTCTAG-TA-ATGCTCT
* * * * * * * * * * *
29222 CCATGCTTTACGAGATT-GGGAGCTAAAAACACATTCACTTCATAAGGATACATGACATTGATGC
1 CCATTCTTTTCGTGATTAGGCA-CCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
* * * ** * *
29286 TTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTTTGT-CTCTT
65 TTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-CTC
* * * *
29348 AAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
125 AAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
29381 CCATTCTTTTCATGATTAGGCACCAGAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
29445 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
29510 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
29540 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * * *
29605 TTTCTTTTGCATGGAAATCCTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * **
29667 ATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
29699 CCATTCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * **
29761 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTT--TGCCT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGCCT
* * * *
29822 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 C--AAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
29858 CTATTCTTTTCATGATTCGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * *
29922 CTTTGGTTTCGTAAGAAAGGCTTTCTTGACACCAATTTTTGTATAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
29987 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * *
30017 TCATTCTTTTTGTGATTAGGCACTATAAACACT-TTCTCCTCATTAGGATAAACGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACA-TATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * *
30081 TTTTCTTTTGCAAGGAAA-TCTTTTCTTTTCCC-TTTTTTCCATAATA-TCAAAATTCATGCCGT
65 TTTGGTTTCGCAA-GAAAGGC-TTTCTTGTCCCAATTTTT-GA-AA-AGTCAAAGTTCGTGCC-T
* ** * *** * **
30143 -AATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
124 CAAATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * * *
30176 CCATGCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGTT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
30238 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCTTTTTTTATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * ** * *
30300 TTAAATAAGACAAATAAGAATTGTCAAGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-TCTAG-TAATGCTCT
* * * * * *
30335 CAATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
** * * * * *
30399 CTTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCGCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
** * *
30464 TGAGACAAACGAGGATTCTAGCCATGATGT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * ** *
30494 TCATTCTTTTTGTGATTACGG-GCTATAAACACAATCTCGTCATTAGGATAAATTATATTCACT-
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGA-TG
* ** * * * * ** * *
30557 ATTTTCTTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCATAATA-TCAAAATTCAT-CC-
64 CTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTTTGA-AA-AGTCAAAGTTCGTGCCT
* ** *** * *
30617 CATAATTATGACATGCTTCGATTCTCGTTAGA-G-GCT
124 CA-AATGA-GACAAACGAGGATTCTAG-TA-ATGCTCT
* * * * * * * * *
30653 CCATGCTTTACGAGATT-GGGAGCTAAAAACACATTC-CCTTCATAAGGATACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCA-CCATAAACATATTCTCC-TCATAAGGATACACGATATTGATG
* * * ** *
30716 CTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTTTGT-CTCT
64 CTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-CT
* * * * *
30778 TAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 CAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
30812 CCATTCTTTTCATGATTAGGCACCAGAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
30876 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
30941 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
30971 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * ** * * * * * * *
31036 TTTGTTTTGCATGGAAATCCTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * **
31098 ATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
31130 CCATTCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
*** * * ** *
31192 GCTTTGGGGCCGCAAGAAAATGTTTTCTT-TCCGCCGTTTTTTATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* ** * * *
31253 CTTAAAAAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
31289 CCATTCTTTTCATGATTCGGCGCCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * *
31353 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTATAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
31418 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
31448 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** ** *
31513 TTTCTTTTGCAAGGAAA-TCTTTTCTTTTCCC-TTTTTTCCTTAATTTCAAA-TTCAT-CC-CAC
66 TTGGTTTCGCAA-GAAAGGC-TTTCTTGTCCCAATTTTT--GAAAAGTCAAAGTTCGTGCCTCA-
* * * *** * **
31573 AGTTATGACAAGCTTTGATTCTCGTAA-GAGACT
126 AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * ** *
31606 CCATGCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACGTGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** * *
31668 GCTTTGGTGTCACAAGAAAATGTTTTCTT-TCCACCGTTTTCGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * *
31730 TTAAATAAGACATAC-AAGAATC-A-TCATGCTACT
123 TCAAATGAGACAAACGAGGATTCTAGTAATGCT-CT
* * * *
31763 CCTCATTCCTTTCCTGGTTAGGCACCATAAAC-T-TTCTCTTCTCATAAGCATACACGATATTGA
1 -C-CATTCTTTTCGTGATTAGGCACCATAAACATATTCTC--CTCATAAGGATACACGATATTGA
* * ** * * * *
31826 TTCTTTCGTTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
62 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCA
*
31891 AATGAGATAAAC---GATTCTAGTAAT-CATCT
126 AATGAGACAAACGAGGATTCTAGTAATGC-TCT
* * ** ** * * * * * * *
31920 TCATTCTTTTTGTGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAATGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * ** * * ** * * * **
31985 TTTCTTTTGCTTGGAAA-TCTTTTCTTTTCCCTTTTTTCCTTAATA-TCAAAATTC-AACC-CAT
66 TTGGTTTCGC-AAGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA-
* * * * * * * *
32046 AGTTATGACGAGC-ATCGATTCTCGTAA-GAGTGT
126 AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
32079 CCATTCTATTCGAGATT-GG-AGC-TAAGAACACATTC-CCATCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
32140 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
32202 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
32237 CCATTTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGAGG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
32301 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
32366 TGAGAAAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * ** * * * * *
32396 TCATTCTTTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAACGATATTCATGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * ** **
32461 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC--AACAAA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
32521 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
32555 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
32617 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
32679 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
32714 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTAATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
32778 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATGAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
32843 TGAGAAAAACAAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
32873 TCATTCTTTTTGTGAATAGGCACTATAAACACATTCTCCTCATTAGGATAGACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * ** **
32938 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC--AACAAA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
32998 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * * *
33032 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCGTAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * * *
33094 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * ** *
33156 TTAAATAAGACAAACAAAAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
33191 CCATTCTTTTCATGATTAGGCACCATAAAC-T-TTGTCATCTAATAAGTATACATGATTATTGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTC--CTCATAAGGATACACGA-TATTGAT
* * * * *
33254 GCTTTGGTTTCGTAAGGAAGGCTTTCTTGTCACCAATTTTTGTACAGTCTAAGTTCGTGCCTCAA
63 GCTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAA
*
33319 ATGAGACAAATGAGGATTCTAGTAATGCTCT
127 ATGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
33350 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * *
33415 TTTCTTTTGCATGGAAATCCTTTCTT-TACGCTAGTTTCCTT-AATA-TCAAAATTCAT-CCTGT
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGT-C-CCAATTT--TTGAAAAGTCAAAGTTCGTGCCT-C
* ** * *** ** **
33476 AATTTTGACAAGCTTCGATTCCCGTAA-GAGGCT
125 AAATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
33509 CCATGCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * *
33571 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTATTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * *
33633 TTAAATAAGACAAAC-AAGAAT-T-GTCATGCTAAT
123 TCAAATGAGACAAACGAGGATTCTAGTAATGCT-CT
* * * * *
33666 CCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTAATAAGTATA-ACGATTATTGAT
1 -CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGAT
* * * * *
33729 GCTTTGGTTTTGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAA
63 GCTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAA
* * *
33794 ATGAGAAAAACAAGGATTCTAGTAATGATCT
127 ATGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
33825 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * ** **
33890 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC--AACAAA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
33950 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
33984 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
34046 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
34108 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
34143 CCATTCTTTTCATGATTAGGCACCATAAA-GTTTGTCTTCTAATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
34207 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
34272 TGAGTCAAATGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
34302 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * *
34367 TTTCTTTTGCATGGAAATCCTTTCTT-TACGCTAGTTTCCTT-AATA-TCAAAATTCAT-CCTGT
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGT-C-CCAATTT--TTGAAAAGTCAAAGTTCGTGCCT-C
* ** * *** ** **
34428 AATTTTGACAAGCTTCGATTCCCGTAA-GAGGCT
125 AAATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
34461 CCATGCCTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** *
34523 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCGTTTTTTATAGAAGTC-AAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * *
34584 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
34620 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACA-CGATATTGATG
* * * * *
34684 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATCTTAGTAAAGTCTAAGTTCGTGCCTC-AA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
34748 TGAGGCAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * * *
34778 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGAGATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * *
34843 TTTCTTTTGCATGGAAA-TCTTTTCTT-TGCCTC-ATTTTCCTTAATA-TTAAAATTCAT-CC-C
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CC-CAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* ***** * * *
34902 ATAATTATGACAAGTTTCGATTCTCGTAAAAG-GCT
125 A-AATGA-GACAAACGAGGATTCTAGT-AATGCTCT
** * * * * * * *
34937 CCACGCTTTTCGAGATTTGG-AGC-TAAGAACACATTC-CCTTCATAAGGCTACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
34999 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCATTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
35061 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
35096 CCATTCCTTTCATGATTAGGCACTATAAAC-TTTGTCTCCTCATAGGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * ** * *
35160 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCCCCAATTTTTGTAAAGTCTAAGTTTATACCGCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGT-CCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * * *
35225 GTGACAAACGAGGATTCTAGTCATGATGT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * ** * * * * * *
35254 TCATTCTTTTTGTAATTATGG-GCTATAACCACAATCTTGTCATTAGGATAAATGATATTCAAGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
35318 TTTTTTTTTGCATGGAAA-TCATTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* ** *** * **
35378 ATAATTATGACATGCTTCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * * *
35413 CCATGCTTTACGAGATT-GGGAGCAAAGAACACATTC-CCTTCATAAGGATACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATA-AACATATTCTCC-TCATAAGGATACACGATATTGATG
* * * ** * *
35476 CTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTTATAGAAGT-AAAGTT--TGTCTC
64 CTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGCCTC
* * * * *
35537 ATAAATAAGATAAACAAGAATTGTCATGCTAAT-C-C-
125 --AAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
35572 CCATTCTTTTCATTATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACAGGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
35636 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
35701 TGAGACAAACGAGGATTCCAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * ***
35731 TCATTCTTTTTGTGATTAGGAACTATAAACACACTCTCCTTATTAGGATAAACGATATTCACAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * * *
35796 TTTCTTTTGCATGGAAATCCTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCATCCCGT-A
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * **
35858 ATTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
35890 CCATGCCTTTCGAGATTCGG-AGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
** * * ** *
35952 GCTTTGGTGGCGCAAGAAAATGTTTTCTT-TCCGCCGTTTTTTATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * * *
36013 ATTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
36049 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * * * *
36113 CTTTGGTTTCGTAAGAAAGGCTTTATTGTCACCAATTTTTGTATAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* **
36178 TGAGACAAACGAGGATTCTAGTATTAATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
36208 TCATTCTTTTTGCGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** * * * ***
36273 TTTCTTTTGCACGGAAA-TCTTTTCTTTTCCCTTTTTTCCTTAATA-TCAAAATTCAACCCGT-A
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* ** * *** * *
36335 ATTTTGACAAGCTTCGATTCTCGTAA-GACGCT
126 AATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
36367 CCATGCCTTTCGAGATTCGG-AGC-TAAGAACATATTAC-CTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATT-CTCCTCATAAGGATACACGATATTGAT
* * * * *
36429 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCATTTTTTATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * *
36490 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
36526 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* *
36590 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
36655 TGAGACAAACGAGGATTCTAGTAATGCTCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * ***
36685 TCATTCTTTTTGTGATTAGGCACTATAAACACACTCTCCTTATTAGGATAAACGATATTCACAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * *
36750 TTTCTTTTGCATGGAAATCCTTTCTTGAT-GCTATTTTCCTTAATA-TCAAAATTCAT--CT-AG
66 TTGGTTTCGCA-AGAAAGGCTTTCTTG-TCCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA-
** * *** * * *
36810 TAATTTTGACAAGCTTCGCTTCTCGTAAGTG-GCT
126 -AA-TGAGACAAACGAGGATTCTAGTAA-TGCTCT
* * * * * * * *
36844 CCATGCCTTTCGAGATTCGG-AGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * *
36906 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTTCGCC-GTTTTTTATAGAAGT-AAAGTTTC-TCCC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTC-CCAATTTTTGA-A-AAGTCAAAG-TTCGTGCC
* * * * * *
36968 TTAAATAAAACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
37003 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATATTGTTTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* ** * * * *
37067 TTTCGTTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * *
37132 AAGATAAAC---GATTCTAGTAATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * ** ** * * * * * *
37158 TCATTCTTTTTGTGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * ** * ** * * **
37223 TTTCTTTTGCTTGGAAA-TCTTTTCCTT-TCCCTTTTTTTGCTTAATA-TCAAAATTC-AACC-C
66 TTGGTTTCGC-AAGAAAGGC-TTT-CTTGTCCCAATTTTTG---AAAAGTCAAAGTTCGTGCCTC
* * * * * *
37283 ATAGTTATGACAAGC-ATCGATTCTCGTAA-GAGTCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
37318 CCACTCTTTTCGAGATT-GG-AGC-TAAGAACACATTC-CCTTCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
37379 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
37441 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
37476 CCATTTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
37540 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
37605 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
37635 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
37700 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
37760 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * * *
37794 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATAAAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * * *
37856 GCTTTTGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
37918 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * **
37953 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACTTGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * * *
38017 CTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * * *
38082 TGAGACAAATGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* ** * * * * * * *
38112 TCATTCTTTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
38177 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
38237 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
38271 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
38333 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
38395 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * **
38430 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACTTGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * * *
38494 CTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * * *
38559 TGAGACAAATGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* ** * * * * * * *
38589 TCATTCTTTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
38654 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
38714 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
38748 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * * *
38810 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTGCC-GTTTTTTATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
38872 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * *
38907 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACACGGTTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACAC-GATATTGATG
* * *
38971 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTATAGTCAAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
39036 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
39066 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * ***
39131 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCAACCCAT-
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TC
* **
39192 AAAT-ATGA-AAA-GCATTGATTCCT-GTAA-GAGGCT
125 AAATGA-GACAAACG-A-GGATT-CTAGTAATG-CTCT
** * * * * *
39225 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
39287 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
39349 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
39384 CTATTCTTTTCATGATTAGGCACCATAAACAT-TGTCTTCTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * ** * * ** **
39448 TTTGGTTTCGTAAGAAAGGTTTTCTTGTCCCCGTTTTTTGTAAAGTCTAAGTTTATGCGGCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGT-CCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* *
39513 GAGACAAACGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * ** * * * * * *
39542 TCATTCTTTTTGTAATTACGG-GCTATAAACACATTCTTGTCATTAGGATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
39606 TTTTATTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * ** **** * **
39666 ATAATTATAACATGCTTCAATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
39701 CCATGCTTTACGAGATT-GGGAGC-TAAGAACATATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * *
39763 GCTTTGGTTTCGCAAGAAAATGTTTTCTT-TCCCCAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * *
39825 TTAAATAAGACAAACAAGAATTGTCCT-GCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-T-CTAG-TAATGCTCT
* * * * *
39860 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * *
39924 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGGCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
39989 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
40019 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
40084 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
40144 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * * *
40178 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATAAAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * * *
40240 GCTTTTGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
40302 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * **
40337 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACTTGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * * *
40401 CTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAATGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * * *
40466 TGAGACAAATGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* ** * * * * * * *
40496 TCATTCTTTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
40561 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
40621 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
40655 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
40717 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
40779 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
40814 CTATTCTTTTCATGATTAGGCACCATAAACAT-TGTCTTCTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * ** * * ** **
40878 TTTGGTTTCGTAAGAAAGGTTTTCTTGTCCCCGTTTTTGTAAAGTCTAAGTTTATGCGGCAAATG
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTCCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAATG
* *
40943 AGACAAACGAGGATTCTAGTCATGATCT
130 AGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * ** * * * * * *
40971 TCATTCTTTTTGTAATTACGG-GCTATAAACACATTCTTGTCATTAGGATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTA-GGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
41035 TTTTATTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * ** **** * **
41095 ATAATTATAACATGCTTCAATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * *
41130 CCATGCTTTACGAGATT-GGGAGC-TAAGAACATATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * *
41192 GCTTTGGTTTCGCAAGAAAATGTTTTCTT-TCCCCAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * *
41254 TTAAATAAGACAAACAAGAATTGTCCT-GCTAAT-C-C-
123 TCAAATGAGACAAACGAGGA-T-T-CTAG-TAATGCTCT
* * * * *
41289 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * *
41353 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGAAAAGTCTAAGTTCGTGGCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
41418 TGAGACAAACGAGGATTCTAGTAATGCACT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * ***
41448 TCATTCTTTTTGTGATTAGGGACTATAAACACACTCTCCTTATTAGGATAAACGATATTCACAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * * * *
41513 TTTCTTTTGCATGGAAATCCTTTCTTGACGCTATTTTCCTTAATA-TCAAAATTCATCCCGT-AA
66 TTGGTTTCGCA-AGAAAGGCTTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCAA
* ** * *** * **
41576 TTTTGACAAGCTTCGATTCTCGTAA-GAGGCT
127 ATGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
41607 CCATGCCTTTCGAGATTCGG-AGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** *
41669 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCGCCGTTTTTTATAGAAGT-AAAGTTTC-T-CT
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAG-TTCGTGC-
* * * * *
41730 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
41766 CCATTCTTTTCATGATTAGGCACCATAAACTTTTTCTTCTCATAAGTATACACGGTTATTGATGC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACAC-GATATTGATGC
* * * * * * *
41831 TTTGGTTTCGTAAGAAAGGCTTTATTGCCACCAATTTTTGTATAGTCTAAGTTCGTGCCTTAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
*
41896 GAGACAAACGAGGATTCTAGTAATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * *
41925 TCATTCTTTTTGCGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** * * * *
41990 TTTCTTTTGCACGGAAA-TCTTTTCTTTTCCCTTTTTTCCTTAATA-TCAAAATTCAT-CC-CAC
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA-
* * *** * * *
42051 AATTATGACAAGCTTCGATTCTCGTAAAAG-ACT
126 AATGA-GACAAACGAGGATTCTAGT-AATGCTCT
* ** * * * ** *
42084 CCATGCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACGTGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
42146 GCTTTGGTGTTAG-AAGAAAATGTTTTCTT-TCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-C
63 GCTTTGGT-TTCGCAAG-AAAGGCTTTCTTGTC--CCAATTTTTGA-A-AAGTCAAAGTTCGTGC
* * * * * * ** * *
42206 TCTTAAATAAGACAGAC-AAGAATCATCGTGCTACTCC
122 -CTCAAATGAGACAAACGAGGATTC-TAGTAATGCTCT
* * *
42243 CCATTCTTTTCCTGATTAGGCACCTTAAAC-T-TTCTCTTCTCATAAGGATACACGATATTGATT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTC--CTCATAAGGATACACGATATTGATG
** ** * * * *
42306 CTTTCATTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
42371 TGAGATAAAC---GATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** ** * * * * * * *
42398 TCATTCTTTTTGGGATTAGGCAATATAAACACGTTCACCTCATTAGGATAAACAATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATG-C
** ** * * ** * * **
42463 TTTCTTTTC-CTTGGAAA-TCTTTTCTTTTCCCTTTTTTTGCTTAATA-TCAAAATTC-AACC-C
65 TTTGGTTTCGC-AAGAAAGGC-TTTCTTGTCCCAATTTTTG---AAAAGTCAAAGTTCGTGCCTC
* * * * * *
42523 ATAGTTATGACAAGC-ATCGATTCTCGTAA-GAGTCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
42558 CCATTCTTTTCGAGATT-GG-AGC-TAAGAACACATTC-CCTTCATTAGAATACATGATATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
42619 GCTTTGGTGTCGCGAGAAAATGTTTTCTT-TCCACTGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
42681 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-CT
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * * *
42717 -TATTTTTTTCATGATTAGGCACCATAAAC-TTTATCTTCTCATAAGTATACACGATTATTGAAG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * *
42780 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
42845 TGAGACAAATGAGGATTCTAGTATTGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
42875 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
* * * * * * * * * **
42940 TCT-CTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-C
66 T-TGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * * * **
42999 ATAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
43034 CCATTCTTTTCAAGATT-GGGAGC-TAAGGACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCATAA--ACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
43096 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
43158 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * **
43193 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACTTGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * *
43257 CTTTGGTTTCTTAAGAAAGGCTTTCTTGTCACCTATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
43322 TGAGACAAACGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
43352 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
43417 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
43477 TAATTATGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
** * * * * *
43511 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACAAGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
43573 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
43635 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* ** * * * * * *
43670 CTATTCTTTTCAAGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGTATACATGATTATTAAAG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * *
43734 CTTTGGTTTCTTAAGACAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
43799 TGAGACAAACGAGGATTCTAGTCATGATTT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
43829 TCATTCTTTTTGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * ** * * * * * ***
43894 TTTTTTTTGCATGAAAATCTTTTCTT-TACGCTATTTTCCTTAATA-TCAAAATTCAACCCAT-A
66 TTGGTTTCGCAAGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCC-TCA
* **
43956 AAT-ATGA-AAA-GCATTGATTCCT-GTAA-GAGGCT
126 AATGA-GACAAACG-A-GGATT-CTAGTAATG-CTCT
** * * * * *
43988 CCATTCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
44050 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* ** * *
44112 TTC-AATAAGACAAATAAGAATTGTCATGCTAAT-C-C-
123 -TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
44147 CCATTCTTTTCATGATTAGGCACCATAAACAT-TGTCTTCTCATAAGGATACACTATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * *
44211 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAAATTTC-TGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTC-AAAGTTCGTGCCTCAAA
*
44275 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
** * * * * * * * * * *
44305 TTATTCTTTTTGCGATTAGGCACTATAAACACAATCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** * * * *
44370 TTTCTTTTGCATGGAAA-TCTTTTCTTTTCCCTTTTTTCCTTAATA-TCAAAATTCAT-CC-CAT
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA-
* * *** * **
44431 AATTATGACAAGCTTCGATTCTCGTAA-GAGACT
126 AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * ** *
44464 CCATGCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACGTGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** * *
44526 GCTTTGGTGTCACAAGAAAATGTTTTCTT-TCCACCGTTTTTTATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * *
44588 TTAAATAAGACAGAC-AAGAATC--GTCATGCTACT
123 TCAAATGAGACAAACGAGGATTCTAGTAATGCT-CT
*
44621 CCCCATTCTTTTCCTGATTAGGCACCATAAAC-T-TTCTCTTCTCATAAGGATACACGATATTGA
1 --CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTC--CTCATAAGGATACACGATATTGA
* * ** * * * * *
44684 TTCTTTCGTTTCGTTAGAAAGGCTTTCTTGTCACTAATTTTTGTAAAGTCTAAGTTTGAGCCTCA
62 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCA
* * *
44749 AATGAGACGAACGAGGATTCTAGTCATGATCT
126 AATGAGACAAACGAGGATTCTAGTAATGCTCT
* * ** * * * * * * * * * *
44781 TCATTCTTTTTGTGATTAGGGGCTATAAACACATTCTCGTCTTTAGGATAAATGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * *
44846 TTTTTTTTGCATGGAAA-TCTTGT-TTTTGCCCTATTATCCTT-AATA-TCAAAATTCAT-CC-C
66 TTGGTTTCGCA-AGAAAGGCTT-TCTTGT-CCCAATT-T--TTGAAAAGTCAAAGTTCGTGCCTC
* * *** * **
44905 ATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
44940 CCATGCTTTCCGAGATT-GGGAGC-TAAGGACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCATAA--ACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
45002 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* ** * *
45064 TTC-AATAAGACAAATAAGAATTGTCAAGCTAAT-C-C-
123 -TCAAATGAGACAAACGAGGA-T-TCTAG-TAATGCTCT
* * ** *
45099 CCGTTCTTTTCATGATTAGGCACCATAAACAT-TGTCTTGTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
45163 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCACTAAATTTTGTAAAGTCTAAATTTC-TGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTC-AAAGTTCGTGCCTCAAA
*
45227 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
** * * * * * * * * * *
45257 TTATTCTTTTTGCGATTAGGCACTATAAACACAATCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** * * * *
45322 TTTCTTTTGCATGGAAA-TCTTTTCTTTTCCCTTTTTTCCTTAATA-TCAAAATTCAT-CC-CAC
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA-
* * *** * **
45383 AATTATGACAAGCTTCGATTCTCGTAA-GAGACT
126 AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * ** *
45416 CCATGCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CTTTCATAAGGATACGTGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTC-CTCATAAGGATACACGATATTGAT
* * * * ** *
45478 GCTTTGGTGTCACAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * *
45540 TTAAATAAGACAGAC-AAGAATC--GTCATGCTACT
123 TCAAATGAGACAAACGAGGATTCTAGTAATGCT-CT
* * * * * *
45573 CCCCATTCTTTTCATGATTAGGCACCTTAAACAT-TGTGTTCTCATAAGTATACACGATTATTGT
1 --CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGA
* * * *
45637 TGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCA
62 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCA
*
45702 AATGAGACAAACGAGGATTCTAGTAATGATCT
126 AATGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
45734 TCATTGTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * * **
45799 TTTCTTTTGCATGGAAA-TCTTTTCTT-TACACTATTTTCCTTAATA-TCAAAATTC-AACC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * * * **
45859 TAATTATGACAAGC-ATCGATTCTTGTAA-GAGGCT
126 -AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
45893 CCATTCTTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * * *
45955 GCTTTGGTGTCACAAGAAAATGTTTTCTTCCTACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTT-GTCCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * ** * *
46017 TTAAATAAGACAAATAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
46052 CCATTCTTTTCATGATTAGGCACAATAAACAT-TGTCTTCTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
46116 TTTGGTTTCGTAAGAAAGGCTTTATTGTCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* *
46181 GAGACAAACGAGGATTCTAGTAAAGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
** * ** * * * * *
46210 TTATTCTTTTTGTGATTAGGCACCATAAACACGTTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * * * *
46275 TTTCTTTTGCATGGAAA-TCTTTTCTT-TGCCCTATTTTCCTTAATA-TCAAAATTCAT-CC-CA
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTCA
* * ***** * **
46335 TAATTGTGACTAGTTTCGATTCTCGTAA-GAGGCT
126 -AA-TGAGACAAACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
46369 CCATGCTTTTTGGGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
46431 GCTTTGGTGTCGCTAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
46493 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
46528 CCATTCTTTCCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGAATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
46592 TCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTT-ATGAAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGA-AAAGTCAAAGTTCGTGCCTCAAA
* *
46656 TGAGACAAACAAGGATTCTAG-ACATGATCT
128 TGAGACAAACGAGGATTCTAGTA-ATGCTCT
* * * * * * * * * * *
46686 TCATTGTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * ** * * *
46751 TTTCTTTTGCATGGAAA-TCTTTTCTTTTCCC-TTTTTTCCTTAATGTCAAAATTCAT-CC-CAT
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTTT--GAAAAGTCAAAGTTCGTGCCTCA-
* * * * **
46812 AATTACGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
46845 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
46907 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAA-TTAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
46969 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
47004 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGAATACACAATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * * *
47068 TCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * *
47133 GAGACAAATGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** * * * * * *
47162 TCATTCTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAA-GATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATG-
* ** ** * * *
47226 TTTTCTTTTC-C----ACCG-TTT-TTG-----A----T-AGAAGT-AAAGTTTGT-CTCTTAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTCCCAATTTTTGAAAAGTCAAAGTTCGTGC-CTCAAA
* * * *
47272 TAAGACAAACAAGAATTGTCATGCTAAT-C-C-
128 TGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
47302 CCAATCTTTTCGTGATTAGGCGCCATAAAC-TTTGTCTTCTTATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
47366 CTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
47431 AGAGACAAACGAGGATTCTAGTCAA-GATCT
128 TGAGACAAACGAGGATTCTAGT-AATGCTCT
* * ** * * * * * * * * *
47461 TCATTCTTTTTGTGATTAGGGGCTATAAACACATTCTCCTCGTTAA-GATAAATGATTTTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTC-ATAAGGATACACGATATTGATGC
** * * * * * * * **
47525 TTTTCTTTTGCATGGAAA-TCTCTTCTT-TGCCCCATTTTCCTTAATA-TCAAAATTAAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGCT-TTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * *** * **
47585 ACAATTATGACAAGCTTCGATTGTCA-TAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCT-AGTAATG-CTCT
* * * * * * ** * * *
47620 CCTTTTTTTTTGAGATT-GGGAGC-TAAGAACGCATTC-CCTTCATAAGGATACATGACATTGAA
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
47682 GCTTCGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
47744 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
47779 CCATTCTTATCATGATTAGGCACCAT-AA-AT-TGTCTTCTCAAAAGAATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* ** * *
47841 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTCTAAAGCCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
47906 TGAGATAAACAAGGATTCTAGTCAA-GATCT
128 TGAGACAAACGAGGATTCTAGT-AATGCTCT
* * * * * * * * * * * * * *
47936 TCATTATTTTTGTGATTTGGGACTATAAACACATTCTCCTCGTTAA-GATAAATGATTTTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTC-ATAAGGATACACGATATTGATGC
** * * * * * * * *
48000 TTTTCTTTTGCATGGAAA-TCTCTTCTT-TGCCCCATTTTCCTTAATA-TCAAAATTCAT--CTC
65 TTTGGTTTCGCA-AGAAAGGCT-TTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * *** * **
48060 ATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * ** * * *
48095 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACGCATTC-CCTTCATAAGGATACATGACATTGAA
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
48157 GCTTCGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * * * *
48219 TTAGATAAGAAAAAC-AAGAAT-T-GTCATGCTATTCC
123 TCAAATGAGACAAACGAGGATTCTAGTAATGC---TCT
* * * * *
48254 CCATTCTTTTCATGATTGGGCACCAT-AA-AT-TGTCTTCTCAAAAGTATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
48316 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGCCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
48381 TGAGACAAACAAGGGTTCTAGTCAA-GATCT
128 TGAGACAAACGAGGATTCTAGT-AATGCTCT
* * * * * * * * * * * * *
48411 TCATTCTTTTTGTGATTTGGGACTATAAACACATTCTCCTCGTTAA-GATAAATGATTTTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTC-ATAAGGATACACGATATTGATGC
** * * * * * * * * **
48475 TTTTCTTTTGCATGGAAA-TCTCATCTT-TGCCCCATTTTCCTTAATA-TCAAAATTAAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGCT-TTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * *** * **
48535 ATAATTATGACAAGCTTCGATTGTCA-TAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCT-AGTAATG-CTCT
* * * * * * * * *
48570 CCATTTTTTTTGAGATTGGGAACTA-AGAACACATTC-CCTTCATAAGGATACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATA-AACATATTCTCC-TCATAAGGATACACGATATTGATG
** * * ** * *
48633 CTTTGGGGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGTAGT-AAAGTTTGT-CTCT
64 CTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-CT
* * * * *
48695 TAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 CAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
48729 CCATTCTTTTCATGGTTAGGCACCATAAAC-TTTGTCTTCTCATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
48793 CTTTGGTTTCGTAAGAAAGGCTTTCTTATCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
48858 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
48888 TCATTCCTTTT-GTGATTAGGGACTATAAACACATTCTCCTCATTAA-AATAAATGATATTCACG
1 CCATT-CTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATG
* ** * * * * * * *
48951 -TCT--TTT-GCGTGGAAA-TCTTTTCTT-TGCCCCATTTTCCTTAATA-TCAAAATTCATCCCT
64 CTTTGGTTTCGC-AAGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCT
* * ** *** * **
49009 -TAATTATGACACGCTTTGATTCTCGTAA-GAGGCT
124 CAAATGA-GACAAACGAGGATTCTAGTAATG-CTCT
** * * * * * *
49043 CCACGCTTTTCGAT-ATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGT
1 CCATTCTTTTCG-TGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGA
* * * * *
49104 TGCTTTGGTGTCGCAAGAAAATGTTTTCTT-T-CCATCGTTTTTGATAGAAGT-AAAGTTTGT-C
62 TGCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCCCA--ATTTTTGA-A-AAGTCAAAGTTCGTGC
* * * * *
49165 TCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 -CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
49202 CTATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTTATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
49266 CTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* ** * *
49331 TGAGGCAAACGAGGATTCTAGCCACGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * *
49361 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATT-G--AT
* * * * * * * *
49426 --TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTCCTT-AATA-TCAAAATTCAT--C
63 GCTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTT--TTGAAAAGTCAAAGTTCGTGCC
* * *** * **
49482 TCATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
123 TCA-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * * *
49519 CCATGCTTTTCGACATT-GGGAGC-TAAGAACACA-TCCCCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
49581 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * ** * *
49643 TTAAATAAGACAAAAAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
49678 CCATTCTTTTCATGATTAAGCACCATAAAC-TTTGTCTTCTCATAAGAATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
49742 TCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTT-ATGAAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGA-AAAGTCAAAGTTCGTGCCTCAAA
* *
49806 TGAGACAAACAAGGATTCTAG-ACATGATCT
128 TGAGACAAACGAGGATTCTAGTA-ATGCTCT
* * * * * * * * * * *
49836 TCATTGTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * ** * * *
49901 TTTCTTTTGCATGGAAA-TCTTTTCTTTTCCC-TTTTTTCCTTAATGTCAAAATTCAT-CC-CAT
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTTT--GAAAAGTCAAAGTTCGTGCCTCA-
* * * * **
49962 AATTACGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
49995 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
50057 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-T-CCACCGTTTTGATAGAA-TTAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCCCA-ATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
50118 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
50153 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGAATACACAATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * * *
50217 TCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * *
50282 GAGACAAATGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** * * * * * *
50311 TCATTCTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAA-GATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATG-
* ** ** * * *
50375 TTTTCTTTTC-C----ACCG-TTT-TTG-----A----T-AGAAGT-AAAGTTTGT-CTCTTAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTCCCAATTTTTGAAAAGTCAAAGTTCGTGC-CTCAAA
* * * *
50421 TAAGACAAACAAGAATTGTCATGCTAAT-C-C-
128 TGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
50451 CCAATCTTTTCGTGATTAGGCGCCATAAAC-TTTGTCTTCTTATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
50515 CTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
50580 AGAGACAAACGAGGATTCTAGTCAA-GATCT
128 TGAGACAAACGAGGATTCTAGT-AATGCTCT
* * ** * * * * * * * *
50610 TCATTCTTTTTGTGATTAGGGGCTATAAACACATTCTCCTCATTAA-GATAAATGATTTTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATGC
** * * * * * * * **
50674 TTTTCTTTTGCATGGAAA-TCTCTTCTT-TGCCCCATTTTCCTTAATA-TCAAAATTAAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGCT-TTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * *** * **
50734 ACAATTATGACAAGCTTCGATTGTCA-TAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCT-AGTAATG-CTCT
* * * * * ** * * *
50769 CCATTTTTTTTGAGATT-GGGAGC-TAAGAACGCATTC-CCTTCATAAGGATACATGACATTGAA
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
50831 GCTTCGGTGTCGCAAGAAAATGTTTTCTT-TCCCCCGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-CCCAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
50893 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
50928 CCATTCTTATCATGATTAGGCACCAT-AA-AT-TGTCTTCTCAAAAGAATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* ** * *
50990 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTCTAAAGCCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
51055 TGAGATAAACAAGGATTCTAGTCAA-GATCT
128 TGAGACAAACGAGGATTCTAGT-AATGCTCT
* * * * * * * * * * * * * *
51085 TCATTATTTTTGTGATTTGGGACTATAAACACATTCTCCTCGTTAA-GATAAATGATTTTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTC-ATAAGGATACACGATATTGATGC
** * * * * * * * **
51149 TTTTCTTTTGCATGGAAA-TCTCTTCTT-TGCCCCATTTTCCTTAATA-TCAAAATTAAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGCT-TTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * *** * * **
51209 ATAATTATGACAAGCTTCGATTGTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * ** * * *
51244 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACGCATTC-CCTTCATAAGGATACATGACATTGAA
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
51306 GCTTCGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * * * *
51368 TTAGATAAGAAAAAC-AAGAAT-T-GTCATGCTATTCC
123 TCAAATGAGACAAACGAGGATTCTAGTAATGC---TCT
* * * *
51403 CCATTCTTTTCATGGTTAGGCACCATAAAC-TTTGTCTTCTCATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
51467 CTTTGGTTTCGTAAGAAAGGCTTTCTTATCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
51532 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * * * ***
51562 TCATTATTTTTGTGATTTGGGACTATAAACACATTCTCCTCGTTAA-GATAAATGATTTTCACAA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTC-ATAAGGATACACGATATTGATGC
** * * * * * * * **
51626 TTTTCTTTTGCATGGAAA-TCTCTTCTT-TGCCCCATTTTCCTTAATA-TCAAAATTAAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGCT-TTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * *** * * **
51686 ATAATTATGACAAGCTTCGATTGTCGTAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* * * * ** * * *
51721 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACGCATTC-CCTTCATAAGGATACATGACATTGAA
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * ** *
51783 GCTTCGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * * * *
51845 TTAGATAAGAAAAAC-AAGAAT-T-GTCATGCTATTCC
123 TCAAATGAGACAAACGAGGATTCTAGTAATGC---TCT
* * * * *
51880 CCATTCTTTTCATGATTGGGCACCAT-AA-AT-TGTCTTCTCAAAAGTATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * *
51942 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGCCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * *
52007 TGAGACAAACAAGGGTTCTAGTCAA-GATCT
128 TGAGACAAACGAGGATTCTAGT-AATGCTCT
* * * * * * * * * * * * *
52037 TCATTCTTTTTGTGATTTGGGACTATAAACACATTCTCCTCGTTAA-GATAAATGATTTTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTC-ATAAGGATACACGATATTGATGC
** * * * * * * * * **
52101 TTTTCTTTTGCATGGAAA-TCTCATCTT-TGCCCCATTTTCCTTAATA-TCAAAATTAAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGCT-TTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * *** * **
52161 ATAATTATGACAAGCTTCGATTGTCA-TAA-GAGGCT
125 A-AATGA-GACAAACGAGGATTCT-AGTAATG-CTCT
* * * * * * * * *
52196 CCATTTTTTTTGAGATTGGGAACTA-AGAACACATTC-CCTTCATAAGGATACATGACATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATA-AACATATTCTCC-TCATAAGGATACACGATATTGATG
** * * ** * *
52259 CTTTGGGGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGTAGT-AAAGTTTGT-CTCT
64 CTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-CT
* * * * *
52321 TAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
124 CAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * *
52355 CCATTCTTTTCATGGTTAGGCACCATAAAC-TTTGTCTTCTCATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * * *
52419 CTTTGGTTTCGTAAGAAAGGCTTTCGTATCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* *
52484 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * *
52514 TCATTCCTTTT-GTGATTAGGGACTATAAACACATTCTCCTCATTAA-AATAAATGATATTCACG
1 CCATT-CTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATG
* ** * * * * * *
52577 -TCT--TTT-GCGTGGAAA-TCTTTTCTT-TGCCCCATTTTCCTTAATA-TCAAAATTCAT-CC-
64 CTTTGGTTTCGC-AAGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCT
* ** *** * **
52633 CATAATTATGACACGCTTTGATTCTCGTAA-GAGGCT
124 CA-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
** * * * * * *
52669 CCACGCTTTTCGAT-ATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGT
1 CCATTCTTTTCG-TGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGA
* * * ** *
52730 TGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAAGT-AAAGTTTGT-CT
62 TGCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-
* * * * *
52792 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
52828 CCAATCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTTATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
52892 CTTTGGATTCGTAAGAAAAGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* ** *
52957 TGAGGCAAACGAGGATTCTAGCCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * ***
52987 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * ** * * *
53052 TTTCTTTTGCAAGGAAA-TCTTTTCTTTTCCC-TTTTTTCCTTAATGTCAAAATTC-TTCC-CAT
66 TTGGTTTCGCAA-GAAAGGC-TTTCTTGTCCCAATTTTT--GAAAAGTCAAAGTTCGTGCCTCA-
* * * * **
53113 AATTACGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
53146 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * * * *
53208 GCTTTGG-TGCTGCAAGAAAATGTTTTCTT-TCCACCATTTTTTATAGAACT-AAAGTTTGT-CT
63 GCTTTGGTTTC-GCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-
* * * * * *
53269 CTTAAATAAGACAGACAAGAATTGTCATGGTAAT-C-C-
122 CTCAAATGAGACAAACGAGGA-T-TC-TAGTAATGCTCT
* * * * * *
53305 CCATTCTTTTCATGATTAGGCACCAGAAAC-TTTGTCTTCTCATAAGAATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * * *
53369 TTTTGGTTTCGTAAGAAAAGATTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* * * *
53434 TGAGACAAACAAGGATTCTAGTCACGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
53464 TCATTCTTTTTGTGATTAGGGACTC-TAAGCAGATTCTCCTCATTAGGATAAACGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCAC-CATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
** * * * * * * * *
53528 TTTTCTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTTCCTTAATA-TCAAAATTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* ** *** * **
53588 ATAATTATGACACGGCTTTGATTCTCGTAA-GAGGCT
125 A-AATGA-GACA-AACGAGGATTCTAGTAATG-CTCT
* * * * * * * *
53624 CCATGCTTTTCGAT-ATT-GGGAGC-TAAGAACACATTC-CCTTGATAAGGATACATGACATTGT
1 CCATTCTTTTCG-TGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGA
* * * * *
53685 TGCTTTGGTGTCGCAAGAAAATGTTTTCTT-T-CCATCGTTTTTGATAGAAGT-AAAGTTTGT-C
62 TGCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCCCA--ATTTTTGA-A-AAGTCAAAGTTCGTGC
* * * * *
53746 TCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
122 -CTCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
53783 CTATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTTATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
** * * * *
53847 CTTTGGTTTCATAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* ** * *
53912 TGAGGCAAACGAGGATTCTAGCCACGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * *
53942 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATT-G--AT
* * * * * * * *
54007 --TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTCCTT-AATA-TCAAAATTCAT--C
63 GCTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTT--TTGAAAAGTCAAAGTTCGTGCC
* * *** * **
54063 TCATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
123 TCA-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * *
54100 CCATGCTTTTCGACATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
54162 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * ** * *
54224 TTAAATAAGACAAAAAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
54259 CCATTCTTTTCATGATTAAGCACCATAAAC-TTTGTCTTCTCATAAGAATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
54323 TCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTT-ATGAAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGA-AAAGTCAAAGTTCGTGCCTCAAA
* *
54387 TGAGACAAACAAGGATTCTAG-ACATGATCT
128 TGAGACAAACGAGGATTCTAGTA-ATGCTCT
* * * * * * * * * * *
54417 TCATTGTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * ** * * *
54482 TTTCTTTTGCATGGAAA-TCTTTTCTTTTCCC-TTTTTTCCTTAATGTCAAAATTCAT-CC-CAT
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTTT--GAAAAGTCAAAGTTCGTGCCTCA-
* * * * **
54543 AATTACGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
54576 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
54638 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAA-TTAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
54700 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
54735 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGAATACACAATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * * *
54799 TCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * *
54864 GAGACAAATGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** * * * * * *
54893 TCATTCTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAA-GATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATG-
* ** ** * * *
54957 TTTTCTTTTC-C----ACCG-TTT-TTG-----A----T-AGAAGT-AAAGTTTGT-CTCTTAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTCCCAATTTTTGAAAAGTCAAAGTTCGTGC-CTCAAA
* * * *
55003 TAAGACAAACAAGAATTATCATGCTAAT-C-C-
128 TGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
55033 CCAATCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTTATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
55097 CTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* ** * *
55162 TGAGGCAAACGAGGATTCTAGCCACGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * *
55192 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATT-G--AT
* * * * * * * *
55257 --TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTCCTT-AATA-TCAAAATTCAT--C
63 GCTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTT--TTGAAAAGTCAAAGTTCGTGCC
* * *** * **
55313 TCATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
123 TCA-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * * *
55350 CCATGCTTTTCGACATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATCCATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
55412 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * * *
55474 TTAAATAAGACAAA-AAAGAAT-T-GTCATGCTAGTCC
123 TCAAATGAGACAAACGAGGATTCTAGTAATGC---TCT
* * * * * *
55509 CCATTCTTTTCATGATTAAGCACCATAAAC-TTTGTCTTCTCATAAGAATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
55573 TCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTT-ATGAAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGA-AAAGTCAAAGTTCGTGCCTCAAA
* *
55637 TGAGACAAACAAGGATTCTAG-ACATGATCT
128 TGAGACAAACGAGGATTCTAGTA-ATGCTCT
* * * * * * * *
55667 TCATTGTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATT-G--AT
* * * * * * * *
55732 --TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTCCTT-AATA-TCAAAATTCAT--C
63 GCTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTT--TTGAAAAGTCAAAGTTCGTGCC
* * *** * **
55788 TCATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
123 TCA-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * *
55825 CCATGCTTTTCGACATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
55887 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * ** * *
55949 TTAAATAAGACAAAAAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
55984 CCATTCTTTTCATGATTAAGCACCATAAAC-TTTGTCTTCTCATAAGAATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
56048 TCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTT-ATGAAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGA-AAAGTCAAAGTTCGTGCCTCAAA
* *
56112 TGAGACAAACAAGGATTCTAG-ACATGATCT
128 TGAGACAAACGAGGATTCTAGTA-ATGCTCT
* * * * * * * * * * *
56142 TCATTGTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * ** * * *
56207 TTTCTTTTGCATGGAAA-TCTTTTCTTTTCCC-TTTTTTCCTTAATGTCAAAATTCAT-CC-CAT
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTTT--GAAAAGTCAAAGTTCGTGCCTCA-
* * * * **
56268 AATTACGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
56301 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
56363 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAA-TTAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
56425 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
56460 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGAATACACAATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * * *
56524 TCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * *
56589 GAGACAAATGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** * * * * * *
56618 TCATTCTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAA-GATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATG-
* ** ** * * *
56682 TTTTCTTTTC-C----ACCG-TTT-TTG-----A----T-AGAAGT-AAAGTTTGT-CTCTTAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTCCCAATTTTTGAAAAGTCAAAGTTCGTGC-CTCAAA
* * * *
56728 TAAGACAAACAAGAATTATCATGCTAAT-C-C-
128 TGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
56758 CCAATCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTTATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
56822 CTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* ** * *
56887 TGAGGCAAACGAGGATTCTAGCCACGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * *
56917 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATT-G--AT
* * * * * * * *
56982 --TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTCCTT-AATA-TCAAAATTCAT--C
63 GCTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTT--TTGAAAAGTCAAAGTTCGTGCC
* * *** * **
57038 TCATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
123 TCA-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * * *
57075 CCATGCTTTTCGACATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATCCATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
57137 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * * *
57199 TTAAATAAGACAAA-AAAGAAT-T-GTCATGCTAGTCC
123 TCAAATGAGACAAACGAGGATTCTAGTAATGC---TCT
* * * * * *
57234 CCATTCTTTTCATGATTAAGCACCATAAAC-TTTGTCTTCTCATAAGAATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
57298 TCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTT-ATGAAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGA-AAAGTCAAAGTTCGTGCCTCAAA
* *
57362 TGAGACAAACAAGGATTCTAG-ACATGATCT
128 TGAGACAAACGAGGATTCTAGTA-ATGCTCT
* * * * * * * *
57392 TCATTGTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATT-G--AT
* * * * * * * *
57457 --TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTCCTT-AATA-TCAAAATTCAT--C
63 GCTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTT--TTGAAAAGTCAAAGTTCGTGCC
* * *** * **
57513 TCATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
123 TCA-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * *
57550 CCATGCTTTTCGACATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
57612 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * ** * *
57674 TTAAATAAGACAAAAAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
57709 CCATTCTTTTCATGATTAAGCACCATAAAC-TTTGTCTTCTCATAAGAATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
57773 TCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTT-ATGAAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGA-AAAGTCAAAGTTCGTGCCTCAAA
* *
57837 TGAGACAAACAAGGATTCTAG-ACATGATCT
128 TGAGACAAACGAGGATTCTAGTA-ATGCTCT
* * * * * * * * * * *
57867 TCATTGTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * ** * * *
57932 TTTCTTTTGCATGGAAA-TCTTTTCTTTTCCC-TTTTTTCCTTAATGTCAAAATTCAT-CC-CAT
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTTT--GAAAAGTCAAAGTTCGTGCCTCA-
* * * * **
57993 AATTACGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
58026 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
58088 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAA-TTAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
58150 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
58185 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGAATACACAATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * * *
58249 TCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * *
58314 GAGACAAATGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** * * * * * *
58343 TCATTCTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAA-GATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATG-
* ** ** * * *
58407 TTTTCTTTTC-C----ACCG-TTT-TTG-----A----T-AGAAGT-AAAGTTTGT-CTCTTAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTCCCAATTTTTGAAAAGTCAAAGTTCGTGC-CTCAAA
* * * *
58453 TAAGACAAACAAGAATTATCATGCTAAT-C-C-
128 TGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * *
58483 CCAATCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTTATAAGGATACACGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* * * * *
58547 CTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
* ** * *
58612 TGAGGCAAACGAGGATTCTAGCCACGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * *
58642 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATT-G--AT
* * * * * * * *
58707 --TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGCCCCATTTCCTT-AATA-TCAAAATTCAT--C
63 GCTTTGGTTTCGCA-AGAAAGGC-TTTCTTGT-CCCAATTT--TTGAAAAGTCAAAGTTCGTGCC
* * *** * **
58763 TCATAATTATGACAAGCTTCGATTCTCGTAA-GAGGCT
123 TCA-AATGA-GACAAACGAGGATTCTAGTAATG-CTCT
* ** * * * * * *
58800 CCATGCTTTTCGACATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATCCATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * * *
58862 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACAGTTTTTGATAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * * * *
58924 TTAAATAAGACAAA-AAAGAAT-T-GTCATGCTAGTCC
123 TCAAATGAGACAAACGAGGATTCTAGTAATGC---TCT
* * * * * *
58959 CCATTCTTTTCATGATTAAGCACCATAAAC-TTTGTCTTCTCATAAGAATACACGATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * *
59023 TCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTT-ATGAAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGA-AAAGTCAAAGTTCGTGCCTCAAA
* *
59087 TGAGACAAACAAGGATTCTAG-ACATGATCT
128 TGAGACAAACGAGGATTCTAGTA-ATGCTCT
* * * * * * * * * * * *
59117 TCATTGTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAGGATAAACAATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
** * * * * * ** * * *
59182 TTTCTTTTGCATGGAAA-TCTTTTCTTTTCCC-TTTTTTCCTTAATGTCAAAATTC-TTCC-CAT
66 TTGGTTTCGCA-AGAAAGGC-TTTCTTGTCCCAATTTTT--GAAAAGTCAAAGTTCGTGCCTCA-
* * * * **
59243 AATTACGACAAGC-ATCGATTCTCGTAA-GAGGCT
126 AATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * * *
59276 CCATGCTTTTCGAGATT-GGGAGC-TAAGAACACATTC-CCTTCATAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
59338 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAA-TTAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
59400 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
59435 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGAATACACAATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * * * *
59499 TCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAAT
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAAT
* * *
59564 GAGACAAATGAGGATTCTAGTCATGATCT
129 GAGACAAACGAGGATTCTAGTAATGCTCT
* * * ** * * * * * *
59593 TCATTCTTTTTGTGATTAGGGATTATAAACACATTCTCCTCATTAA-GATAAATGATATTCACGA
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCA-TAAGGATACACGATATTGATGC
** * * * ** * * *
59657 TTTTCTTTTGCATGGAAA-TCTTTCATTG-CCCCTTTTTCCTTAATA-TCAGAA-TTCAT-CC-C
65 TTTGGTTTCGCA-AGAAAGGCTTTC-TTGTCCCAATTTT--TGAAAAGTCA-AAGTTCGTGCCTC
* * *** * *
59716 ATAATTATGACAAGCTTCGATTCTCGTTAGA-G-GCT
125 A-AATGA-GACAAACGAGGATTCTAG-TA-ATGCTCT
* ** * * * * * *
59751 CCATGCTTTTCAAGATT-GGGAGC-TAAGAACACATTC-CCTTCGTAAGGATACATGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
59813 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTGATAGAA-TTAAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGTCC-CAATTTTTGA-A-AAGTCAAAGTTCGTGC-C
* * * * *
59875 TTAAATAAGACAAACAAGAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
59910 CCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGAATACACAATATTGATTC
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGATATTGATGC
* * * *
59974 TTTGGTTTCGTAAGAAAGGATTTCTTGTCACCAATTTTTGTAAAGTCTAAA-TTTGTGCCTCAAA
65 TTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTC-AAAGTTCGTGCCTCAAA
* *
60038 TGAGACAAACGAGGATTCTAGTCATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * * *
60068 TCATTCAATTT-GTGATTAGGGACTATAAACACATTCTCCTCTTTAGGATAAACGGTATTCATGA
1 CCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGC
* * * * * * ** * * * * *
60132 TTT-TTTGTTGCATGGAAA-TCTTTTCTTTTCACTTTTTTCCTTAATA-TCAAAATTCAT-CCCC
65 TTTGGTT-TCGCA-AGAAAGGC-TTTCTTGTCCCAATTTT--TGAAAAGTCAAAGTTCGTGCCTC
* * * * * ** **
60193 TAATTATGGCAAGC-ATCGATTCTCCT-ATGAGGCT
125 AAATGA-GACAAACGA-GGATTCTAGTAATG-CTCT
* * * * * *
60227 CCATTCTTTTCGAGATT-GGGA-GATAAGAACACATTC-CCTTCATAAGGGTACACGACATTGAT
1 CCATTCTTTTCGTGATTAGGCACCAT-A-AACATATTCTCC-TCATAAGGATACACGATATTGAT
* * * ** * *
60289 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTTGTAGAAGT-AAAGTTTGT-CTC
63 GCTTTGGTTTCGCAAG-AAAGGCTTTCTTGT-C-CCAATTTTTG-AAAAGTCAAAGTTCGTGC-C
* * * ** *
60351 TTAAATAAGACAAACAACAATTGTCATGCTAAT-C-C-
123 TCAAATGAGACAAACGAGGATTCT-A-G-TAATGCTCT
* * * * * *
60386 CCATTCTTTTCATGAATAGGCACCATAAAC-TTTGTCTTCTCAAAAGGATACATGATTATTGATG
1 CCATTCTTTTCGTGATTAGGCACCATAAACATAT-TCTCCTCATAAGGATACACGA-TATTGATG
* ** * *
60450 CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCTCCAATTTTTCTAAAGTCTAAGTTCTTGCCTCAAA
64 CTTTGGTTTCGCAAGAAAGGCTTTCTTGTC-CCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAA
*
60515 TGAGACAAACGAGGATTCTAGTAATGATCT
128 TGAGACAAACGAGGATTCTAGTAATGCTCT
* * * * * * * * * *
60545 TCATTCTTTTTGTGGTTAGGGACTAAAAACACATTCTCCTCATTAGGAGAAACGATATT
1 CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATT
60604 CACAATTTTC
Statistics
Matches: 36531, Mismatches: 12018, Indels: 8853
0.64 0.21 0.15
Matches are distributed among these distances:
139 25 0.00
140 345 0.01
141 60 0.00
142 10 0.00
143 15 0.00
145 10 0.00
146 20 0.00
147 15 0.00
152 22 0.00
153 35 0.00
154 93 0.00
155 680 0.02
156 721 0.02
157 1678 0.05
158 7794 0.21
159 20209 0.55
160 4044 0.11
161 492 0.01
162 261 0.01
163 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (157 bp):
CCATTCTTTTCGTGATTAGGCACCATAAACATATTCTCCTCATAAGGATACACGATATTGATGCT
TTGGTTTCGCAAGAAAGGCTTTCTTGTCCCAATTTTTGAAAAGTCAAAGTTCGTGCCTCAAATGA
GACAAACGAGGATTCTAGTAATGCTCT
Found at i:47478 original size:299 final size:298
Alignment explanation
Indices: 46929--47533 Score: 1023
Period size: 299 Copynumber: 2.0 Consensus size: 298
46919 CAAGAAAATG
*
46929 TTTTC-TTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
1 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
*
46993 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
66 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
* *
47058 ATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
131 ATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
* * * *
47123 TGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGATTAT
196 TGCCTCAAAAGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTAT
*
47188 AAACACATTCTTCTCATTAAGATAAATGATATTCACGA
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGA
47226 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
1 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
* * * *
47291 CATGCTAATCCCCAATCTTTTCGTGATTAGGCGCCATAAACTTTGTCTTCTTATAAGGATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-
* * *
47356 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAATTTTTGTAAAGTCTATGTTC
130 AATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTC
*
47421 GTGCCTCAAAAGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGGCTA
195 GTGCCTCAAAAGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
47486 TAAACACATTCTCCTCGTTAAGATAAATGATTTTCACGA
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGA
47525 TTTTCTTTT
1 TTTTCTTTT
47534 GCATGGAAAT
Statistics
Matches: 287, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
297 5 0.02
298 117 0.41
299 165 0.57
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (298 bp):
TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
ATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
TGCCTCAAAAGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTAT
AAACACATTCTCCTCATTAAGATAAATGATATTCACGA
Found at i:48130 original size:475 final size:476
Alignment explanation
Indices: 47226--50383 Score: 5085
Period size: 475 Copynumber: 6.6 Consensus size: 476
47216 ATATTCACGA
47226 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
1 TTTTC-TTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
* * * * *
47291 CATGCTAATCCCCAATCTTTTCGTGATTAGGCGCCATAAACTTTGTCTTCTTATAAGGATACACG
65 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGAATACACG
* *
47356 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAATTTTTGTAAAGTCTATGTTC
129 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* *
47421 GTGCCTCAAAAGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGGCTA
194 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
47486 TAAACACATTCTCCTCGTTAAGATAAATGATTTTCACGATTTTCTTTTGCATGGAAATCTCTTCT
259 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCT
* * * *
47551 TTGCCCCATTTTCCTTAATATCAAAATTAATCCCACAATTATGACAAGCTTCGATTGTCATAAGA
324 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* ** * *
47616 GGCTCCTTTTTTTTTGAGATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACATGACATTGA
389 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
47681 AGCTTCGGTGTCGCAAGAAAATG
454 TGCTTTGGTGTCGCAAGAAAATG
*
47704 TTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* *
47769 ATGCTAATCCCCATTCTTATCATGATTAGGCACCATAAA-TTGTCTTCTCAAAAGAATACACGAT
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTGTCTTCTCATAAGAATACACGAT
* *
47833 TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTCTAAAGCCTAAGTTCGT
131 TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * *
47898 GCCTCAAATGAGATAAACAAGGATTCTAGTCAAGATCTTCATTATTTTTGTGATTTGGGACTATA
196 GCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTATA
* *
47963 AACACATTCTCCTCGTTAAGATAAATGATTTTCACGATTTTCTTTTGCATGGAAATCTCTTCTTT
261 AACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTTT
*
48028 GCCCCATTTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGAGG
326 GCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGG
* *
48093 CTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACATGACATTGAAG
391 CTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATG
*
48158 CTTCGGTGTCGCAAGAAAATG
456 CTTTGGTGTCGCAAGAAAATG
* *
48179 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAGATAAGAAAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * * *
48244 ATGCTATTCCCCATTCTTTTCATGATTGGGCACCATAAA-TTGTCTTCTCAAAAGTATACACGAT
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTGTCTTCTCATAAGAATACACGAT
*
48308 TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGCCTAAGTTCGT
131 TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGT
* * *
48373 GCCTCAAATGAGACAAACAAGGGTTCTAGTCAAGATCTTCATTCTTTTTGTGATTTGGGACTATA
196 GCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTATA
* * *
48438 AACACATTCTCCTCGTTAAGATAAATGATTTTCACGATTTTCTTTTGCATGGAAATCTCATCTTT
261 AACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTTT
* * *
48503 GCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTGTCATAAGAGG
326 GCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGG
** * *
48568 CTCCATTTTTTTTGAGATTGGGAACTAAGAACACATTCCCTTCATAAGGATACATGACATTGATG
391 CTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATG
*
48633 CTTTGGGGTCGCAAGAAAATG
456 CTTTGGTGTCGCAAGAAAATG
*
48654 TTTTCTTTCCACCGTTTTTGATAGTAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* *
48719 ATGCTAATCCCCATTCTTTTCATGGTTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGAATACACGA
* *
48784 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTATCACCAATTTTTGTAAAGTCTAAGTTTG
130 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* *
48849 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCCTTTTGTGATTAGGGACTAT
195 TGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * *
48914 AAACACATTCTCCTCATTAAAATAAATGATATTCACG----TCTTTTGCGTGGAAATCTTTTCTT
260 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTT
* * *
48975 TGCCCCATTTTCCTTAATATCAAAATTCATCCCTTAATTATGACACGCTTTGATTCTCGTAAGAG
325 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* * *
49040 GCTCCACGCTTTTCGATATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGTT
390 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
49105 GCTTTGGTGTCGCAAGAAAATG
455 GCTTTGGTGTCGCAAGAAAATG
*
49127 TTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * *
49192 ATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGAATACACGA
* *
49257 TTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTCG
130 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
49322 TGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTAT
195 TGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * * *
49387 AAACACATTCTCCTCATTAGGATAAACGATATTCGCAATTTTCTTTTGCATGGAAATCTTTTCTT
260 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTT
*
49452 TGCCCCA-TTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGAG
325 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* *
49516 GCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATCCCCTTCATAAGGATACATGACATTGAT
390 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
49581 GCTTTGGTGTCGCAAGAAAATG
455 GCTTTGGTGTCGCAAGAAAATG
* *
49603 TTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
49668 ATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGAATACACGA
* * * * *
49733 -TATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCG
130 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
49797 TGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGAT
195 TGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * *
49862 AAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
260 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTT
* ** * * *
49927 TTCCCTTTTTTCCTTAATGTCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
325 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
49992 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
390 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
50057 GCTTTGGTGTCGCAAGAAAATG
455 GCTTTGGTGTCGCAAGAAAATG
*
50079 TTTTCTTTCCACCG-TTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
50143 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-A
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGAATACACGA
* * * * *
50207 ATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
130 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
50272 TGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGATTAT
195 TGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTAT
*
50337 AAACACATTCTTCTCATTAAGATAAATGATATTCACGATTTTCTTTT
260 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTT
50384 CCACCGTTTT
Statistics
Matches: 2509, Mismatches: 163, Indels: 19
0.93 0.06 0.01
Matches are distributed among these distances:
473 438 0.17
474 1 0.00
475 1353 0.54
476 410 0.16
477 302 0.12
478 5 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTGTCTTCTCATAAGAATACACGAT
TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGT
GCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTATA
AACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTTT
GCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGG
CTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAATG
Found at i:51684 original size:477 final size:477
Alignment explanation
Indices: 50375--60845 Score: 8139
Period size: 475 Copynumber: 22.1 Consensus size: 477
50365 ATATTCACGA
50375 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
1 TTTTC-TTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
* * * *
50440 CATGCTAATCCCCAATCTTTTCGTGATTAGGCGCCATAAACTTTGTCTTCTTATAAGGATACACG
65 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACG
* *
50505 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAATTTTTGTAAAGTCTATGTTC
130 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* * *
50570 GTGCCTCAAAAGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGGCTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
50635 TAAACACATTCTCCTCATTAAGATAAATGATTTTCACGATTTTCTTTTGCATGGAAATCTCTTCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * * *
50700 TTGCCCCATTTTCCTTAATATCAAAATTAATCCCACAATTATGACAAGCTTCGATTGTCATAAGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
** * *
50765 GGCTCCATTTTTTTTGAGATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACATGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
50830 AGCTTCGGTGTCGCAAGAAAATG
455 TGCTTTGGTGTCGCAAGAAAATG
*
50853 TTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * *
50918 ATGCTAATCCCCATTCTTATCATGATTAGGCACCATAAA--TTGTCTTCTCAAAAGAATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* *
50981 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTCTAAAGCCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
51046 TGCCTCAAATGAGATAAACAAGGATTCTAGTCAAGATCTTCATTATTTTTGTGATTTGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * *
51111 AAACACATTCTCCTCGTTAAGATAAATGATTTTCACGATTTTCTTTTGCATGGAAATCTCTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
51176 TGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTGTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* *
51241 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACATGACATTGAA
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
*
51306 GCTTCGGTGTCGCAAGAAAATG
456 GCTTTGGTGTCGCAAGAAAATG
* *
51328 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAGATAAGAAAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* *
51393 ATGCTATTCCCCATTCTTTTCATGGTTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* *
51458 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTATCACCAATTTTTGTAAAGTCTAAGTTTG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* *
51523 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTATTTTTGTGATTTGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * *
51588 AAACACATTCTCCTCGTTAAGATAAATGATTTTCACAATTTTCTTTTGCATGGAAATCTCTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
51653 TGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTGTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* *
51718 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACATGACATTGAA
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
*
51783 GCTTCGGTGTCGCAAGAAAATG
456 GCTTTGGTGTCGCAAGAAAATG
* *
51805 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAGATAAGAAAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * * *
51870 ATGCTATTCCCCATTCTTTTCATGATTGGGCACCATAAA--TTGTCTTCTCAAAAGTATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
*
51933 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGCCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
51998 TGCCTCAAATGAGACAAACAAGGGTTCTAGTCAAGATCTTCATTCTTTTTGTGATTTGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * **
52063 AAACACATTCTCCTCGTTAAGATAAATGATTTTCACGATTTTCTTTTGCATGGAAATCTCATCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* * *
52128 TGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTGTCATAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
** * *
52193 GCTCCATTTTTTTTGAGATTGGGAACTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
*
52258 GCTTTGGGGTCGCAAGAAAATG
456 GCTTTGGTGTCGCAAGAAAATG
*
52280 TTTTCTTTCCACCGTTTTTGATAGTAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
52345 ATGCTAATCCCCATTCTTTTCATGGTTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * *
52410 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCGTATCACCAATTTTTGTAAAGTCTAAGTTTG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
*
52475 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCCTTTTGTGATTAGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* *
52540 AAACACATTCTCCTCATTAAAATAAATGATATTCACG----TCTTTTGCGTGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
52601 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACACGCTTTGATTCTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* * *
52666 GCTCCACGCTTTTCGATATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGTT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
52731 GCTTTGGTGTCGCAAGAAAATG
456 GCTTTGGTGTCGCAAGAAAATG
52753 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* *
52818 ATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* *
52883 TTATTGATGCTTTGGATTCGTAAGAAAAGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* *
52948 TGCCTCAAATGAGGCAAACGAGGATTCTAGCCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * *
53013 AAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCAAGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * * *
53078 TTCCCTTTTTTCCTTAATGTCAAAATTCTTCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
53143 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
53208 GCTTTGGTG-CTGCAAGAAAATG
456 GCTTTGGTGTC-GCAAGAAAATG
* * * *
53230 TTTTCTTTCCACCATTTTTTATAGAACTAAAGTTTGTCTCTTAAATAAGACAGACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * * *
53295 ATGGTAATCCCCATTCTTTTCATGATTAGGCACCAGAAACTTTGTCTTCTCATAAGAATACATGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * *
53360 TTATTGATGTTTTGGTTTCGTAAGAAAAGATTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
53425 TGCCTCAAATGAGACAAACAAGGATTCTAGTCACGATCTTCATTCTTTTTGTGATTAGGGACTCT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * *
53490 AAGCAGATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
53555 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACACGGCTTTGATTCTCGTAAGA
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACA-AGCTTCGATTCTCGTAAGA
* * *
53620 GGCTCCATGCTTTTCGATATTGGGAGCTAAGAACACATTCCCTTGATAAGGATACATGACATTGT
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
53685 TGCTTTGGTGTCGCAAGAAAATG
455 TGCTTTGGTGTCGCAAGAAAATG
*
53708 TTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* *
53773 ATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * *
53838 TTATTGATGCTTTGGTTTCATAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
53903 TGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * *
53968 AAACACATTCTCCTCATTAGGATAAACGATATTCGCAATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
*
54033 TGCCCCA-TTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
*
54097 GCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
54162 GCTTTGGTGTCGCAAGAAAATG
456 GCTTTGGTGTCGCAAGAAAATG
* *
54184 TTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* *
54249 ATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * *
54314 -TATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
54378 TGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* *
54443 AAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * *
54508 TTCCCTTTTTTCCTTAATGTCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
54573 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
54638 GCTTTGGTGTCGCAAGAAAATG
456 GCTTTGGTGTCGCAAGAAAATG
*
54660 TTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
54725 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-A
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * *
54789 ATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* *
54854 TGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGATTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * ** **
54919 AAACACATTCTTCTCATTAAGATAAATGATATTCACGATTTTCTTTTCCACCG---T-TTTTGAT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* **** * ** * * * *
54980 AGAAGTAAAGTTTGTCTCTTAA-AT-AAGA--CAAACAAGAATTAT--CATGC-T--AATC-C--
326 TG--CCCCA-TTT-TC-CTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * * * * ** *
55033 ------C-CAAT-CTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTCTTCTTATAAGGATACAC
386 AAGAGGCTCCATGCTTTTCGA-GATT-GGGAGCTAAGAACACATTCCCTTC--ATAAGGATACAT
* * *
55086 GATTATTGATGCTTTGGTTTCGTAAGAAAA-G
447 GA-CATTGATGCTTTGGTGTCGCAAGAAAATG
* ** * * * * * * *
55117 CTTTCTTGT-CACCAAATTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGGCAAACGAGGAT
1 TTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAAT
* * ** ** * * ** * *
55178 TCT-A-GCCACGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACAT-TCTCCTCATTAGGA
62 TGTCATGCTA--ATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGA
* * * * * * * *
55240 TAAACGA-TATTCGCAAT--TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGC-CCCATTTCCT-T
124 TACACGATTATT-G--ATGCTTTGGTTTCGTA-AGAAAGGC-TTTCTTGT-CACCAATTT-TTGT
* * * * * *** * * * * *
55297 AATA-TCAAAATTCAT--CTCATAATTATGACAAGCTTCGATTCTCGT-AAGAGGCTCCATGCTT
182 AA-AGTCTAAGTTCGTGCCTCA-AATGA-GACAAACGAGGATTCTAGTCATGA-TCTTCATTCTT
* ** ** * * * * **
55358 TTCGACATT-GGGAGCTA-AGAACACATTC-CCTTCA-TAAGGATCCATGACATTGATGCTTTGG
243 TTTGTGATTAGGGA-CTATA-AACACATTCTCC-TCATTAA-GATAAATGATATTCACGATTTTC
* * * * * * *** * ** * * *
55419 TGTCGCAAGAAAATGTTTTCTTT-CCACAGTTTTTGATAGA-AGT-AAAGTTTGTCTCTTAAATA
304 TTTTGCATGGAAATCTTTTCTTTGCCCCA-TTTTCCTTA-ATA-TCAAAATTCATCCCATAATTA
* **** * * *** * * * * * *
55481 AGACAA-AAAAGAATTGTCATGCTAGTCCCCATTCTTTTC-ATGATT--AAGC-ACCATAA-ACT
366 TGACAAGCTTCG-ATTCTCGTAAGAGGCTCCATGCTTTTCGA-GATTGGGAGCTA--AGAACACA
* * * * * * * * * * *
55540 TTGTCTTCTCATAAGAATACACGATATTGATTCTCTAGTTTCGTAAG-AAAGG
427 TT-CCCT-TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * * * * * *
55592 CTTTCTTGT-CACCAATTTTT-AT-GAAGTCTAAGTTCGTGC-CTCAAATGAGACAAACAAGGAT
1 TTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAAT
* * ** * ** * * ** * *
55653 TCT-A-GACATGATCTTCATTGTTTTTGTGATTAGGGACTATAAACACAT-TCTCCTCATTAGGA
62 TGTCATG-C-TAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGA
* * * * * * * *
55715 TAAACGA-TATTCGCAAT--TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGC-CCCATTTCCT-T
124 TACACGATTATT-G--ATGCTTTGGTTTCGTA-AGAAAGGC-TTTCTTGT-CACCAATTT-TTGT
* * * * * *** * * * * *
55772 AATA-TCAAAATTCAT--CTCATAATTATGACAAGCTTCGATTCTCGT-AAGAGGCTCCATGCTT
182 AA-AGTCTAAGTTCGTGCCTCA-AATGA-GACAAACGAGGATTCTAGTCATGA-TCTTCATTCTT
* ** * * * * * **
55833 TTCGACATT-GGGAGCTA-AGAACACATTC-CCTTCA-TAAGGATACATGACATTGATGCTTTGG
243 TTTGTGATTAGGGA-CTATA-AACACATTCTCC-TCATTAA-GATAAATGATATTCACGATTTTC
* * * * * * *** * ** * * *
55894 TGTCGCAAGAAAATGTTTTCTTT-CCACAGTTTTTGATAGA-AGT-AAAGTTTGTCTCTTAAATA
304 TTTTGCATGGAAATCTTTTCTTTGCCCCA-TTTTCCTTA-ATA-TCAAAATTCATCCCATAATTA
* **** * * *** ** * * * * *
55956 AGACAA-AAAAGAATTGTCATGCTAATCCCCATTCTTTTC-ATGATT--AAGC-ACCATAA-ACT
366 TGACAAGCTTCG-ATTCTCGTAAGAGGCTCCATGCTTTTCGA-GATTGGGAGCTA--AGAACACA
* * * * * * * * * * *
56015 TTGTCTTCTCATAAGAATACACGATATTGATTCTCTAGTTTCGTAAG-AAAGG
427 TT-CCCT-TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * * * * * *
56067 CTTTCTTGT-CACCAATTTTT-AT-GAAGTCTAAGTTCGTGC-CTCAAATGAGACAAACAAGGAT
1 TTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAAT
* * ** * ** * * ** * *
56128 TCT-A-GACATGATCTTCATTGTTTTTGTGATTAGGGACGATAAACACAT-TCTCCTCATTAGGA
62 TGTCATG-C-TAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGA
* * * * ** * * * * * * * *
56190 TAAACGA-TATTCACGATTTTCTTTTGCATGGAAA-TCTTTTCTTTTC-CC-TTTTTTCCTTAAT
124 TACACGATTATTGATGCTTTGGTTTCGTA-AGAAAGGC-TTTCTTGTCACCAATTTTT--GTAAA
* * * * * * * * * * * *
56251 GTCAAAATTCAT-CC-CATAATTACGACAAGC-ATCGATTCTCGT-AAGAGGCTCCATGCTTTTC
185 GTCTAAGTTCGTGCCTCA-AATGA-GACAAACGA-GGATTCTAGTCATGA-TCTTCATTCTTTTT
* * * * * * ** *
56312 GAGATT-GGGAGCTA-AGAACACATTC-CCTTCA-TAAGGATACATGACATTGATGCTTTGGTGT
246 GTGATTAGGGA-CTATA-AACACATTCTCC-TCATTAA-GATAAATGATATTCACGATTTTCTTT
* * * * * *** * * ** * * * *
56373 CGCAAGAAAATGTTTTCTTT-CCACCGTTTTTGATAGA-ATTAAAGTTTGTCTCTTAAATAAGAC
307 TGCATGGAAATCTTTTCTTTGCC-CCATTTTCCTTA-ATATCAAAATTCATCCCATAATTATGAC
* ** * * *** ** * * * * * * *
56436 AAAC-AAGAATTGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTC
370 AAGCTTCG-ATTCTCGTAAGAGGCTCCATGCTTTTCGA-GATT-GGGAGCTAAGAACACATT-CC
* * ** * * * * * *
56496 TTCTCATAAGAATACACAATATTGATTCTCTGGTTTCGTAAG-AAAGG
431 CT-TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * * * * * * * * * *
56543 CTTTCATGT-CACCAATTTTTG-TA-AAGTCTATGTTCGTGC-CTCAAATGAGACAAATGAGGAT
1 TTTTC-TTTCCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAA-CAAGAA
** ** * ** **
56604 TCTAGTCATG---ATCTTCATTCTTTTTGTGATTAGGGATTATAAACACAT-TCTTCTCATTAA-
61 T-T-GTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCA-TAAG
* * * * * *
56664 GATAAATGA-TATTCA--C---GATTT--T--------C-TT-TT-CCACC-GTTTTTGATAGAA
122 GATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTG-TA-AA
* * * * * * ** * *
56709 GT-AAAGTTTGT-CTCTTAAATAAGACAAAC-AAGAAT-TA-TCATGCTAATCCCCAATCTTTTC
185 GTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATG---ATCTTCATTCTTTTT
* * * * * * * * * * * * ** *
56769 ATGATTAGGCACCAT-AA-ACTTTGTCTTCTTATAAGGATACACGATTATTGATGCTTTGGTTTC
246 GTGATTAGGGACTATAAACACATTCTCCTCAT-TAA-GATAAATGA-TATTCACGATTTTCTTTT
* * * * * * * * * *
56832 GTAAGAAAAGC-TTTC-TTGTCACCAAATTTT--GTAA-AGTCTAAGTTCGTGCCTCA-AATGA-
308 GCATGGAAATCTTTTCTTTG-C-CC-CATTTTCCTTAATA-TCAAAATTCAT-CC-CATAATTAT
* * *** * * * * * * * *
56890 GGCAAACGAGGATTCTAGCCACGA-TCTTCATTCTTTTTGTGATTAGGGA-CTATA-AACACATT
367 GACAAGCTTCGATTCTCG-TAAGAGGCTCCATGCTTTTCGAGATT-GGGAGCTA-AGAACACATT
* * * * * * * * * *
56952 CTCC-TCATTAGGATAAACGATATTCGCAAT--TTT-CTTTTGCATGGAAATC
429 C-CCTTCATAAGGATACATGACATT-G--ATGCTTTGGTGTCGCAAGAAAATG
* * ** ** * * * * **
57001 TTTTCTTTGCC-CCATTTCCTTAATATCA--AAA-TTCATCTCATAATTATGACAAGCTTCG-AT
1 TTTTCTTT-CCACCGTTT--TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAC-AAGAAT
* * *** ** * * * * * * * * *
57061 TCTCGTAAGAGGCTCCATGCTTTTCGA-CATT-GGGAGCTAAGAACACATT-CCCT-TCATAAGG
62 TGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTCTTCTCATAAGG
* * * * * * * *
57122 ATCCATGA-CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TC-CACAGTTTTTGATAGA
123 ATACACGATTATTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGTCAC-CAATTTTTG-TA-A
* * * * * * * **
57184 AGT-AAAGTTTGT-CTCTTAAATAAGACAAA-AAAGAAT-T-GTCATGCTAGTCCCCATTCTTTT
184 AGTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATG--A-TCTTCATTCTTTT
** * * * ** * * * *
57244 CATGATTAAGCACCATAAAC-TTTGTCTTCTCA-TAAGAATACACGATATT---GATTCTCTAGT
245 TGTGATTAGGGACTATAAACACAT-TCTCCTCATTAAG-ATAAATGATATTCACGATTTTCT--T
* * * * ** * * * * * *
57304 TT-CGTAAGAAAGGC-TTTC-TTGTCACCAATTTTTATGAA-GTCTAAGTTCGTGCCTCA-AATG
306 TTGCAT-GGAAA-TCTTTTCTTTG-C-CCCATTTTCCTTAATATCAAAATTCAT-CC-CATAATT
* *** * * * * *
57364 A-GACAAACAAGGATTCTAG-ACATGA-TCTTCATTG-TTTTTGTGATTAGGGA-CTATA-AACA
365 ATGACAAGCTTCGATTCTCGTA-A-GAGGCTCCA-TGCTTTTCGAGATT-GGGAGCTA-AGAACA
* * * * * * * * * *
57423 CATTCTCC-TCATTAGGATAAACGATATTCGCAAT--TTT-CTTTTGCATGGAAATC
425 CATTC-CCTTCATAAGGATACATGACATT-G--ATGCTTTGGTGTCGCAAGAAAATG
* * ** ** * * * * **
57476 TTTTCTTTGCC-CCATTTCCTTAATATCA--AAA-TTCATCTCATAATTATGACAAGCTTCG-AT
1 TTTTCTTT-CCACCGTTT--TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAC-AAGAAT
* * *** ** * * * * * * * * *
57536 TCTCGTAAGAGGCTCCATGCTTTTCGA-CATT-GGGAGCTAAGAACACATT-CCCT-TCATAAGG
62 TGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTCTTCTCATAAGG
* * * * * * *
57597 ATACATGA-CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TC-CACAGTTTTTGATAGA
123 ATACACGATTATTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGTCAC-CAATTTTTG-TA-A
* * * * * * * **
57659 AGT-AAAGTTTGT-CTCTTAAATAAGACAAA-AAAGAAT-T-GTCATGCTAATCCCCATTCTTTT
184 AGTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATG---ATCTTCATTCTTTT
** * * * ** * * * *
57719 CATGATTAAGCACCATAAAC-TTTGTCTTCTCA-TAAGAATACACGATATT---GATTCTCTAGT
245 TGTGATTAGGGACTATAAACACAT-TCTCCTCATTAAG-ATAAATGATATTCACGATTTTCT--T
* * * * ** * * * * * *
57779 TT-CGTAAGAAAGGC-TTTC-TTGTCACCAATTTTTATGAA-GTCTAAGTTCGTGCCTCA-AATG
306 TTGCAT-GGAAA-TCTTTTCTTTG-C-CCCATTTTCCTTAATATCAAAATTCAT-CC-CATAATT
* *** * * * * * *
57839 A-GACAAACAAGGATTCTAG-ACATGA-TCTTCATTG-TTTTTGTGATTAGGGA-CGATA-AACA
365 ATGACAAGCTTCGATTCTCGTA-A-GAGGCTCCA-TGCTTTTCGAGATT-GGGAGCTA-AGAACA
* * * * * * * ** * * * * *
57898 CATTCTCC-TCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATC
425 CATTC-CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * ** * * ** * * * * * *
57951 TTTTCTTTTC-CCTTTTTTCCTTA-ATGTCAAAATTCATCCCATAATTACGACAAGCATCG-ATT
1 TTTTCTTTCCACCGTTTTT-GATAGAAGT-AAAGTTTGTCTCTTAAATAAGACAAACA-AGAATT
* * *** ** * * * * * * * *
58013 CTCGTAAGAGGCTCCATGCTTTTCGA-GATT-GGGAGCTAAGAACACATT-CCCT-TCATAAGGA
63 GTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTCTTCTCATAAGGA
* * * * * * *
58074 TACATGA-CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACC-GTTTTTGATAGAA
124 TACACGATTATTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGT-CACCAATTTTTG-TA-AA
* * * * * **
58136 -T-TAAAGTTTGT-CTCTTAAATAAGACAAAC-AAGAAT-T-GTCATGCTAATCCCCATTCTTTT
185 GTCT-AAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATG---ATCTTCATTCTTTT
** * * ** * * ** *
58195 CATGATTAGGCACCATAAAC-TTTGTCTTCTCA-TAAGAATACACAATATT---GATTCTCTGGT
245 TGTGATTAGGGACTATAAACACAT-TCTCCTCATTAAG-ATAAATGATATTCACGATTTTCT--T
* * * * * * ** *
58255 TT-CGTAAGAAAGGC-TTTC-ATGTCACCAATTTT--TGTAA-AGTCTATGTTCGTGCCTCA-AA
306 TTGCAT-GGAAA-TCTTTTCTTTG-C-CCCATTTTCCT-TAATA-TCAAAATTCAT-CC-CATAA
* * ** * * * * * * * *
58313 TGA-GACAA-ATGAGGATTCTAGTCATGA-TCTTCATTCTTTTTGTGATTAGGGA-TTATA-AAC
363 TTATGACAAGCT-TCGATTCTCGT-AAGAGGCTCCATGCTTTTCGAGATT-GGGAGCTA-AGAAC
* * *
58373 ACATT-CTTCTCATTAA-GAT--A--A-A-TGA-----T-AT-T--CACG---A--
424 ACATTCCCT-TCA-TAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
*
58407 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
1 TTTTC-TTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
* *
58472 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACG
65 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACG
* *
58537 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTC
130 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* * *
58602 GTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* * * *
58667 TAAACACATTCTCCTCATTAGGATAAACGATATTCGCAATTTTCTTTTGCATGGAAATCTTTTCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
*
58732 TTGCCCCA-TTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* *
58796 GGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATCCATGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
58861 TGCTTTGGTGTCGCAAGAAAATG
455 TGCTTTGGTGTCGCAAGAAAATG
* *
58884 TTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * *
58949 ATGCTAGTCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * *
59014 -TATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
59078 TGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* **
59143 AAACACATTCTCCTCATTAGGATAAACAATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * * *
59208 TTCCCTTTTTTCCTTAATGTCAAAATTCTTCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
59273 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
59338 GCTTTGGTGTCGCAAGAAAATG
456 GCTTTGGTGTCGCAAGAAAATG
*
59360 TTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
59425 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-A
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * *
59489 ATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* *
59554 TGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGATTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
*
59619 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATC-TTTCAT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* * *
59683 TGCCCCTTTTTCCTTAATATCAGAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTTAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* *
59748 GCTCCATGCTTTTCAAGATTGGGAGCTAAGAACACATTCCCTTCGTAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
59813 GCTTTGGTGTCGCAAGAAAATG
456 GCTTTGGTGTCGCAAGAAAATG
*
59835 TTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
59900 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-A
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * *
59964 ATATTGATTCTTTGGTTTCGTAAGAAAGGATTTCTTGTCACCAATTTTTGTAAAGTCTAAATTTG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
**
60029 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCAATTTGTGATTAGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * * *
60094 AAACACATTCTCCTCTTTAGGATAAACGGTATTCATGATTTT-TTGTTGCATGGAAATCTTTTCT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTT-TTGCATGGAAATCTTTTCT
* * ** * * * * *
60158 TTTCACTTTTTTCCTTAATATCAAAATTCATCCCCTAATTATGGCAAGCATCGATTCTCCTATGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* * * *
60223 GGCTCCATTCTTTTCGAGATTGGGAGATAAGAACACATTCCCTTCATAAGGGTACACGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
60288 TGCTTTGGTGTCGCAAGAAAATG
455 TGCTTTGGTGTCGCAAGAAAATG
*
60311 TTTTCTTTCCACCGTTTTTTG-TAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAACAATTGT
1 TTTTCTTTCCACCG-TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
* * *
60375 CATGCTAATCCCCATTCTTTTCATGAATAGGCACCATAAACTTTGTCTTCTCAAAAGGATACATG
65 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACG
* *
60440 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCTCCAATTTTTCTAAAGTCTAAGTTC
130 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* * *
60505 TTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGGTTAGGGACTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* * * * * *
60570 AAAACACATTCTCCTCATTAGGAGAAACGATATTCACAATTTTCTTTTGCAGGGAAATCTTTTCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
60635 TTGCCTCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACCAGCTTCGATTCACGTAAGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* * *
60700 GGCTCCATGCTTTTCGAGATTGGGAGCTATGAGCACATTCCCTTCATAAGGATACACGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
*
60765 TGCTTTGGTGTCGCAAGAAAAAG
455 TGCTTTGGTGTCGCAAGAAAATG
* *
60788 TTTTCTTTCCACCGTTTTTCATTGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
60846 CATGACTATA
Statistics
Matches: 8895, Mismatches: 820, Indels: 557
0.87 0.08 0.05
Matches are distributed among these distances:
454 4 0.00
455 31 0.00
456 78 0.01
457 555 0.06
458 206 0.02
459 28 0.00
460 21 0.00
461 11 0.00
462 6 0.00
463 4 0.00
464 1 0.00
465 3 0.00
466 1 0.00
467 1 0.00
468 4 0.00
469 1 0.00
470 4 0.00
471 8 0.00
472 17 0.00
473 456 0.05
474 39 0.00
475 2987 0.34
476 2337 0.26
477 1662 0.19
478 425 0.05
479 3 0.00
480 1 0.00
481 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (477 bp):
TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAATG
Found at i:52225 original size:952 final size:953
Alignment explanation
Indices: 50375--74998 Score: 9940
Period size: 952 Copynumber: 26.1 Consensus size: 953
50365 ATATTCACGA
50375 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
1 TTTTC-TTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
* * * *
50440 CATGCTAATCCCCAATCTTTTCGTGATTAGGCGCCATAAACTTTGTCTTCTTATAAGGATACACG
65 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACG
* *
50505 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAATTTTTGTAAAGTCTATGTTC
130 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* * *
50570 GTGCCTCAAAAGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGGCTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
50635 TAAACACATTCTCCTCATTAAGATAAATGATTTTCACGATTTTCTTTTGCATGGAAATCTCTTCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * * *
50700 TTGCCCCATTTTCCTTAATATCAAAATTAATCCCACAATTATGACAAGCTTCGATTGTCATAAGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
** * *
50765 GGCTCCATTTTTTTTGAGATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACATGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * *
50830 AGCTTCGGTGTCGCAAGAAAATGTTTTCTTTCCCCCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
50895 AAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTATCATGATTAGGCACCATAAA-TT
520 AAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTT
*
50959 GTCTTCTCAAAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCA
585 GTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCA
* * * *
51024 ATTTTTCTAAAGCCTAAGTTCGTGCCTCAAATGAGATAAACAAGGATTCTAGTCAAGATCTTCAT
650 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCAT
* * * *
51089 TATTTTTGTGATTTGGGACTATAAACACATTCTCCTCGTTAAGATAAATGATTTTCACGATTTTC
715 TCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTC
51154 TTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGA
780 TTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGA
* *
51219 CAAGCTTCGATTGTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCATTCCCTT
845 CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTT
* *
51284 CATAAGGATACATGACATTGAAGCTTCGGTGTCGCAAGAAAATG
910 CATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* *
51328 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAGATAAGAAAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* *
51393 ATGCTATTCCCCATTCTTTTCATGGTTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* *
51458 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTATCACCAATTTTTGTAAAGTCTAAGTTTG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* *
51523 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTATTTTTGTGATTTGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * *
51588 AAACACATTCTCCTCGTTAAGATAAATGATTTTCACAATTTTCTTTTGCATGGAAATCTCTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
51653 TGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTGTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* *
51718 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCATTCCCTTCATAAGGATACATGACATTGAA
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
*
51783 GCTTCGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
* * * *
51848 GATAAGAAAAACAAGAATTGTCATGCTATTCCCCATTCTTTTCATGATTGGGCACCATAAA-TTG
521 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTG
* *
51912 TCTTCTCAAAAGTATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAA
586 TCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAA
* * *
51977 TTTTTGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACAAGGGTTCTAGTCAAGATCTTCATT
651 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATT
* * *
52042 CTTTTTGTGATTTGGGACTATAAACACATTCTCCTCGTTAAGATAAATGATTTTCACGATTTTCT
716 CTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCT
*
52107 TTTGCATGGAAATCTCATCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGAC
781 TTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGAC
* * ** * *
52172 AAGCTTCGATTGTCATAAGAGGCTCCATTTTTTTTGAGATTGGGAACTAAGAACACATTCCCTTC
846 AAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTC
*
52237 ATAAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAATG
911 ATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
*
52280 TTTTCTTTCCACCGTTTTTGATAGTAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
52345 ATGCTAATCCCCATTCTTTTCATGGTTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * *
52410 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCGTATCACCAATTTTTGTAAAGTCTAAGTTTG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
*
52475 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCCTTTTGTGATTAGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* *
52540 AAACACATTCTCCTCATTAAAATAAATGATATTCACG----TCTTTTGCGTGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
52601 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACACGCTTTGATTCTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* * *
52666 GCTCCACGCTTTTCGATATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGTT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
52731 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
*
52796 AATAAGACAAACAAGAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTT
521 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TT
* * * *
52861 GTCTTCTTATAAGGATACACGATTATTGATGCTTTGGATTCGTAAGAAAAGCTTTCTTGTCACCA
585 GTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCA
* * *
52926 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACGAGGATTCTAGCCATGATCTTCAT
650 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCAT
* * *
52991 TCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTC
715 TCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTC
* * * ** * ** *
53056 TTTTGCAAGGAAATCTTTTCTTTTCCCTTTTTTCCTTAATGTCAAAATTCTTCCCATAATTACGA
780 TTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGA
*
53121 CAAGCATCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTT
845 CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTT
53186 CATAAGGATACATGACATTGATGCTTTGGTG-CTGCAAGAAAATG
910 CATAAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAATG
* * * *
53230 TTTTCTTTCCACCATTTTTTATAGAACTAAAGTTTGTCTCTTAAATAAGACAGACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * * *
53295 ATGGTAATCCCCATTCTTTTCATGATTAGGCACCAGAAACTTTGTCTTCTCATAAGAATACATGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * *
53360 TTATTGATGTTTTGGTTTCGTAAGAAAAGATTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
53425 TGCCTCAAATGAGACAAACAAGGATTCTAGTCACGATCTTCATTCTTTTTGTGATTAGGGACTCT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * *
53490 AAGCAGATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
53555 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACACGGCTTTGATTCTCGTAAGA
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACA-AGCTTCGATTCTCGTAAGA
* * *
53620 GGCTCCATGCTTTTCGATATTGGGAGCTAAGAACACATTCCCTTGATAAGGATACATGACATTGT
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
*
53685 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
53750 AAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACTT
520 AAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-T
* * * *
53815 TGTCTTCTTATAAGGATACACGATTATTGATGCTTTGGTTTCATAAGAAAAGCTTTCTTGTCACC
584 TGTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACC
* * * *
53880 AAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCA
649 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCA
* * * *
53945 TTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAATTTT
714 TTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTT
* * *
54010 CTTTTGCATGGAAATCTTTTCTTTGCCCCA-TTTCCTTAATATCAAAATTCATCTCATAATTATG
779 CTTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATG
*
54074 ACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCT
844 ACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCT
54139 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
909 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* *
54184 TTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* *
54249 ATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * *
54314 -TATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
54378 TGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* *
54443 AAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * *
54508 TTCCCTTTTTTCCTTAATGTCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
54573 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
*
54638 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
54703 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTT
521 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TT
* * * *
54768 GTCTTCTCATAAGAATACAC-AATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCA
585 GTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCA
* * *
54832 ATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCAT
650 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCAT
* *
54897 TCTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAAGATAAATGATATTCACGATTTTC
715 TCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTC
* ** * * ** * * * *
54962 TTTT-C-----CA-C-CGTT-TTTG----A---T--AGAA-GT-AAAGTTTGTCTCTTAAATAAG
780 TTTTGCATGGAAATCTC-TTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATG
* ** * * *** ** * * * * *
55007 ACAAAC-AAGAATTATCATGCTAATCCCCAAT-CTTTTC-ATGATTAGGCA-C-CATAA-ACTTT
844 ACAAGCTTCG-ATTCTCGTAAGAGGCTCC-ATGCTTTTCGA-GATT-GGGAGCTAAGAACACATT
** * * * *
55066 GTCTTCTTATAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAA-G
905 CCCTTC--ATAAGGATACATGA-CATTGATGCTTTGGTGTCGCAAGAAAATG
* ** * * * * * * *
55117 CTTTCTTGT-CACCAAATTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGGCAAACGAGGAT
1 TTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAAT
* * ** ** * * ** * *
55178 TCT-A-GCCACGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACAT-TCTCCTCATTAGGA
62 TGTCATGCTA--ATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGA
* * * * * * * *
55240 TAAACGA-TATTCGCAAT--TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGC-CCCATTTCCT-T
124 TACACGATTATT-G--ATGCTTTGGTTTCGTA-AGAAAGGC-TTTCTTGT-CACCAATTT-TTGT
* * * * * *** * * * * *
55297 AATA-TCAAAATTCAT--CTCATAATTATGACAAGCTTCGATTCTCGT-AAGAGGCTCCATGCTT
182 AA-AGTCTAAGTTCGTGCCTCA-AATGA-GACAAACGAGGATTCTAGTCATGA-TCTTCATTCTT
* ** ** * * * * **
55358 TTCGACATT-GGGAGCTA-AGAACACATTC-CCTTCA-TAAGGATCCATGACATTGATGCTTTGG
243 TTTGTGATTAGGGA-CTATA-AACACATTCTCC-TCATTAA-GATAAATGATATTCACGATTTTC
* * * * * * *** * ** * * *
55419 TGTCGCAAGAAAATGTTTTCTTT-CCACAGTTTTTGATAGA-AGT-AAAGTTTGTCTCTTAAATA
304 TTTTGCATGGAAATCTTTTCTTTGCCCCA-TTTTCCTTA-ATA-TCAAAATTCATCCCATAATTA
* **** * * *** * * * * * *
55481 AGACAA-AAAAGAATTGTCATGCTAGTCCCCATTCTTTTC-ATGATT--AAGC-ACCATAA-ACT
366 TGACAAGCTTCG-ATTCTCGTAAGAGGCTCCATGCTTTTCGA-GATTGGGAGCTA--AGAACACA
* * * * * * * * * * * *
55540 TTGTCTTCTCATAAGAATACACGATATTGATTCTCTAGTTTCGTAAG-AAAGGCTTTCTTGT-CA
427 TT-CCCT-TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCA
* * * * * * * *
55603 CCAATTTTT-AT-GAAGTCTAAGTTCGTGC-CTCAAATGAGACAAACAAGGATTCT-A-GACATG
489 CC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAATTGTCATG-C-TA
** * ** * * * * * * *
55663 ATCTTCATTGTTTTTGTGATTAGGGACTATAAACACAT-TCTCCTCATTAGGATAAACGA-TATT
549 ATCCCCATTCTTTTCATGATTAGGCACCAT-AA-ACTTGTCTTCTCATAAGAATACACGATTATT
* * * * * * * * *
55726 CGCAAT--TTT-CTTTTGCATGGAAA-TCTTTTCTT-TGC-CCCATTTCCT-TAATA-TCAAAAT
612 -G--ATGCTTTGGTTTCGTA-AGAAAGGC-TTTCTTGT-CACCAATTT-TTGTAA-AGTCTAAGT
* * * *** * * * * * **
55783 TCAT--CTCATAATTATGACAAGCTTCGATTCTCGT-AAGAGGCTCCATGCTTTTCGACATT-GG
669 TCGTGCCTCA-AATGA-GACAAACGAGGATTCTAGTCAAGA-TCTTCATTCTTTTTGTGATTAGG
* * * * * ** * * * *
55844 GAGCTA-AGAACACATTC-CCTTCA-TAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
731 GA-CTATA-AACACATTCTCC-TCATTAA-GATAAATGATATTCACGATTTTCTTTTGCATGGAA
* * * *** * ** * * * * ****
55906 ATGTTTTCTTT-CCACAGTTTTTGATAGA-AGT-AAAGTTTGTCTCTTAAATAAGACAA-AAAAG
792 ATCTCTTCTTTGCCCCA-TTTTCCTTA-ATA-TCAAAATTAATCCCATAATTATGACAAGCTTCG
* * *** ** * * * * * * *
55967 AATTGTCATGCTAATCCCCATTCTTTTC-ATGATT--AAGC-ACCATAA-ACTTTGTCTTCTCAT
854 -ATTCTCGTAAGAGGCTCCATGCTTTTCGA-GATTGGGAGCTA--AGAACACATT-CCCT-TCAT
* * * * * * * * *
56027 AAGAATACACGATATTGATTCTCTAGTTTCGTAAG-AAAGG
913 AAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * * * * * *
56067 CTTTCTTGT-CACCAATTTTT-AT-GAAGTCTAAGTTCGTGC-CTCAAATGAGACAAACAAGGAT
1 TTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAAT
* * ** * ** * * ** * *
56128 TCT-A-GACATGATCTTCATTGTTTTTGTGATTAGGGACGATAAACACAT-TCTCCTCATTAGGA
62 TGTCATG-C-TAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGA
* * * * ** * * * * * * * *
56190 TAAACGA-TATTCACGATTTTCTTTTGCATGGAAA-TCTTTTCTTTTC-CC-TTTTTTCCTTAAT
124 TACACGATTATTGATGCTTTGGTTTCGTA-AGAAAGGC-TTTCTTGTCACCAATTTTT--GTAAA
* * * * * * * * * * * *
56251 GTCAAAATTCAT-CC-CATAATTACGACAAGC-ATCGATTCTCGT-AAGAGGCTCCATGCTTTTC
185 GTCTAAGTTCGTGCCTCA-AATGA-GACAAACGA-GGATTCTAGTCATGA-TCTTCATTCTTTTT
* * * * * * ** *
56312 GAGATT-GGGAGCTA-AGAACACATTC-CCTTCA-TAAGGATACATGACATTGATGCTTTGGTGT
246 GTGATTAGGGA-CTATA-AACACATTCTCC-TCATTAA-GATAAATGATATTCACGATTTTCTTT
* * * * * *** * * ** * * * *
56373 CGCAAGAAAATGTTTTCTTT-CCACCGTTTTTGATAGA-ATTAAAGTTTGTCTCTTAAATAAGAC
307 TGCATGGAAATCTTTTCTTTGCC-CCATTTTCCTTA-ATATCAAAATTCATCCCATAATTATGAC
* ** * * *** ** * * * * * * *
56436 AAAC-AAGAATTGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTC
370 AAGCTTCG-ATTCTCGTAAGAGGCTCCATGCTTTTCGA-GATT-GGGAGCTAAGAACACATT-CC
* * ** * * * * * * * * *
56496 TTCTCATAAGAATACACAATATTGATTCTCTGGTTTCGTAAG-AAAGGCTTTCATGT-CACCAAT
431 CT-TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTC-TTTCCACC-GT
* * * * * * * * *
56559 TTTTG-TA-AAGTCTATGTTCGTGC-CTCAAATGAGACAAATGAGGATTCTAGTCATG---ATCT
493 TTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAA-CAAGAAT-T-GTCATGCTAATCC
* ** * ** * * * *
56618 TCATTCTTTTTGTGATTAGGGATTATAAACACAT-TCTTCTCATTAAG-ATAAATGA-TATTCA-
553 CCATTCTTTTCATGATTAGGCACCAT-AA-ACTTGTCTTCTCA-TAAGAATACACGATTATTGAT
* * * * *
56679 -C---GATTT--T--------C-TT-TT-CCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCT
615 GCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTG-TA-AAGTCTAAGTTCGTGC-CT
* * * * * * ** * ** * *
56724 TAAATAAGACAAACAAGAATTATCA-TGCTA-ATCCCCAATCTTTTCATGATTAGGCACCAT-AA
677 CAAATGAGACAAACGAGGATTCT-AGT-CAAGATCTTCATTCTTTTTGTGATTAGGGACTATAAA
* * * * * * * * * ** * * * * *
56786 -ACTTTGTCTTCTTATAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAAGCT-TTC-T
740 CACATTCTCCTCAT-TAA-GATAAATGA-TATTCACGATTTTCTTTTGCATGGAAATCTCTTCTT
* * * * ** * * * *** *
56848 TGTCACCAAATTTT--GTAA-AGTCTAAGTTCGTGCCTCA-AATGA-GGCAAACGAGGATTCTAG
802 TG-C-CC-CATTTTCCTTAATA-TCAAAATTAAT-CC-CATAATTATGACAAGCTTCGATTCTCG
* * * * * * * * *
56908 CCACGA-TCTTCATTCTTTTTGTGATTAGGGA-CTATA-AACACATTCTCC-TCATTAGGATAAA
861 -TAAGAGGCTCCATGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCTTCATAAGGATACA
* * * * * * * *
56969 CGATATTCGCAAT--TTT-CTTTTGCATGGAAATC
922 TGACATT-G--ATGCTTTGGTGTCGCAAGAAAATG
* * ** ** * * * * **
57001 TTTTCTTTGCC-CCATTTCCTTAATATCA--AAA-TTCATCTCATAATTATGACAAGCTTCG-AT
1 TTTTCTTT-CCACCGTTT--TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAC-AAGAAT
* * *** ** * * * * * * * * *
57061 TCTCGTAAGAGGCTCCATGCTTTTCGA-CATT-GGGAGCTAAGAACACATT-CCCT-TCATAAGG
62 TGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTCTTCTCATAAGG
* * * * * * * *
57122 ATCCATGA-CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TC-CACAGTTTTTGATAGA
123 ATACACGATTATTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGTCAC-CAATTTTTG-TA-A
* * * * * * * **
57184 AGT-AAAGTTTGT-CTCTTAAATAAGACAAA-AAAGAAT-T-GTCATGCTAGTCCCCATTCTTTT
184 AGTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATG--A-TCTTCATTCTTTT
** * * * ** * * * *
57244 CATGATTAAGCACCATAAAC-TTTGTCTTCTCA-TAAGAATACACGATATT---GATTCTCTAGT
245 TGTGATTAGGGACTATAAACACAT-TCTCCTCATTAAG-ATAAATGATATTCACGATTTTCT--T
* * * * ** * * * * * *
57304 TT-CGTAAGAAAGGC-TTTC-TTGTCACCAATTTTTATGAA-GTCTAAGTTCGTGCCTCA-AATG
306 TTGCAT-GGAAA-TCTTTTCTTTG-C-CCCATTTTCCTTAATATCAAAATTCAT-CC-CATAATT
* *** * * * * *
57364 A-GACAAACAAGGATTCTAG-ACATGA-TCTTCATTG-TTTTTGTGATTAGGGA-CTATA-AACA
365 ATGACAAGCTTCGATTCTCGTA-A-GAGGCTCCA-TGCTTTTCGAGATT-GGGAGCTA-AGAACA
* * * * * * * * * *
57423 CATTCTCC-TCATTAGGATAAACGATATTCGCAAT--TTT-CTTTTGCATGGAAATCTTTTCTTT
425 CATTC-CCTTCATAAGGATACATGACATT-G--ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTT
* * ** ** * * * * ** * * **
57484 GCC-CCATTTCCTTAATATCA--AAA-TTCATCTCATAATTATGACAAGCTTCG-ATTCTCGTAA
486 -CCACCGTTT--TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAC-AAGAATTGTCATGC
* ** * * * * * * * * * *
57544 GAGGCTCCATGCTTTTCGA-CATT-GGGAGCTAAGAACACAT-TC-CCTTCATAAGGATACATGA
547 TAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTGTCTTC-TCATAAGAATACACGA
* * * * * * *
57605 -CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TC-CACAGTTTTTGATAGAAGT-AAAG
607 TTATTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGTCAC-CAATTTTTG-TA-AAGTCTAAG
* * * ** * * * ** ** *
57666 TTTGT-CTCTTAAATAAGACAAAAAAGAATTGTCA-TGCTA-ATCCCCATTCTTTTCATGATTAA
668 TTCGTGC-CTCAAATGAGACAAACGAGGATTCT-AGT-CAAGATCTTCATTCTTTTTGTGATTAG
* * ** * * * * * *
57728 GCACCATAAAC-TTTGTCTTCTCA-TAAGAATACACGATATT---GATTCTCTAGTTT-CGTAAG
730 GGACTATAAACACAT-TCTCCTCATTAAG-ATAAATGATATTCACGATTTTCT--TTTGCAT-GG
* * ** * * * * ** * *
57787 AAAGGCT-TTC-TTGTCACCAATTTTTATGAA-GTCTAAGTTCGTGCCTCA-AATGA-GACAAAC
790 AAA-TCTCTTCTTTG-C-CCCATTTTCCTTAATATCAAAATTAAT-CC-CATAATTATGACAAGC
*** * * * * * *
57847 AAGGATTCTAG-ACATGA-TCTTCATTG-TTTTTGTGATTAGGGA-CGATA-AACACATTCTCC-
850 TTCGATTCTCGTA-A-GAGGCTCCA-TGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCT
* * * * * * * ** * * * * *
57906 TCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATC
909 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * ** * * ** * * * * * *
57951 TTTTCTTTTC-CCTTTTTTCCTTA-ATGTCAAAATTCATCCCATAATTACGACAAGCATCG-ATT
1 TTTTCTTTCCACCGTTTTT-GATAGAAGT-AAAGTTTGTCTCTTAAATAAGACAAACA-AGAATT
* * *** ** * * * * * * * *
58013 CTCGTAAGAGGCTCCATGCTTTTCGA-GATT-GGGAGCTAAGAACACATT-CCCT-TCATAAGGA
63 GTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTCTTCTCATAAGGA
* * * * * * *
58074 TACATGA-CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACC-GTTTTTGATAGAA
124 TACACGATTATTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGT-CACCAATTTTTG-TA-AA
* * * * * **
58136 -T-TAAAGTTTGT-CTCTTAAATAAGACAAAC-AAGAAT-T-GTCATGCTAATCCCCATTCTTTT
185 GTCT-AAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATG---ATCTTCATTCTTTT
** * * ** * * ** *
58195 CATGATTAGGCACCATAAAC-TTTGTCTTCTCA-TAAGAATACACAATATT---GATTCTCTGGT
245 TGTGATTAGGGACTATAAACACAT-TCTCCTCATTAAG-ATAAATGATATTCACGATTTTCT--T
* * * * * * ** *
58255 TT-CGTAAGAAAGGC-TTTC-ATGTCACCAATTTT--TGTAA-AGTCTATGTTCGTGCCTCA-AA
306 TTGCAT-GGAAA-TCTTTTCTTTG-C-CCCATTTTCCT-TAATA-TCAAAATTCAT-CC-CATAA
* * ** * * * * * * * *
58313 TGA-GACAA-ATGAGGATTCTAGTCATGA-TCTTCATTCTTTTTGTGATTAGGGA-TTATA-AAC
363 TTATGACAAGCT-TCGATTCTCGT-AAGAGGCTCCATGCTTTTCGAGATT-GGGAGCTA-AGAAC
* * *
58373 ACATT-CTTCTCATTAA-GAT--A--A-A-TGA-----T-AT-T--CACG---A--TTTTCTTTT
424 ACATTCCCT-TCA-TAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTC-TTT
*
58416 CCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTATCATGCTAAT
486 CCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT
* * *
58481 CCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACGATTATTGAT
551 CCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGAATACACGATTATTGAT
* *
58546 GCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAA
615 GCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * *
58611 ATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACAT
680 ATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACAT
* * * * *
58676 TCTCCTCATTAGGATAAACGATATTCGCAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCA-
745 TCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTTTGCCCCAT
* *
58740 TTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATG
810 TTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATG
* *
58805 CTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATCCATGACATTGATGCTTTGGT
875 CTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGT
58870 GTCGCAAGAAAATG
940 GTCGCAAGAAAATG
* *
58884 TTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * *
58949 ATGCTAGTCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * *
59014 -TATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
59078 TGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* **
59143 AAACACATTCTCCTCATTAGGATAAACAATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * * *
59208 TTCCCTTTTTTCCTTAATGTCAAAATTCTTCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
59273 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
*
59338 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
59403 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTT
521 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TT
* * * *
59468 GTCTTCTCATAAGAATACAC-AATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCA
585 GTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCA
* * *
59532 ATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCAT
650 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCAT
*
59597 TCTTTTTGTGATTAGGGATTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTC
715 TCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTC
* * * *
59662 TTTTGCATGGAAATCT-TTCATTGCCCCTTTTTCCTTAATATCAGAATTCATCCCATAATTATGA
780 TTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGA
* *
59726 CAAGCTTCGATTCTCGTTAGAGGCTCCATGCTTTTCAAGATTGGGAGCTAAGAACACATTCCCTT
845 CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTT
*
59791 CGTAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
910 CATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
*
59835 TTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
59900 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-A
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * *
59964 ATATTGATTCTTTGGTTTCGTAAGAAAGGATTTCTTGTCACCAATTTTTGTAAAGTCTAAATTTG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
**
60029 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCAATTTGTGATTAGGGACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * * *
60094 AAACACATTCTCCTCTTTAGGATAAACGGTATTCATGATTTT-TTGTTGCATGGAAATCTTTTCT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTT-TTGCATGGAAATCTTTTCT
* * ** * * * * *
60158 TTTCACTTTTTTCCTTAATATCAAAATTCATCCCCTAATTATGGCAAGCATCGATTCTCCTATGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* * * *
60223 GGCTCCATTCTTTTCGAGATTGGGAGATAAGAACACATTCCCTTCATAAGGGTACACGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
60288 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTG-TAGAAGTAAAGTTTGTCTCT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG-TTTTTGATAGAAGTAAAGTTTGTCTCT
* *
60352 TAAATAAGACAAACAACAATTGTCATGCTAATCCCCATTCTTTTCATGAATAGGCACCATAAACT
519 TAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-
* * * *
60417 TTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCTC
583 TTGTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCAC
* *
60482 CAATTTTTCTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACGAGGATTCTAGT-AATGATCTT
648 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAA-GATCTT
* * * * * *
60546 CATTCTTTTTGTGGTTAGGGACTAAAAACACATTCTCCTCATTAGGAGAAACGATATTCACAATT
712 CATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATT
* * * *
60611 TTCTTTTGCAGGGAAATCTTTTCTTTGCCTCATTTTCCTTAATATCAAAATTCATCCCATAATTA
777 TTCTTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTA
* * * *
60676 TGACCAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTATGAGCACATTCC
842 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
* *
60741 CTTCATAAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAAG
907 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * * *
60788 TTTTCTTTCCACCGTTTTTCATTGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCA-TGAC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * * * * *
60852 -T-ATAA-ACACATTC---TCCTCATTAGG----ATAAAC---G-------AT----ATTCACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * * * * ** * *
60893 -T-TT--T-C-TT--TTGCAT-GGAAA-TCTTT-TAT-TTACGTTATTTTCCT-TAATA-ACAAA
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCT-TGTCAC-CAATTTT--TGTAA-AGTCTAA
* * * *** * * * * * * *
60944 ATTCAT-CC-CATAACT-ATGACAAGCTTCGATTCTCGT-AAGAGGCTGCATGCTTTTCGAGATT
191 GTTCGTGCCTCA-AA-TGA-GACAAACGAGGATTCTAGTCATGA-TCTTCATTCTTTTTGTGATT
* * * * * * ** * * *
61005 -GGGAGCTA-AGAACACGTTC-CCTTCA-TAAGGATACATGACATTAATGCTTTGGTGTCGCAAG
252 AGGGA-CTATA-AACACATTCTCC-TCATTAA-GATAAATGATATTCACGATTTTCTTTTGCATG
* * * *** * * * * *
61066 AAAATGTTTTCTTT-CCGCCGTTTTTGATAGA-AGT-AAAGTT--TGCCTATTAAATAAGACAAA
313 GAAATCTTTTCTTTGCC-CCATTTTCCTTA-ATA-TCAAAATTCAT-CCCA-TAATTATGACAAG
** * * *** ** * * * * * * *
61126 C-AAGAATTGTCATGCTAATCCCCAAT-CTTATC-ATGATTCGGCACCATAAG----CTTTGTCT
373 CTTCG-ATTCTCGTAAGAGGCTCC-ATGCTTTTCGA-GATT-GGGAGC-TAAGAACACATT-CCC
* * * * * * ** * * *
61184 TCTCGTAAGAATACAAGATATTGATTCTTTGGTTTCATAAG-AAAGGCTTTCTTGT-CACCAATT
432 T-TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACC-GTT
** * * * * * *
61247 TTTG-TA-AAGTCTCAGTTCGTGC-CTCAAATGAGACAAACAAGGATTCT-A-G-TAATGACCTT
494 TTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT--CC-C
** * * * * * * * * * *
61306 CATTCTTTTTGTGATTAGGGACTATAAACACAT-TCTCCTCATTAGGATAAATGA-TATTCACGA
554 CATTCTTTTCATGATTAGGCACCAT-AA-ACTTGTCTTCTCATAAGAATACACGATTATTGATG-
* ** * ** * * * * * * *
61369 TTTTCTTTTGGTGGGAAA-TCTTTTCTTTTC-CC-TTTTTTCCTTAATA-TCGAAATTCAT-CC-
616 CTTTGGTTTCGTAAGAAAGGC-TTTCTTGTCACCAATTTTT--GTAA-AGTCTAAGTTCGTGCCT
* * * ** * * * * *
61428 CATAATTATGGCAAGC-ATCAATTCTCGT-AAGAGGCTCCATTCTTTTCGAGATT-GGGAGCTA-
677 CA-AATGA-GACAAACGA-GGATTCTAGTCAAGA-TCTTCATTCTTTTTGTGATTAGGGA-CTAT
* * * * * * * ** * * * * *
61489 AGAACACATTC-CATTCA-TAAGGGTACATGACATTAATGCTTTGGTGTCGCA-AGAAAACGTTT
737 A-AACACATTCTC-CTCATTAA-GATAAATGATATTCACGATTTTCTTTTGCATGGAAATC-TCT
* *** * ** * * * * ** *
61551 TCTTT-CCACCGTTTTTGATAGA-AGT-AAAGTTTGTCTC-TAAAATAAGACAAAC-AAGAATTG
798 TCTTTGCC-CCATTTTCCTTA-ATA-TCAAAATTAATCCCAT-AATTATGACAAGCTTCG-ATTC
* *** ** * * * * * * * *
61611 TCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTCTTGTCATAAGGAT
858 TCGTAAGAGGCTCCATGCTTTTCGA-GATT-GGGAGCTAAGAACACATT-CCCT-TCATAAGGAT
** * * * * *
61672 ACGCGATATTGATTCTTTGGTTTCGTAAG-AAAGG
919 ACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * * * * * *
61706 TTTTCTTGT-CACCAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGAT
1 TTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAAT
* ** * ** ** ** ** * *
61767 TCT-AGTAATGATCTTCATTCTTTTTGTGATTAGGCACGGTAAACACAT-TCTCCTCATTAGGAT
62 TGTCA-TGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGAT
* * * * * ** * * * * * * *
61830 AAATGA-TATTCACGATTTTCTTTTGCACGGAAA-TCTATTCTT-TGCCCCACTTTCCT-TAATA
125 ACACGATTATTGATGCTTTGGTTTCGTA-AGAAAGGCT-TTCTTGT-CACCAATTT-TTGTAA-A
* * * ** * *** * * * * *
61891 -TCAAAATTCAT-CC-CATAATTCTGACAAGCTTCGATTC-ACGT-AAGAGGCTCCATGCTTTTC
185 GTCTAAGTTCGTGCCTCA-AA-TGAGACAAACGAGGATTCTA-GTCATGA-TCTTCATTCTTTTT
* * * * * * * * * * ** * *
61951 GAGATT-GGGAGCTATGAGCACATTC-CCT-TTATAAGGATACACGACATTGATGCTTTGGTGTC
246 GTGATTAGGGA-CTATAAACACATTCTCCTCAT-TAA-GATAAATGATATTCACGATTTTCTTTT
* * * * * * ** * *
62013 GCAAT-AAAATGTTTTCTTT-CCACCGTTTTTCATTGAA-GT-AAAGTTTGTCTCTTAA--AT--
308 GC-ATGGAAATCTTTTCTTTGCC-CC-ATTTTCCTT-AATATCAAAATTCATCCCATAATTATGA
* *
62070 -AA-----GA-----G-AA-A-----CAAG-----C--G--T--GA-CTATA-AACACATTCCCC
369 CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTA-AGAACACATTCCCT
* * * * * * * * * * * * * * * *** ** *
62104 TCATTATGATAAACGATATTCACGATGTT-CTTTTGCATGGAAATCTTTTTTTTATGCTATTTTC
433 TCATAAGGATACATGACATTGATGCT-TTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
** ** * * * ** * * *** ** *
62168 CTTA-ATA-TCCAAA-TTCATC-CTGTAACTATGACAAGCTTCG-ATTCTCGTAAGAGGCTCCAT
497 GATAGA-AGT--AAAGTTTGTCTCT-TAAATAAGACAAAC-AAGAATTGTCATGCTAATCCCCAT
* * * * * * * * *
62228 GCTTTTCGA-GATT-GGGAGCTAAAAACACAT-TC-CCTTCATAAGGATACATGA-CATTGATGC
557 TCTTTTC-ATGATTAGGCA-C-CATAA-ACTTGTCTTC-TCATAAGAATACACGATTATTGATGC
* * * * * * * *
62288 TTTGGTGTCGCAAGAAAAAGTTTTCTT-TCCATC-GTTTTTGATAGAAG-CAAAGTTTGT-CTCT
617 TTTGGTTTCGTAAG-AAAGGCTTTCTTGT-CACCAATTTTTG-TA-AAGTCTAAGTTCGTGC-CT
* *
62349 TAAAT---A-AGAC-A--A----A-T-AAG-----CA---------TG--T-----CTATAAACA
677 CAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGGACTATAAACA
* * * * ***
62380 CATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTATGC
742 CATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTTTGCCC
* * * *** * *
62445 TATTTTCCTTAATACCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCTTAAGAGGCTCC
807 CATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCC
* *
62510 ATTCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGATGCTTT
872 ATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTT
62575 GGTGTCGCAAGAAAATG
937 GGTGTCGCAAGAAAATG
* *
62592 TTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAACAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
62657 ATGCTAATCCCCATTCTTTTCTTGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * *
62722 -TATTGA-GTCTTTGGTTTCGTAAGAAAGGCTTTCTTCTCACAAATTTTTGTAATGTCTAAGTTC
131 TTATTGATG-CTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* ** *
62785 GTGCCTTAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGCAATTAGGCACTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* * * * * *
62850 TAAACACGTTCTCCTCGTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTCCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
62915 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGATAAGCTTCGATTATCGTAAGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
62980 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
63045 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTTATAGAAGTAAAGTTTGTCTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
* *
63110 AAACAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTT
520 AAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-T
* * * * *
63175 TGTCTTCACATAGGAATACAAGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTTGTTGTCAC
584 TGTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGC-TTTCTTGTCAC
* * * * *
63239 AAATTTTTGTAAATTCTAAATTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTC
648 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTC
* *
63304 ATT-TTTTTGGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATT
713 ATTCTTTTT-GTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATT
* * * *
63368 TTCTTTTGCATGGAAATCTTTTCTTT-TCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTA
777 TTCTTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTA
* * * * * *
63432 TGGCAAGCATCGATTCTCGTAGGAGGCACCATTCTTTCCGAGATTGGGAGCTAAGAACACATTCC
842 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
63497 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
907 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
*
63544 TTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
63609 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* * *
63674 -TATTGATTCTTTGCTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
63738 TGCCTCAAATGAGACAAACGAGGATTCTAGTAATGTTCTTCATCCTTTTTGTGATTAGGCA-TGG
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACT-A
* * *
63802 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * * *
63867 TTGGCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACGTAAGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* *
63932 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACACGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * *
63997 TGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGTCTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
* * * * * * * * * *
64062 AAATAAGAGAAACAAGCA-TGAC-T-ATAA-ACACATTC---CCCTCATTATG----ATAAAC--
520 AAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTT
* * * * * *
64114 G-------AT----ATTCACGATT-TTCA---TTT-G---CAT-GGAAA-TCTTTTCTT-T-ATG
585 GTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGC-TTTCTTGTCA-C
* * * * * * * * * *** *
64156 CTATTTTCCT-TAATA-TCCAAATTCAT-CCTGTAACT-ATTATAAGCTTCGATTCTCGT-AAGA
648 CAATTTT--TGTAA-AGTCTAAGTTCGTGCCT-CAAATGA-GACAAACGAGGATTCTAGTCAAGA
* * * * * * * *
64216 GGCTCCATGCTTTTCGAGATT-GGGAGCTAAAAACACATTC-CCTTCA-TAAGGATACATGACAT
708 -TCTTCATTCTTTTTGTGATTAGGGA-CTATAAACACATTCTCC-TCATTAA-GATAAATGATAT
* * * ** * * * * ** * * * *** * * **
64278 TGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTT-CCATCGTTTTTGATAGA-AGCAAAGTTTGT
769 TCACGATTTTCTTTTGCATGGAAATCTCTTCTTTGCC-CCATTTTCCTTA-ATATCAAAATTAAT
* * * *
64341 CTCTTAAATAAGACAA------A----C---A-A-G---CATG----TC-----T---A--T-A-
832 CCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAG
* * * * * * * * * ** * * * * *
64372 AACACATTCCCCTCGTTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATC
897 AACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
*** ** *** * ** * * * **
64429 TTTTCTTTATGCTATTTTCCTTA-ATA-TCAAAATTCATCT-TGTAACTATGACAAGCTTCG-AT
1 TTTTCTTTCCACCGTTTTTGATAGA-AGT-AAAGTTTGTCTCT-TAAATAAGACAAAC-AAGAAT
* * *** ** * * * * ** *
64490 TCTCTTAAGAGGCTCCATTCTTTTCGA-GATT-GGGAGCTAAAAACACAT-TC-CCTTCATAAGG
62 TGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-CCATAAAC-TTTGTCTTC-TCATAAGG
* * * * * * *
64551 ATACATGA-CATTGATGCTTTGGTGTCGCAAGAAA--ATGTTCTT-TCCATC-GTTTTTGATAGA
123 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCT-TTCTTGT-CACCAATTTTTG-TA-A
* * * * * * ** *
64611 AGT-AAAGTTTGT-CTCTTAAATAAGACAAAC-AAGAAT-T-GTCATGCTAATCCCCTTTCTTTT
184 AGTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATG---ATCTTCATTCTTTT
** * * ** * * * *** * *
64671 CATGATTAGGCACCATAAAC-TTTGTCTCCTCA-TAAGGATACACGATATTGATTCTTTTGTTTC
245 TGTGATTAGGGACTATAAACACAT-TCTCCTCATTAA-GATAAATGATATTCACGATTTTCTTTT
* * * * * * * *
64734 GTA-AGAAAGGC-TTTC-TTGTCACCAATTTT--TGTAA-AGTCTAAGTTCGTGCCTCA-AATGA
308 GCATGGAAA-TCTTTTCTTTG-C-CCCATTTTCCT-TAATA-TCAAAATTCAT-CC-CATAATTA
* *** * * * * * * *
64792 -GACAAACGAGGATTCTAGTCATGA-TCTTCATTCTTTTTGTA-ATTAGGCA-CTATA-AACACA
366 TGACAAGCTTCGATTCTCGT-AAGAGGCTCCATGCTTTTCG-AGATT-GGGAGCTA-AGAACACA
* * * * * * * * ** * * * * *
64852 TTCTAC-TCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-C
427 TTC-CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTT-CCAC
* * * ** * * * * ** ** * * * *
64915 C-ATTTTCATTA-ATA-TCAAAATTAATCCCATAATTATGACAGGCTTCG-ATTATCGTAG-GAG
490 CGTTTTTGA-TAGA-AGT-AAAGTTTGTCTCTTAAATAAGACAAAC-AAGAATTGTCAT-GCTAA
* * * * * * * * * * *
64975 GCTCCATGCTTTTCGA-GATT-GGGAGCTGAGAACACATT-CCAT-TCATAAGGATACATGA-CA
550 TCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-AC-TTGTCTTCTCATAAGAATACACGATTA
* * * * * * *
65035 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAGTTT
610 TTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGT-CACCAATTTTTG-TA-AAGTCTAAGTTC
* * * * * **
65097 GT-CTCTTAAATAAGACAAACAAGAATGGTC-A-TGCTA-ATC-TCTATTCTTTTCATGATTAGG
671 GTGC-CTCAAATGAGACAAACGAGGAT--TCTAGT-CAAGATCTTC-ATTCTTTTTGTGATTAGG
* * ** * * * * * ** * *** ** * * *
65157 CACCATAAAC-TTTGTCTTCTC-CTAGGAATACACGGCATTGATTCTTTGGTTTCGTA-AGAAAG
731 GACTATAAACACAT-TCTCCTCATTAAG-ATAAATGATATTCACGATTTTCTTTTGCATGGAAA-
* *** * * ** * * **
65219 GCT-TTC-TTGTCATAAATTTT--TGTAA-AGTCTAAGTTCGTGCCTCA-AATGA-GACAAACAA
793 TCTCTTCTTTG-C-CCCATTTTCCT-TAATA-TCAAAATTAAT-CC-CATAATTATGACAAGCTT
* * * * * ** * *
65277 GGATTCTAGTCATGA-TCTTCATTTTTTTTGTGATTAGGGA-CTATA-AACACATTCTCC-TCAT
852 CGATTCTCGT-AAGAGGCTCCATGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCTTCAT
* * * * * * * ** * * * * *
65338 TAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATC
913 AAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * ** * ** * * * * * *
65379 TTTTCTTTTC-CCTTTTTTCCTTA-ATA-TCAAAATTAATCCCATAAATATGGCAAGCATCG-AT
1 TTTTCTTTCCACCGTTTTT-GATAGA-AGT-AAAGTTTGTCTCTTAAATAAGACAAACA-AGAAT
* * ** * * * * * * * *
65440 TCTCGGAAG--AGGCTCCATTTTTTTCGA-GATT-GGGAGCTAAGAACACATT-CCCT-TCATAA
62 TGTC--ATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTTGTCTTCTCATAA
* * * * * *** * * * ** *
65499 GGGTACATGA-CATTGATGCTTTGGTGTCGCAAGAAAATTTTTTTTTTCCGCCGTTTTTTATAGA
121 GGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGT-CACCAATTTTTGTA-A
* * * * ** * **
65563 AG-C-AATGTTTGT-CTCTTAAATAATACAAAC-AAAAAT-T-GTCATGCTAATCCCCATTCTTT
184 AGTCTAA-GTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATG---ATCTTCATTCTTT
** * * * ** * * * * * * * ***
65622 TCATGATAAGGCACCATAAAC-TTTGTCTTCTCA-AAAGGATACACGATTATTGATGCTTTGGAT
244 TTGTGATTAGGGACTATAAACACAT-TCTCCTCATTAA-GATAAATGA-TATTCACGATTTTCTT
* * * * * * * * * *
65685 TCGTA-AGAAAGGC-TTTC-TTGTCACCAATTTT--TGTAA-AGTCTAAGTTCGTGCTCA-AATG
306 TTGCATGGAAA-TCTTTTCTTTG-C-CCCATTTTCCT-TAATA-TCAAAATTCAT-CCCATAATT
* ** * * * * * * * *
65743 A-GACAAAC-GAGCATTCTAGTAATGA-TCTTCATTCTTTTTGTGATTAGGCACGGT-A-AACAC
365 ATGACAAGCTTCG-ATTCTCGTAA-GAGGCTCCATGCTTTTCGAGATT-GGGA-GCTAAGAACAC
* * * * * * ** * * * * *
65803 ATTCTCC-TCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-
426 ATTC-CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTT-CCA
* *** ** * * * * * ** * *
65866 CCATTTTCCTTA-ATA-TCAAAAG-TCATCCCGTAATTATGACAAGCTTCG-ATTCTC--GCAAG
489 CCGTTTTTGATAGA-AGT--AAAGTTTGTCTCTTAAATAAGACAAAC-AAGAATTGTCATGCTA-
* * * * * * * * *
65925 AGGCTCCATGCTTTTCGA-GATT-GGGAGC-TAAGAGCACAT-TC-CCTTCATAAGGATACATGA
549 A-TCCCCATTCTTTTC-ATGATTAGGCACCAT-A-A--ACTTGTCTTC-TCATAAGAATACACGA
* * * * * * *
65985 -CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAG
607 TTATTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGT-CACCAATTTTTG-TA-AAGTCTAAG
* * *
66046 TTTGT-CTCTTAAAT---A-AGAC-A--A----A--CAAG---------C--------A-T---G
668 TTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAGGG
* * * *
66076 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
732 ACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTC
* * * * * * *
66141 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
797 TTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTCGT
* * * *
66206 AAGAGGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGACA
862 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
66271 TTGATGCTTTGGTGTCGCAAGAAAATG
927 TTGATGCTTTGGTGTCGCAAGAAAATG
* * * *
66298 TTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTCTCATAAATATGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
66363 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
*
66428 -TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * **
66492 TGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTACATTCTTTTTGTGATTAGGCACGGT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * *
66557 AAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* * *
66622 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* *
66687 GCTCCATGCATTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
66752 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
* * * * * ** * ** *
66817 AATAAGACAAACAAG-CTTGAC-T-ATAA-ACACATTCTCCTCATTAGGATAAACGATATTCAT-
521 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCA-T--GAT-TA-GGCA-CCATA
* * * * * ** **
66877 GA-TTTTCTTTTGCATGGAA-ATCTTTTCTTTACGCTATT-TTCCTTG-TTATCAAAATTCATCC
580 AACTTGTCTTCT-CAT--AAGA---ATAC---ACG--ATTATT-GATGCTT-T---GGTT--T-C
* * * *
66938 GTAACTATGACAA-GCTTCGATTCTCGTAAGAGGCTCCATGCTTTTGGAGATTGGGAG-CTAAGA
626 GT-A--A-GA-AAGGC-T---TTCTTGT--CA--C-CAAT--TTTTGTA-A-----AGTCTAAG-
** * * * ** * * * * *
67001 ACACGTTCCATTCATAAGGATACATGACATTTATGCTTTTGGGTCGCAAGAAAATGTT--TTCTT
668 -TTCGTGCC--TCA-AATGAGACA--A-A-CGAGGATTCT-AGT--CAAG---ATCTTCATTCTT
** **** * ** * * * * ** * *
67064 TCCGCTG-TTTTTTA-TAGAAGTAAAGTT-TGTCTCA-TAA-AT--ACGACAAACAAGAATTGTC
719 TTTG-TGATTAGGGACTATAAACACA-TTCT-CCTCATTAAGATAAATGATATTCACG-ATTTTC
* *** * * * *** * ** * **
67122 --ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCAAAA-GGATACA
780 TTTTGC--AT-GGAAATCTCTTC-T--TT--GCCCCATTTTC-CT-TAATATCAAAATTAAT-C-
* ** * * * * *** * ** **
67184 CGAT-A-T-TG--ATTCTTTGGTT-TCGTAAGAAAGGCTTTCTTG-TCACCAATTTTTGTAAAGT
833 CCATAATTATGACAAGCTTCGATTCTCGTAAG--AGGC-TCCATGCTTTTCGA-GATTG-GGAG-
** * * * * * * *
67242 CTAAG--TTC-GTGCC-TCAAATGAGGGAAACGAGGATTCTAGTAATGATCTTTCTTTTTGTGAT
892 CTAAGAACACATTCCCTTC--AT-AAGGATAC-ATGA--C-A-T--TGA---TGC-TTTGGTG--
* ** **
67303 TAGGCACTATAAACA
941 T-CGCAAGA-AAATG
** * * ** * * ** * *
67318 CATTC--TCC-TC-ATTAGGATA-AACGATATTCACAATTT-TCTTTTGCAT-GGA-AATC----
1 TTTTCTTTCCACCGTTTTTGATAGAA-G-TA---A-AGTTTGTCTCTTAAATAAGACAAACAAGA
** ** *
67371 -TT-T--T-CTTTTCCCCATTTTCCTTAATATCAAAATTCA-TC-CCAT-AA-TTATGTCAAGCT
60 ATTGTCATGCTAATCCCCA--TT-CTT--T-TCATGATT-AGGCACCATAAACTT-TGT----CT
* * * * * * *** ** * *
67427 TCGATTCACGCAAGAGGCTCCATGCTT-TTCGA-G-ATTGGGAGC-TAA-AAACACATTCCCT-T
113 TC---TCA---TA-AGGATACACGATTATT-GATGCTTTGGTTTCGTAAGAAAGGC-TTTCTTGT
** *** * * * * ** *** *** * * *
67486 CATAAGGATACATG-ACATTC-ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCT
169 CACCA--ATTTTTGTAAAGTCTAAG--TTCGTG-C-C--TCAAATG-AGACAAACGA-GGATTCT
* * ** ** ** ** ** *
67549 -GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCA
224 AG-T--CA-TGATCTTCAT-TCTT---TTTG--TGATTAG--GGACTATAAACACATTCTCCTCA
* * * * * *
67613 TTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTA
277 TTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTA
* *** *
67678 TTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
342 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
*
67743 GATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
407 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* ** * * *
67808 AAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTCTCATAAATATGACAAACAAGA
472 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
67873 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTCCTCATAAGGAT
537 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGAAT
*
67938 ACACGA-TATTGATTCATTT-GTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
601 ACACGATTATTGATGC-TTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
* * *
68001 AAGTTTGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTAATTAG
665 AAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATTCTTTTTGTGATTAG
* * * * * *
68066 GCACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGAAAATC
730 GGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATC
* * * * *
68131 TTTTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAGGCTTCGATTATC
795 TCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTC
* * *
68196 GTAGGAGGCTCCATGCTTTTCGAGATTGGGAGGTAAGAACACATTCCATTCATAAGGATACATGA
860 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
*
68261 CATTGATGCTTTGGCGTCGCAAGAAAATG
925 CATTGATGCTTTGGTGTCGCAAGAAAATG
*
68290 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATGGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
68355 ATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCAT-AGGAATACACG
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGG-ATACACG
* ** *
68419 A-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCATAAATTTTTGTAAAGTTTAAGTTC
130 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* *
68483 GTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTTCATTTTTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* * *
68548 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCGTTTCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *** * * * *
68613 TTTCCTTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCGTAGGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* * * *
68678 GGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
68743 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGACTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
68808 AAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAAACTT
520 AAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-T
* *
68873 TGTCTTCTCATAAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACC
584 TGTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACC
*
68937 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGT-AATGATCTAC
649 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAA-GATCTTC
* ** * * *
69001 ATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTT
713 ATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTT
* *
69066 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
778 TCTTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTAT
* * * * *
69131 GTCAAGCTTCGATTCACGCAAGAGGCTCCATGCATTTCGAGATTGGGAGCTAAGAGCACATTCCC
843 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
69196 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
908 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* *
69242 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG-CTTGAC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * * ** * ** *** * ** * *
69306 -T-ATAA-ACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCAT--GGA-A-
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-T--TTGTCTTCT-CATAAGGATAC
** * * * * * * ** * * *
69364 ATCTTTTCTTTACGCTATT--TTCCTTATTATCAAAATTCATCCGTAACTATGACAAGCTTCGAT
127 A-CGATTATTGATGCT-TTGGTTTCGTA--A--GAAAGGC-T---T-TCT-TGTC-A-C--CAAT
* * * * * * * * * *** *
69427 TCTCGTAAGAGGCTCCATGCTT-TTG---GAGATTGGGAGCTAAGAAC-ACG-TTCCCTTCATAA
176 TTTTGTAA-A-G-TCTAAG-TTCGTGCCTCA-AATGAGA-C--A-AACGAGGATTCTAGTCATGA
** * * * * * * * ** * **** *
69486 GGATACATGACATTTATGCT--TTTGGGTCGCA-AGAAAATGTTTTCTTTCCGC-TGTTTTTTAT
232 -TCTTCAT-TC-TTTTTG-TGATTAGGGAC-TATA-AACA--CATTC--TCCTCAT-TAAGATAA
* * * ** ** * * *
69547 A-GA-AGTAAAG-TTTGTCTCATAAATACGACAAACAAGAATTGTCATGCTAAT-CCCCATTCTT
286 ATGATATTCACGATTT-TCTTTTGCAT-GGA-AATC-----TT-T--T-CT-TTGCCCCA---TT
* ** * * * ** * * *
69608 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGAT-ACACGATATTGATTCTTTGGTTT
335 TTC---CTTA-ATATCA-AAA---T-TCATCCCATAATTATGACAAGCT-TCGATTC-------T
* * *** * ** ** ** * * *
69672 CGTAAGAAAGGCTTTCTTG-TCACCAATTTTTGTAAAGTCTAAG--TTC-GTGCC-TCAAATGAG
383 CGTAAG--AGGC-TCCATGCTTTTCGA-GATTG-GGAG-CTAAGAACACATTCCCTTC--AT-AA
* * * * * ** ****
69732 GGAAACGAGGATTCTAGTAATGATCTTTCTTTTTGTGATTAGGCACTATAAACACATTC--TCC-
439 GGATAC-ATGA--C-A-T--TGA---TGC-TTTGGTG--T-CGCAAGA-AAATGTTTTCTTTCCA
* * ** * * ** * *
69794 TC-ATTAGGATA-AACGATATTCACAATTT-TCTTTTGCAT-GGA-AATC-----TT-T--T-CT
489 CCGTTTTTGATAGAA-G-TA---A-AGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCT
* ** * *
69845 -TTGCCCCATTTTCCTTAATATCAAAATTCA-TC-CCAT-AATTATGTCAAGCTTCGATTCATGC
548 AAT-CCCCA--TT-CTT--T-TCATGATT-AGGCACCATAAACT-TGT----CTTC---TCAT--
* * * * * *** * * * ** *
69906 AAGAGGCTCCATGCTT-TTCGA-G-ATTGGGAGC-TAAG--AGCACATTCCCT-TCATAAGGATA
595 AAGA--ATACACGATTATT-GATGCTTTGGTTTCGTAAGAAAG-GC-TTTCTTGTCACCA--ATT
** * * * * ** *** *** * * * *
69964 CATG-ACATTC-ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCT-GATAGAAGT
653 TTTGTAAAGTCTAAG--TTCGTG-C-C--TCAAATG-AGACAAACGA-GGATTCTAG-T-CAAG-
** ** ** ** ** * *
70026 AAAGTTTGTCTCTTAAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCATTAGGATAAA
707 -ATCTTCAT-TCTT---TTTG--TGATTAG--GGACTATAAACACATTCTCCTCATTAAGATAAA
* * * * * * *
70091 CGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAAT
763 TGATATTCACGATTTTCTTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAAT
* *** *
70156 TCATCTTGTAACTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGC
828 TAATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGC
* *
70221 TAAGAACACGTTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGG
893 TAAGAACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
** * * *
70282 TTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTCTCATAAATATGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
70347 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTCCTCATAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* *
70412 -TATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
70476 CGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTAATTAGGCACTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * * * * *
70541 AAACACATTCTCCTCTTTAGGATAAACGATATTAATGATTTTCTTTTGCATGAAAATCTTTTCTT
261 AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * *
70606 TGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAGGCTTCGATTATCGTAGGAG
326 TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
*
70671 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
* *
70736 GCTTTGGCGTCGCAAGAAAATGTTTTTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
* *
70801 AATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACTTT
521 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TT
* * **
70866 GTCTTCTCATAGGAATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCATAA
585 GTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCA
* * *
70930 ATTTTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTTCAT
650 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCAT
* * *
70995 TTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTC
715 TCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTC
* * ** * * *
71060 TTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCTATAATTATGG
780 TTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGA
* *
71125 CAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTT
845 CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTT
* * *
71190 CATAAGGGTACAAGACATTGATGCTTTGGCGTCGCAAGAAAATG
910 CATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* *
71234 TTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG-CTCTTAAATAATACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
71298 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCAAAAGGATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
* *
71363 TTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATGTCACCAATTTTTGTAAAGTCTAAGTTCG
131 TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
71428 TGCCTCAAATGAGACAAACGAGTATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCA-TGG
196 TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACT-A
* * **
71492 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
71557 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTCTGACAAGCTTCGATTCACGTAAGA
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* *
71622 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAGACATTCCCTTCATAAGGATACACGACATTGA
390 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * * *
71687 TGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
* * * * * * **
71752 AAATAAGACAAACAAGCA-TGAC-T-ATAA-ACACATTC--TCCCCG-TTAGG----ATAAAC--
520 AAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTT
* * * * * *
71804 G-------AT----ATTCAGGA-T-TT--T-C-TT--TTGCAT-GGAAA-TCTTTTCTT-T-ACG
585 GTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGC-TTTCTTGTCAC-
* * * *** * * *** *
71846 CTATTTTCCT-TAATA-TCAAAATTCAACCCGTAACAAT--GACAAGCTTCGATTCTCGT-AAGA
648 CAATTTT--TGTAA-AGTCTAAGTTCGTGCC-TCA-AATGAGACAAACGAGGATTCTAGTCAAGA
* ** * * * * * * * * *
71906 GGCCCCATGCTTTTCGAGATT-GGGAGCTA-AGAACACGTTC-CCTTAATGAGGATACATGACAT
708 -TCTTCATTCTTTTTGTGATTAGGGA-CTATA-AACACATTCTCC-TCATTAAGATAAATGATAT
* * * ** * * * * * * * ** * *
71968 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTT-CCGCCGGTTTT-GATAGA-AGT-AAAGTTT
769 TCACGATTTTCTTTTGCATGGAAATCTCTTCTTTGCC-CC-ATTTTCCTTA-ATA-TCAAAATTA
* * * * * * ** * * *** ** * * *
72029 GTCTCTTAAATAAGACAAAC-AAGAATTGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-
830 ATCCCATAATTATGACAAGCTTCG-ATTCTCGTAAGAGGCTCCATGCTTTTCGA-GATT-GGGAG
* * * * * * * * * * * *
72091 C-CATAA-ACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGTAAG-AAAGG
892 CTAAGAACACATT-CCCT-TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * ** * * * *
72152 CTTTCTTGT-CACCAATTTTTG-TA-AAGTCTTAGTTCGTGC-CTCAAA-AGAGACAAACGAGGA
1 TTTTCTT-TCCACC-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATA-AGACAAACAAGAA
* ** * ** ** * * ** * *
72212 TTCT-AGTAATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACAT-TCTCCTCATTAGGA
61 TTGTCA-TGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGA
* * * * ** * * * * * *
72275 TAAACGA-TATTCACGATTTTCTTTTGCAGGGAAA-TCTTTTCTTTTC-CC--TTTTTCCTTAAT
124 TACACGATTATTGATGCTTTGGTTTCGTA-AGAAAGGC-TTTCTTGTCACCAATTTTT--GTAA-
* * * * * * * * * * ** *
72335 A-TCAAAATTCAT-CC-CATAATTATGGCAAGC-ATCGATTCTCGT-AGGAGGCACCATTCTTTC
184 AGTCTAAGTTCGTGCCTCA-AATGA-GACAAACGA-GGATTCTAGTCATGA-TCTTCATTCTTTT
* * * * * * * * * ** *
72395 CGAGATT-GGGAGCTA-AGAACACATTC-CATTCA-TAAGGGTACATGACATTGATGCTTTGGTG
245 TGTGATTAGGGA-CTATA-AACACATTCTC-CTCATTAA-GATAAATGATATTCACGATTTTCTT
* * * * * * * ** * * * *
72456 TCGCAAGAAAATGTTTTCTTT-CCACCGTTTT--TTATAGAAGT-AAAGTTTGTCTCTTAAATAA
306 TTGCATGGAAATCTTTTCTTTGCC-CCATTTTCCTTA-A-TA-TCAAAATTCATCCCATAATTAT
* ** * * *** ** * * * * * *
72517 GACAAAC-AAGAATTGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-C-CATAA-ACTTT
367 GACAAGCTTCG-ATTCTCGTAAGAGGCTCCATGCTTTTCGA-GATT-GGGAGCTAAGAACACATT
* * * * * * * * *
72577 GTCTTCTCATAAGGATACACGATATTGAAT-CTTTGCTTTCGAAAG-AAAGGCTTTCTTGT-CAC
429 -CCCT-TCATAAGGATACATGACATTG-ATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCAC
* * * * * * * *
72639 CAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCT-A-G-TAATG
490 C-GTTTTTGATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGAATTGTCATGCTAA--
** ** ** * * * * *
72698 TTCTTCATTCTTTTTGTGATTAGGCACGGTAAACACAT-TCTCCTCATTAGGATAAACGA-TATT
550 -TCCCCATTCTTTTCATGATTAGGCACCAT-AA-ACTTGTCTTCTCATAAGAATACACGATTATT
* * * ** * * * ** * * * *
72761 CACGATTTTCTTTTGCATGAAAATCTTTTCTT-TGC-CCCATTTTCCT-TAATA-TCAAAATTCA
612 GATGCTTTGGTTTCGTAAGAAAGGC-TTTCTTGT-CACCAATTTT--TGTAA-AGTCTAAGTTCG
* * * *** * * * * *
72822 T-CC-CAAAATTATTACAAGCTTCGATTC-ACGT-AAGAGGCTCCATGCTTTTCGAGATT-GGGA
672 TGCCTC-AAATGA-GACAAACGAGGATTCTA-GTCAAGA-TCTTCATTCTTTTTGTGATTAGGGA
* * * * * * * ** * *
72882 GCT-TAGAGCACATTC-CCTTCA-TAAGGATACACGACATTGATGCTTTGGTGTCGCAAT--AAA
733 -CTATA-AACACATTCTCC-TCATTAA-GATAAATGATATTCACGATTTTCTTTTGC-ATGGAAA
* *** * *
72942 T-T-GT-TTT-----A-TTTCC-----A-C-CGGTT--T-TCATAGA--A-GTA-AAG-TTTG--
793 TCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATA-ATTATG-ACAAGCTTCGAT
* * ***** * * * *
72981 TCTCTTAA-A---T--AAGAGAAACAAGCA-T--GA-CTATA-AACACATTCCCCTCATTATGAT
856 TCTCGTAAGAGGCTCCATGCTTTTCGAG-ATTGGGAGCTA-AGAACACATTCCCTTCATAAGGAT
* * * * * * ** * * * * *
73035 AAACGATATTCACGATTTTCTTTTGCATGGAAATC
919 ACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
*** ** *** ** * * * ****
73070 TTTTCTTTATGCTATTTTCCTTA-ATA-TCCAAA-TTCATC-CTGTAACTATGACAAGCTTCTAT
1 TTTTCTTTCCACCGTTTTTGATAGA-AGT--AAAGTTTGTCTCT-TAAATAAGACAAACAAGAAT
* * *** ** * * * * * ** *
73131 TCTCGTAAGAGGCTCCATGCTTTTCGA-GATT-GGGAGCTAAAAACACAT-TC-CCTTCATAAGG
62 TGTCATGCTAATCCCCATTCTTTTC-ATGATTAGGCA-CCATAAAC-TTTGTCTTC-TCATAAGG
* * * * * * * *
73192 ATACATGA-CATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTT-TCCATC-GTTTTTGATAGA
123 ATACACGATTATTGATGCTTTGGTTTCGTAAG-AAAGGCTTTCTTGT-CACCAATTTTTG-TA-A
* * * *
73254 AG-CAAAGTTTGT-CTCTTAAATAAGAC--A--A--A--C-A---A-G-----CA---------T
184 AGTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGT
* * *
73290 G--T-----CTATAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATG
248 GATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATG
* * * * *** *
73348 GAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCG
313 GAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCG
*
73413 ATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGAT
378 ATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGAT
*
73478 ACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAA
443 ACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAA
*
73543 AGTTTGTCTCTTACATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGG
508 AGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGG
* * * * *
73608 CACCATAAACTTTGTCTCCTCATAAGGATACACGA-TATTTATTCTTTTGTTTCGTAAGAAAGGC
573 CACCATAAAC-TTGTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGC
73672 TTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAG
637 TTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAG
* * * * * *
73737 TCATGATCTTCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAACGAT
702 TCAAGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGAT
* * * *
73802 ATTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCATTAATATCAAAATTCAT
767 ATTCACGATTTTCTTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAAT
* * *
73867 CCCATAATTATGACAGGCTTCGATTATCGTAGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAG
832 CCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAG
*
73932 AACACATTCCATTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
897 AACACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
*
73989 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATGGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
*
74054 ATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCAT-AGGAATACACG
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGG-ATACACG
* * * **
74118 -GTATTGATTCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCATAAATTTTTGTAAAGTCTAAGTTC
130 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
*
74182 GTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTTCATT-TTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
74246 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
260 TAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* ** * * *
74311 TTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCTCAG-AAG
325 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTC-GTAAG
** *
74375 AGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGACATTG
389 AGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTG
* * * *
74440 ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGTCTCT
454 ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCT
* *
74505 TAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACT
519 TAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAAC-
* * * *
74570 TTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATGTCAC
583 TTGTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCAC
*
74635 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGTATTCTAGT-AATGATCTT
648 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAA-GATCTT
* * * *
74699 CATTCTTTTTGTGATTAGGCA-TGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
712 CATTCTTTTTGTGATTAGGGACT-ATAAACACATTCTCCTCATTAAGATAAATGATATTCACGAT
** * *
74763 TTTCTTTTGCACAGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATT
776 TTTCTTTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATT
* * *
74828 CTGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAGACATTC
841 ATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTC
* *
74893 CCTTCATAAGGATACACGACATTGATGCTTTGGTGTCGCAATAAAATG
906 CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
* * *
74941 TTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTTAAATAAGACAAACAAG
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
74999 CATGACTATA
Statistics
Matches: 18421, Mismatches: 3627, Indels: 3247
0.73 0.14 0.13
Matches are distributed among these distances:
881 5 0.00
882 14 0.00
883 135 0.01
884 147 0.01
885 609 0.03
886 291 0.02
887 32 0.00
888 2 0.00
889 8 0.00
890 8 0.00
892 3 0.00
894 1 0.00
895 9 0.00
896 2 0.00
897 1 0.00
900 2 0.00
901 10 0.00
902 3 0.00
904 5 0.00
905 5 0.00
906 2 0.00
907 11 0.00
908 13 0.00
909 1 0.00
910 5 0.00
911 5 0.00
912 3 0.00
913 2 0.00
914 3 0.00
915 17 0.00
916 57 0.00
917 298 0.02
918 823 0.04
919 1319 0.07
920 272 0.01
921 42 0.00
922 17 0.00
923 12 0.00
924 12 0.00
925 11 0.00
926 10 0.00
927 19 0.00
928 13 0.00
929 19 0.00
930 27 0.00
931 98 0.01
932 520 0.03
933 990 0.05
934 232 0.01
935 53 0.00
936 24 0.00
937 8 0.00
938 13 0.00
939 15 0.00
940 7 0.00
941 12 0.00
942 18 0.00
943 16 0.00
944 10 0.00
945 16 0.00
946 21 0.00
947 20 0.00
948 314 0.02
949 76 0.00
950 1147 0.06
951 2518 0.14
952 4574 0.25
953 603 0.03
954 343 0.02
955 426 0.02
956 8 0.00
957 2 0.00
958 4 0.00
959 11 0.00
960 10 0.00
961 1 0.00
962 3 0.00
963 22 0.00
964 14 0.00
965 12 0.00
966 14 0.00
967 20 0.00
968 25 0.00
969 37 0.00
970 28 0.00
971 42 0.00
972 41 0.00
973 23 0.00
974 14 0.00
975 14 0.00
976 26 0.00
977 22 0.00
978 11 0.00
979 17 0.00
980 17 0.00
981 5 0.00
982 8 0.00
983 16 0.00
984 3 0.00
985 8 0.00
986 26 0.00
987 20 0.00
988 31 0.00
989 26 0.00
990 17 0.00
991 27 0.00
992 13 0.00
993 14 0.00
994 26 0.00
995 13 0.00
996 7 0.00
997 9 0.00
998 24 0.00
999 23 0.00
1000 13 0.00
1001 20 0.00
1002 20 0.00
1003 23 0.00
1004 33 0.00
1005 18 0.00
1006 27 0.00
1007 7 0.00
1008 4 0.00
1009 24 0.00
1010 11 0.00
1011 8 0.00
1012 17 0.00
1013 15 0.00
1014 13 0.00
1015 22 0.00
1016 32 0.00
1017 13 0.00
1018 14 0.00
1019 26 0.00
1020 43 0.00
1021 40 0.00
1022 30 0.00
1023 39 0.00
1024 30 0.00
1025 18 0.00
1026 13 0.00
1027 14 0.00
1028 14 0.00
1029 22 0.00
1030 3 0.00
1031 9 0.00
1032 10 0.00
1033 14 0.00
1034 2 0.00
1035 1 0.00
1036 6 0.00
1038 12 0.00
1039 7 0.00
1040 519 0.03
1041 26 0.00
1042 11 0.00
1043 15 0.00
1044 30 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (953 bp):
TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGA
TTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT
AAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTG
TCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAA
TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCAAGATCTTCATT
CTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCT
TTTGCATGGAAATCTCTTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGAC
AAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTC
ATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATG
Found at i:55221 original size:299 final size:298
Alignment explanation
Indices: 54660--55264 Score: 996
Period size: 299 Copynumber: 2.0 Consensus size: 298
54650 CAAGAAAATG
* *
54660 TTTTC-TTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
1 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
*
54724 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
66 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
* * * *
54789 ATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
131 ATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTCG
* * * *
54854 TGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGATTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * *
54919 AAACACATTCTTCTCATTAAGATAAATGATATTCACGA
261 AAACACATTCTCCTCATTAAGATAAACGATATTCACAA
54957 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
1 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
* *
55022 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-
* * *
55087 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTC
130 AATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTC
*
55152 GTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
55217 TAAACACATTCTCCTCATTAGGATAAACGATATTCGCAA
260 TAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
55256 TTTTCTTTT
1 TTTTCTTTT
55265 GCATGGAAAT
Statistics
Matches: 284, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
297 5 0.02
298 118 0.42
299 161 0.57
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (298 bp):
TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
ATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTAT
AAACACATTCTCCTCATTAAGATAAACGATATTCACAA
Found at i:55679 original size:774 final size:774
Alignment explanation
Indices: 54184--55739 Score: 2621
Period size: 774 Copynumber: 2.0 Consensus size: 774
54174 CAAGAAAATG
*
54184 TTTTC-TTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGT
1 TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
*
54248 CATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
* * * *
54313 ATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCG
131 ATATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTCG
* *
54378 TGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGAT
196 TGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGAT
*
54443 AAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCTT
* ** *
54508 TTCCCTTTTTTCCTTAATGTCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
326 TGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
*
54573 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
* *
54638 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
* *
54703 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTT
521 AATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTT
*
54768 GTCTTCTCATAAGAATACACAATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAA
586 GTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCAA
* * ** *
54833 TTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATT
651 TTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATT
* * * *
54898 CTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAAGATAAATGATATTCACGA
716 CTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
* *
54957 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
1 TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
* * *
55022 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
* * *
55087 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTC
131 A-TATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTC
* * * *
55152 GTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGA
*
55217 TAAACACATTCTCCTCATTAGGATAAACGATATTCGCAATTTTCTTTTGCATGGAAATCTTTTCT
260 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
55282 TTGCCC-CATTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGA
325 TTGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGA
*
55346 GGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATCCATGACATTGA
390 GGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
55411 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
55476 AAATAAGACAAAAAAGAATTGTCATGCTAGTCCCCATTCTTTTCATGATTAAGCACCATAAACTT
520 AAATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTT
* *
55541 TGTCTTCTCATAAGAATACACGATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCA
585 TGTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCA
*
55606 ATTTTTATGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCAT
650 ATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCAT
* * *
55671 TGTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAA
715 TCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
55731 TTTTCTTTT
1 TTTTCTTTT
55740 GCATGGAAAT
Statistics
Matches: 729, Mismatches: 52, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
773 5 0.01
774 541 0.74
775 183 0.25
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (774 bp):
TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
ATATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGAT
AAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
GCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
AATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTT
GTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCAA
TTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATT
CTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
Found at i:56946 original size:299 final size:298
Alignment explanation
Indices: 56385--56989 Score: 996
Period size: 299 Copynumber: 2.0 Consensus size: 298
56375 CAAGAAAATG
* *
56385 TTTTC-TTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
1 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
*
56449 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
66 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
* * * *
56514 ATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
131 ATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTCG
* * * *
56579 TGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGATTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * *
56644 AAACACATTCTTCTCATTAAGATAAATGATATTCACGA
261 AAACACATTCTCCTCATTAAGATAAACGATATTCACAA
56682 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
1 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
* *
56747 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-
* * *
56812 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTC
130 AATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTC
*
56877 GTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
56942 TAAACACATTCTCCTCATTAGGATAAACGATATTCGCAA
260 TAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
56981 TTTTCTTTT
1 TTTTCTTTT
56990 GCATGGAAAT
Statistics
Matches: 284, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
297 5 0.02
298 118 0.42
299 161 0.57
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (298 bp):
TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
ATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTAT
AAACACATTCTCCTCATTAAGATAAACGATATTCACAA
Found at i:57404 original size:774 final size:774
Alignment explanation
Indices: 55909--57464 Score: 2621
Period size: 774 Copynumber: 2.0 Consensus size: 774
55899 CAAGAAAATG
*
55909 TTTTC-TTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGT
1 TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
*
55973 CATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
* * * *
56038 ATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCG
131 ATATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTCG
* *
56103 TGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGAT
196 TGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGAT
*
56168 AAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCTT
* ** *
56233 TTCCCTTTTTTCCTTAATGTCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
326 TGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
*
56298 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
* *
56363 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
* *
56428 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTT
521 AATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTT
*
56493 GTCTTCTCATAAGAATACACAATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAA
586 GTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCAA
* * ** *
56558 TTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATT
651 TTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATT
* * * *
56623 CTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAAGATAAATGATATTCACGA
716 CTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
* *
56682 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
1 TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
* * *
56747 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
* * *
56812 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTC
131 A-TATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTC
* * * *
56877 GTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGA
*
56942 TAAACACATTCTCCTCATTAGGATAAACGATATTCGCAATTTTCTTTTGCATGGAAATCTTTTCT
260 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
57007 TTGCCC-CATTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGA
325 TTGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGA
*
57071 GGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATCCATGACATTGA
390 GGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
57136 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
57201 AAATAAGACAAAAAAGAATTGTCATGCTAGTCCCCATTCTTTTCATGATTAAGCACCATAAACTT
520 AAATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTT
* *
57266 TGTCTTCTCATAAGAATACACGATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCA
585 TGTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCA
*
57331 ATTTTTATGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCAT
650 ATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCAT
* * *
57396 TGTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCGCAA
715 TCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
57456 TTTTCTTTT
1 TTTTCTTTT
57465 GCATGGAAAT
Statistics
Matches: 729, Mismatches: 52, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
773 5 0.01
774 541 0.74
775 183 0.25
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (774 bp):
TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
ATATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGAT
AAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
GCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
AATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTT
GTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCAA
TTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATT
CTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
Found at i:58671 original size:299 final size:298
Alignment explanation
Indices: 58110--58714 Score: 996
Period size: 299 Copynumber: 2.0 Consensus size: 298
58100 CAAGAAAATG
* *
58110 TTTTC-TTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
1 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
*
58174 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
66 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
* * * *
58239 ATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCG
131 ATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTCG
* * * *
58304 TGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGATTAT
196 TGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTAT
* * *
58369 AAACACATTCTTCTCATTAAGATAAATGATATTCACGA
261 AAACACATTCTCCTCATTAAGATAAACGATATTCACAA
58407 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
1 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
* *
58472 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-
* * *
58537 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTC
130 AATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTC
*
58602 GTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
58667 TAAACACATTCTCCTCATTAGGATAAACGATATTCGCAA
260 TAAACACATTCTCCTCATTAAGATAAACGATATTCACAA
58706 TTTTCTTTT
1 TTTTCTTTT
58715 GCATGGAAAT
Statistics
Matches: 284, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
297 5 0.02
298 118 0.42
299 161 0.57
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (298 bp):
TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACA
ATATTGATGCTCTGGTTTCGTAAGAAAAGCTTTCATGTCACCAAATTTTGTAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTAT
AAACACATTCTCCTCATTAAGATAAACGATATTCACAA
Found at i:59129 original size:774 final size:774
Alignment explanation
Indices: 57634--59189 Score: 2621
Period size: 774 Copynumber: 2.0 Consensus size: 774
57624 CAAGAAAATG
*
57634 TTTTC-TTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGT
1 TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
*
57698 CATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
* * * *
57763 ATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCG
131 ATATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTCG
* *
57828 TGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGAT
196 TGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGAT
*
57893 AAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTT
261 AAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCTT
* ** *
57958 TTCCCTTTTTTCCTTAATGTCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
326 TGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
*
58023 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
391 GCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
* *
58088 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTA
456 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
* *
58153 AATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTT
521 AATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTT
*
58218 GTCTTCTCATAAGAATACACAATATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAA
586 GTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCAA
* * ** *
58283 TTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATT
651 TTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATT
** * **
58348 CTTTTTGTGATTAGGGATTATAAACACATTCTTCTCATTAAGATAAATGATATTCACGA
716 CTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAAGATAAACAATATTCACGA
* *
58407 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
1 TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
* * *
58472 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACG
66 CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
* * *
58537 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTC
131 A-TATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTC
* * * *
58602 GTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
195 GTGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGA
*
58667 TAAACACATTCTCCTCATTAGGATAAACGATATTCGCAATTTTCTTTTGCATGGAAATCTTTTCT
260 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
58732 TTGCCC-CATTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGA
325 TTGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGA
*
58796 GGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATCCATGACATTGA
390 GGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
58861 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTT
455 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
58926 AAATAAGACAAAAAAGAATTGTCATGCTAGTCCCCATTCTTTTCATGATTAAGCACCATAAACTT
520 AAATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTT
* *
58991 TGTCTTCTCATAAGAATACACGATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCA
585 TGTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCA
*
59056 ATTTTTATGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCAT
650 ATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCAT
* *
59121 TGTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAGGATAAACAATATTCACGA
715 TCTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAAGATAAACAATATTCACGA
59181 TTTTCTTTT
1 TTTTCTTTT
59190 GCATGGAAAT
Statistics
Matches: 729, Mismatches: 52, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
773 5 0.01
774 541 0.74
775 183 0.25
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (774 bp):
TTTTCTTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTAT
CATGCTAATCCCCAATCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACG
ATATTGATGCTCTAGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTATAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACAAGGATTCTAGACACGATCTTCATTCTTTTTGTGATTAGGGACGAT
AAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCTCATTTCCTTAATATCAAAATTCATCCCATAATTACGACAAGCATCGATTCTCGTAAGAG
GCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTA
AATAAGACAAAAAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTT
GTCTTCTCATAAGAATACACAATATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCATGTCACCAA
TTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATT
CTTTTTGTGATTAGGGACGATAAACACATTCTCCTCATTAAGATAAACAATATTCACGA
Found at i:59928 original size:475 final size:476
Alignment explanation
Indices: 58407--60845 Score: 3932
Period size: 476 Copynumber: 5.1 Consensus size: 476
58397 ATATTCACGA
*
58407 TTTTCTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTAT
1 TTTTC-TTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
* * *
58472 CATGCTAATCCCCAATCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTTATAAGGATACACG
65 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACAC-
* * * *
58537 ATTATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTTGTCACCAAATTTTGTAAAGTCTAAGTTC
129 AATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* * *
58602 GTGCCTCAAATGAGGCAAACGAGGATTCTAGCCACGATCTTCATTCTTTTTGTGATTAGGGACTA
194 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* *
58667 TAAACACATTCTCCTCATTAGGATAAACGATATTCGCAATTTTCTTTTGCATGGAAATCTTTTCT
259 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
58732 TTGCCCC-ATTTCCTTAATATCAAAATTCATCTCATAATTATGACAAGCTTCGATTCTCGTAAGA
324 TTGCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* *
58796 GGCTCCATGCTTTTCGACATTGGGAGCTAAGAACACATTCCCTTCATAAGGATCCATGACATTGA
389 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
58861 TGCTTTGGTGTCGCAAGAAAATG
454 TGCTTTGGTGTCGCAAGAAAATG
* *
58884 TTTTCTTTCCACAGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
* * *
58949 ATGCTAGTCCCCATTCTTTTCATGATTAAGCACCATAAACTTTGTCTTCTCATAAGAATACACGA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACAA
* * * *
59014 TATTGATTCTCTAGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTATGAAGTCTAAGTTCGT
131 TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * *
59079 GCCTCAAATGAGACAAACAAGGATTCTAGACATGATCTTCATTGTTTTTGTGATTAGGGACGATA
196 GCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATA
*
59144 AACACATTCTCCTCATTAGGATAAACAATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTT
261 AACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * * *
59209 TCCCTTTTTTCCTTAATGTCAAAATTCTTCCCATAATTACGACAAGCATCGATTCTCGTAAGAGG
326 GCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGG
59274 CTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATG
391 CTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATG
59339 CTTTGGTGTCGCAAGAAAATG
456 CTTTGGTGTCGCAAGAAAATG
*
59360 TTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
59425 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACAA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACAA
* * *
59490 TATTGATTCTCTGGTTTCGTAAGAAAGGCTTTCATGTCACCAATTTTTGTAAAGTCTATGTTCGT
131 TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGT
* *
59555 GCCTCAAATGAGACAAATGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGATTATA
196 GCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATA
* * *
59620 AACACATTCTCCTCATTAAGATAAATGATATTCACGATTTTCTTTTGCATGGAAATC-TTTCATT
261 AACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTT
* *
59684 GCCCCTTTTTCCTTAATATCAGAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTTAGAGG
326 GCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGG
* *
59749 CTCCATGCTTTTCAAGATTGGGAGCTAAGAACACATTCCCTTCGTAAGGATACATGACATTGATG
391 CTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATG
59814 CTTTGGTGTCGCAAGAAAATG
456 CTTTGGTGTCGCAAGAAAATG
*
59835 TTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
59900 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACAA
66 ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACAA
* * *
59965 TATTGATTCTTTGGTTTCGTAAGAAAGGATTTCTTGTCACCAATTTTTGTAAAGTCTAAATTTGT
131 TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGT
**
60030 GCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCAATTTGTGATTAGGGACTATA
196 GCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATA
* * *
60095 AACACATTCTCCTCTTTAGGATAAACGGTATTCATGATTTT-TTGTTGCATGGAAATCTTTTCTT
261 AACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTT-TTGCATGGAAATCTTTTCTT
* * * * * * * *
60159 TTCACTTTTTTCCTTAATATCAAAATTCATCCCCTAATTATGGCAAGCATCGATTCTCCTATGAG
325 TGCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAG
* * * *
60224 GCTCCATTCTTTTCGAGATTGGGAGATAAGAACACATTCCCTTCATAAGGGTACACGACATTGAT
390 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGAT
60289 GCTTTGGTGTCGCAAGAAAATG
455 GCTTTGGTGTCGCAAGAAAATG
*
60311 TTTTCTTTCCACCGTTTTTTG-TAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAACAATTGT
1 TTTTCTTTCCACCG-TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGT
* * * *
60375 CATGCTAATCCCCATTCTTTTCATGAATAGGCACCATAAACTTTGTCTTCTCAAAAGGATACATG
65 CATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACA-C
* * * *
60440 ATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCTCCAATTTTTCTAAAGTCTAAGTTC
129 AATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTC
* * *
60505 TTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGGTTAGGGACTA
194 GTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTA
* * * *
60570 AAAACACATTCTCCTCATTAGGAGAAACGATATTCACAATTTTCTTTTGCAGGGAAATCTTTTCT
259 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * * *
60635 TTGCCTCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACCAGCTTCGATTCACGTAAGA
324 TTGCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGA
* * *
60700 GGCTCCATGCTTTTCGAGATTGGGAGCTATGAGCACATTCCCTTCATAAGGATACACGACATTGA
389 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
*
60765 TGCTTTGGTGTCGCAAGAAAAAG
454 TGCTTTGGTGTCGCAAGAAAATG
* *
60788 TTTTCTTTCCACCGTTTTTCATTGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
1 TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
60846 CATGACTATA
Statistics
Matches: 1810, Mismatches: 145, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
474 2 0.00
475 628 0.35
476 810 0.45
477 368 0.20
478 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
TTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTC
ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACAA
TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGT
GCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATA
AACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTT
GCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGG
CTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAATG
Found at i:61553 original size:760 final size:761
Alignment explanation
Indices: 60088--63125 Score: 3196
Period size: 760 Copynumber: 4.0 Consensus size: 761
60078 TGTGATTAGG
* * *
60088 GACTATAAACACATTCTCCTCTTTAGGATAAACGGTATTCATGATTTT-TTGTTGCATGGAAATC
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTGTTGCATGGAAATC
* * * * *
60152 TTTTCTTTTCA-CTTTTTTCCTTAATATCAAAATTCATCCCCTAATTATGGCAAGCATCGATTCT
66 TTTTC-TTTCACCTATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCT
* * * * *
60216 CCTATGAGGCTCCATTCTTTTCGAGATTGGGAGATAAGAACACATTCCCTTCATAAGGGTACACG
130 CGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATG
60281 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTG-TAGAAGTAAAGTT
195 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG-TTTTTGATAGAAGTAAAGTT
* * * *
60345 TGTCTCTTAAATAAGACAAACAACAATTGTCATGCTAATCCCCATTCTTTTCATGAATAGGCACC
259 TGCCTATTAAATAAGACAAACAACAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACC
* *
60410 ATAAACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTC
324 ATAAACTTTGTCTTCTCATAAGGATACACGA-TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTC
* * * *
60475 TTGTCTCCAATTTTTCTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACGAGGATTCTAGTAAT
388 TTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAAT
* * * *
60540 GATCTTCATTCTTTTTGTGGTTAGGGACTAAAAACACATTCTCCTCATTAGGAGAAACGATATTC
453 GATCTTCATTCTTTTTGCGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
* * *
60605 ACAATTTTCTTTTGCAGGGAAATCTTTTC-TTTGCCTCATTTTCCTTAATATCAAAATTCATCCC
518 ACGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCT-ATTTTCCTTAATATCAAAATTCATCCC
* * * *
60669 ATAATTATGACCAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTATGAGC
582 ATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAC
*
60734 ACATTCCCTTCATAAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCA
647 ACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCA
* *
60799 CCGTTTTTCATTGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
712 CCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
60849 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTT-TTGCATGGAAATC
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTGTTGCATGGAAATC
* * *
60913 TTTTATTT-ACGTTATTTTCCTTAATAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCT
66 TTTTCTTTCAC-CTATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCT
* * *
60977 CGTAAGAGGCTGCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATG
130 CGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATG
* *
61042 ACATTAATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTGATAGAAGTAAAGTTT
195 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTT
* * *
61107 GCCTATTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCAATCTTATCATGATTCGGCACCA
260 GCCTATTAAATAAGACAAACAACAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACCA
* * * * * *
61172 TAAGCTTTGTCTTCTCGTAAGAATACAAGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTT
325 TAAACTTTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTT
*
61237 GTCACCAATTTTTGTAAAGTCTCAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
390 GTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * *
61302 CCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTCAC
455 TCTTCATTCTTTTTGCGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
* * *
61367 GATTTTCTTTTG-GTGGGAAATCTTTTCTTTTCCCTTTTTTCCTTAATATCGAAATTCATCCCAT
520 GATTTTCTTTTGCAT-GGAAATCTTTTCTTTTCCCTATTTTCCTTAATATCAAAATTCATCCCAT
* * * *
61431 AATTATGGCAAGCATCAATTCTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACAC
584 AATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACAC
* * * *
61496 ATTCCATTCATAAGGGTACATGACATTAATGCTTTGGTGTCGCAAGAAAACGTTTTCTTTCCACC
649 ATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACC
* *
61561 GTTTTTGATAGAAGTAAAGTTTGTCTCTAAAATAAGACAAACAAGAATT
714 GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCA-T
* * * * * * * *
61610 GTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTGTCATAAGGATACG
1 GAC-T-ATAA-ACACATTC---TCCTCATTAGG----ATAAA------C--G--AT----ATTCA
* * * ** * *
61675 CGATATTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTT--TGTAA-AGTCTAA
42 CG--ATT--TTC-TT-GTTGCAT-GGAAATCTTTTCTT-TCACCTATTTTCCT-TAATA-TCAAA
* * * *** * * * * *
61737 GTTCGTGCCTCA-AA-TGA-GACAAACGAGGATTCTAGTAATGA-TCTTCATTCTTTTTGTGATT
97 ATTCAT-CC-CATAACT-ATGACAAGCTTCGATTCTCGTAA-GAGGCTCCATTCTTTTCGAGATT
* * * * * * * * ** * * * *
61798 AGGCACGGT-A-AACACATTCTCC-TCATTAGGATAAATGATATTCACGATTTTCTTTTGCACGG
158 -GGGA-GCTAAGAACACATTC-CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * ** * * ** *
61860 AAATCTATTCTTTGCC-CCACTTTCCTTAATATCA--AAA-TTCAT-CCCA-TAATTCTGACAAG
220 AAATGTTTTCTTT-CCACC-GTTT--TTGATAGAAGTAAAGTT--TGCCTATTAAATAAGACAAA
** * * * * * * * * **
61919 CTTCGA-T-TCACG-TAAGAGGCTCC-ATGCTTTTCGA-GATT-GGGAGCTATGAGCACATTCCC
279 CAACAATTGTCATGCT-A-A-TCCCCAAT-CTTTTC-ATGATTAGGCA-CCAT-A-AACTTTGTC
* * * * * * *
61978 TT-T-ATAAGGATACACGACATTGATGCTTTGGTGTCGCAATAAAATGTTTTCTT-TCCACC-GT
336 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAA-GAAAGGCTTTCTTGT-CACCAAT
* * * * * *
62039 TTTTCATTGAAGT-AAAGTT--TGTCTC---T----TAAATAA-G-----AG-AA--A----CA-
399 TTTT--GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCAT
* * * *
62080 ------AGCG--T---GACTATAAACACATTCCCCTCATTATGATAAACGATATTCACGATGTTC
462 TCTTTTTGCGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTC
** * ** *
62134 TTTTGCATGGAAATCTTTT-TTTTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATG
527 TTTTGCATGGAAATCTTTTCTTTT-CCCTATTTTCCTTAATATCAAAATTCATCCCATAATTATG
*
62198 ACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCT
591 ACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCT
*
62263 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTG
656 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACCGTTTTTG
* *
62328 ATAGAAGCAAAGTTTGTCTCTTAAATAAGACAAATAAGCAT
721 ATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
* *
62369 GTCTATAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTT-TTGCATGGAAATC
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTGTTGCATGGAAATC
* * ***
62433 TTTTCTTT-ATGCTATTTTCCTTAATACCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCT
66 TTTTCTTTCA-CCTATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCT
* *
62497 CTTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATG
130 CGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATG
*
62562 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTT
195 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTT
* * * *
62627 GTCTCTTAAATAAGACAAACAACAATTGTCATGCTAATCCCCATTCTTTTCTTGATTAGGCACCA
260 GCCTATTAAATAAGACAAACAACAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACCA
62692 TAAACTTTGTCTTCTCATAAGGATACACGATATTGA-GTCTTTGGTTTCGTAAGAAAGGCTTTCT
325 TAAACTTTGTCTTCTCATAAGGATACACGATATTGATG-CTTTGGTTTCGTAAGAAAGGCTTTCT
* * * * * *
62756 TCTCACAAATTTTTGTAATGTCTAAGTTCGTGCCTTAAATGAGACAAACGAGGATTCTAGTCATG
389 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATG
* * * *
62821 ATCTTCATTCTTTTTGCAATTAGGCACTATAAACACGTTCTCCTCGTTAGGATAAACGATATTCA
454 ATCTTCATTCTTTTTGCGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCA
* * * *
62886 TGATTTTCTTTTGCATGGAAATCTTTCCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCAT
519 CGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCCTTAATATCAAAATTCATCCCAT
* *
62951 AATTATGATAAGCTTCGATTATCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACAC
584 AATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACAC
* *
63016 ATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATC
649 ATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACC
* *
63081 GTTTTTTATAGAAGTAAAGTTTGTCTCTTAAACAAGACAAACAAG
714 GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
63126 AATGGTCATG
Statistics
Matches: 1839, Mismatches: 304, Indels: 269
0.76 0.13 0.11
Matches are distributed among these distances:
724 6 0.00
725 15 0.01
726 49 0.03
727 169 0.09
728 16 0.01
729 5 0.00
730 3 0.00
731 4 0.00
733 3 0.00
735 9 0.00
736 1 0.00
739 2 0.00
741 3 0.00
742 1 0.00
743 1 0.00
744 1 0.00
748 2 0.00
749 5 0.00
753 8 0.00
755 2 0.00
756 6 0.00
757 4 0.00
758 1 0.00
759 9 0.00
760 875 0.48
761 317 0.17
762 3 0.00
763 4 0.00
764 6 0.00
765 2 0.00
767 9 0.00
771 5 0.00
772 2 0.00
776 1 0.00
777 1 0.00
778 2 0.00
779 3 0.00
781 2 0.00
784 1 0.00
785 10 0.01
787 3 0.00
789 4 0.00
790 3 0.00
791 5 0.00
792 18 0.01
793 163 0.09
794 51 0.03
795 18 0.01
796 6 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (761 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTGTTGCATGGAAATC
TTTTCTTTCACCTATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCTC
GTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
CCTATTAAATAAGACAAACAACAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACCAT
AAACTTTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
CTTCATTCTTTTTGCGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
ATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCCTTAATATCAAAATTCATCCCATAA
TTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACAT
TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACCGT
TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:61742 original size:476 final size:475
Alignment explanation
Indices: 60849--62081 Score: 1928
Period size: 476 Copynumber: 2.6 Consensus size: 475
60839 AAACAAGCAT
*
60849 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTG-ATGGAAATCT
* * * * *
60914 TTT-ATTTACGTTATTTTCCTTAATAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCTC
65 TTTCTTTTCCCTT-TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTC
* *
60978 GTAAGAGGCTGCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGA
129 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
*
61043 CATTAATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTGATAGAAGTAAAGTTTG
194 CATTAATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
* * *
61108 CCTATTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCAATCTTATCATGATTCGGCACCAT
259 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCAATCTTATCATGATTAGGCACCAT
* *
61173 AAGCTTTGTCTTCTCGTAAGAATACAAGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTG
324 AAACTTTGTCTTCTCATAAGAATACAAGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTG
*
61238 TCACCAATTTTTGTAAAGTCTCAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAC
389 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAC
61303 CTTCATTCTTTTTGTGATTAGG
454 CTTCATTCTTTTTGTGATTAGG
*
61325 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGGTGGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGAT-GGAAATCT
* * * *
61390 TTTCTTTTCCCTTTTTTCCTTAATATCGAAATTCATCCCATAATTATGGCAAGCATCAATTCTCG
65 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * *
61455 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGGTACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
*
61520 ATTAATGCTTTGGTGTCGCAAGAAAACGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
195 ATTAATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
* * *
61585 CTCTAAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
260 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCAATCTTATCATGATTAGGCACCATA
* * ** * *
61650 AACTTTGTCTTGTCATAAGGATACGCGATATTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGT
325 AACTTTGTCTTCTCATAAGAATACAAGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTGT
* *
61715 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGACC
61780 TTCATTCTTTTTGTGATTAGG
455 TTCATTCTTTTTGTGATTAGG
* ** *
61801 CACGGTAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCACGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTG-ATGGAAATCT
* * *** * *
61866 ATTCTTTGCCCCACTTTCCTTAATATCAAAATTCATCCCATAATTCTGACAAGCTTCGATTCACG
65 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * * *
61931 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTATGAGCACATTCCCTTTATAAGGATACACGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * * *
61996 ATTGATGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGTTTTTCATTGAAGTAAAGTTTGT
195 ATTAATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
*
62061 CTCTTAAATAAGAGAAACAAG
260 CTCTTAAATAAGACAAACAAG
62082 CGTGACTATA
Statistics
Matches: 689, Mismatches: 65, Indels: 6
0.91 0.09 0.01
Matches are distributed among these distances:
475 1 0.00
476 682 0.99
477 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (475 bp):
GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGATGGAAATCTT
TTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTAATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCAATCTTATCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAAGAATACAAGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGACCT
TCATTCTTTTTGTGATTAGG
Found at i:61829 original size:158 final size:156
Alignment explanation
Indices: 61189--61839 Score: 385
Period size: 159 Copynumber: 4.1 Consensus size: 156
61179 TGTCTTCTCG
* * * *
61189 TAAGAATACAAGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATTTTTGTAA
1 TAAGGATACATGATATTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGTCACC-ATTTTTGTAA
* * * * *
61254 AGTCTCAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGACCTTCATTCTTTTTGTG
65 AGTCTAAGTTCGT-CCTCAAATGAGACAAACAAGAATTCTAGTAATGATCTCCATTCTTTTCGTG
* *
61319 ATTAGGGACTATAAACACATTCTCCTCA
129 ATTAGGCACGATAAACACATTCTCCTCA
* * * ** ** * *
61347 TTAGGATAAATGATATTCACGATT-TTCT--TTTGGTGGGAAATCTTTTCTTTTC-CCTTTTTTC
1 TAAGGATACATGATATT---GATTCTT-TGGTTTCGTAAGAAAGGTTTTCTTGTCACCATTTTT-
* * * * * * * ** * *
61408 CTTAATA-TCGAAATTCATCC-CATAATTATGGCAAGCATCAATTCTCGTAA-GAGGCTCCATTC
61 -GTAA-AGTCTAAGTTCGTCCTCA-AATGA-GACAAACAAGAATTCTAGTAATGA-TCTCCATTC
* * * *
61470 TTTTCGAGATT-GGGA-GCTAAGAACACATTC-CATTCA
121 TTTTCGTGATTAGGCACGAT-A-AACACATTCTC-CTCA
* * * * * * * *
61506 TAAGGGTACATGACATTAATGCTTTGGTGTCGCAAGAAAACGTTTTCTT-TCCACCGTTTTTGAT
1 TAAGGATACATGATATTGATTCTTTGGTTTCGTAAG-AAAGGTTTTCTTGT-CACCATTTTTG-T
* * * * * ** * *
61570 AGAAGT-AAAGTTTGTCTCTAAAATAAGACAAACAAGAATTGTCA-TGCTAATCCCCATTCTTTT
63 A-AAGTCTAAGTTCGTC-CTCAAATGAGACAAACAAGAATTCT-AGTAATGATCTCCATTCTTTT
* * ** **
61633 CATGATTAGGCACCATAAAC-TTTGTCTTGTCA
125 CGTGATTAGGCACGATAAACACAT-TCTCCTCA
**
61665 TAAGGATACGCGATATTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAA
1 TAAGGATACATGATATTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGTCACC-ATTTTTGTAA
* * * *
61730 AGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTG
65 AGTCTAAGTTCGT-CCTCAAATGAGACAAACAAGAATTCTAGTAATGATCTCCATTCTTTTCGTG
*
61795 ATTAGGCACGGTAAACACATTCTCCTCA
129 ATTAGGCACGATAAACACATTCTCCTCA
* *
61823 TTAGGATAAATGATATT
1 TAAGGATACATGATATT
61840 CACGATTTTC
Statistics
Matches: 350, Mismatches: 107, Indels: 72
0.66 0.20 0.14
Matches are distributed among these distances:
156 3 0.01
157 15 0.04
158 128 0.37
159 175 0.50
160 22 0.06
161 7 0.02
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (156 bp):
TAAGGATACATGATATTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGTCACCATTTTTGTAAA
GTCTAAGTTCGTCCTCAAATGAGACAAACAAGAATTCTAGTAATGATCTCCATTCTTTTCGTGAT
TAGGCACGATAAACACATTCTCCTCA
Found at i:62316 original size:284 final size:284
Alignment explanation
Indices: 61806--62648 Score: 1346
Period size: 284 Copynumber: 3.0 Consensus size: 284
61796 TTAGGCACGG
* * * *
61806 TAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCACGGAAATCTATTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
*** * * * ** * * *
61871 TTGCCCCACTTTCCTTAATATCAAAATTCATCCCATAATTCTGACAAGCTTCGATTCACGTAAGA
66 TTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
** * * *
61936 GGCTCCATGCTTTTCGAGATTGGGAGCTATGAGCACATTCCCTTTATAAGGATACACGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
* * * *
62001 TGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGTTTTTCATTGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
* *
62066 AAATAAGAGAAACAAGCGTGACTA
261 AAATAAGACAAACAAGCATGACTA
* * *
62090 TAAACACATTCCCCTCATTATGATAAACGATATTCACGATGTTCTTTTGCATGGAAATCTTTTTT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
62155 TTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
62220 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
* *
62285 TGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAAGCAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
* *
62350 AAATAAGACAAATAAGCATGTCTA
261 AAATAAGACAAACAAGCATGACTA
62374 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
62439 TTATGCTATTTTCCTTAATA-CCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCTTAAG
66 TTATGCTATTTTCCTTAATATCC-AAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAG
*
62503 AGGCTCCATTCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTG
130 AGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTG
62568 ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCT
195 ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCT
62633 TAAATAAGACAAACAA
260 TAAATAAGACAAACAA
62649 CAATTGTCAT
Statistics
Matches: 516, Mismatches: 42, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
283 2 0.00
284 514 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
TTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:63405 original size:476 final size:475
Alignment explanation
Indices: 62371--64077 Score: 2740
Period size: 476 Copynumber: 3.6 Consensus size: 475
62361 ATAAGCATGT
*
62371 CTATAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* * * * *** * * *
62436 TCTTTATGCTATTTTCCTTAATACCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCTTA
66 TCTTTGTCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGTA
* *
62501 AGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
* *
62566 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTCT
* *
62631 CTTAAATAAGACAAACAACAATTGTCATGCTAATCCCCATTCTTTTCTTGATTAGGCACCATAAA
261 CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
* *
62696 CTTTGTCTTCTCATAAGGATACACGATATTGAGTCTTTGGTTTCGTAAGAAAGGCTTTCTTCTCA
326 CTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
*
62761 CAAATTTTTGT-AATGTCTAAGTTCGTGCCTTAAATGAGACAAACGAGGATTCTAGTCATGATCT
391 CAAATTTTTGTAAAT-TCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
**
62825 TCATTCTTTTTGCAATTAGGCA
455 TCATT-TTTTTGTGATTAGGCA
* * *
62847 CTATAAACACGTTCTCCTCGTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* * *
62912 CCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGATAAGCTTCGATTATCGTA
66 TCTTTGTCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGTA
62977 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
*
63042 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTTATAGAAGTAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTCT
* *
63107 CTTAAACAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
261 CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
* * *
63172 CTTTGTCTTCACAT-AGGAATACAAGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTTGTTGT
326 CTTTGTCTTCTCATAAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGC-TTTCTTGT
* *
63236 CACAAATTTTTGTAAATTCTAAATTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTCATGATC
389 CACAAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATC
*
63301 TTCATTTTTTTGGTGATTAGGGA
454 TTCATTTTTTT-GTGATTAGGCA
63324 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* * * *
63389 TCTTT-TCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCGTA
66 TCTTTGTCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGTA
* * * *
63453 GGAGGCACCATTCTTTCCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
63518 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTCT
63583 CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
261 CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
* *
63648 CTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGCTTTCGAAAGAAAGGCTTTCTTGTCA
326 CTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
* * * *
63713 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGTTCTT
391 CAAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTT
*
63778 CATCCTTTTTGTGATTAGGCA
456 CAT-TTTTTTGTGATTAGGCA
* *
63799 -TGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
1 CT-ATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
* * *
63863 TTCTTTGGCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCA-CG
65 TTCTTTGTCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATT-ATCG
* *
63927 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACACGAC
129 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
63992 ATTGATGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGT
194 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
*
64057 CTCTTAAATAAGAGAAACAAG
259 CTCTTAAATAAGACAAACAAG
64078 CATGACTATA
Statistics
Matches: 1138, Mismatches: 84, Indels: 18
0.92 0.07 0.01
Matches are distributed among these distances:
474 1 0.00
475 150 0.13
476 837 0.74
477 147 0.13
478 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
TCTTTGTCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGTA
AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTCT
CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
CTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
CAAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTT
CATTTTTTTGTGATTAGGCA
Found at i:64312 original size:284 final size:284
Alignment explanation
Indices: 63802--64643 Score: 1384
Period size: 284 Copynumber: 3.0 Consensus size: 284
63792 TTAGGCATGG
* *
63802 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * *** * *
63867 TT-GGCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACGTAAG
66 TTATG-CTATTTTCCTTAATATCAAAATTCATCCTGTAACTATTACAAGCTTCGATTCTCGTAAG
* * *
63931 AGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACACGACATTG
130 AGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTG
* * * * *
63996 ATGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGTCTCT
195 ATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCT
*
64061 TAAATAAGAGAAACAAGCATGACTA
260 TAAATAAGACAAACAAGCATGACTA
* *
64086 TAAACACATTCCCCTCATTATGATAAACGATATTCACGATTTTCATTTGCATGGAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
64151 TTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATTATAAGCTTCGATTCTCGTAAGA
66 TTATGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATTACAAGCTTCGATTCTCGTAAGA
64216 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
*
64281 TGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAAGCAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
64346 AAATAAGACAAACAAGCATGTCTA
261 AAATAAGACAAACAAGCATGACTA
*
64370 TAAACACATTCCCCTCGTTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
64435 TTATGCTATTTTCCTTAATATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCTTAAGA
66 TTATGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATTACAAGCTTCGATTCTCGTAAGA
*
64500 GGCTCCATTCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
*
64565 TGCTTTGGTGTCGCAAG-AAAA-TGTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
64628 AAATAAGACAAACAAG
261 AAATAAGACAAACAAG
64644 AATTGTCATG
Statistics
Matches: 522, Mismatches: 35, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
282 56 0.11
283 4 0.01
284 461 0.88
285 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (284 bp):
TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
TTATGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATTACAAGCTTCGATTCTCGTAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:65264 original size:476 final size:475
Alignment explanation
Indices: 64367--66071 Score: 2707
Period size: 476 Copynumber: 3.6 Consensus size: 475
64357 ACAAGCATGT
* *
64367 CTATAAACACATTCCCCTCGTTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
*** * * *** * *
64432 TCTTTATGCTATTTTCCTTAATATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCTTA
66 TCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTCGTA
* *
64497 AGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
*
64562 TGATGCTTTGGTGTCGCAAGAAAATG--TTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCT
64625 CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCT-TTCTTTTCATGATTAGGCACCATAA
261 CTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCTATTCTTTTCATGATTAGGCACCATAA
* *
64689 ACTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTC
325 ACTTTGTCTTCTCAT-AGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
64754 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
389 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
*
64819 TCATTCTTTTTGTAATTAGGCA
454 TCATTCTTTTTGTGATTAGGCA
* * *
64841 CTATAAACACATTCTACTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* * *
64906 TCTTTGCCCCATTTTCATTAATATCAAAATTAATCCCATAATTATGACAGGCTTCGATTATCGTA
66 TCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTCGTA
* * *
64971 GGAGGCTCCATGCTTTTCGAGATTGGGAGCTGAGAACACATTCCATTCATAAGGATACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
65036 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCT
* *
65101 CTTAAATAAGACAAACAAGAATGGTCATGCTAATCTCTATTCTTTTCATGATTAGGCACCATAAA
261 CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAA
* **
65166 CTTTGTCTTCTCCTAGGAATACACGGCATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
326 CTTTGTCTTCTCATAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
** *
65231 TAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTT
390 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTT
* *
65296 CATTTTTTTTGTGATTAGGGA
455 CATTCTTTTTGTGATTAGGCA
65317 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* ** * * * *
65382 TCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCTCGGA
66 TCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTCGTA
** *
65447 AGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
* * * * * *
65512 TGATGCTTTGGTGTCGCAAGAAAATTTTTTTTTTCCGCCGTTTTTTATAGAAGCAATGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCT
* * * *
65577 CTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCATAAA
261 CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAA
* * *
65642 CTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGATTCGTAAGAAAGGCTTTCTTGTC
326 CTTTGTCTTCTC-ATAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
* *
65707 ACCAATTTTTGTAAAGTCTAAGTTCGTG-CTCAAATGAGACAAACGAGCATTCTAGTAATGATCT
389 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
65771 TCATTCTTTTTGTGATTAGGCA
454 TCATTCTTTTTGTGATTAGGCA
** *
65793 CGGTAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* * * *
65858 TCTTTGCCCCATTTTCCTTAATATCAAAAGTCATCCCGTAATTATGACAAGCTTCGATTCTCGCA
66 TCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTCGTA
*
65923 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
65988 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCT
66053 CTTAAATAAGACAAACAAG
261 CTTAAATAAGACAAACAAG
66072 CATGACTATA
Statistics
Matches: 1120, Mismatches: 105, Indels: 10
0.91 0.09 0.01
Matches are distributed among these distances:
474 199 0.18
475 6 0.01
476 851 0.76
477 64 0.06
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
TCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAATTATGACAAGCTTCGATTCTCGTA
AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCT
CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAA
CTTTGTCTTCTCATAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCAC
CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTC
ATTCTTTTTGTGATTAGGCA
Found at i:66306 original size:284 final size:284
Alignment explanation
Indices: 65796--66355 Score: 967
Period size: 284 Copynumber: 2.0 Consensus size: 284
65786 TTAGGCACGG
*
65796 TAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
65861 TTGCCCCATTTTCCTTAATATCAAAAGTCATCCCGTAATTATGACAAGCTTCGATTCTCGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
65926 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
*
65991 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
66056 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
*
66080 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * *
66145 TTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
* * * *
66210 GGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
* *
66275 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTCTCAT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
*
66340 AAATATGACAAACAAG
261 AAATAAGACAAACAAG
66356 AATTGTCATG
Statistics
Matches: 259, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
284 259 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAAGACAAACAAGCATGACTA
Found at i:66774 original size:760 final size:760
Alignment explanation
Indices: 65315--68347 Score: 5240
Period size: 760 Copynumber: 4.0 Consensus size: 760
65305 TGTGATTAGG
*
65315 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * * * * * * * *
65380 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* * * *
65445 GAAGAGGCTCCAT-TTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA
131 TAAGAGGCTCCATGCTTTTT-GAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGA
* * * * * *
65509 CATTGATGCTTTGGTGTCGCAAGAAAATTTTTTTTTTCCGCCGTTTTTTATAGAAGCAATGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
* * *
65574 TCTCTTAAATAAT-ACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCA
260 TCTCATAAAT-ATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCA
* *
65638 TAAACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGATTCGTAAGAAAGGCTTTCT
324 TAAACTTTGTCTTCTCAAAAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCT
*
65703 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTG-CTCAAATGAGACAAACGAGCATTCTAGTAATG
388 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATG
* *
65767 ATCTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAATGATATTCA
453 ATCTTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCA
* * *
65832 CGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAAGTCATCCCGT
518 CAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCAT
* *
65897 AATTATGACAAGCTTCGATTCTCGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCAC
583 AATTATGACAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACAC
65962 ATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC
648 ATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC
66027 GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
713 GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
66075 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
66140 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* *
66205 TAAGAGGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
66270 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
66335 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
66400 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCAAAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
66465 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* *
66530 TACATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
66595 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
* * *
66660 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCATTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGACAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATT
66725 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
*
66790 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCTT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
66835 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
*
66900 TTTCTTTACGCTATTTTCCTTGTTATCAAAATTCAT-CCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* *
66964 TAAGAGGCTCCATGCTTTTGGAGATTGGGAGCTAAGAACACGTTCCATTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* *
67029 ATTTATGCTTTTGG-GTCGCAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTG
196 ATTGATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
*
67093 TCTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
67158 AAACTTTGTCTTCTCAAAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
325 AAACTTTGTCTTCTCAAAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
**
67223 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
67288 C-T--TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
455 CTTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
*
67350 ATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
520 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* *
67415 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACAT
585 TTATGACAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACAT
*
67480 TCCCTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
650 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
67545 TTCTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
715 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
67591 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
**
67656 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
*
67721 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* *
67786 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
67851 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
67916 AACTTTGTCTCCTCATAAGGATACACGATATTGATTCATTT-GTTTCGTAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGGATACACGATATTGATTC-TTTGGTTTCGTAAGAAAGGCTTTCTTG
* *
67980 TCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
* * * **
68045 CTTCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATG
455 CTTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
* *
68110 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAA
520 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* * * *
68175 TTATGACAGGCTTCGATT-ATCGTAGGAGGCTCCATGCTTTTCGAGATTGGGAGGTAAGAACACA
585 TTATGACAAGCTTCGATTCA-CGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
* *
68239 TTCCATTCATAAGGATACATGACATTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCG
649 TTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
68304 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
714 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
68348 AATGGTCATG
Statistics
Matches: 2170, Mismatches: 92, Indels: 22
0.95 0.04 0.01
Matches are distributed among these distances:
756 397 0.18
757 328 0.15
758 4 0.00
759 404 0.19
760 1032 0.48
761 5 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (760 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
TATGACAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATT
CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:67819 original size:284 final size:284
Alignment explanation
Indices: 67308--67871 Score: 921
Period size: 284 Copynumber: 2.0 Consensus size: 284
67298 GTGATTAGGC
67308 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * *
67373 TTCTTTTCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
67438 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACA
* *
67503 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
67568 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
**
67592 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * *** * *
67657 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
* *
67722 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACA
* * * *
67787 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
67852 TCATAAATATGACAAACAAG
261 TCATAAATAAGACAAACAAG
67872 AATTGTCATG
Statistics
Matches: 257, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 257 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:68489 original size:476 final size:475
Alignment explanation
Indices: 67592--69299 Score: 2781
Period size: 476 Copynumber: 3.6 Consensus size: 475
67582 AACAAGCATG
*
67592 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
* * * *** * *
67657 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
*
67722 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* ** *
67787 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
* *
67852 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
*
67917 ACTTTGTCTCCTCATAAGGATACACGATATTGATTCATTT-GTTTCGTAAGAAAGGCTTTCTTGT
326 ACTTTGTCTTCTCAT-AGGATACACGATATTGATTC-TTTGGTTTCGTAAGAAAGGCTTTCTTGT
* *
67981 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATC
389 CACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATC
*
68046 TTCATTCTTTTTGTAATTAGGC
454 TTCATTCTTTTTGTGATTAGGC
* * *
68068 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGAAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
*
68133 TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAGGCTTCGATTATCGT
66 TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
* * *
68198 AGGAGGCTCCATGCTTTTCGAGATTGGGAGGTAAGAACACATTCCATTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
*
68263 TTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
* *
68328 TCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
68393 ACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
* * *
68458 ATAAATTTTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCT
390 ACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
* *
68523 TCATTTTTTTTGTGATTAGGG
455 TCATTCTTTTTGTGATTAGGC
*
68544 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCGT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
* *** * * * * *
68609 TTCTTTTCCTTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
* * * * *
68674 AGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
68739 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGAC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
*
68804 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
68869 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCAT-AGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
* *
68934 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
390 ACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
*
68999 ACATTCTTTTTGTGATTAGGC
455 TCATTCTTTTTGTGATTAGGC
** *
69020 ACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
* *
69085 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCA-CG
66 TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAAGCTTCGATT-ATCG
* * *
69149 CAAGAGGCTCCATGCATTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
69214 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
69279 CTCTTAAATAAGACAAACAAG
260 CTCTTAAATAAGACAAACAAG
69300 CTTGACTATA
Statistics
Matches: 1141, Mismatches: 87, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
475 6 0.01
476 1132 0.99
477 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
CAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTT
CATTCTTTTTGTGATTAGGC
Found at i:69532 original size:283 final size:284
Alignment explanation
Indices: 69024--69582 Score: 906
Period size: 283 Copynumber: 2.0 Consensus size: 284
69014 TTAGGCACGG
69024 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
69089 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
*
69154 GGCTCCATGCATTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCATTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
*
69219 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
69284 AAATAAGACAAACAAGCTTGACTA
261 AAATAAGACAAACAAGCTTGACTA
**
69308 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * *
69373 TTACGCTATTTTCCTTATTATCAAAATTCAT-CCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
* * * *
69437 GGCTCCATGCTTTTGGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACATTTA
131 GGCTCCATGCATTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * *
69502 TGCTTTTGG-GTCGCAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGTCTCA
196 TGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCA
*
69566 TAAATACGACAAACAAG
260 TAAATAAGACAAACAAG
69583 AATTGTCATG
Statistics
Matches: 253, Mismatches: 21, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
283 158 0.62
284 95 0.38
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCATTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAAGACAAACAAGCTTGACTA
Found at i:70117 original size:756 final size:757
Alignment explanation
Indices: 68543--70815 Score: 3933
Period size: 756 Copynumber: 3.0 Consensus size: 757
68533 TGTGATTAGG
* *
68543 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * * * * * * *
68608 TTTCTTTTC-CTTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTC
66 TTTCTTTACGC-TATTTTCCTTATTATCAAAATTCAT-CCGTAACTATGACAAGCTTCGATTCTC
* * * * * *
68672 GTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGA
129 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGA
*
68737 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
* * *
68802 ACTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCAT
259 TCTCATAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
68867 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
324 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
68932 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
389 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
**
68997 CTACATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACA
454 CT--ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
69062 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
517 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* *
69127 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCATTTCGAGATTGGGAGCTAAGAGCACAT
582 TTATGTCAAGCTTCGATTCATGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
69192 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
647 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
69257 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCTT
712 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
69303 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
69368 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCGTAACTATGACAAGCTTCGATTCTCGT
*
69433 AAGAGGCTCCATGCTTTTGGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
* *
69498 TTTATGCTTTTGG-GTCGCAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGT
196 TTGATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
*
69562 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
260 CTCATAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
69627 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
325 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
**
69692 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
69757 T-TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATT
455 TATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATT
69821 TTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
520 TTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
69886 TGTCAAGCTTCGATTCATGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
585 TGTCAAGCTTCGATTCATGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
* *
69951 CTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTC
650 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
70016 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
715 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
70059 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
*
70124 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATC-CGTAACTATGACAAGCTTCGATTCTCG
70189 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* *
70254 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
*
70319 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
260 CTCATAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
70384 AACTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGT
325 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
* *
70449 CACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* * * **
70514 TTCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAACGATATTAATGA
455 -T-ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
* *
70579 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAAT
518 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
* * * * *
70644 TATGACAGGCTTCGATT-ATCGTAGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACAT
583 TATGTCAAGCTTCGATTCAT-GCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
* * *
70708 TCCATTCATAAGGATACATGACATTGATGCTTTGGCGTCGCAAGAAAATGTTTTTTTTCCACCGT
647 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
70773 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
712 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
70816 AATGGTCATG
Statistics
Matches: 1442, Mismatches: 63, Indels: 16
0.95 0.04 0.01
Matches are distributed among these distances:
756 401 0.28
757 333 0.23
758 1 0.00
759 330 0.23
760 376 0.26
761 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (757 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCGTAACTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTT
TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
GTCAAGCTTCGATTCATGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCC
TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:70287 original size:284 final size:284
Alignment explanation
Indices: 69776--70339 Score: 914
Period size: 284 Copynumber: 2.0 Consensus size: 284
69766 GTGATTAGGC
69776 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * *
69841 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCATGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCATGC
*
69906 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
69971 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
70036 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
**
70060 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * ***
70125 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTC-TCG
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCAT-G
* *
70189 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
130 CAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * * *
70254 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGT
195 ATTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGT
*
70319 CTCATAAATATGACAAACAAG
260 CTCATAAATAAGACAAACAAG
70340 AATTGTCATG
Statistics
Matches: 257, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
283 1 0.00
284 256 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCATGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:70959 original size:476 final size:475
Alignment explanation
Indices: 70060--71767 Score: 2722
Period size: 476 Copynumber: 3.6 Consensus size: 475
70050 AACAAGCATG
* *
70060 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* * * * *** * *
70125 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
*
70190 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* * **
70255 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
* *
70320 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* *
70385 ACTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCAT-AGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
*
70450 ACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
390 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
*
70515 TCATTCTTTTTGTAATTAGGC
455 TCATTCTTTTTGTGATTAGGC
* * *
70536 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTAATGATTTTCTTTTGCATGAAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* *
70601 TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAGGCTTCGATTATCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
* *
70666 AGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
70731 TTGATGCTTTGGCGTCGCAAGAAAATGTTTTTTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
* *
70796 TCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
70861 ACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
** * *
70926 ATAAATTTTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCT
390 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
* *
70991 TCATTTTTTTTGTGATTAGGG
455 TCATTCTTTTTGTGATTAGGC
*
71012 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* ** * * * *
71077 TTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCTATAATTATGGCAAGCATCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
* * *
71142 AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACAAGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
71207 TTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG-C
196 TTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
*
71271 TCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* * * *
71336 ACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATGT
326 ACTTTGTCTTCTC-ATAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
* *
71401 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGTATTCTAGTAATGATC
389 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATC
71466 TTCATTCTTTTTGTGATTAGGC
454 TTCATTCTTTTTGTGATTAGGC
* *
71488 A-TGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCA-CAGAAATC
1 ACT-ATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGA-AAATC
*
71551 TTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTCTGACAAGCTTCGATTCA-
64 TTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATT-AT
* *
71615 CGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAGACATTCCCTTCATAAGGATACACG
128 CGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATG
* * * * *
71680 ACATTGATGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTT
193 ACATTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTT
71745 GTCTCTTAAATAAGACAAACAAG
258 GTCTCTTAAATAAGACAAACAAG
71768 CATGACTATA
Statistics
Matches: 1134, Mismatches: 91, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
475 88 0.08
476 1026 0.90
477 20 0.02
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTT
CATTCTTTTTGTGATTAGGC
Found at i:72002 original size:284 final size:284
Alignment explanation
Indices: 71492--72051 Score: 904
Period size: 284 Copynumber: 2.0 Consensus size: 284
71482 TTAGGCATGG
*
71492 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
1 TAAACACATTCTCCCCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
* * ***
71557 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTCTGACAAGCTTCGATTCACGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCAACCCATAACAATGACAAGCTTCGATTCACGTAAGA
* * *
71622 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAGACATTCCCTTCATAAGGATACACGACATTGA
131 GGCCCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTAATAAGGATACACGACATTGA
*
71687 TGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
71752 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
* * **
71776 TAAACACATTCTCCCCGTTAGGATAAACGATATTCAGGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCCCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
* * * *
71841 TTACGCTATTTTCCTTAATATCAAAATTCAACCCGTAACAATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCAACCCATAACAATGACAAGCTTCGATTCACGTAAGA
* * *
71906 GGCCCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTAATGAGGATACATGACATTGA
131 GGCCCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTAATAAGGATACACGACATTGA
* * *
71971 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGGTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
72036 AAATAAGACAAACAAG
261 AAATAAGACAAACAAG
72052 AATTGTCATG
Statistics
Matches: 252, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
284 252 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (284 bp):
TAAACACATTCTCCCCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCAACCCATAACAATGACAAGCTTCGATTCACGTAAGA
GGCCCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTAATAAGGATACACGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:72663 original size:475 final size:475
Alignment explanation
Indices: 71771--77471 Score: 3679
Period size: 476 Copynumber: 11.6 Consensus size: 475
71761 AAACAAGCAT
* * *
71771 GACTATAAACACATTCTCCCCGTTAGGATAAACGATATTCAGGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * **
71836 TTTCTTTACGCTATTTTCCTTAATATCAAAATTCAACCCGTAACAATGACAAGCTTCGATTCTCG
66 TTTCTTTCCCCT-TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * * *
71901 TAAGAGGCCCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTAATGAGGATACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
71966 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGGTTTTGATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
72031 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
260 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
72096 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
325 AACTTTGTCTTCTCATAAGGATACACGATATTGAATCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
* *
72161 CACCAATTTTTGTAAAGTCTTAGTTCGTGCCTCAAAAGAGACAAACGAGGATTCTAGTAATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
72226 TTCATTCTTTTTGTGATTAGG
455 TTCATTCTTTTTGTGATTAGG
*
72247 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * *
72312 TTTCTTTTCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCGT
66 TTTCTTTCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * * * * *
72377 AGGAGGCACCATTCTTTCCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGGTACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
72442 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
72507 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* *
72572 ACTTTGTCTTCTCATAAGGATACACGATATTGAATCTTTGCTTTCGAAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAAGGATACACGATATTGAATCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
*
72637 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGTTCT
391 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
72702 TCATTCTTTTTGTGATTAGG
456 TCATTCTTTTTGTGATTAGG
* ** *
72722 CACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * *
72787 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACG
66 TTTCTTT-CCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * *
72852 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTTAGAGCACATTCCCTTCATAAGGATACACGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * * * *
72917 ATTGATGCTTTGGTGTCGCAATAAATTGTTTTATTTCCACCGGTTTTCATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
* * * * * * *** * * *** *
72982 CTCTTAAATAAGAGAAACAAGCA-TGAC-T-ATAA-ACACATTCCCCTCATTATGATAAACGATA
260 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * * * ** * * *
73043 TTCACGATTT-TCTTTTGCAT--GGA-A-ATC-TTTTCTTTATGCTATT--TTCCTTAATATCCA
325 --AAC--TTTGTCTTCT-CATAAGGATACA-CGATAT-TGAAT-CT-TTGGTTTCGT-A-A--GA
** * * * * * * * ** *
73100 AATTCATCCTGTAACTATGACAAGCTTCTATTCTCGTAAGAGGCTCCA-TGC-T-TTTCGAGATT
377 AAGGC-T--T-T--CT-TGTC-A-C--CAATTTTTGTAA-AGTCT-AAGTTCGTGCCTC-A-AAT
* * * * * * *
73162 GGGAGCTAAAAAC-A-CATTCCCTTCA-TAAGGATACATGACATTGATGCTTTG-G--T-GTC
427 --GAG--ACAAACGAGGATT--C-T-AGTAATGAT-C-T-TCATT-CT-TTTTGTGATTAG-G
* * * ** * ** * **
73218 G-CAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAA-GCA-A---A-G-TTTGTCTCTTAAAT
1 GACTATAAACA-CATTC--TCC-TC-ATTAGGATA-AACG-ATATTCACGATTT-TCTTTTGCAT
* * * * * * * ** * * * * * *
73275 AAGACAAACAAGCATGTCTATAAACACATTCCCCTCATTAGGATAAACGATATTCA--CGATTTT
58 --G---GA-AATCTTTTCT-T--TCCCCTT--TTTCCTTA--AT-ATCAAAATTCATCCCA--TA
* * * ** ** * * *** ** * * * * * *
73338 CTTTTG-CATGGAAATCTTTTCT-TTACGCTATTTTCC-TTATTATCAAAATTCATCTTGTAACT
107 ATTATGACA-AG-CTTCGATTCTCGTAAG--AGGCTCCATGCTTTTC--GA--GAT-TGGGAGCT
* ** * * * * * *
73400 ATG-ACA-AGCTTCGATTCTCGTAAGAGGCTCCATG-CTTTTCGA-G-ATTGG-G-AGCTAAGAA
163 AAGAACACA--TTC-CCT-TCAT-A-AGGATACATGAC-ATT-GATGCTTTGGTGTCGC-AAGAA
* * * ** * * * * *
73458 CACGTTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC
219 AATGTT---TTC-T-----T---T-CCACCG-T--TTT-TTATAG-AAGTAAA-G--TT-TGT-C
* * **** *
73523 ATCGTTTTTGATAGAAGTA-AAGTTTGTCTCTTACATAAGACAAACAAGAATTGTCATGCTAATC
261 -TC----TT-AAATAAG-ACAAACAAG-A---------------------ATTGTCATGCTAATC
* * *
73587 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTCCTCATAAGGATACACGATATTTATTC
297 CCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATATTGAATC
*
73652 TTTTGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
362 TTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
73717 GAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTAATTAGG
427 GAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGG
* * *
73766 CACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * *
73831 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTATCG
66 TTTCTTT-CCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* *
73896 TAGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
*
73961 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
* *
74026 CTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATA
260 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
74091 AACTTTGTCTTCTCAT-AGGAATACACGGTATTGATTCTTTGGTTTCGTAAGAAAAGCTTTCTTG
325 AACTTTGTCTTCTCATAAGG-ATACACGATATTGAATCTTTGGTTTCGTAAGAAAGGCTTTCTTG
** * *
74155 TCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGAT
389 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
74220 CTTCATT-TTTTTGTGATTAGG
454 CTTCATTCTTTTTGTGATTAGG
74241 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * *
74306 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCTCA
66 TTTC-TTTCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTC-
** *
74371 G-AAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA
129 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* * *
74435 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* *
74500 TCTCTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
259 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
* * *
74565 AAACTTTGTCTTCTCAAAAGGATACACGATTATTG-ATGCTTTGGTTTCGTAAGAAAGGTTTTCA
324 AAACTTTGTCTTCTCATAAGGATACACGA-TATTGAAT-CTTTGGTTTCGTAAGAAAGGCTTTCT
*
74629 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGTATTCTAGTAATG
387 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATG
74694 ATCTTCATTCTTTTTGTGATTAGG
452 ATCTTCATTCTTTTTGTGATTAGG
* * **
74718 CA-TGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATC
1 GACT-ATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATC
* * *
74782 TTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTCTGACAAGCTTCGATTCAC
65 TTTTCTTT-CCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTC
* *
74847 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAGACATTCCCTTCATAAGGATACACGA
129 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* * * *
74912 CATTGATGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* * * * * ** * ** *** *
74977 TCTCTTAAATAAGACAAACAAGCA-TGAC-T-ATAA-ACACATTCTCCTCATTAGGATAAACGAT
259 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
* * ** * **** * *
75038 ATTCACGATTT-TCTTTTGCAT--GGA-A-ATCTTTTCTTTTCCCTTT--TTTCCTTAATATCAA
324 A--AAC--TTTGTCTTCT-CATAAGGATACA-C-GATATTGAATCTTTGGTTT-CGTAAGA--AA
** * * * * * * * *** *
75096 -AATTAATCCCATAAATATGGCAAGCATCGATTCTCGGAAGAGGCTCCA-TT--TTTTTCGAGAT
379 GGCTT--T--C-----T-TGTC-A-C--CAATTTTTGTAA-AGTCT-AAGTTCGTGCCTC-A-AA
* * *** * * * *
75157 TGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA-CATTGATGC-TTTGGTG--T-CG
426 TGAGA-C--A-AAC-GA--GGATTC-T-A--GTA-ATGATC-TTCATTCTTTTTGTGATTAGG
* ** **** * * *** * * ** ** *** ** * **
75215 CAAGA-AAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGTCTCTTAAATAATACAAA
1 GACTATAAACACATTC--TCC-TC-ATTAGGATA-AA-CGAT-ATTCACGATTTTCTTTTGCATG
* ** * * * *
75279 CAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCATAAACTTTGTCTTATCAAA
59 GAAATCTT-T--T-CT-TTCCCC--T-TTTTCCT--TAA--TATCA-AAA---T-TC--ATC---
** * * * * * *
75344 AGGATACACGATTATTG--ATGCTTTGGTT-TCGTAAGAAAGGCT---TTCTTGTC-ACCAATT-
102 -CCAT--A--ATTA-TGACAAGCTTCGATTCTCGTAAG--AGGCTCCATGCTTTTCGA--GATTG
*** * * * * * *
75401 TTTG-TAA-AGTCTA-AGTTCGTCC-TCA-AATGAGACA--A-A-CGA-GC----AT-T--CTAG
157 GGAGCTAAGA-AC-ACA-TTC--CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * ** * *
75449 -TAATG--ATC-TT-CATTC-TTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATA
217 AAAATGTTTTCTTTCCA-CCGTTTTT-T-A-TA-G-A-AGT-AA-AGTTTGT-CTC-TTA-AAT-
* ** * * * *** * *
75508 AATGATATTCACG-ATTTTCTTTTGC--A-CGAAAATCTTTTC-T--TT--GCCCCAT----TTT
269 AA-GACAAACAAGAATTGTC--ATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTT
* * * * * * * * * *
75560 -CCTTAAT-ATCAA-AATTCATCCCATAATTATGACAAGCTTCGATTCACGTAAG--AGGCCCCA
331 GTCTT-CTCAT-AAGGATACA--CGAT-A-T-TG--AATCTTTGGTT-TCGTAAGAAAGG---CT
* * * *** * * *
75620 TGCTTTTCGA--GATTGGGAGCTAAGAG-C-ACA-TTC---CCTTCAAAAGGATACATGACATTG
383 TTCTTGTC-ACCAATT-TTTG-TAA-AGTCTA-AGTTCGTGCC-TC-AAATGAGACA--A-A-CG
* * * *
75677 ATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTT-TTTGGTAGAAGTAAAGTTTGTCTC
437 A-G----GAT-T--CTAG-TAATG--ATCT-T-CA---TTCTTT--T-----T---G--TG----
*
75741 TTAAATAAGACAAACAAG
470 ----ATTAG--------G
75759 CATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAT-GAAA
1 ---GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAA
* * * * * * * *
75823 CTCTTTTCTTTACGCTATTTTCCATAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATT
63 -TCTTTTCTTTCCCCT-TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATT
* * * * *
75888 CTCGTAAGAGGCTCCACGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGA
126 CTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACA
* *
75953 TGACATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGT
191 TGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGT
* *
76018 TTGTCTCCTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCAC
256 TTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCAC
* * *
76083 CATAAACTTTGTCTTCTCAAAAGGATACATGATTATTG-ATGCTTTGGTTTCATAAGAAAGGCTT
321 CATAAACTTTGTCTTCTCATAAGGATACACGA-TATTGAAT-CTTTGGTTTCGTAAGAAAGGCTT
* *
76147 TCTTGTCACCAATTTTTGTAAAGTCTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTA
384 TCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTA
* *
76212 ATGATTTTCATTCTTTTTGAGATTAGG
449 ATGATCTTCATTCTTTTTGTGATTAGG
* *
76239 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * *
76304 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTC-TTTCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * * * *
76369 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
76434 ATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
*
76499 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATA
260 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
76564 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
325 AACTTTGTCTTCTCATAAGGATACACGATATTGAATCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
* *
76629 CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
76694 TTCATTCTTTTTGAGATTAGG
455 TTCATTCTTTTTGTGATTAGG
* *
76715 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * *
76780 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTC-TTTCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * * * * *
76845 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATGCAAAAGGGTACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
76910 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTTTAGAAGTAAAGTTTGA
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
*
76975 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
260 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
77040 AACTTTGTCTTCTCAT-AGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
325 AACTTTGTCTTCTCATAAGG-ATACACGATATTGAATCTTTGGTTTCGTAAGAAAGGCTTTCTTG
* * * *
77104 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGAT
389 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
77169 CTTCATTTTTTTTGTGATTAGG
454 CTTCATTCTTTTTGTGATTAGG
* * *
77191 GACTATAAACACATTCTCCTCCTTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * *
77256 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTC-TTTCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
*
77321 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
77386 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
77451 CTCTTAAATAAGACAAACAAG
260 CTCTTAAATAAGACAAACAAG
77472 CATGACTATA
Statistics
Matches: 4051, Mismatches: 733, Indels: 882
0.71 0.13 0.16
Matches are distributed among these distances:
472 24 0.01
473 35 0.01
474 23 0.01
475 796 0.20
476 1382 0.34
477 585 0.14
478 11 0.00
480 2 0.00
481 1 0.00
483 2 0.00
484 6 0.00
485 2 0.00
486 2 0.00
487 5 0.00
488 24 0.01
489 19 0.00
490 3 0.00
491 6 0.00
492 2 0.00
493 9 0.00
494 7 0.00
495 11 0.00
496 23 0.01
497 10 0.00
498 20 0.00
499 9 0.00
500 23 0.01
501 17 0.00
502 11 0.00
503 21 0.01
504 8 0.00
505 5 0.00
506 23 0.01
507 14 0.00
508 17 0.00
509 29 0.01
510 27 0.01
511 20 0.00
512 11 0.00
513 10 0.00
514 21 0.01
515 27 0.01
516 17 0.00
517 33 0.01
518 29 0.01
519 27 0.01
520 8 0.00
521 20 0.00
522 18 0.00
523 19 0.00
524 29 0.01
525 33 0.01
526 40 0.01
527 50 0.01
528 24 0.01
529 35 0.01
530 19 0.00
531 7 0.00
532 7 0.00
533 17 0.00
534 30 0.01
535 31 0.01
536 8 0.00
537 4 0.00
538 9 0.00
539 2 0.00
540 8 0.00
541 14 0.00
542 10 0.00
543 6 0.00
544 15 0.00
545 9 0.00
546 16 0.00
547 9 0.00
548 19 0.00
549 12 0.00
550 6 0.00
551 6 0.00
552 1 0.00
553 6 0.00
554 1 0.00
555 8 0.00
556 11 0.00
557 2 0.00
558 1 0.00
559 1 0.00
560 3 0.00
561 2 0.00
563 1 0.00
564 1 0.00
566 1 0.00
567 4 0.00
568 7 0.00
569 10 0.00
570 9 0.00
571 12 0.00
572 21 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTCCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAAGGATACACGATATTGAATCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
TCATTCTTTTTGTGATTAGG
Found at i:72718 original size:158 final size:155
Alignment explanation
Indices: 72069--72760 Score: 347
Period size: 158 Copynumber: 4.4 Consensus size: 155
72059 ATGCTAATCC
* * *
72069 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGAATACACGATATTGATTCT
1 CCATTCTTTTCGTGATTAGGCACCATAAACTTT-TCTTCTCATAAGGATACACGATATTGAATCT
* * ** *
72134 TTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTTAGTTCGTGCCTCAAAAG
65 TTGCTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATG
*
72199 AGACAAACGAGGATTCTAGTAATGATCT
129 AGACAAAC-AGGATTCTAGTAATGTTCT
* * * * ** * * * *
72227 TCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTCGTGATTAGGCACCATAAAC-TTTTCTTCTCATAAGGATACACGATATTGA--AT
* ** * * * * *
72292 -TTT-CTTTTGCAGGGAAA-TCTTTTCTTTTC-CC--TTTTTCCTTAATA-TCAAAATTCATCC-
63 CTTTGCTTTCG-AAAGAAAGGC-TTTCTTGTCACCAATTTTT--GTAA-AGTCAAAGTTCGTCCT
* * * * * * *
72349 CATAATTATGGCAAGCATCGATTCTCGTAGGA-G-GCA
123 CA-AATGA-GACAAACA-GGATTCTAGTA--ATGTTCT
* * * * * * * * * * *
72385 CCATTCTTTCCGAGATT-GGGAGCTAAGAACACATTCCAT-TCATAAGGGTACATGACATTG-AT
1 CCATTCTTTTCGTGATTAGGCA-C-CATAA-ACTTTTCTTCTCATAAGGATACACGATATTGAAT
* * * * * ** * *
72447 GCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTTTTTATAGAAGT-AAAGTTTGTCTCT
63 -CTTTGCTTTCGAAAG-AAAGGCTTTCTTGT-CACCAATTTTTGTA-AAGTCAAAGTTCGTC-CT
* * * * * *
72510 TAAATAAGACAAACAAGAAT-T-GTCATGCTAATCC
123 CAAATGAGACAAACAGGATTCTAGTAATG-T--TCT
*
72544 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATATTGAATCT
1 CCATTCTTTTCGTGATTAGGCACCATAAACTTT-TCTTCTCATAAGGATACACGATATTGAATCT
*
72609 TTGCTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
65 TTGCTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATG
72674 AGACAAACGAGGATTCTAGTAATGTTCT
129 AGACAAAC-AGGATTCTAGTAATGTTCT
* * ** ** * * *
72702 TCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATT
1 CCATTCTTTTCGTGATTAGGCACCATAAAC-TTTTCTTCTCATAAGGATACACGATATT
72761 CACGATTTTC
Statistics
Matches: 380, Mismatches: 109, Indels: 90
0.66 0.19 0.16
Matches are distributed among these distances:
154 1 0.00
155 3 0.01
156 9 0.02
157 24 0.06
158 220 0.58
159 94 0.25
160 18 0.05
161 11 0.03
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (155 bp):
CCATTCTTTTCGTGATTAGGCACCATAAACTTTTCTTCTCATAAGGATACACGATATTGAATCTT
TGCTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCAAAGTTCGTCCTCAAATGAG
ACAAACAGGATTCTAGTAATGTTCT
Found at i:73255 original size:284 final size:284
Alignment explanation
Indices: 72727--73570 Score: 1391
Period size: 284 Copynumber: 3.0 Consensus size: 284
72717 TTAGGCACGG
* *
72727 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * * *** * * *
72792 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACGTAAGA
66 TTACGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
* * *
72857 GGCTCCATGCTTTTCGAGATTGGGAGCTTAGAGCACATTCCCTTCATAAGGATACACGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * * * * *
72922 TGCTTTGGTGTCGCAATAAATTGTTTTATTTCCACCGGTTTTCATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
72987 AAATAAGAGAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
*
73011 TAAACACATTCCCCTCATTATGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
73076 TTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATGACAAGCTTCTATTCTCGTAAGA
66 TTACGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
*
73141 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
73206 TGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAAGCAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
73271 AAATAAGACAAACAAGCATGTCTA
261 AAATAAGACAAACAAGCATGACTA
73295 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
73360 TTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
*
73425 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
73490 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
73555 ACATAAGACAAACAAG
261 AAATAAGACAAACAAG
73571 AATTGTCATG
Statistics
Matches: 520, Mismatches: 40, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
284 520 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
TTACGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:73784 original size:158 final size:156
Alignment explanation
Indices: 73468--74756 Score: 445
Period size: 159 Copynumber: 8.1 Consensus size: 156
73458 CACGTTCCCT
* * * * * *
73468 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATC-GTTTTT
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAA-GCTTTCTTTCCACCAATTTTT
* * * * * *
73532 GATAGAAGT-AAAGTTTGTCTCTTACATAAGACAAACAA-GAAT-T-GTCATGCTAATCCCCATT
64 G-TA-AAGTCAAAGTTCGTC-CTCAAATGAGACAAACAAGGATTCTAGTCATG---ATCTCCATT
* * * **
73593 CTTTTCATGATTAGGCACCATAAAC-TTTGTCTCC
123 CTTTTCGTAATTAGGCACTATAAACACAT-TCTCC
* * * *
73627 TCATAAGGATACACGATATTTATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGT-CACCAATTTTT
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAA-GCTTTCTT-TCCACCAATTTTT
* * *
73691 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTT
64 GTAAAGTCAAAGTTCGT-CCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTCCATTCTTTT
*
73756 TGTAATTAGGCACTATAAACACATTCTCC
128 CGTAATTAGGCACTATAAACACATTCTCC
* * * * * ** * * *
73785 TCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CC-ATTTT
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCA-AGAAAGC-TTTCTTT-CCACCAATTTT
* * * ** *** * * * *
73848 CAT-TAATA-TCAAAATTCATCC-CATAATTATGACAGGCTTCGATTATCGT-AGGAGGCTCCAT
63 --TGTAA-AGTCAAAGTTCGTCCTCA-AATGA-GACAAACAAGGATTCTAGTCATGA-TCTCCAT
* * *
73909 GCTTTTCG-AGATT-GGGAGCTA-AGAACACATTC-CAT
122 TCTTTTCGTA-ATTAGGCA-CTATA-AACACATTCTC-C
* * * * *
73944 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTT
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAA-GCTTTCTTTCCACCAATTTTT
* * * * *
74008 GATAGAAGT-AAAGTTTGTCTCTTAAATAAGACAAACAAGAATGGTC-A-TGC-TAATC-CCTAT
64 G-TA-AAGTCAAAGTTCGTC-CTCAAATGAGACAAACAAGGAT--TCTAGT-CATGATCTCC-AT
* * * ** *
74068 TCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTC
122 TCTTTTCGTAATTAGGCACTATAAACACAT-TCTCC
* * * **
74103 TCAT-AGGAATACACGGTATTGATTCTTTGGTTTCGTAAGAAAAGCTTTCTTGT-CATAAATTTT
1 TCATAAGG-ATACACGATATTGATGCTTTGGTTTCGCAAG-AAAGCTTTCTT-TCCACCAATTTT
* *
74166 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTTCATT-TTT
63 TGTAAAGTCAAAGTTCGT-CCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTCCATTCTTT
* * *
74230 TTGTGATTAGGGACTATAAACACATTCTCC
127 TCGTAATTAGGCACTATAAACACATTCTCC
* * * * * ** * * * * *
74260 TCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTTC-CC-TTTTTT
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCA-AGAAAGC-TTTCTTTCCACCAATTTTT
* * ** * ** * *
74323 CCTTAATA-TCAAAATTAATCC-CATAAAT-ATGACAAGCATCGATTCTCAG--AAGAGGCTCCA
64 --GTAA-AGTCAAAGTTCGTCCTC--AAATGA-GACAAACAAGGATTCT-AGTCATGA-TCTCCA
* *
74383 TTTTTTTCG-AGATT-GGGAGCTA-AGAACACATTC-CC
121 TTCTTTTCGTA-ATTAGGCA-CTATA-AACACATTCTCC
* * * * * * **
74418 TTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTT
1 -TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAA-GCTTTCTTTCCACCAATTTT
* * * * * * * * *
74483 TATAGAAG-CAATGTTTGTCTCTTAAATAATACAAACAA-AAAT-T-GTCATGCTAATCCCCATT
63 TGTA-AAGTCAAAGTTCGTC-CTCAAATGAGACAAACAAGGATTCTAGTCATG---ATCTCCATT
* * * ** *
74544 CTTTTCATGATTAGGCACCATAAAC-TTTGTCTTC
123 CTTTTCGTAATTAGGCACTATAAACACAT-TCTCC
* * * *
74578 TCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATGT-CACCAATTTT
1 TCATAAGGATACACGA-TATTGATGCTTTGGTTTCGCAAGAAA-GCTTTC-TTTCCACCAATTTT
* * * * *
74642 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGTATTCTAGTAATGATCTTCATTCTTT
63 TGTAAAGTCAAAGTTCGT-CCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTCCATTCTTT
* * *
74707 TTGTGATTAGGCA-TGGTAAACACATTCTCC
127 TCGTAATTAGGCACT-ATAAACACATTCTCC
* *
74737 TCATTAGGATAAACGATATT
1 TCATAAGGATACACGATATT
74757 CACGATTTTC
Statistics
Matches: 815, Mismatches: 219, Indels: 193
0.66 0.18 0.16
Matches are distributed among these distances:
155 1 0.00
156 8 0.01
157 74 0.09
158 236 0.29
159 423 0.52
160 53 0.07
161 15 0.02
162 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (156 bp):
TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGCTTTCTTTCCACCAATTTTTGT
AAAGTCAAAGTTCGTCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTCCATTCTTTTCGT
AATTAGGCACTATAAACACATTCTCC
Found at i:75233 original size:284 final size:284
Alignment explanation
Indices: 74723--75281 Score: 902
Period size: 284 Copynumber: 2.0 Consensus size: 284
74713 TTAGGCATGG
74723 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
* * * * *
74788 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTCTGACAAGCTTCGATTCACGTAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCACGGAAGA
*
74853 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAGACATTCCCTTCATAAGGATACACGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACACGACATTGA
*
74918 TGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
74983 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
**
75007 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
* ** * *
75072 TTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCTCGGAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCACGGAAGA
** * *
75137 GGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACACGACATTGA
* * * * *
75202 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
*
75267 AAATAATACAAACAA
261 AAATAAGACAAACAA
75282 AAATTGTCAT
Statistics
Matches: 251, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
284 251 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACAGAAATCTTTTCT
TTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCACGGAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACACGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:75888 original size:760 final size:761
Alignment explanation
Indices: 74241--76519 Score: 3837
Period size: 761 Copynumber: 3.0 Consensus size: 761
74231 TGTGATTAGG
74241 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
*
74306 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCTCA
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCTCG
74371 GAAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
131 GAAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
74436 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGT
74501 CTCTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
74566 AACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATG
326 AACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
* *
74631 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGTATTCTAGTAATGAT
391 TCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACGAGCATTCTAGTAATGAT
*
74696 CTTCATTCTTTTTGTGATTAGGCATGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACG
456 CTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACG
74761 ATTTTCTTTTGCAC-AGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATA
521 ATTTTCTTTTGCACGA-AAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATA
*
74825 ATTCTGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAG-AC
585 ATTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAG-AGCAC
* * *
74889 ATTCCCTTCATAAGGATACACGACATTGATGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACC
649 ATTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC
* *
74954 GGTTTTCATAGAAGAAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
714 GTTTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
75002 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
*
75067 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCTCG
75132 GAAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
131 GAAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
75197 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGT
*
75262 CTCTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCATA
261 CTCTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
75327 AACTTTGTCTTATCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
75392 TCACCAATTTTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAACGAGCATTCTAGTAATGAT
391 TCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACGAGCATTCTAGTAATGAT
*
75456 CTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAATGATATTCACG
456 CTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACG
75521 ATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
521 ATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
*
75586 TTATGACAAGCTTCGATTCACGTAAGAGGCCCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
586 TTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
*
75651 TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGT
651 TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
**
75716 TTTTGGTAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
716 TTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
75762 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAT-GAAACTC
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAA-TC
* * * * * * * * * * *
75826 TTTTCTTTACGCTATTTTCCATAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
65 TTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCTC
* *** * * * * *
75891 GTAAGAGGCTCCACGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
130 GGAAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA
* * * * *
75956 CATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTG
* *
76021 TCTCCTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
* *
76086 AAACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTT
325 AAACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTT
* *
76151 GTCACCAATTTTTGTAAAGTCTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGA
390 GTCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACGAGCATTCTAGTAATGA
* * * **
76216 TTTTCATTCTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
455 TCTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCAC
* * * * ** *
76281 GATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATA
520 GATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATA
* * * * * *
76346 ATTATGGCAAGCATCGATTCTCGTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACA
585 ATTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACA
* * *
76411 TTCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACCG
650 TTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
* *
76476 TTTTTTATAGAAGTAAAGTTTGACTCTTAAATAAGACAAACAAG
715 TTTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
76520 AATTGTCATG
Statistics
Matches: 1434, Mismatches: 80, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
759 6 0.00
760 704 0.49
761 724 0.50
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (761 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGACAAGCATCGATTCTCG
GAAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGT
CTCTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
TCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACGAGCATTCTAGTAATGAT
CTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACG
ATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
TTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
TTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:75998 original size:284 final size:284
Alignment explanation
Indices: 75483--76042 Score: 868
Period size: 284 Copynumber: 2.0 Consensus size: 284
75473 TTAGGCACGG
*
75483 TAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCACGAAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACGAAAATCTTTTCT
* * * * *
75548 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACGTAAGA
66 TTACCCCATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGTAAGA
* * * *
75613 GGCCCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGACATTGA
131 GGCCCCACGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGACATTGA
* ** *
75678 TGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGTCTCTT
196 TGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTGTCTCCT
75743 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
* *
75767 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAACTCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACGAAAATCTTTTCT
* * * * *
75832 TTACGCTATTTTCCATAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGTAAGA
* * * *
75897 GGCTCCACGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGACATTGA
131 GGCCCCACGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGACATTGA
* *
75962 TGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTGTCTCCT
196 TGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTGTCTCCT
*
76027 AAATAATACAAACAAG
261 AAATAAGACAAACAAG
76043 AATTGTCATG
Statistics
Matches: 248, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
284 248 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACGAAAATCTTTTCT
TTACCCCATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGTAAGA
GGCCCCACGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGACATTGA
TGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTGTCTCCT
AAATAAGACAAACAAGCATGACTA
Found at i:76267 original size:159 final size:158
Alignment explanation
Indices: 76098--77229 Score: 449
Period size: 159 Copynumber: 7.1 Consensus size: 158
76088 ACTTTGTCTT
* *
76098 CTCAAAAGGATACATGATTATTGATGCTTTGGTTT-CATAAGAAAGGCTTTCTTGTCACCAATTT
1 CTCATAAGGATACACGA-TATTGATGCTTTGGTTTGCA-AAGAAAGGCTTTCTTGTCACCAATTT
* ** * *
76162 TTGTAAAGTCTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATTTTCATTCTT
64 TTATAAAGTCAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTCCATTCTT
76227 TTTGAGATTAGGGACTATAAACACATTCTC
129 TTTGAGATTAGGGACTATAAACACATTCTC
* * * * * ** ** * * *
76257 CTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAA-TCGTTTCTTTTC-CC-TTTT
1 CTCATAAGGATACACGATATTGATG-CTTTGGTTTGCAAAGAAAGGC-TTTCTTGTCACCAATTT
* * * * * * * * *
76319 TTCCATAATA-TCAAAATTCAT-CC-CATAATTATGGCAAGC-ATCGATTCTCGT-AGGAGGCTC
64 TT--ATAA-AGTCAAAGTTCGTACCTCA-AATGA-GACAAACGA-GGATTCTAGTAATGA-TCTC
*
76379 CATTCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-C
122 CATTCTTTTTGAGATTAGGGA-CTATA-AACACATTCTC
* * * * * * * **
76415 ATTCAAAAGGGTACATGACATTGATGCTTTGGTGTTGC-AAGAAAATGTTTTCTT-TCCACCGTT
1 -CTCATAAGGATACACGATATTGATGCTTTGGT-TTGCAAAG-AAAGGCTTTCTTGT-CACCAAT
* * * * * * ** * *
76478 TTTTATAGAAGT-AAAGTTTG-ACTCTTAAATAAGACAAACAAGAATTGTCA-TGCTAATCCCCA
62 TTTTATA-AAGTCAAAGTTCGTAC-CTCAAATGAGACAAACGAGGATTCT-AGTAATGATCTCCA
* * * ** *
76540 TT-TTTTTCATGATTAGGCACCATAAAC-TTTGTCTT
124 TTCTTTTTGA-GATTAGGGACTATAAACACAT-TCTC
*
76575 CTCATAAGGATACACGATATTGATTCTTTGGTTT-CGAAAGAAAGGCTTTCTTGTCACCAATTTT
1 CTCATAAGGATACACGATATTGATGCTTTGGTTTGC-AAAGAAAGGCTTTCTTGTCACCAATTTT
* * * *
76639 TGTAAAGTCTAAGTTCGTGA-CTCAAATGAGACAAACGAGGATTCTAGTAATGATTTTCATTCTT
65 TATAAAGTCAAAGTTCGT-ACCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTCCATTCTT
76703 TTTGAGATTAGGGACTATAAACACATTCTC
129 TTTGAGATTAGGGACTATAAACACATTCTC
* * * * * ** ** * * *
76733 CTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAA-TCGTTTCTTTTC-CC-TTTT
1 CTCATAAGGATACACGATATTGATG-CTTTGGTTTGCAAAGAAAGGC-TTTCTTGTCACCAATTT
* * * * * * * * * *
76795 TTCCTTAATA-TCAAAATTCAT-CC-CATAATTATGGCAAGC-ATCGATTCTCGT-AGGAGGCTC
64 TT--ATAA-AGTCAAAGTTCGTACCTCA-AATGA-GACAAACGA-GGATTCTAGTAATGA-TCTC
*
76855 CATTCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-C
122 CATTCTTTTTGAGATTAGGGA-CTATA-AACACATTCTC
* * * * * * * * **
76891 ATGCAAAAGGGTACATGACATTGATGCTTTGGTGTCGC-AAGAAAATGTTTTCTT-TCCACCGTT
1 CT-CATAAGGATACACGATATTGATGCTTTGGT-TTGCAAAG-AAAGGCTTTCTTGT-CACCAAT
* * * * * * ** * *
76954 TTTTTTAGAAGT-AAAGTTTG-ACTCTTAAATAAGACAAACAAGAAGTGTC-A-TGCTAATCCCC
62 TTTTATA-AAGTCAAAGTTCGTAC-CTCAAATGAGACAAACGAGGA-T-TCTAGTAATGATCTCC
* * * ** *
77015 ATTC-TTTTCATGATTAGGCACCATAAAC-TTTGTCTT
123 ATTCTTTTTGA-GATTAGGGACTATAAACACAT-TCTC
* * *
77051 CTCAT-AGGAATACACGATATTGATTCTTTGGTTT-CGTAAGAAAGGCTTTCTTGTCACAAATTT
1 CTCATAAGG-ATACACGATATTGATGCTTTGGTTTGC-AAAGAAAGGCTTTCTTGTCACCAATTT
* * * * * *
77114 TTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTTTT
64 TTATAAAGTCAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTCCATTCTT
*
77179 TTTGTGATTAGGGACTATAAACACATTCTC
129 TTTGAGATTAGGGACTATAAACACATTCTC
* * * *
77209 CTCCTTAGGATAAATGATATT
1 CTCATAAGGATACACGATATT
77230 CACGATTTTC
Statistics
Matches: 687, Mismatches: 200, Indels: 173
0.65 0.19 0.16
Matches are distributed among these distances:
156 2 0.00
157 27 0.04
158 250 0.36
159 354 0.52
160 38 0.06
161 16 0.02
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (158 bp):
CTCATAAGGATACACGATATTGATGCTTTGGTTTGCAAAGAAAGGCTTTCTTGTCACCAATTTTT
ATAAAGTCAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTCCATTCTTTT
TGAGATTAGGGACTATAAACACATTCTC
Found at i:77701 original size:284 final size:284
Alignment explanation
Indices: 77191--77755 Score: 898
Period size: 284 Copynumber: 2.0 Consensus size: 284
77181 TGTGATTAGG
* *
77191 GACTATAAACACATTCTCCTCCTTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * *
77256 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
* *
77321 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
77386 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
*
77451 CTCTTAAATAAGACAAACAAGCAT
261 CTCATAAATAAGACAAACAAGCAT
* *
77475 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * * * *
77540 TTTC-TTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTT
66 TTTCGTTT-CCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTC
* *
77604 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* *
77669 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
*
77734 TCTCATAAATACGACAAACAAG
260 TCTCATAAATAAGACAAACAAG
77756 AATTGTCATG
Statistics
Matches: 256, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
283 3 0.01
284 253 0.99
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
CTCATAAATAAGACAAACAAGCAT
Found at i:78459 original size:284 final size:284
Alignment explanation
Indices: 77949--78511 Score: 937
Period size: 284 Copynumber: 2.0 Consensus size: 284
77939 GTGATTAGGC
77949 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * *
78014 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCACGC
* *
78079 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGATTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
*
78144 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGCAAAGTTTGTC
78209 TCTTAAATAAGACAAACAAGCATG
261 TCTTAAATAAGACAAACAAGCATG
*
78233 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* ** * *
78298 TTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCTCGG
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCACGC
* *
78363 AAGAGGCTCCATTATTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGACA
131 AAGAGGCTCCATGATTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* * * * *
78428 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGCAAAGTTTGTC
*
78493 TCTTAAATAATACAAACAA
261 TCTTAAATAAGACAAACAA
78512 AAATTGTCAT
Statistics
Matches: 258, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 258 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTGCCCCATTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCACGC
AAGAGGCTCCATGATTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGCAAAGTTTGTC
TCTTAAATAAGACAAACAAGCATG
Found at i:79049 original size:760 final size:760
Alignment explanation
Indices: 76715--79749 Score: 4860
Period size: 760 Copynumber: 4.0 Consensus size: 760
76705 TGAGATTAGG
* *
76715 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * *
76780 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* * * * * * *
76845 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATGCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
76910 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTTTAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
*
76975 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
77040 AACTTTGTCTTCTC-ATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGG-ATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
* * * *
77104 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
* * * *
77169 CTTCATTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCCTTAGGATAAATGATATTCACG
455 CTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
* ** *
77234 ATTTTCTTTTGCATGGAAATCATTTCGTTT-CCCTTTTTTCCTTAATATCAAAATTCATCACATA
520 ATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATA
* * *
77298 ATTATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACA
584 ATTATGGCAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
* *
77363 TTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCG
649 TTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
77428 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
714 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
*
77475 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * *
77540 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTTG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* *
77605 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
77670 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
* *
77735 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
77800 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCAAAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
**
77865 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
77930 -T--TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGA
77992 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
* * *
78057 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGGCAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATT
* *
78122 CCCTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
*
78187 TCTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
78232 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * * *
78297 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTAATCCCATAAATATGGCAAGCATCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* ** * *
78362 GAAGAGGCTCCATTATTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
78427 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGTTTTTTATAGAAGCAATGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
* * *
78492 CTCTTAAATAATACAAACAAAAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
78557 AACTTTGTCTTATCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGGATACACGA-TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
*
78622 TCACCAATTTTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAACGAGCATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
** *
78686 CTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAATGATATTCACG
455 CTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
* *
78751 ATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
520 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* * *
78816 TTATGACAAGCTTCGATTCACGTAAGAGGCCCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
585 TTATGGCAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACAT
*
78881 TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGT
650 TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
78946 TTTTGGTAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
715 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
78992 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAT-GAAACTC
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAA-TC
* * * * * *
79056 TTTTCTTTACGCTATTTTCCATAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
65 TTTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTC
* * * *
79121 GTAAGAGGCTCCACGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* *
79186 CATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* *
79251 TCTCCTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
* *
79316 AAACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTT
325 AAACTTTGTCTTCTCAAAAGGATACACGA-TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTT
* *
79381 GTCACCAATTTTTGTAAAGTCTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGA
389 GTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGA
* * *
79446 TTTTCATTCTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
454 TCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
* * * ** *
79511 GATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATA
519 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATA
* * * *
79576 ATTATGGCAAGCATCGATTCTCGTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACA
584 ATTATGGCAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
* * *
79641 TTCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACCG
649 TTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
* *
79706 TTTTTTATAGAAGTAAAGTTTGACTCTTAAATAAGACAAACAAG
714 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
79750 AATTGTCATG
Statistics
Matches: 2102, Mismatches: 165, Indels: 15
0.92 0.07 0.01
Matches are distributed among these distances:
756 3 0.00
757 634 0.30
758 65 0.03
759 5 0.00
760 1082 0.51
761 313 0.15
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (760 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
TATGGCAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATT
CCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:79228 original size:284 final size:284
Alignment explanation
Indices: 78713--79272 Score: 868
Period size: 284 Copynumber: 2.0 Consensus size: 284
78703 TTAGGCACGG
*
78713 TAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCACGAAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACGAAAATCTTTTCT
* * * * *
78778 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACGTAAGA
66 TTACCCCATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGTAAGA
* * * *
78843 GGCCCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGACATTGA
131 GGCCCCACGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGACATTGA
* ** *
78908 TGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGTCTCTT
196 TGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTGTCTCCT
78973 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
* *
78997 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAACTCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACGAAAATCTTTTCT
* * * * *
79062 TTACGCTATTTTCCATAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGTAAGA
* * * *
79127 GGCTCCACGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGACATTGA
131 GGCCCCACGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGACATTGA
* *
79192 TGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTGTCTCCT
196 TGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTGTCTCCT
*
79257 AAATAATACAAACAAG
261 AAATAAGACAAACAAG
79273 AATTGTCATG
Statistics
Matches: 248, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
284 248 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCACGAAAATCTTTTCT
TTACCCCATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGTAAGA
GGCCCCACGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGACATTGA
TGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTGTCTCCT
AAATAAGACAAACAAGCATGACTA
Found at i:79497 original size:159 final size:158
Alignment explanation
Indices: 79328--80459 Score: 449
Period size: 159 Copynumber: 7.1 Consensus size: 158
79318 ACTTTGTCTT
* *
79328 CTCAAAAGGATACATGATTATTGATGCTTTGGTTT-CATAAGAAAGGCTTTCTTGTCACCAATTT
1 CTCATAAGGATACACGA-TATTGATGCTTTGGTTTGCA-AAGAAAGGCTTTCTTGTCACCAATTT
* ** * *
79392 TTGTAAAGTCTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATTTTCATTCTT
64 TTATAAAGTCAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTCCATTCTT
79457 TTTGAGATTAGGGACTATAAACACATTCTC
129 TTTGAGATTAGGGACTATAAACACATTCTC
* * * * * ** ** * * *
79487 CTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAA-TCGTTTCTTTTC-CC-TTTT
1 CTCATAAGGATACACGATATTGATG-CTTTGGTTTGCAAAGAAAGGC-TTTCTTGTCACCAATTT
* * * * * * * * *
79549 TTCCATAATA-TCAAAATTCAT-CC-CATAATTATGGCAAGC-ATCGATTCTCGT-AGGAGGCTC
64 TT--ATAA-AGTCAAAGTTCGTACCTCA-AATGA-GACAAACGA-GGATTCTAGTAATGA-TCTC
*
79609 CATTCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-C
122 CATTCTTTTTGAGATTAGGGA-CTATA-AACACATTCTC
* * * * * * * **
79645 ATTCAAAAGGGTACATGACATTGATGCTTTGGTGTTGC-AAGAAAATGTTTTCTT-TCCACCGTT
1 -CTCATAAGGATACACGATATTGATGCTTTGGT-TTGCAAAG-AAAGGCTTTCTTGT-CACCAAT
* * * * * * ** * *
79708 TTTTATAGAAGT-AAAGTTTG-ACTCTTAAATAAGACAAACAAGAATTGTCA-TGCTAATCCCCA
62 TTTTATA-AAGTCAAAGTTCGTAC-CTCAAATGAGACAAACGAGGATTCT-AGTAATGATCTCCA
* * * ** *
79770 TT-TTTTTCATGATTAGGCACCATAAAC-TTTGTCTT
124 TTCTTTTTGA-GATTAGGGACTATAAACACAT-TCTC
*
79805 CTCATAAGGATACACGATATTGATTCTTTGGTTT-CGAAAGAAAGGCTTTCTTGTCACCAATTTT
1 CTCATAAGGATACACGATATTGATGCTTTGGTTTGC-AAAGAAAGGCTTTCTTGTCACCAATTTT
* * * *
79869 TGTAAAGTCTAAGTTCGTGA-CTCAAATGAGACAAACGAGGATTCTAGTAATGATTTTCATTCTT
65 TATAAAGTCAAAGTTCGT-ACCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTCCATTCTT
79933 TTTGAGATTAGGGACTATAAACACATTCTC
129 TTTGAGATTAGGGACTATAAACACATTCTC
* * * * * ** ** * * *
79963 CTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAA-TCGTTTCTTTTC-CC-TTTT
1 CTCATAAGGATACACGATATTGATG-CTTTGGTTTGCAAAGAAAGGC-TTTCTTGTCACCAATTT
* * * * * * * * * *
80025 TTCCTTAATA-TCAAAATTCAT-CC-CATAATTATGGCAAGC-ATCGATTCTCGT-AGGAGGCTC
64 TT--ATAA-AGTCAAAGTTCGTACCTCA-AATGA-GACAAACGA-GGATTCTAGTAATGA-TCTC
*
80085 CATTCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-C
122 CATTCTTTTTGAGATTAGGGA-CTATA-AACACATTCTC
* * * * * * * * **
80121 ATGCAAAAGGGTACATGACATTGATGCTTTGGTGTCGC-AAGAAAATGTTTTCTT-TCCACCGTT
1 CT-CATAAGGATACACGATATTGATGCTTTGGT-TTGCAAAG-AAAGGCTTTCTTGT-CACCAAT
* * * * * * ** * *
80184 TTTTTTAGAAGT-AAAGTTTG-ACTCTTAAATAAGACAAACAAGAAGTGTC-A-TGCTAATCCCC
62 TTTTATA-AAGTCAAAGTTCGTAC-CTCAAATGAGACAAACGAGGA-T-TCTAGTAATGATCTCC
* * * ** *
80245 ATTC-TTTTCATGATTAGGCACCATAAAC-TTTGTCTT
123 ATTCTTTTTGA-GATTAGGGACTATAAACACAT-TCTC
* * *
80281 CTCAT-AGGAATACACGATATTGATTCTTTGGTTT-CGTAAGAAAGGCTTTCTTGTCACAAATTT
1 CTCATAAGG-ATACACGATATTGATGCTTTGGTTTGC-AAAGAAAGGCTTTCTTGTCACCAATTT
* * * * * *
80344 TTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTTTT
64 TTATAAAGTCAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTCCATTCTT
*
80409 TTTGTGATTAGGGACTATAAACACATTCTC
129 TTTGAGATTAGGGACTATAAACACATTCTC
* * * *
80439 CTCCTTAGGATAAATGATATT
1 CTCATAAGGATACACGATATT
80460 CACGATTTTC
Statistics
Matches: 687, Mismatches: 200, Indels: 173
0.65 0.19 0.16
Matches are distributed among these distances:
156 2 0.00
157 27 0.04
158 250 0.36
159 354 0.52
160 38 0.06
161 16 0.02
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (158 bp):
CTCATAAGGATACACGATATTGATGCTTTGGTTTGCAAAGAAAGGCTTTCTTGTCACCAATTTTT
ATAAAGTCAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTCCATTCTTTT
TGAGATTAGGGACTATAAACACATTCTC
Found at i:80036 original size:476 final size:476
Alignment explanation
Indices: 78992--80701 Score: 2782
Period size: 476 Copynumber: 3.6 Consensus size: 476
78982 AAACAAGCAT
*
78992 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCA-TGAAACTC
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAA-TC
* * * * * * * * * * *
79056 TTTTCTTTACGCTATTTTCCATAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
65 GTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTC
** * * * * * *
79121 GTAAGAGGCTCCACGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
130 GTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGA
* *
79186 CATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* * *
79251 TCTCCTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 ACTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
* * *
79316 AAACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTC-ATAAGAAAGGCTTTCT
325 AAACTTTGTCTTCTCATAAGGATACACGA-TATTGATTCTTTGGTTTCGA-AAGAAAGGCTTTCT
*
79380 TGTCACCAATTTTTGTAAAGTCTTAGTTCGT-ACCTCAAATGAGACAAACGAGGATTCTAGTAAT
388 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGA-CTCAAATGAGACAAACGAGGATTCTAGTAAT
79444 GATTTTCATTCTTTTTGAGATTAGG
452 GATTTTCATTCTTTTTGAGATTAGG
79469 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
79534 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* *
79599 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
79664 ATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
*
79729 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
79794 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
79859 CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
79924 TTCATTCTTTTTGAGATTAGG
456 TTCATTCTTTTTGAGATTAGG
79945 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
*
80010 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* * *
80075 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATGCAAAAGGGTACATGAC
131 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
80140 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTTTAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
*
80205 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
80270 AACTTTGTCTTCTCAT-AGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCATAAGG-ATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTG
* * * * *
80334 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGAT
* * *
80399 CTTCATTTTTTTTGTGATTAGG
455 TTTCATTCTTTTTGAGATTAGG
* * * *
80421 GACTATAAACACATTCTCCTCCTTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * *
80486 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* *
80551 TAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
131 TAAGAGGCTCCAT-TCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGA
* *
80615 CATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
*
80680 TCTCTTAAATAAGACAAACAAG
260 ACTCTTAAATAAGACAAACAAG
80702 CATGACTATA
Statistics
Matches: 1164, Mismatches: 64, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
475 3 0.00
476 837 0.72
477 320 0.27
478 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
TTCATTCTTTTTGAGATTAGG
Found at i:80931 original size:284 final size:284
Alignment explanation
Indices: 80421--80985 Score: 898
Period size: 284 Copynumber: 2.0 Consensus size: 284
80411 TGTGATTAGG
* *
80421 GACTATAAACACATTCTCCTCCTTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * *
80486 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
* *
80551 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
80616 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
*
80681 CTCTTAAATAAGACAAACAAGCAT
261 CTCATAAATAAGACAAACAAGCAT
* *
80705 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * * * *
80770 TTTC-TTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTT
66 TTTCGTTT-CCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTC
* *
80834 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* *
80899 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
*
80964 TCTCATAAATACGACAAACAAG
260 TCTCATAAATAAGACAAACAAG
80986 AATTGTCATG
Statistics
Matches: 256, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
283 3 0.01
284 253 0.99
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
CTCATAAATAAGACAAACAAGCAT
Found at i:81690 original size:284 final size:284
Alignment explanation
Indices: 81179--81742 Score: 905
Period size: 284 Copynumber: 2.0 Consensus size: 284
81169 GTGATTAGGC
81179 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * *
81244 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
81309 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
* * *
81374 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAAAAGTAAAGTTTGTC
*
81439 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
**
81463 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * *** * *
81528 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
81593 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAG-GACACGTTCCCTTCATAAGGATACATGAC
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAG-CACATTCCCTTCATAAGGATACATGAC
* * * *
81657 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAAAAGTAAAGTTTGT
195 ATTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAAAAGTAAAGTTTGT
*
81722 CTCATAAATATGACAAACAAG
260 CTCATAAATAAGACAAACAAG
81743 AATTGTCATG
Statistics
Matches: 256, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
283 1 0.00
284 255 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAAAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:82302 original size:760 final size:760
Alignment explanation
Indices: 79945--86014 Score: 10733
Period size: 760 Copynumber: 8.0 Consensus size: 760
79935 TGAGATTAGG
* * *
79945 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * * * * * * *
80010 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* * * * * * *
80075 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATGCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* * *
80140 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTTTAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* * *
80205 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
80270 AACTTTGTCTTCTCAT-AGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCATAAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
* * * *
80334 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
* * * * * *
80399 CTTCATTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCCTTAGGATAAATGATATTCACG
455 CTTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
* ** *
80464 ATTTTCTTTTGCATGGAAATCATTTCGTTT-CCCTTTTTTCCTTAATATCAAAATTCATCACATA
520 ATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATA
* * * * * *
80528 ATTATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACA
584 ATTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACA
*
80593 TTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCG
649 TTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
80658 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
714 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
* *
80705 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * * *
80770 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTTG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* *
80835 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
*
80900 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
*
80965 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
81030 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
**
81095 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
81160 -T--TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
81222 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
81287 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
*
81352 CCCTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
*
81417 TCTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
81462 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
**
81527 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
*
81592 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGGACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* * *
81657 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAAAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
81722 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
81787 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
*
81852 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* *
81917 TTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGGTAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
81982 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
82047 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
82112 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
* *
82177 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAATACAAATAAGCAT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
* *
82222 GACTATAAACACAATCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTCCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
82287 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* **
82352 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATTACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
*
82417 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* *
82482 CTCATAAATATGAGAAACAAGAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
82547 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTTT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
82612 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* * *
82677 TACATTCTTTTTGTGATTAGGCATGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
82742 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
82807 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
*
82872 CCCTTAATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
* *
82937 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGGCAAACAAGCTT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
82982 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
*
83047 TTTCTTTTCGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
*
83112 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* *
83177 ATTGATGCTTTTGG-GTCGCAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAACTTTG
196 ATTGATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
*
83241 TCTCATAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
*
83306 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTT
325 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
*
83371 TCACCAATTTTTGTAAAGTCTAATTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
* *
83436 CTACATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACA
455 CTTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
83501 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
520 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* *
83566 TTATGTCAAGCTTCCATTCACGCAAGAGGCTCCATGCATTTCGAGATTGGGAGCTAAGAGCACAT
585 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
83631 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
650 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
83696 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCTT
715 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
83742 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
83807 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCAT-CCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* *
83871 TAATAGGCTCCATGCTTTTGGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* *
83936 ATTTATGCTTTTGG-GTCGCAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTG
196 ATTGATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
*
84000 TCTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
84065 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
325 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
**
84130 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
84195 C-T--TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
455 CTTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
84257 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
520 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
84322 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
585 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
*
84387 TCCCTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
650 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
84452 TTCTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
715 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
*
84498 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCACGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
**
84563 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
84628 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* * *
84693 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTTTTTCCACTATTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
84758 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
84823 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
*
84888 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* *
84953 TTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGGTAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
85018 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
85083 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
85148 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
* *
85213 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAATACAAATAAGCAT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
85258 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
**
85323 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
85388 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* *
85453 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
*
85518 CTCATAAATATGACAAACAAGAATCGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
85583 AACTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
*
85648 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* * * **
85713 TTCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGA
456 TTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
* * *
85778 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCTATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
* * * * *
85843 TATGACAGGCTTCGATT-ATCGTAGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACAT
586 TATGTCAAGCTTCGATTCA-CGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
* *
85907 TCCATTCATGAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
650 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
85972 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
715 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
86015 AATGGTCATG
Statistics
Matches: 5110, Mismatches: 188, Indels: 24
0.96 0.04 0.00
Matches are distributed among these distances:
756 402 0.08
757 1049 0.21
758 2 0.00
759 345 0.07
760 3304 0.65
761 8 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (760 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:82453 original size:284 final size:284
Alignment explanation
Indices: 81943--82491 Score: 900
Period size: 284 Copynumber: 1.9 Consensus size: 284
81933 TTAGGCACGG
* * *
81943 TAAACACATTCTCCTCATTAGGGTAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACAATCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTTTTCT
* * *
82008 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
82073 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
*
82138 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
82203 AAATAATACAAATAAGCATGACTA
261 AAATAATACAAATAAGCATGACTA
**
82227 TAAACACAATCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTCCATGGAAATCTTTTCT
1 TAAACACAATCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTTTTCT
* * * * * *
82292 TTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
* ** *
82357 GGCTCCATGCTTTTTGAGATTGGGAGCTAAGATTACGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
* * *
82422 TGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTCTCAT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
82487 AAATA
261 AAATA
82492 TGAGAAACAA
Statistics
Matches: 243, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 243 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (284 bp):
TAAACACAATCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAATACAAATAAGCATGACTA
Found at i:83213 original size:284 final size:284
Alignment explanation
Indices: 82703--83262 Score: 915
Period size: 284 Copynumber: 2.0 Consensus size: 284
82693 TTAGGCATGG
82703 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* *
82768 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
*
82833 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTAATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTAATAAGGATACATGACATTGA
* *
82898 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAACTTTGTCTCAT
*
82963 AAATAAGGCAAACAAGCTTGACTA
261 AAATAAGACAAACAAGCTTGACTA
**
82987 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * * *
83052 TTTCGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
* * *
83117 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTAATAAGGATACATGACATTGA
* * *
83182 TGCTTTTGG-GTCGCAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAACTTTGTCTCA
196 TGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAACTTTGTCTCA
83246 TAAATAAGACAAACAAG
260 TAAATAAGACAAACAAG
83263 AATTGTCATG
Statistics
Matches: 254, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
284 249 0.98
285 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTAATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAACTTTGTCTCAT
AAATAAGACAAACAAGCTTGACTA
Found at i:84732 original size:284 final size:284
Alignment explanation
Indices: 84215--84778 Score: 903
Period size: 284 Copynumber: 2.0 Consensus size: 284
84205 GTGATTAGGC
*
84215 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCACGGAAATCTT
* * *
84280 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
84345 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
84410 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
84475 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
**
84499 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCACGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCACGGAAATCTT
* * * *** * *
84564 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
84629 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* * * * *
84694 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTTTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
84759 TCATAAATATGACAAACAAG
261 TCATAAATAAGACAAACAAG
84779 AATTGTCATG
Statistics
Matches: 255, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
284 255 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCACGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:85489 original size:284 final size:284
Alignment explanation
Indices: 84979--85527 Score: 909
Period size: 284 Copynumber: 1.9 Consensus size: 284
84969 TTAGGCACGG
*
84979 TAAACACATTCTCCTCATTAGGGTAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
85044 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
*
85109 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * *
85174 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGTCTCAT
85239 AAATAATACAAATAAGCATGACTA
261 AAATAATACAAATAAGCATGACTA
**
85263 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * * *** * *
85328 TTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
*
85393 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
85458 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTCTCAT
196 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGTCTCAT
85523 AAATA
261 AAATA
85528 TGACAAACAA
Statistics
Matches: 244, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 244 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAATACAAATAAGCATGACTA
Found at i:85723 original size:158 final size:156
Alignment explanation
Indices: 85436--86723 Score: 502
Period size: 159 Copynumber: 8.1 Consensus size: 156
85426 CACGTTCCCT
* * * * * *
85436 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTT
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTTCTTT-CACCAATTTTT
* * * * *
85501 ATAGAAGT-AAAGTT--TGTCTCATAAAT-ATGACAAACAAGAATC--GTCATGCTAATCCCCAT
64 GTA-AAGTCAAAGTTCGTGCCTC--AAATGA-GACAAACAGGATTCTAGTCATG---ATCTCCAT
**
85560 TCTTTTCATGATTAGGCACCATAAAC-TTTGTCTCC
122 TCTTTTCATGATTAGGCACCATAAACACAT-TCTCC
* * *
85595 TCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTG
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-TCACCAATTTTTG
* * *
85660 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTT
65 TAAAGTCAAAGTTCGTGCCTCAAATGAGACAAAC-AGGATTCTAGTCATGATCTCCATTCTTTTC
* * *
85725 GTAATTAGGCACTATAAACACATTCTCC
129 ATGATTAGGCACCATAAACACATTCTCC
* * * * * ** * * ** *
85753 TCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCCATTTTC
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTT-CACCAATTTT-
* * * * ** ** * * * *
85817 CT-TATTA-TCAAAATTCAT-CCT-ATAATTATGACAGGCTTCGATTATCGT-AGGAGGCTCCAT
63 -TGTA-AAGTCAAAGTTCGTGCCTCA-AATGA-GACAAAC-AGGATTCTAGTCATGA-TCTCCAT
* * * *
85877 GCTTTTCGA-GATT-GGGAGC-TAAGAACACATTC-CAT
122 TCTTTTC-ATGATTAGGCACCAT-A-AACACATTCTC-C
* * * * * * *
85912 TCATGAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTT
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTTCTTT-CACCAATTTTT
* * * * * *
85976 GATAGAAGT-AAAGTTTGT-CTCTTAAATAAGACAAACAAGA--ATGGTCATGCTAATC-CCTAT
64 G-TA-AAGTCAAAGTTCGTGC-CTCAAATGAGACAAACAGGATTCTAGTCATG---ATCTCC-AT
* ** *
86036 TTTTTTCATGATTAGGCACCATAAAC-TTTGTCTTC
122 TCTTTTCATGATTAGGCACCATAAACACAT-TCTCC
* * **
86071 TCAT-AGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCATAAATTTTT
1 TCATAAGG-ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-TCACCAATTTTT
** *
86135 GTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTTCATT-TTTT
64 GTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAAC-AGGATTCTAGTCATGATCTCCATTCTTTT
** * *
86199 TGTGATTAGGGACTATAAACACATTCTCC
128 CATGATTAGGCACCATAAACACATTCTCC
* * * * * ** * * * *
86228 TCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAA-TCTTTTCTTTTC-CC-TTTTT
1 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCA-AGAAAGGC-TTTC-TTTCACCAATTTT
* * * * * * * * * *
86290 TCCTTAATA-TCAAAATTCAT-CC-CATAATTATGGCAAGCATCGATTCTCGT-AAGAGGCTCCA
63 T--GTAA-AGTCAAAGTTCGTGCCTCA-AATGA-GACAAACA-GGATTCTAGTCATGA-TCTCCA
* *
86351 TTCTTTTCGA-GATT-GGGAGC-TAAGAACACATTC-CC
121 TTCTTTTC-ATGATTAGGCACCAT-A-AACACATTCTCC
* * * ** * * **
86386 TTCATAAGGGTACAAGACATTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
1 -TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTTCTTT-CACCAATTTT
* * * * * * *
86451 TATAGAAGT-AAAGTT--TGCTCTTAAATAATACAAACAAGAAT-T-GTCATGCTAATCCCCATT
63 TGTA-AAGTCAAAGTTCGTGC-CTCAAATGAGACAAACAGGATTCTAGTCATG---ATCTCCATT
** *
86511 CTTTTCATGATTAGGCACCATAAAC-TTTGTCTTC
123 CTTTTCATGATTAGGCACCATAAACACAT-TCTCC
* * * *
86545 TCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATGTCACCAATTTTT
1 TCATAAGGATACACGA-TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC-TTTCACCAATTTTT
* * *
86610 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCTTCATTCTTTT
64 GTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAAC-AGGATTCTAGTCATGATCTCCATTCTTTT
** ***
86675 TGTGATTAGGCATGGTAAACACATTCTCC
128 CATGATTAGGCACCATAAACACATTCTCC
* *
86704 TCATTAGGATAAACGATATT
1 TCATAAGGATACACGATATT
86724 CACGATTTTC
Statistics
Matches: 820, Mismatches: 217, Indels: 185
0.67 0.18 0.15
Matches are distributed among these distances:
155 2 0.00
156 14 0.02
157 83 0.10
158 300 0.37
159 355 0.43
160 39 0.05
161 22 0.03
162 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (156 bp):
TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTTCACCAATTTTTGT
AAAGTCAAAGTTCGTGCCTCAAATGAGACAAACAGGATTCTAGTCATGATCTCCATTCTTTTCAT
GATTAGGCACCATAAACACATTCTCC
Found at i:86151 original size:476 final size:475
Alignment explanation
Indices: 85259--86965 Score: 2756
Period size: 476 Copynumber: 3.6 Consensus size: 475
85249 AATAAGCATG
* *
85259 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* * * * *** * *
85324 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
*
85389 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* **
85454 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
* *
85519 TCATAAATATGACAAACAAGAATCGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATCGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* *
85584 ACTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCAT-AGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
85649 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
390 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
*
85714 TCATTCTTTTTGTAATTAGGC
455 TCATTCTTTTTGTGATTAGGC
* *
85735 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGAAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* * *
85800 TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCTATAATTATGACAGGCTTCGATTATCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
* * *
85865 AGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATGAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
*
85930 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
* * *
85995 TCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTTTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATCGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
86060 ACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
** * *
86125 ATAAATTTTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCT
390 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
*
86190 TCATT-TTTTTGTGATTAGGG
455 TCATTCTTTTTGTGATTAGGC
*
86210 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* ** * * *
86275 TTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
* * *
86340 AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACAAGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
*
86405 TTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG-C
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
* *
86469 TCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATCGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* * * *
86534 ACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATGT
326 ACTTTGTCTTCTC-ATAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
*
86599 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
389 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATC
86664 TTCATTCTTTTTGTGATTAGGC
454 TTCATTCTTTTTGTGATTAGGC
*
86686 A-TGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCT
1 ACT-ATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCT
* *
86750 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCA-C
65 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATT-ATC
* * *
86814 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATCAGGATACACGA
129 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* * *
86879 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
86944 TCTCTTAAATAAGACAAACAAG
259 TCTCTTAAATAAGACAAACAAG
86966 CATGACTATA
Statistics
Matches: 1139, Mismatches: 85, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
474 83 0.07
475 359 0.32
476 677 0.59
477 20 0.02
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATCGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTT
CATTCTTTTTGTGATTAGGC
Found at i:87200 original size:284 final size:284
Alignment explanation
Indices: 86690--87249 Score: 940
Period size: 284 Copynumber: 2.0 Consensus size: 284
86680 TTAGGCATGG
*
86690 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
1 TAAACACATTCTCCCCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
* * ** *
86755 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCAACCCAAAACAATGACAAGCTTCGATTCACGTAAGA
*
86820 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATCAGGATACACGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTAATCAGGATACACGACATTGA
86885 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
86950 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
*
86974 TAAACACATTCTCCCCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCCCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
* * ** *
87039 TTACGCTATTTTCCTTAATATCAAAATTCAACCCGTAACAATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCAACCCAAAACAATGACAAGCTTCGATTCACGTAAGA
* * * *
87104 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTAATGAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTAATCAGGATACACGACATTGA
* * *
87169 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGGTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
87234 AAATAAGACAAACAAG
261 AAATAAGACAAACAAG
87250 AATTGTCATG
Statistics
Matches: 256, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
284 256 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (284 bp):
TAAACACATTCTCCCCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCAACCCAAAACAATGACAAGCTTCGATTCACGTAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTAATCAGGATACACGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGAAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:87861 original size:475 final size:475
Alignment explanation
Indices: 86969--88200 Score: 2025
Period size: 475 Copynumber: 2.6 Consensus size: 475
86959 AAACAAGCAT
*
86969 GACTATAAACACATTCTCCCCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * **
87034 TTTCTTTACGCTATTTTCCTTAATATCAAAATTCAACCCGTAACAATGACAAGCTTCGATTCTCG
66 TTTCTTTACCCT-TTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * *
87099 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTAATGAGGATACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
87164 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCGCCGGTTTTGATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGT
*
87229 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
260 CTCTTAAATAAGGCAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
87294 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
325 AACTTTGTCTTCTCATAAGAATACACGATATTGAATCTTTGCTTTCGAAAGAAAGGCTTTCTTGT
*
87359 CACCAATTTTTGTAAAGTCTTAGTTCGTGCCTCAAAAGAGACAAACGAGGATTCTAGTAATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACGAGGATTCTAGTAATGATC
87424 TTCATTCTTTTTGTGATTAGG
455 TTCATTCTTTTTGTGATTAGG
*
87445 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * *
87510 TTTCTTTTCCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCGT
66 TTTCTTTACCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * * * * *
87575 AGGAGGCACCATTCTTTCCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGGTACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
87640 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGTC
87705 TCTTAAATAAGGCAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGGCAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
*
87770 ACTTTGTCTTCTCATAAGGATACACGATATTGAATCTTTGCTTTCGAAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAAGAATACACGATATTGAATCTTTGCTTTCGAAAGAAAGGCTTTCTTGTC
* *
87835 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGTTCT
391 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACGAGGATTCTAGTAATGATCT
87900 TCATTCTTTTTGTGATTAGG
456 TCATTCTTTTTGTGATTAGG
* ** *
87920 CACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * *
87985 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACG
66 TTTCTTT-ACCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* *
88050 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACACGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
88115 ATTGATGCTTTGGTGTCGCAATAAAATGTTTTTTTTCCACCGGTTTTCATAGAAGTAAAGCTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGT
88180 CTCTTAAATAAGAG-AAACAAG
260 CTCTTAAATAAG-GCAAACAAG
88201 CATGACTATA
Statistics
Matches: 699, Mismatches: 55, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
475 439 0.63
476 259 0.37
477 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (475 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTACCCTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGTC
TCTTAAATAAGGCAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAAGAATACACGATATTGAATCTTTGCTTTCGAAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACGAGGATTCTAGTAATGATCT
TCATTCTTTTTGTGATTAGG
Found at i:88453 original size:284 final size:284
Alignment explanation
Indices: 87925--88768 Score: 1418
Period size: 284 Copynumber: 3.0 Consensus size: 284
87915 TTAGGCACGG
* *
87925 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * * *** * * *
87990 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACGTAAGA
66 TTACGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
* *
88055 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACACGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * * * * *
88120 TGCTTTGGTGTCGCAATAAAATGTTTTTTTTCCACCGGTTTTCATAGAAGTAAAGCTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
88185 AAATAAGAGAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
*
88209 TAAACACATTCCCCTCATTATGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
88274 TTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
*
88339 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
88404 TGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGAAGCAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
*
88469 AAATAAGACAAACAAGCATGTCTA
261 AAATAAGACAAACAAGCATGACTA
88493 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
88558 TTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
*
88623 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
88688 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
88753 AAATAAGACAAACAAG
261 AAATAAGACAAACAAG
88769 AATTGTCATG
Statistics
Matches: 524, Mismatches: 36, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
284 524 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
TTACGCTATTTTCCTTAATATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:89382 original size:476 final size:475
Alignment explanation
Indices: 88490--89719 Score: 2097
Period size: 476 Copynumber: 2.6 Consensus size: 475
88480 ACAAGCATGT
*
88490 CTATAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* * *** * *
88555 TCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGTA
66 TCTTTACCCTATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGTA
*
88620 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
88685 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCT
*
88750 CTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
261 CTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
*
88815 CTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTCA
326 CTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
* *
88880 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTT
391 CAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTT
88945 CATTCTTTTTGTAATTAAGCA
456 CATT-TTTTTGTAATTAAGCA
* *
88966 CTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* * * *
89031 TCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTATCGTA
66 TCTTTACCCTATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGTA
* *
89096 GGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGACAT
131 AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
89161 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCT
*
89226 CTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAAA
261 CTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
*
89291 CTTTGTCTTCTCAT-AGGAATACACGGA-ATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 CTTTGTCTCCTCATAAGG-ATACAC-GATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
*
89354 CATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATC
389 CACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATC
* * *
89419 TTCATTTTTTTGTGATTAGGGA
454 TTCATTTTTTTGTAATTAAGCA
89441 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
* *
89506 TCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCA-CGT
66 TCTTTACCCTATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATT-ATCGT
* *
89570 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGACA
130 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* * *
89635 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGTC
195 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTC
89700 TCTTAAATAAGACAAACAAG
260 TCTTAAATAAGACAAACAAG
89720 CATGACTATA
Statistics
Matches: 710, Mismatches: 41, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
475 279 0.39
476 429 0.60
477 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTT
TCTTTACCCTATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTATCGTA
AGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACAT
TGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCT
CTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAA
CTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
CAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCTT
CATTTTTTTGTAATTAAGCA
Found at i:89973 original size:283 final size:284
Alignment explanation
Indices: 89439--90002 Score: 889
Period size: 283 Copynumber: 2.0 Consensus size: 284
89429 TGTGATTAGG
*
89439 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAAACT
* * * * * *
89504 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACG
66 TTTCTTTACCCTATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCACG
* * *
89569 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGAC
* **
89634 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGT
196 ATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTGT
*
89699 CTCTTAAATAAGACAAACAAGCAT
261 CTCCTAAATAAGACAAACAAGCAT
89723 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAT-GAAACAC
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAA-AC
* * * *
89787 TTTTCTTTACGCTATTTTCCATAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
65 TTTTCTTTACCCTATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCAC
* * *
89852 GTAA-AGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
130 GTAAGAGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGA
* *
89916 CATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
195 CATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTG
*
89981 TCTCCTAAATAATACAAACAAG
260 TCTCCTAAATAAGACAAACAAG
90003 AATTGTCATG
Statistics
Matches: 255, Mismatches: 24, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
283 138 0.54
284 117 0.46
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.34
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAAACT
TTTCTTTACCCTATTTTCCATAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTCACG
TAAGAGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACATTCCCTTCAAAAGGATACATGAC
ATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGAAAGAAGTAAAGTTTGT
CTCCTAAATAAGACAAACAAGCAT
Found at i:90423 original size:760 final size:759
Alignment explanation
Indices: 88965--90479 Score: 2446
Period size: 760 Copynumber: 2.0 Consensus size: 759
88955 GTAATTAAGC
* * *
88965 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAAACTT
* * * * *
89030 TTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTATCGT
66 TTCTTTACCCCATTTTCATTAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTATCGT
* * *
89095 AGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGACA
131 AGAAGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACATTCCATTCATAAGGATACATGACA
* * *
89160 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTC
196 TTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTGTC
* *
89225 TCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCATAA
261 TCCTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* * *
89290 ACTTTGTCTTCTCATAGGAATACACGGAATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCAAAGGAATACACGGAATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGTC
* * *
89355 ATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCT
391 ACAAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACAAGGATTCTAGTAATGATCT
*
89420 TCATTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATT
456 TCATTTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATT
* * *
89485 TTCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTA
521 TTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTA
* * *
89550 TGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
586 TGACAAGCATCGATTCACATAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
*
89615 CTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTT
651 ATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTT
* *
89680 TGGTAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
716 TGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAACAAGCATG
89724 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAT-GAAACACT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAA-ACT
* * * * *
89788 TTTCTTTACGCTATTTTCCA-TAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
65 TTTCTTTACCCCATTTT-CATTAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTATC
* * *
89852 GTA-AAGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
129 GTAGAAGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACATTCCATTCATAAGGATACATGA
*
89916 CATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
194 CATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTG
* *
89981 TCTCCTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
259 TCTCCTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
*
90046 AAACTTTGTCTTCTCAAAAGG-ATACA-TGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTC
324 AAACTTTGTCTTCTC-AAAGGAATACACGGA--ATTGATGCTTTGGTTTCATAAGAAAGGCTTTC
* * *
90109 TTGTCACCAATTTTTGTAAAGTCTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAAT
386 TTGTCACAAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACAAGGATTCTAGTAAT
*
90174 GATTTTCATTCTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
451 GATCTTCATT-TTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
90239 ACGATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCA
515 ACGATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCA
* * * *
90304 TAATTATGGCAAGCATCGATTCTCATAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACA
580 TAATTATGACAAGCATCGATTCACATAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACA
* *
90369 CATTCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCAC
645 CATTCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCAC
*
90434 CGTTTTTTATAGAAGTAAAGTTTGACTCTTAAATAAGACAAACAAG
710 CGTTTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAACAAG
90480 AATTGTCATG
Statistics
Matches: 695, Mismatches: 55, Indels: 11
0.91 0.07 0.01
Matches are distributed among these distances:
757 2 0.00
758 201 0.29
759 212 0.31
760 280 0.40
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (759 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAAACTT
TTCTTTACCCCATTTTCATTAACAACAAAATTCATCCCATAACTATGACAAGCTTCGATTATCGT
AGAAGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACATTCCATTCATAAGGATACATGACA
TTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTGTC
TCCTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCAAAGGAATACACGGAATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGTC
ACAAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACAAGGATTCTAGTAATGATCT
TCATTTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATT
TTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTA
TGACAAGCATCGATTCACATAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
ATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTT
TGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAACAAGCATG
Found at i:90631 original size:476 final size:476
Alignment explanation
Indices: 89723--91431 Score: 2782
Period size: 476 Copynumber: 3.6 Consensus size: 476
89713 AAACAAGCAT
* *
89723 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCA-TGAAACAC
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAA-TC
* * * * * * * * * * *
89787 TTTTCTTTACGCTATTTTCCATAACAACCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
65 GTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTC
* * * * * * * *
89852 GTA-AAGGCTCCATGCTTTTCGAGACTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
130 GTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGA
* *
89916 CATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* * *
89981 TCTCCTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 ACTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
* * *
90046 AAACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTC-ATAAGAAAGGCTTTCT
325 AAACTTTGTCTTCTCATAAGGATACACGA-TATTGATTCTTTGGTTTCGA-AAGAAAGGCTTTCT
*
90110 TGTCACCAATTTTTGTAAAGTCTTAGTTCGT-ACCTCAAATGAGACAAACGAGGATTCTAGTAAT
388 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGA-CTCAAATGAGACAAACGAGGATTCTAGTAAT
90174 GATTTTCATTCTTTTTGAGATTAGG
452 GATTTTCATTCTTTTTGAGATTAGG
90199 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
*
90264 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCA
66 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
*
90329 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
90394 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
*
90459 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
90524 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
90589 CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
90654 TTCATTCTTTTTGAGATTAGG
456 TTCATTCTTTTTGAGATTAGG
* *
90675 GACTGTAAACACATTCTCCTCATTAGGATAAACGATATTCCCGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
*
90740 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
*
90805 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
90870 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
*
90935 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
91000 AACTTTGTCTTCTCAT-AGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCATAAGG-ATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTG
* * * * *
91064 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGAT
* * *
91129 CTTCATTTTTTTTGTGATTAGG
455 TTTCATTCTTTTTGAGATTAGG
* * *
91151 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * *
91216 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* * *
91281 TAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
131 TAGGAGGCTCCAT-TCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGA
* *
91345 CATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
*
91410 TCTCTTAAATAAGACAAACAAG
260 ACTCTTAAATAAGACAAACAAG
91432 CATGACTATA
Statistics
Matches: 1164, Mismatches: 63, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
475 3 0.00
476 951 0.82
477 210 0.18
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
TTCATTCTTTTTGAGATTAGG
Found at i:90697 original size:158 final size:157
Alignment explanation
Indices: 90058--91189 Score: 444
Period size: 159 Copynumber: 7.1 Consensus size: 157
90048 ACTTTGTCTT
* *
90058 CTCAAAAGGATACATGATTATTGATGCTTTGGTTTC-ATAAGAAAGGCTTTCTTGTCACCAATTT
1 CTCATAAGGATACACGA-TATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTCTTGTCACCAATTT
* ** * *
90122 TTGTAAAGTCTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCT-AGTAATGATTTTCATTCT
64 TTATAAAGTCAAAGTTCGTA-CTCAAATGAGACAAACGAGGATTCTCA-TAATGATCTCCATTCT
90186 TTTTGAGATTAGGGACTATAAACACATTCTC
127 TTTTGAGATTAGGGACTATAAACACATTCTC
* * * * * ** * ** * * *
90217 CTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAA-TCGTTTCTTTTC-CC-TTTT
1 CTCATAAGGATACACGATATTGATGCTTTGGTTTCG-AAAGAAAGGC-TTTCTTGTCACCAATTT
* * * * * * * * *
90279 TTCCATAATA-TCAAAATTCAT-CCCATAATTATGGCAAGC-ATCGATTCTCAT-AGGAGGCTCC
64 TT--ATAA-AGTCAAAGTTCGTACTCA-AATGA-GACAAACGA-GGATTCTCATAATGA-TCTCC
*
90340 ATTCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-C
122 ATTCTTTTTGAGATTAGGGA-CTATA-AACACATTCTC
* * * * * * * * * **
90375 ATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTT
1 -CTCATAAGGATACACGATATTGATGCTTTGGTTTCGAAAG-AAAGGCTTTCTTGT-CACCAATT
* * * * * ** * *
90439 TTTATAGAAGT-AAAGTTTG-ACTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATT
63 TTTATA-AAGTCAAAGTTCGTACTC--AAATGAGACAAACGAGGATTCTCATAATGATCTCCATT
* * * ** *
90502 -TTTTTCATGATTAGGCACCATAAAC-TTTGTCTT
125 CTTTTTGA-GATTAGGGACTATAAACACAT-TCTC
*
90535 CTCATAAGGATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTTT
1 CTCATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTTT
* * * *
90600 GTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCT-AGTAATGATTTTCATTCTTT
66 ATAAAGTCAAAGTTCGT-ACTCAAATGAGACAAACGAGGATTCTCA-TAATGATCTCCATTCTTT
*
90664 TTGAGATTAGGGACTGTAAACACATTCTC
129 TTGAGATTAGGGACTATAAACACATTCTC
* * *** * ** * ** * * *
90693 CTCATTAGGATAAACGATATTCCCGATTTTCTTTTGCAGGGAAA-TCGTTTCTTTTC-CC-TTTT
1 CTCATAAGGATACACGATATTGATGCTTTGGTTTCG-AAAGAAAGGC-TTTCTTGTCACCAATTT
* * * * * * * * * * *
90755 TTCCTTAATA-TCAAAATTCAT-CCCATAATTATGGCAAGC-ATCGATTCTCGT-AGGAGGCTCC
64 TT--ATAA-AGTCAAAGTTCGTACTCA-AATGA-GACAAACGA-GGATTCTCATAATGA-TCTCC
*
90816 ATTCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-C
122 ATTCTTTTTGAGATTAGGGA-CTATA-AACACATTCTC
* * * * * * * * * **
90851 ATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTT-TCCACCGTTT
1 -CTCATAAGGATACACGATATTGATGCTTTGGTTTCGAAAG-AAAGGCTTTCTTGT-CACCAATT
* * * * * * ** * *
90915 TTTATAGAAGT-AAAGTTTG-ACTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATT
63 TTTATA-AAGTCAAAGTTCGTACTC--AAATGAGACAAACGAGGATTCTCATAATGATCTCCATT
* * * ** *
90978 C-TTTTCATGATTAGGCACCATAAAC-TTTGTCTT
125 CTTTTTGA-GATTAGGGACTATAAACACAT-TCTC
* * *
91011 CTCAT-AGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACAAATTTT
1 CTCATAAGG-ATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTT
* * * * * *
91075 TGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCT-AGTCATGATCTTCATTTTT
65 TATAAAGTCAAAGTTCGT-ACTCAAATGAGACAAACGAGGATTCTCA-TAATGATCTCCATTCTT
*
91139 TTTGTGATTAGGGACTATAAACACATTCTC
128 TTTGAGATTAGGGACTATAAACACATTCTC
* * *
91169 CTCATTAGGATAAATGATATT
1 CTCATAAGGATACACGATATT
91190 CACGATTTTC
Statistics
Matches: 680, Mismatches: 216, Indels: 155
0.65 0.21 0.15
Matches are distributed among these distances:
157 26 0.04
158 245 0.36
159 356 0.52
160 39 0.06
161 14 0.02
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (157 bp):
CTCATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTGTCACCAATTTTT
ATAAAGTCAAAGTTCGTACTCAAATGAGACAAACGAGGATTCTCATAATGATCTCCATTCTTTTT
GAGATTAGGGACTATAAACACATTCTC
Found at i:91661 original size:284 final size:284
Alignment explanation
Indices: 91151--91715 Score: 898
Period size: 284 Copynumber: 2.0 Consensus size: 284
91141 TGTGATTAGG
*
91151 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * * *
91216 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCA
* *
91281 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
91346 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGT
91411 CTCTTAAATAAGACAAACAAGCAT
261 CTCTTAAATAAGACAAACAAGCAT
* *
91435 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * * *
91500 TTTC-TTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
66 TTTCGTTT-CCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTC
* *
91564 ATAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGA
130 ATAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
** *
91629 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCATTATTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTG
*
91694 TCTCTTAAATAATACAAACAAG
260 TCTCTTAAATAAGACAAACAAG
91716 AATTGTCATG
Statistics
Matches: 256, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
283 3 0.01
284 253 0.99
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCA
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAACAAGCAT
Found at i:92140 original size:761 final size:760
Alignment explanation
Indices: 90675--92192 Score: 2446
Period size: 761 Copynumber: 2.0 Consensus size: 760
90665 TGAGATTAGG
* *
90675 GACTGTAAACACATTCTCCTCATTAGGATAAACGATATTCCCGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * * * *
90740 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCA
* * * *
90805 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
90870 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCATTTTTTATAGAAGTAAAGTTTGA
90935 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
91000 AACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCAAAGGAATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGT
* * * *
91065 CACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGATC
391 CACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* * *
91130 TTCATTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGA
456 TTCATTCTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGA
*
91195 TTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAAT
521 TTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAAT
* *
91260 TATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATT
586 GATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATT
* * *
91325 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTT
651 CCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
* *
91390 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
716 TTTGATAAAAGTAAAGTTTGACTCTTAAATAAGACAAACAAGCAT
* * *
91435 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * *
91500 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCA
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCA
* * * *
91565 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACGTTCCCTTCATAAGGATAGATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
** *
91630 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCATTATTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCATTTTTTATAGAAGTAAAGTTTGA
* *
91695 CTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
91760 AACTTTGTCTTCTCAAAAGG-ATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTT
326 AACTTTGTCTTCTC-AAAGGAATACACGA-TATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTT
* * **
91824 GTCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGA
389 GTCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGA
*
91889 TTTTCATTCTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
454 TCTTCATTCTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
* * *
91954 GATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATA
519 GATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATA
* *
92019 ATGATGGCAAGCATCGATTCTCGTAGGAGGCTCCAT-TCTTTTTGAGATTGGGAGCTAAGAACAC
584 ATGATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAACAC
*
92083 ATTCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC
648 ATTCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC
*
92148 GTTTTTTATAAAAGTAAAGTTTGACTCTTAAATAAGACAAACAAG
713 GTTTTTGATAAAAGTAAAGTTTGACTCTTAAATAAGACAAACAAG
92193 AAATGTCATG
Statistics
Matches: 694, Mismatches: 61, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
760 317 0.46
761 377 0.54
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (760 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCA
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCATTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAGGAATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGT
CACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGA
TTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAAT
GATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATT
CCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
TTTGATAAAAGTAAAGTTTGACTCTTAAATAAGACAAACAAGCAT
Found at i:93377 original size:284 final size:284
Alignment explanation
Indices: 92867--93431 Score: 997
Period size: 284 Copynumber: 2.0 Consensus size: 284
92857 TGTGATTAGG
*
92867 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* *
92932 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATACTCG
*
92997 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
93062 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTGT
93127 CTCTTAAATAAGACAAACAAGCAT
261 CTCTTAAATAAGACAAACAAGCAT
*
93151 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* *
93216 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCTCATAATTATGGCAAGCATCGATACTCG
66 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATACTCG
* * *
93281 TAA-AGGGCTCCATTCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGGTACTTGA
131 TAAGA-GGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
*
93345 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTG
93410 TCTCTTAAATAAGACAAACAAG
260 TCTCTTAAATAAGACAAACAAG
93432 AATGGTCATG
Statistics
Matches: 267, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
283 1 0.00
284 266 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATACTCG
TAAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAACAAGCAT
Found at i:93887 original size:760 final size:763
Alignment explanation
Indices: 92389--93907 Score: 2591
Period size: 760 Copynumber: 2.0 Consensus size: 763
92379 GTAATTAGGC
* *
92389 ACTATAAACACATTCTCCTCGTTAGGATAAACGATATCCATGATTTTCTCTTGCATAGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATCCACGATTTTCTCTTGCATAGAAATCTT
* *
92454 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATACTCGT
*
92519 AAGTGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATTAAA
131 AAGTGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCATTCATAAGGATACATTAAA
* *
92584 AATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
196 AATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTG
*
92649 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
261 TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
92714 AAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTG
326 AAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTG
** *
92779 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGAT
391 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTAAAATGAGACAAACAAGGATTCTAGTCATGAT
*
92844 CTTCATTTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTCAC
456 CTTCATTTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
92909 GATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATA
521 GATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATA
* *
92974 ATTATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
586 AATATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
* *
93039 TTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCG
651 TTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
93104 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
716 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
* * *
93152 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATCCACGATTTTCTCTTGCATAGAAATCTT
* ** * *
93217 TTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCTCATAATTATGGCAAGCATCGATACTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATACTCGT
* * * *
93282 AAAG-GGCTCCATTCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGGTAC-TT-G
131 -AAGTGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCATTCATAAGGATACATTAA
* *
93344 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTT
195 AAATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTT
*
93409 GTCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCA
260 GTCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCA
* *
93474 TAAACTTTGTCTTCTTATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTT
325 TAAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTT
* * *
93539 GTCATAAATTTTTGTAAAGTCTAAGTTCGTGTCTAAAATGAGACAAACAAGGATTCTAGTCATGA
390 GTCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTAAAATGAGACAAACAAGGATTCTAGTCATGA
93604 TCTTCA-TTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCA
455 TCTTCATTTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCA
* *
93668 CGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCTTAATATCAAAATT-ATTCCCA
520 CGATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCA-TCCCA
93732 TAAATATGGCAAGCATCGATTCTCAG-AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAC
584 TAAATATGGCAAGCATCGATTCTC-GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAC
*
93796 ACATTCCCTTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
648 ACATTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
* * *
93861 CCGTTTTTTATAGAAGTAATGTTTGTCTCTTAAATAATACAAACAAG
713 CCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
93908 AATTGTCATG
Statistics
Matches: 711, Mismatches: 42, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
759 1 0.00
760 283 0.40
761 253 0.36
762 2 0.00
763 169 0.24
764 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (763 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATCCACGATTTTCTCTTGCATAGAAATCTT
TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATACTCGT
AAGTGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCATTCATAAGGATACATTAAA
AATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTG
TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
AAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTG
TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTAAAATGAGACAAACAAGGATTCTAGTCATGAT
CTTCATTTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
GATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATA
AATATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
TTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
Found at i:94060 original size:476 final size:475
Alignment explanation
Indices: 93151--94383 Score: 2019
Period size: 476 Copynumber: 2.6 Consensus size: 475
93141 AAACAAGCAT
93151 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* *
93216 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCTCATAATTATGGCAAGCATCGATACTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATT-ATCCCATAATTATGGCAAGCATCGATTCTCG
* * * *
93281 TAA-AGGGCTCCATTCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGGTACTTGA
130 CAAGA-GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA
*
93345 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* *
93410 TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCAT
259 TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCAT
* * *
93475 AAACTTTGTCTTCTTATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
324 AAACTTTGTCTTCTAAAAGGAATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
* *
93540 TCATAAATTTTTGTAAAGTCTAAGTTCGTGTCTAAAATGAGACAAACAAGGATTCTAGTCATGAT
389 TCATAAATTTTTGTAAAGTCTAAGTTCGTGTCTAAAATGAGACAAACAAGCATTCTAGTAATGAT
*
93605 CTTCATTTTTTTTGTGATTAGG
454 CTTCATTCTTTTTGTGATTAGG
93627 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
*
93692 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTATTCCCATAAATATGGCAAGCATCGATTCTCA
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTA-TCCCATAATTATGGCAAGCATCGATTCTC-
*
93757 G-AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCAAAAGGGTACATGA
129 GCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA
*
93821 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAATGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* *
93886 TCTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCAT
259 TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCAT
93951 AAACTTTGTCTTCTCAAAAGG-ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCT
324 AAACTTTGTCTTCT-AAAAGGAATACACGA-TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCT
* *
94015 TGTC-TCCAATTTTTGTAAAGTCTAAGTTCGTG-CTCAAAA-GAGACAAACGAGCATTCTAGTAA
387 TGTCAT-AAATTTTTGTAAAGTCTAAGTTCGTGTCT-AAAATGAGACAAACAAGCATTCTAGTAA
94077 TGATCTTCATTCTTTTTGTGATTAGG
450 TGATCTTCATTCTTTTTGTGATTAGG
* ** *
94103 CACGGTAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* ** * * * *
94168 TTTCTTTGCCCCATTTTCCTTAATATCAAAAGTCATCCCGTAATTATGACAAGCTTCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAA-TTATCCCATAATTATGGCAAGCATCGATTCTCG
* *
94233 CAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGAC
130 CAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
*
94298 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
94363 CTCTTAAATAAGACAAACAAG
260 CTCTTAAATAAGACAAACAAG
94384 CATGACTATA
Statistics
Matches: 709, Mismatches: 39, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
475 2 0.00
476 633 0.89
477 74 0.10
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTATCCCATAATTATGGCAAGCATCGATTCTCGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCATAA
ACTTTGTCTTCTAAAAGGAATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
ATAAATTTTTGTAAAGTCTAAGTTCGTGTCTAAAATGAGACAAACAAGCATTCTAGTAATGATCT
TCATTCTTTTTGTGATTAGG
Found at i:94393 original size:760 final size:760
Alignment explanation
Indices: 93627--97420 Score: 6634
Period size: 760 Copynumber: 5.0 Consensus size: 760
93617 TGTGATTAGG
*
93627 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * * * * * * *
93692 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATT-ATTCCCATAAATATGGCAAGCATCGATTCTC
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCA-TCCCGTAACTATGACAAGCTTCGATTCTC
* * *
93756 AG-AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCAAAAGGGTACATG
130 -GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATG
* *
93820 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAATGTTT
194 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTT
* *
93885 GTCTCTTAAATAAT-ACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACC
259 GTCTCATAAAT-ATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACC
* *
93949 ATAAACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTC
323 ATAAACTTTGTCTTCTCATAAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTC
* * *
94014 TTGTCTCCAATTTTTGTAAAGTCTAAGTTCGTG-CTCAAAAGAGACAAACGAGCATTCTAGTAAT
387 TTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAAT
*
94078 GATCTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAAAGATATTC
452 GATCTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTC
* * *
94143 ACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAAGTCATCCCG
517 ACAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCA
* *
94208 TAATTATGACAAGCTTCGATTCTCGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCA
582 TAATTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCA
94273 CATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCAC
647 CATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCAC
94338 CGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
712 CGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
94387 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
94452 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* * *
94517 TAAGAGGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
*
94582 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
*
94647 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
94712 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
**
94777 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
**
94842 -T--TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
94904 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
94969 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
95034 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
* *
95099 TCTGATAGAAGTAAAGTTTGTCACTTAAATAAGACAAACAAGCAT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
95144 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
**
95209 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
95274 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* *
95339 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
*
95404 CTCATAAATATGACAAACAAGAATTGTCAAGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
95469 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
* *
95534 CACCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
95599 TTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
*
95664 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
95729 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
95794 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
*
95859 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAATACAAACAAGCAT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
*
95904 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTCCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
*
95969 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* *
96034 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
*
96099 ATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* *
96164 CTCATAAATATGAGAAACAAGAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACCATA
261 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
96229 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAATGCTTTCTTTT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
96294 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
** *
96359 TAGATTCTTTTTGTGATTAGGCATGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 TTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
96424 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
521 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
96489 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
586 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
96554 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
651 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
* *
96619 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGGCAAACAAGCTT
716 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
* *
96664 GACTATAAACACATTCTCCTAATTAGGATAAACGATATTAATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
*
96729 TTTCTTTACGCTATTTTCCTTATTATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
*
96794 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
* *
96859 ATTGATGCTTTTGG-GTCGCAAAAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTG
196 ATTGATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
96923 TCTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
* *
96988 AAACTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTG
325 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
*
97053 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
* ** * **
97118 CTTCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATG
455 CTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACA
* * * * *
97183 ATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAA
520 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* * * * * *
97248 CTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGT
585 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
* * *
97313 TCCCTTCATAAGGATACATGACATTGATGCTTTTGG-GTCGTAAGAAAATGTTTTCTTTCCGCTG
650 TCCCTTCATAAGGATACATGACATTGATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
* * *
97377 TTTTTTATAGAAGTAAAGTTTGTCTCATAAATACGACAAACAAG
714 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
97421 AATTGTCATG
Statistics
Matches: 2901, Mismatches: 124, Indels: 18
0.95 0.04 0.01
Matches are distributed among these distances:
757 732 0.25
758 1 0.00
759 67 0.02
760 2090 0.72
761 11 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (760 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:94618 original size:284 final size:284
Alignment explanation
Indices: 94108--94667 Score: 958
Period size: 284 Copynumber: 2.0 Consensus size: 284
94098 TTAGGCACGG
94108 TAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* *
94173 TTGCCCCATTTTCCTTAATATCAAAAGTCATCCCGTAATTATGACAAGCTTCGATTCTCGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
94238 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
*
94303 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
94368 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
* *
94392 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * *
94457 TTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
* * * *
94522 GGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
* * *
94587 TGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTCTCAT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
*
94652 AAATACGACAAACAAG
261 AAATAAGACAAACAAG
94668 AATTGTCATG
Statistics
Matches: 258, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
284 258 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAAGACAAACAAGCATGACTA
Found at i:95372 original size:284 final size:284
Alignment explanation
Indices: 94861--95424 Score: 921
Period size: 284 Copynumber: 2.0 Consensus size: 284
94851 GTGATTAGGC
94861 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * *
94926 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
94991 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
95056 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
95121 ACTTAAATAAGACAAACAAGCATG
261 ACATAAATAAGACAAACAAGCATG
**
95145 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * *** * *
95210 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
95275 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* * *
95340 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
* *
95405 TCATAAATATGACAAACAAG
261 ACATAAATAAGACAAACAAG
95425 AATTGTCAAG
Statistics
Matches: 257, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 257 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
ACATAAATAAGACAAACAAGCATG
Found at i:96184 original size:284 final size:284
Alignment explanation
Indices: 95625--96173 Score: 909
Period size: 284 Copynumber: 1.9 Consensus size: 284
95615 TTAGGCACGG
* *
95625 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTTTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTTTTCT
* * *
95690 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
95755 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
*
95820 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
95885 AAATAATACAAACAAGCATGACTA
261 AAATAATACAAACAAGCATGACTA
**
95909 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTCCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTTTTCT
* * * ** * *
95974 TTACGCTATTTTCCTTATTATCAAAATTCATCCTGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
* * *
96039 GGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
* * *
96104 TGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTCTCAT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
96169 AAATA
261 AAATA
96174 TGAGAAACAA
Statistics
Matches: 244, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 244 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAATACAAACAAGCATGACTA
Found at i:96895 original size:284 final size:284
Alignment explanation
Indices: 96385--96944 Score: 888
Period size: 284 Copynumber: 2.0 Consensus size: 284
96375 TTAGGCATGG
* *
96385 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTAATTAGGATAAACGATATTAACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
96450 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
*
96515 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
96580 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAAAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
*
96645 AAATAAGGCAAACAAGCTTGACTA
261 AAATAAGACAAACAAGCTTGACTA
**
96669 TAAACACATTCTCCTAATTAGGATAAACGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTAATTAGGATAAACGATATTAACAATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * * *
96734 TTACGCTATTTTCCTTATTATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
* *
96799 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * *
96864 TGCTTTTGG-GTCGCAAAAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGTCTCA
196 TGC-TTTGGTGTCGCAAAAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCA
*
96928 TAAATATGACAAACAAG
260 TAAATAAGACAAACAAG
96945 AATTGTCATG
Statistics
Matches: 251, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
284 246 0.98
285 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (284 bp):
TAAACACATTCTCCTAATTAGGATAAACGATATTAACAATTTTCTTTTGCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAAAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAAGACAAACAAGCTTGACTA
Found at i:97138 original size:158 final size:158
Alignment explanation
Indices: 96962--97654 Score: 363
Period size: 159 Copynumber: 4.4 Consensus size: 158
96952 ATGCTAATCC
* * ** *
96962 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTCCTCATAAGGATACACGATATTGATTCT
1 CCATTCTTTTCGTAATTAGGCACCATAAACCATGTCTCCTCATAAGGATACACGATATTGATGCT
*
97027 TTTGTTTCGTAAGAAAGGCTTTCTTGTCAC-CAATTTTTGTA-AAGTCTAAGTTCGTGCCTCAAA
66 TTTGTTTCGTAAGAAAGGCTTTCTT-TCACGCAATTTTTGTAGAAGTCAAAGTTCGTGCCTCAAA
97090 TGA-GACAAACGAGGATTCTAGTCATGATCT
130 T-ACGACAAAC-AGGATTCTAGTCATGATCT
* * * * * * * *
97120 TCATTCTTTTTGTAATTAGGCACTATAAACACAT-TCTCCTCCTTAGGATAAACGATATTCATGA
1 CCATTCTTTTCGTAATTAGGCACCATAAAC-CATGTCTCCTCATAAGGATACACGATATTGATGC
* * * * * * ** * * *
97184 TTTTCTTTTGCATGGAAA-TCTTTTCTTT-ACGCTATTTTCCT-TATTA-TCAAAATTCATCCCG
65 TTTTGTTTCGTA-AGAAAGGC-TTTCTTTCACGCAATTTT--TGTAGAAGTCAAAGTTCGTGCC-
* * * ** * * *
97245 T-AACTATGACAAGCTTCGATTCTCGT-AAGAGGCT
125 TCAAATACGACAAAC-AGGATTCTAGTCATGA-TCT
* * * * * * *
97279 CCATGCTTTTCG-AGATT-GGGAGC-TAAGAACACGT-TCCCTTCATAAGGATACATGACATTGA
1 CCATTCTTTTCGTA-ATTAGGCACCATAA-ACCATGTCT-CC-TCATAAGGATACACGATATTGA
** * * ** * *
97340 TGCTTTTGGGTCGTAAGAAAATGTTTTCTTTC-CGCTGTTTTTTATAGAAGT-AAAGTT--TGTC
62 TGCTTTTGTTTCGTAAG-AAAGGCTTTCTTTCACGC-AATTTTTGTAGAAGTCAAAGTTCGTGCC
* * *
97401 TCATAAATACGACAAACAAGAAT-T-GTCATGCTAATCC
125 TC--AAATACGACAAACAGGATTCTAGTCATG---ATCT
* * ** * *
97438 CCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATATTGATTCT
1 CCATTCTTTTCGTAATTAGGCACCATAAACCATGTCTCCTCATAAGGATACACGATATTGATGCT
* *
97503 TTGGTTTCGTAAGAAAGGCTTTCTTGTCAC-CAATTTTTGTA-AAGTCTAAGTTCGTGCCTCAAA
66 TTTGTTTCGTAAGAAAGGCTTTCTT-TCACGCAATTTTTGTAGAAGTCAAAGTTCGTGCCTCAAA
* * *
97566 TGAGGGA-AACCAGGATTCTAGTAATGATCT
130 T-A-CGACAAACAGGATTCTAGTCATGATCT
* * * * * * *
97596 TCTTTCTTTTTGTGATTAGGCACTATAAACACAT-TCTCCTCATTAGGATAAACGATATT
1 CCATTCTTTTCGTAATTAGGCACCATAAAC-CATGTCTCCTCATAAGGATACACGATATT
97655 CACAATTTTC
Statistics
Matches: 383, Mismatches: 110, Indels: 84
0.66 0.19 0.15
Matches are distributed among these distances:
156 3 0.01
157 17 0.04
158 159 0.42
159 169 0.44
160 26 0.07
161 9 0.02
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (158 bp):
CCATTCTTTTCGTAATTAGGCACCATAAACCATGTCTCCTCATAAGGATACACGATATTGATGCT
TTTGTTTCGTAAGAAAGGCTTTCTTTCACGCAATTTTTGTAGAAGTCAAAGTTCGTGCCTCAAAT
ACGACAAACAGGATTCTAGTCATGATCT
Found at i:97557 original size:476 final size:476
Alignment explanation
Indices: 96665--99889 Score: 2429
Period size: 476 Copynumber: 6.6 Consensus size: 476
96655 AACAAGCTTG
* *
96665 ACTATAAACACATTCTCCTAATTAGGATAAACGATATTAATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
*
96730 TTCTTTACGCTATTTTCCTTATTATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
*
96795 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
* * *
96860 TTGATGCTTTTGGGTCGCAAAAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTTGGGTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
*
96925 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* *
96990 ACTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
*
97055 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
391 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
97120 TCATTCTTTTTGTAATTAGGC
456 TCATTCTTTTTGTAATTAGGC
*
97141 ACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
97206 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
97271 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
*
97336 TTGATGCTTTTGGGTCGTAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTTGGGTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
97401 TCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
97466 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
** *
97531 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACCAGGATTCTAGTAATGATCT
391 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
* *
97596 TCTTTCTTTTTGTGATTAGGC
456 TCATTCTTTTTGTAATTAGGC
**
97617 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
* * * * * * * * * *
97682 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCTCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
* * *
97747 AAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
* *
97812 TTGATGC-TTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 TTGATGCTTTTGG-GTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* * * * * * * * ** * ** *** *
97876 CTCTTAAATAAGGCAAACAAG-CTTGAC-T-ATAA-ACACATTCTCCTCATTAGGATAAACGATA
260 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
** * * *** * * * * ** **
97937 TTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTACGCTATT--TTCCTT-ATTATCAAAATTC
325 AAC-T--TTGTCTTCT-CAT---AA-GGATAC---ACGATATTGATTCTTTGGTT-TCGTAA-GA
*** ** * * * * * * * ** * ** *
97999 ATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTA
377 AAGGC-TTTCT-TGTC-A-C--CAATTTTTGTAA-A-G-TCTAAG---TTCGTGCCT--CAAATG
* **** * * * ** *
98064 AGA-ACACGTTCCCTTCATAAGGATACATGA-CATTGATGCTTTGGTGTCGCAAGAAAAGGT
428 AGACAAACG-AGGATTC-T-A-G-TA-ATGATC-TTCATTCTTT--T-T-G-TA-ATTAGGC
** * *** * * * * * * * * ****** * *
98124 TTTCTTTCCACTATT-T-TTTA-TAGAAGTAAA-GTTTGTCTCATAAATATGACAAACA-AGAAT
1 ACTATAAACAC-ATTCTCCTCATTAGGA-TAAACG-ATAT-TCATGATTTTCTTTTGCATGGAAA
* * * * * * * * * * * * * **
98184 TGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGAT-A
62 TCT-TTTCT-TTACGC--TATTTTCCTTATT----ATCA-AAA---T-TCATCCCGTAACTATGA
* * * * * *** * ** **
98248 CACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG-TCACCAATTTTTGTAAAGTCTAA
114 CAAGCT-TCGATTC-------TCGTAAG--AGGC-TCCATGCTTTTCGA-GATTG-GGAG-CTAA
** * * * * *** ** ** *
98312 G--TTCG-TGCC-TCGAATGAGGGAAACCAGGATTCTAGTAATGAT-CTTCTTTATTTTTGTGAT
165 GAACACGTTCCCTTC--AT-AAGGATA-CATGA--C-A-T--TGATGCTT-TTGGGTCGTAAGAA
* * *** * *** ** * * * * ** * *****
98372 TAGGCACTATAAACACAT-TCTCCTCATTAGGA-TAAACGATAT-TCACA-ATTTTC-TTTTGCA
219 AATGTTTTCTTTCCAC-TGT-TTTTTA-TAGAAGTAAA-G-TTTGTCTCATAAATACGACAAACA
* * * * * * ** *
98432 TGGAAATCT-TTTCT-TTGCCCCATTTTCCTTAATATCAAAATTCA-TC-CCAT-AA-TTATGTC
279 -AGAATTGTCATGCTAAT-CCCCA--TT-CTT--T-TCATGATT-AGGCACCATAAACTT-TGTC
** * * * * * * * * ** * *
98491 AAGCTTCGATTCACGCA-AGAGGCTCCA-TGCTT-TTCGAGATT-GGGAGCTAAGAGCACATTCC
334 -TTC-TC-A-T-AAGGATACACGAT--ATTGATTCTTTG-GTTTCGTAAG--AA-AG-GC-TTTC
* ** *** * * * * ** *** *** * * *
98552 CT-TCATAAGGATACATG-ACATTC-ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
386 TTGTCACCA--ATTTTTGTAAAGTCTAAG--TTCGTG-C-C--TCAAATG-AGACAAACGA-GGA
* ** ** ** * ** *
98614 TTCT-GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGC
441 TTCTAG-T--AA-TGATCTTCAT-TCTT---TTTG-TAATTAGGC
*
98658 ATGACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAAT
1 ---ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAAT
**
98723 CTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCT
63 CTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCT
98788 CGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATG
128 CGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATG
* * *
98853 ACATTGATGC-TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTT
193 ACATTGATGCTTTTGG-GTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTT
*
98917 TGTCTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACC
257 TGTCTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACC
* * *
98982 ATAAACTTTATCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCT
322 ATAAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCT
*
99047 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATG
387 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATG
99112 ATCTTCATTCTTTTTGTAATTAGGC
452 ATCTTCATTCTTTTTGTAATTAGGC
*
99137 ACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
99202 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
99267 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
*
99332 TTGATGCTTTTGGGTCGTAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTTGGGTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
99397 TCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
99462 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
**
99527 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC-
391 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
*
99591 T--TTCTTTTTGTGATTAGGC
456 TCATTCTTTTTGTAATTAGGC
** *
99610 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATAGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
* * * * * * * * * *
99675 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGACTCACGC
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
* *
99740 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
* * * * *
99805 TTCATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGT
196 TTGATGCTTTTGG-GTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* *
99869 CTCTTAAATAAGACAAACAAG
260 CTCATAAATACGACAAACAAG
99890 CATGACTATA
Statistics
Matches: 2109, Mismatches: 469, Indels: 345
0.72 0.16 0.12
Matches are distributed among these distances:
472 24 0.01
473 271 0.13
474 1 0.00
475 17 0.01
476 1149 0.54
477 5 0.00
479 7 0.00
480 6 0.00
481 9 0.00
482 2 0.00
483 14 0.01
484 8 0.00
485 2 0.00
486 1 0.00
487 6 0.00
488 13 0.01
489 6 0.00
490 1 0.00
491 5 0.00
492 1 0.00
493 9 0.00
494 14 0.01
495 10 0.00
496 9 0.00
497 4 0.00
498 11 0.01
499 11 0.01
500 5 0.00
501 20 0.01
502 6 0.00
503 6 0.00
504 8 0.00
505 17 0.01
506 30 0.01
507 49 0.02
508 9 0.00
509 1 0.00
510 9 0.00
511 1 0.00
513 9 0.00
514 10 0.00
515 14 0.01
516 10 0.00
517 2 0.00
518 12 0.01
519 18 0.01
525 16 0.01
526 11 0.01
527 2 0.00
528 10 0.00
529 12 0.01
530 10 0.00
531 9 0.00
533 9 0.00
534 19 0.01
535 13 0.01
536 11 0.01
537 43 0.02
538 29 0.01
539 21 0.01
540 7 0.00
541 9 0.00
542 5 0.00
543 8 0.00
544 4 0.00
545 1 0.00
546 3 0.00
547 4 0.00
548 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
TTGATGCTTTTGGGTCGTAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
TCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
TCATTCTTTTTGTAATTAGGC
Found at i:98053 original size:760 final size:760
Alignment explanation
Indices: 97141--99416 Score: 4106
Period size: 760 Copynumber: 3.0 Consensus size: 760
97131 GTAATTAGGC
*
97141 ACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
97206 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
97271 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
* * * *
97336 TTGATGCTTTTGG-GTCGTAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGT
196 TTGATGC-TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGT
*
97400 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
260 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
97465 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
325 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
97530 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACCAGGATTCTAGTAATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACCAGGATTCTAGTAATGATC
97595 TTCTTTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
455 TTCTTTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
*
97660 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCTCATAAT
520 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
*
97725 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAGCACATT
585 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
97790 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTT
650 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTT
* *
97855 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGGCAAACAAGCTTG
715 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
97901 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
97966 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
98031 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
98096 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
98161 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
98226 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
*
98291 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCGAATGAGGGAAACCAGGATTCTAGTAATGATCT
391 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACCAGGATTCTAGTAATGATCT
*
98356 TCTTTATTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAAT
456 TCTTTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAAT
98421 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATT
521 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATT
98486 ATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTC
586 ATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTC
* *
98551 CCTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
651 CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTT
*
98616 CTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
716 TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
*
98661 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
**
98726 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
98791 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
98856 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
98921 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* * *
98986 ACTTTATCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
** * *
99051 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
391 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACCAGGATTCTAGTAATGATCT
* * * **
99116 TCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGAT
456 TCTTTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAAT
* * * * * *
99181 TTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACT
521 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATT
* * * * *
99246 ATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTC
586 ATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTC
* *
99311 CCTTCATAAGGATACATGACATTGATGCTTTTGG-GTCGTAAGAAAATGTTTTCTTTCCGCTGTT
651 CCTTCATAAGGATACATGACATTGATGC-TTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTT
* * *
99375 TTTTATAGAAGTAAAGTTTGTCTCATAAATACGACAAACAAG
715 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
99417 AATTGTCATG
Statistics
Matches: 1463, Mismatches: 51, Indels: 4
0.96 0.03 0.00
Matches are distributed among these distances:
759 5 0.00
760 1453 0.99
761 5 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (760 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACCAGGATTCTAGTAATGATCT
TCTTTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAAT
TTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATT
ATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTC
CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTT
TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
Found at i:98128 original size:284 final size:284
Alignment explanation
Indices: 97617--98180 Score: 921
Period size: 284 Copynumber: 2.0 Consensus size: 284
97607 GTGATTAGGC
97617 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * *
97682 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCTCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
97747 AAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* * *
97812 TTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGTC
* *
97877 TCTTAAATAAGGCAAACAAGCTTG
261 TCATAAATAAGACAAACAAGCTTG
**
97901 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * * * *
97966 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
* *
98031 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
98096 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGTC
*
98161 TCATAAATATGACAAACAAG
261 TCATAAATAAGACAAACAAG
98181 AATTGTCATG
Statistics
Matches: 257, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 257 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCTTG
Found at i:98888 original size:284 final size:284
Alignment explanation
Indices: 98377--98940 Score: 912
Period size: 284 Copynumber: 2.0 Consensus size: 284
98367 GTGATTAGGC
98377 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * *
98442 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
98507 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
98572 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
98637 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
* **
98661 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * *** * *
98726 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
98791 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* * * *
98856 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
98921 TCATAAATATGACAAACAAG
261 TCATAAATAAGACAAACAAG
98941 AATTGTCATG
Statistics
Matches: 256, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
284 256 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:99125 original size:158 final size:158
Alignment explanation
Indices: 98838--99647 Score: 365
Period size: 159 Copynumber: 5.1 Consensus size: 158
98828 CACGTTCCCT
* * * * * * * *
98838 TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCAC-TATTTTT
1 TCATAAGGATACACGATATTGATGCTTTTGTTTCGTAAG-AAAGGCTTTCTTT-CACGCAATTTT
* * * * * *
98902 TATAGAAGT-AAAGTT--TGTCTCATAAATATGACAAAC-AAGAAT-T-GTCATGCTAATCCCCA
64 TGTAGAAGTCAAAGTTCGTGCCTC--AAATACGACAAACGAGGATTCTAGTCATG---ATCTCCA
*
98961 TTCTTTTCATGATTAGGCACCATAAACTTTATCTCC
124 TTCTTTTCATGATTAGGCACCATAAAC-ATATCTCC
*
98997 TCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTCAC-CAATTTTT
1 TCATAAGGATACACGATATTGATGCTTTTGTTTCGTAAGAAAGGCTTTCTT-TCACGCAATTTTT
* *
99061 GTA-AAGTCTAAGTTCGTGCCTCAAATGA-GACAAACGAGGATTCTAGTCATGATCTTCATTCTT
65 GTAGAAGTCAAAGTTCGTGCCTCAAAT-ACGACAAACGAGGATTCTAGTCATGATCTCCATTCTT
** * * *
99124 TTTGTAATTAGGCACTATAAACACATTCTCC
129 TTCATGATTAGGCACCATAAACATA-TCTCC
* * * * * * * * * * *
99155 TCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAA-TCTTTTCTTT-ACGCTATTTT
1 TCATAAGGATACACGATATTGATGCTTTTGTTTCGTA-AGAAAGGC-TTTCTTTCACGCAATTTT
** * * * * * * *** * * *
99218 CCT-TATTA-TCAAAATTCATCCCGT-AACTATGACAAGCTTCGATTCTCGT-AAGAGGCTCCAT
64 --TGTAGAAGTCAAAGTTCGTGCC-TCAAATACGACAAACGAGGATTCTAGTCATGA-TCTCCAT
* * *
99279 GCTTTTCGA-GATT-GGGAGC-TAAGAACACGT-TC-CC
125 TCTTTTC-ATGATTAGGCACCAT-A-AACA--TATCTCC
* * ** * * **
99313 TTCATAAGGATACATGACATTGATGCTTTTGGGTCGTAAGAAAATGTTTTCTTTC-CGCTGTTTT
1 -TCATAAGGATACACGATATTGATGCTTTTGTTTCGTAAG-AAAGGCTTTCTTTCACGC-AATTT
* * * * *
99377 TTATAGAAGT-AAAGTT--TGTCTCATAAATACGACAAAC-AAGAAT-T-GTCATGCTAATCCCC
63 TTGTAGAAGTCAAAGTTCGTGCCTC--AAATACGACAAACGAGGATTCTAGTCATG---ATCTCC
* * *
99436 ATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTC
123 ATTCTTTTCATGATTAGGCACCATAAAC-ATATCTCC
* *
99473 TCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCAC-CAATTTTT
1 TCATAAGGATACACGATATTGATGCTTTTGTTTCGTAAGAAAGGCTTTCTT-TCACGCAATTTTT
* ** *
99537 GTA-AAGTCTAAGTTCGTGCCTCAAATGA-GGGAAACGAGGATTCTAGTAATGATCT---TTCTT
65 GTAGAAGTCAAAGTTCGTGCCTCAAAT-ACGACAAACGAGGATTCTAGTCATGATCTCCATTCTT
** * *
99597 TTTGTGATTAGGCACTATAAACACATTCTCC
129 TTCATGATTAGGCACCATAAACATA-TCTCC
* *
99628 TCATTAGGATAAACGATATT
1 TCATAAGGATACACGATATT
99648 CACAATTTTC
Statistics
Matches: 478, Mismatches: 120, Indels: 110
0.68 0.17 0.16
Matches are distributed among these distances:
155 46 0.10
156 3 0.01
157 17 0.04
158 158 0.33
159 214 0.45
160 28 0.06
161 12 0.03
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (158 bp):
TCATAAGGATACACGATATTGATGCTTTTGTTTCGTAAGAAAGGCTTTCTTTCACGCAATTTTTG
TAGAAGTCAAAGTTCGTGCCTCAAATACGACAAACGAGGATTCTAGTCATGATCTCCATTCTTTT
CATGATTAGGCACCATAAACATATCTCC
Found at i:100046 original size:757 final size:759
Alignment explanation
Indices: 99137--100649 Score: 2694
Period size: 757 Copynumber: 2.0 Consensus size: 759
99127 GTAATTAGGC
99137 ACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
99202 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
99267 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
* * * *
99332 TTGATGCTTTTGG-GTCGTAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGT
196 TTGATGC-TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGT
99396 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
260 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
99461 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
325 AACTTTGTCTCCACATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
**
99526 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
99591 -T-TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAAT
455 TTATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAAT
99654 TTTCTTTTGCAT-AGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
520 TTTCTTTTGCATGA-AAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
* *
99718 TATGTCAAGCTTCGACTCA-CGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
584 TATGACAAGCTTCGA-TCATCGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACAT
*
99782 TCCCTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
648 TCCATTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
99847 TTCTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
713 TTCTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
*
99894 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
**
99959 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
100024 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
100089 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
*
100154 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
*
100219 ACTTTGTCTCCACATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTCCACATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
*
100284 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
391 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
* **
100349 TCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGAT
456 T-ATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAAT
*
100414 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATT
520 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATT
* * * *
100479 ATGACAGGCTTCGATTATCGTAGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTC
585 ATGACAAGCTTCGATCATCGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTC
* *
100544 CATTCATGAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
650 CATTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
*
100609 TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
715 CTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
100650 AATGGTCATG
Statistics
Matches: 721, Mismatches: 29, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
756 5 0.01
757 434 0.60
758 1 0.00
759 2 0.00
760 278 0.39
761 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (759 bp):
ACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
TCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTCCACATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
TATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATT
TTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
TGACAAGCTTCGATCATCGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
ATTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTC
TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
Found at i:100121 original size:284 final size:284
Alignment explanation
Indices: 99610--100173 Score: 894
Period size: 284 Copynumber: 2.0 Consensus size: 284
99600 GTGATTAGGC
99610 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATAGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATAGAAATCTT
* * *
99675 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGACTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGACTCACGC
*
99740 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* *
99805 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
99870 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
* ** *
99894 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATAGAAATCTT
* * * *** * * *
99959 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGACTCACGC
*
100024 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* * * *
100089 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
*
100154 TCATAAATATGACAAACAAG
261 TCATAAATAAGACAAACAAG
100174 AATTGTCATG
Statistics
Matches: 254, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
284 254 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATAGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGACTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:101079 original size:475 final size:475
Alignment explanation
Indices: 99894--103591 Score: 2903
Period size: 476 Copynumber: 7.6 Consensus size: 475
99884 AACAAGCATG
* * *
99894 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* * * * *** *
99959 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
*
100024 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
* **
100089 TTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
* *
100154 TCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* * *
100219 ACTTTGTCTCCACATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCAT-AGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
100284 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
390 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
*
100349 TCATTCTTTTTGTAATTAGGC
455 TCATTCTTTTTGTGATTAGGC
* *
100370 ACTATAAACACATTCTCCTCCTTAGGATAAACGATATTCATGATTTTCTTTTGCATGAAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* * *
100435 TTCTTTGCCCCATTTTCCTTATTATCAAAATTCATCCCATAATTATGACAGGCTTCGATTATCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * *
100500 AGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATGAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
*
100565 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
* * *
100630 TCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTTTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
100695 ACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
** * *
100760 ATAAATTTTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGATCT
390 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
*
100825 TCATT-TTTTTGTGATTAGGG
455 TCATTCTTTTTGTGATTAGGC
*
100845 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* ** * *
100910 TTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * *
100975 AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACAAGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
*
101040 TTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG-C
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
*
101104 TCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* * * *
101169 ACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATGT
326 ACTTTGTCTTCTC-ATAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
*
101234 CACCAA-TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
389 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATC
101298 TTCATTCTTTTTGTGATTAGGC
454 TTCATTCTTTTTGTGATTAGGC
* *
101320 A-TGGTAAACACATTGTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCT
1 ACT-ATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCT
* * *
101384 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACG
65 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * *
101449 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACACGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
101514 ATTGATGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
* * * * * * *** * * *** *
101579 CTCTTAAATAAGAGAAACAAGCA-TGAC-T-ATAA-ACACATTCCCCTCATTATGATAAACGATA
260 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * ** * * * * * *
101640 TTCACGATTT-TCTTTTGCAT-GGA-A-ATCTTTTCTTTATGCTATT--TTCCTTAATATCCAAA
325 --AAC--TTTGTCTTCT-CATAGGATACA-C-GATATTGATTCT-TTGGTTTCGT-A-A--GAAA
** * * * * * * * ** *
101699 TTCATCCTGTAACTATGACAACCTTCGATTCTCGTAAGAGGCTCCA-TGC-T-TTTCGAGATTGG
378 GGC-T--T-T--CT-TGTC-A-C--CAATTTTTGTAA-AGTCT-AAGTTCGTGCCTC-A-AAT--
* * *** * * * *
101761 GAGCTAAAAAC-A-CATTCCCTTCATAAGGATACATGACATTGATGCTTTG-G-TGT-CGC
426 GAG--ACAAACGAGGATTCTAGTCAT---GAT-C-T-TCATT-CT-TTTTGTGAT-TAGGC
** **** * ** *
101817 AAGA-AAATGTTTTCTTTCCATCGTTTTTGATAGAA-G-TA---AAG-TTTGTCTCTTAAATAAG
1 ACTATAAACACATTC--TCC-TC-ATTAGGATA-AACGATATTCACGATTT-TCT-TT---T--G
** * * * ** *
101875 ACAAACAAGAAT-TGTCATGCTAAT-CCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTC-
54 -C-ATGAA-AATCT-T--TTCT-TTGCCCCA---TTTTC---CTTA-ATATCA-AAA---T-TCA
** * * * * *
101937 TCCTCATAAGGAT-ACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTGTCACCAATT
100 TCC-CATAATTATGACAAGCT-TCGATTC-------TCGTAAG--AGGC-TCCATG----C--TT
* * * * ** **
102001 TTTGTAAAGTCTAAGTTCGTGCCTCAA-ATGACACAAACGAGGATTC-T-A-G-T-CATGATC-T
147 TTCG-AGA-T-T--G--GGAG-CT-AAGA--ACACATTC---CCTTCATAAGGATACATGA-CAT
* * * * * ** **** * ***
102059 TCATTCTTTTTGTAATTAGGCACTATAAACACATTC--TCC-TC-TTTAGGATA-AACGATATTC
197 TGATGC-TTTGGT--GT-CGCAAGA-AAATGTTTTCTTTCCACCGTTTTTTATAGAA-G-TA---
* * ** * * *
102119 ATGATTT-TCTTTTGCAT-GGA-AATC-----TT-T--T-CT-TTGCCCCATTTTCATTAATATC
252 AAG-TTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAT-CCCCA--TTC-TT--T-TC
** * * ** * * * * * *
102171 AAAATTCA-TC-CCAT-AA-TTATGACAGGCTTCGATTCACG-TAAGAGGCTCCA-TGCTT-TTC
309 ATGATT-AGGCACCATAAACTT-TGTC-TTC-TC-A-T-AGGAT-ACACGAT--ATTGATTCTTT
* ** * * * ** *** * * *
102229 GAGATT-GGGAGCTAAGAGCACATTCCCT-TCAAAAGGATACATG-ACA-T-TGATGCTTTGGTG
364 G-GTTTCGTAAG--AA-AG-GC-TTTCTTGTCACCA--ATTTTTGTAAAGTCT-AAG--TTCGTG
** *** * * * * * * * * * ** ** ** **
102289 TCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGTCTCTTAAATAAGACA
418 -C-C--TCAAATG-AGACAAACGA-GGATTCTAGT--CA-TGATCTTCAT-TCTT---TTTG-TG
** *
102354 AACAAGC
469 ATTAGGC
* *
102361 ATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAAT
1 ---ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAAT
* * ** * * *
102426 CGTTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCT
63 CTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCT
* * * * *
102491 CGTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATG
128 CGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATG
102556 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTT
193 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTT
* * * *
102621 GACTCTTAAATAAGACAAACAAGAATTCTCATGCTAATCCCCATTTTTTTCATGATCAGGCACCA
258 GTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCA
* *
102686 TAAACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTT
323 TAAACTTTGTCTTCTCAT-AGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTT
* * *
102751 GTCACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAAAGAGACAAACGAGGATTCTAGTAATGA
387 GTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGA
* * *
102816 TTTTCATTCTTTTTGAGATTAGGG
452 TCTTCATTCTTTTTGTGATTAGGC
* * *
102840 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCGT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
* ** * **
102905 TTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCACCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * * * *
102970 AGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
*
103035 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGAC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
*
103100 TCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
*
103165 ACTTTGTCTTCTCATAGGAATACTCGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
326 ACTTTGTCTTCTCATAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
* * *
103230 ACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGATCT
390 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCT
* *
103295 TCATTTTTTTTGTGATTAGGG
455 TCATTCTTTTTGTGATTAGGC
* * *
103316 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCAT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
** * * *
103381 TTCGTTT-CCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTC-TTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
*
103445 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
103510 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
103575 CTCTTAAATAAGACAAA
260 CTCTTAAATAAGACAAA
103592 TAAGCATGAC
Statistics
Matches: 2557, Mismatches: 433, Indels: 464
0.74 0.13 0.13
Matches are distributed among these distances:
472 23 0.01
473 14 0.01
474 154 0.06
475 558 0.22
476 1164 0.46
477 4 0.00
479 4 0.00
480 3 0.00
482 1 0.00
483 7 0.00
484 6 0.00
485 3 0.00
487 10 0.00
488 12 0.00
489 12 0.00
490 1 0.00
491 11 0.00
492 1 0.00
493 14 0.01
494 9 0.00
495 15 0.01
496 32 0.01
497 19 0.01
498 21 0.01
499 30 0.01
500 27 0.01
501 25 0.01
502 9 0.00
503 8 0.00
504 10 0.00
505 6 0.00
506 2 0.00
507 16 0.01
508 4 0.00
509 5 0.00
510 5 0.00
511 1 0.00
513 3 0.00
514 3 0.00
515 6 0.00
516 4 0.00
518 15 0.01
519 14 0.01
525 15 0.01
526 13 0.01
528 4 0.00
529 7 0.00
530 3 0.00
531 2 0.00
533 1 0.00
534 5 0.00
535 7 0.00
536 3 0.00
537 8 0.00
538 3 0.00
539 13 0.01
540 12 0.00
541 8 0.00
542 12 0.00
543 23 0.01
544 28 0.01
545 15 0.01
546 19 0.01
547 21 0.01
548 36 0.01
549 8 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTT
TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGATCTT
CATTCTTTTTGTGATTAGGC
Found at i:101834 original size:284 final size:284
Alignment explanation
Indices: 101324--101883 Score: 895
Period size: 284 Copynumber: 2.0 Consensus size: 284
101314 TTAGGCATGG
**
101324 TAAACACATTGTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
* * * *
101389 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAATTATTACAAGCTTCGATTCACGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCAAAACTATGACAACCTTCGATTCACGTAAGA
* * *
101454 GGCTCCATGCTTTTTGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACACGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACACGACATTGA
*
101519 TGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGTCTCTT
*
101584 AAATAAGAGAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
* *
101608 TAAACACATTCCCCTCATTATGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
** * * *** *
101673 TTATGCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATGACAACCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCAAAACTATGACAACCTTCGATTCACGTAAGA
*
101738 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACACGACATTGA
* * *
101803 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGTCTCTT
101868 AAATAAGACAAACAAG
261 AAATAAGACAAACAAG
101884 AATTGTCATG
Statistics
Matches: 251, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
284 251 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
TAAACACATTCCCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGAAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCAAAACTATGACAACCTTCGATTCACGTAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACACGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGGTTTTCATAGAAGTAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:102302 original size:760 final size:759
Alignment explanation
Indices: 100844--103119 Score: 3777
Period size: 760 Copynumber: 3.0 Consensus size: 759
100834 TGTGATTAGG
100844 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
100909 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
*
100974 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACAAGAC
131 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
*
101039 ATTGATGCTTTGGCGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGC
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGC
*
101104 TCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* * * *
101169 ACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGTTTTCATGT
326 ACTTTGTCTTCTCATAAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
101234 CACCAA-TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* * *
101298 TTCATTCTTTTTGTGATTAGGCA-TGGTAAACACATTGTCCTCATTAGGATAAACGATATTCACG
455 TTCATTCTTTTTGTAATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
* *
101362 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCAAAA
519 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* *
101427 TTATTACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGAGCACAT
584 TTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
* * * *
101492 TCCCTTCATAAGGATACACGACATTGATGCTTTGGTGTCGCAATAAAATGTTTTCTTTCCACCGG
649 TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
101557 TTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGAGAAACAAGCAT
714 TTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
* *
101603 GACTATAAACACATTCCCCTCATTATGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * ** * * * *
101668 TTTCTTTAT-GCTATTTTCCTTAATATCCAAATTCATCCTGTAACTATGACAACCTTCGATTCTC
66 TTTCTTT-TCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTC
* * *
101732 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAAAACACATTCCCTTCATAAGGATACATGA
130 GTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA
* *
101797 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
101862 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 -CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
* *
101927 AAACTTTGTCTCCTCATAAGGATACACGATATTGATTCTTTTGTTTCGTAAGAAAGGCTTTCTTG
324 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
* *
101992 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGACACAAACGAGGATTCTAGTCATGAT
389 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
* *
102057 CTTCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATG
454 CTTCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
*
102122 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAA
519 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
*
102187 TTATGACAGGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
584 TTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
*
102252 TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGT
649 TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
**
102317 TTTTGGTAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
714 TTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
* *
102363 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
*
102428 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* * *
102493 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
102558 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG-
* * *
102623 CTCTTAAATAAGACAAACAAGAATTCTCATGCTAATCCCCATTTTTTTCATGATCAGGCACCATA
260 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
102688 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
325 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
* * *
102753 CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAAAGAGACAAACGAGGATTCTAGTAATGATT
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
102818 TTCATTCTTTTTG-AGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
455 TTCATTCTTTTTGTA-ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
* * * **
102882 ATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAA
519 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* ** * * * *
102947 TTATGGCAAGCACCGATTCTCGTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACAT
584 TTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
* *
103012 TCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
649 TCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
* *
103077 TTTTTATAGAAGTAAAGTTTGACTCTTAAATAAGACAAACAAG
714 TTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
103120 AAGTGTCATG
Statistics
Matches: 1407, Mismatches: 104, Indels: 11
0.92 0.07 0.01
Matches are distributed among these distances:
759 280 0.20
760 1126 0.80
761 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (759 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGC
TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
TCATTCTTTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
TTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATT
ATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTC
CCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
TTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:102590 original size:284 final size:284
Alignment explanation
Indices: 102080--102643 Score: 932
Period size: 284 Copynumber: 2.0 Consensus size: 284
102070 GTAATTAGGC
* * * *
102080 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCGT
* *
102145 TTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTCACGT
66 TTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACGT
* *
102210 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGACA
* *
102275 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGAC
102340 TCTTAAATAAGACAAACAAGCATG
261 TCTTAAATAAGACAAACAAGCATG
102364 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCGT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCGT
* ** * *
102429 TTCTTTTCCCTTTTTTCCA-TAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTCTTTGCCCCATTTT-CATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACG
* * *
102493 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
130 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
102558 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGA
102623 CTCTTAAATAAGACAAACAAG
260 CTCTTAAATAAGACAAACAAG
102644 AATTCTCATG
Statistics
Matches: 259, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
284 257 0.99
285 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCGT
TTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACGT
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGAC
TCTTAAATAAGACAAACAAGCATG
Found at i:103825 original size:284 final size:284
Alignment explanation
Indices: 103315--103875 Score: 917
Period size: 284 Copynumber: 2.0 Consensus size: 284
103305 TGTGATTAGG
*
103315 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * *
103380 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
* *
103445 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
103510 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
103575 CTCTTAAATAAGACAAATAAGCAT
261 CTCTTAAATAAGACAAATAAGCAT
* *
103599 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * * *
103664 TTTC-TTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
66 TTTCGTTT-CCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTC
* *
103728 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* *
103793 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
*
103858 TCTCTTAAATAATACAAA
260 TCTCTTAAATAAGACAAA
103876 CAAGAATTGT
Statistics
Matches: 255, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
283 3 0.01
284 252 0.99
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAATAAGCAT
Found at i:104299 original size:761 final size:760
Alignment explanation
Indices: 102839--104352 Score: 2469
Period size: 761 Copynumber: 2.0 Consensus size: 760
102829 TGAGATTAGG
102839 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * * *
102904 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCACCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCACCGATTCTCG
* * * *
102969 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
103034 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
103099 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
103164 AACTTTGTCTTCTCATAGGAATACTCGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCAAAGGAATACTCGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGT
* * * *
103229 CACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGATC
391 CACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* *
103294 TTCATTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGA
456 TTCATTTTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGA
*
103359 TTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAAT
521 TTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAAT
* *
103424 TATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATT
586 GATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATT
* * *
103489 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTT
651 CCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
*
103554 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAATAAGCAT
716 TTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAATAAGCAT
* * *
103599 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * **
103664 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCACCGATTCTCG
* * * *
103729 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
103794 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
* *
103859 CTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
103924 AACTTTGTCTTCTCAAAAGG-ATACAT-GATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCT
326 AACTTTGTCTTCTC-AAAGGAATAC-TCGA-TATTGATGCTTTGGTTTCATAAGAAAGGCTTTCT
* * **
103987 TGTCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATG
388 TGTCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATG
*
104052 ATTTTCATTCTTTTTT-AGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
453 ATCTTCATT-TTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
* * *
104116 ACGATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCA
517 ACGATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACA
* *
104181 TAATGATGGCAAGCATCGATTCTCGTAGGAGGCTCCAT-TCTTTTTGAGATTGGGAGCTAAGAAC
582 TAATGATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAAC
*
104245 ACATTCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
646 ACATTCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
*
104310 CCGTTTTTTATAGAAGTAAAGTTTGACTCTTAAATAAGACAAA
711 CCGTTTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAA
104353 CAAGAAATGT
Statistics
Matches: 695, Mismatches: 54, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
760 320 0.46
761 369 0.53
762 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (760 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCACCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAGGAATACTCGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGT
CACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTTTTTTTGAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGA
TTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAAT
GATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATT
CCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
TTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAATAAGCAT
Found at i:104680 original size:476 final size:476
Alignment explanation
Indices: 103600--105311 Score: 2719
Period size: 477 Copynumber: 3.6 Consensus size: 476
103590 AATAAGCATG
* *
103600 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
* * * * * * *
103665 TTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * * * *
103730 AAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGACA
* *
103795 TTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
*
103860 TCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
* *
103925 ACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGT
326 ACTTTGTCTTCTCATAAGGATACACGA-TATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGT
* * * * *
103990 CTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATT
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
104055 TTCATTCTTTTT-TAGATTAGGG
455 TTCATTCTTTTTGTA-ATTAGGC
* * *
104077 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCGT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
* ** * * *
104142 TTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATGATGGCAAGCATCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * * *
104207 AGGAGGCTCCATTCTTTTTGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGACA
131 AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGACA
*
104272 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGAC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
*
104337 TCTTAAATAAGACAAACAAGAAATGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
261 TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
*
104402 ACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGA-AAGAAAGGCTTTCTTGT
326 ACTTTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC-ATAAGAAAGGCTTTCTTGT
104466 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
390 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
104531 TTCATTCTTTTTGTAATTAGGC
455 TTCATTCTTTTTGTAATTAGGC
* * * *
104553 ACTATAAACACATTCTCCTCGTTAGGATAAACGATATCCATGATTTTCTCTTGCATAGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
104618 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * *
104683 AAGTGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATTAAA
131 AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACA-T-GA
* * *
104748 AATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
104813 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
259 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
*
104878 AAACTTTGTCTTCTCAT-AGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTT
324 AAACTTTGTCTTCTCATAAGG-ATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTT
* * *
104942 GTCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGA
388 GTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGA
* * *
105007 TCTTCATTTTTTTTTGTGATTAGGG
453 TCTTCA-TTCTTTTTGTAATTAGGC
*
105032 ACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
* * *
105097 TTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTCACGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
* * * *
105162 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGACA
131 AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGACA
* **
105227 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
105292 TCTTAAATAAGACAAACAAG
261 TCTTAAATAAGACAAACAAG
105312 CATGACTATA
Statistics
Matches: 1145, Mismatches: 83, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
476 283 0.25
477 415 0.36
478 253 0.22
479 194 0.17
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGT
AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACTTTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGTC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATCT
TCATTCTTTTTGTAATTAGGC
Found at i:105541 original size:284 final size:284
Alignment explanation
Indices: 105031--105595 Score: 934
Period size: 284 Copynumber: 2.0 Consensus size: 284
105021 TGTGATTAGG
* * * *
105031 GACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* *
105096 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTCACG
66 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACG
* *
105161 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
105226 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGA
105291 CTCTTAAATAAGACAAACAAGCAT
261 CTCTTAAATAAGACAAACAAGCAT
105315 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* ** * *
105380 TTTCTTTTCCCTTTTTTCCA-TAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTC
66 TTTCTTTGCCCCATTTT-CATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCAC
* * *
105444 GTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGA
* *
105509 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTG
105574 ACTCTTAAATAAGACAAACAAG
260 ACTCTTAAATAAGACAAACAAG
105596 AATTCTCATG
Statistics
Matches: 260, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
284 258 0.99
285 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACG
TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGCAT
Found at i:106207 original size:476 final size:476
Alignment explanation
Indices: 105315--106543 Score: 2172
Period size: 476 Copynumber: 2.6 Consensus size: 476
105305 AAACAAGCAT
105315 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
*
105380 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
105445 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
105510 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
* *
105575 CTCTTAAATAAGACAAACAAGAATTCTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
105640 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
* * *
105705 CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACAAGGATTCTAGTAATGATT
391 CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACAAGGATTCTAGTAATGATC
105770 TTCATTCTTTTTGAGATTAGG
456 TTCATTCTTTTTGAGATTAGG
105791 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
105856 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
105921 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
105986 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
*
106051 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
106116 AACTTTGTCTTCTCATAGGAATACTCGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
* * * *
106181 CACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGATC
391 CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACAAGGATTCTAGTAATGATC
* *
106246 TTCATTTTTTTTGTGATTAGG
456 TTCATTCTTTTTGAGATTAGG
* * * *
106267 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCATGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * *
106332 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* * * *
106397 TAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
131 TAGGAGGCTCCAT-TCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGA
* *
106461 CATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
*
106526 TCTCTTAAATAAGACAAA
260 ACTCTTAAATAAGACAAA
106544 TAAGCATGAC
Statistics
Matches: 722, Mismatches: 30, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
476 721 1.00
477 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (476 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACAAGGATTCTAGTAATGATC
TTCATTCTTTTTGAGATTAGG
Found at i:106561 original size:760 final size:761
Alignment explanation
Indices: 105791--107304 Score: 2462
Period size: 761 Copynumber: 2.0 Consensus size: 761
105781 TGAGATTAGG
105791 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * * *
105856 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* * * *
105921 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
105986 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
106051 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
106116 AACTTTGTCTTCTC-ATAGGAATAC-TCGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCT
326 AACTTTGTCTTCTCAAAAGG-ATACAT-GATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCT
* * * *
106178 TGTCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATG
389 TGTCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATG
* *
106243 ATCTTCATT-TTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTC
454 ATCTTCATTCTTTTTT-AGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
* *
106307 ATGATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACA
518 ACGATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACA
* *
106372 TAATTATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAAC
583 TAATGATGGCAAGCATCGATTCTCGTAAGAGGCTCCAT-TCTTTTCGAGATTGGGAGCTAAGAAC
* * *
106436 ACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCA
647 ACATTCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
*
106501 CCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAATAAGCAT
712 CCGTTTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAATAAGCAT
* * *
106551 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * *
106616 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* * * *
106681 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
106746 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
* *
106811 CTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
106876 AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
* * **
106941 TCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
391 TCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
107006 TTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
456 CTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
* * *
107071 ATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAA
521 ATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAA
* * *
107136 TGATGGCAAGCATCGATTCTTGTAGGAGGCTCCATTCTTTTTGAGATTGGGAGCTAAGAACACAT
586 TGATGGCAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACAT
*
107201 TCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
651 TCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
107266 TTTTTATAGAAGTAAAGTTTGACTCTTAAATAAGACAAA
716 TTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAA
107305 CAAGAAATGT
Statistics
Matches: 694, Mismatches: 55, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
760 321 0.46
761 367 0.53
762 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (761 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
TCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
CTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
ATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAA
TGATGGCAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACAT
TCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
TTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAATAAGCAT
Found at i:106777 original size:284 final size:284
Alignment explanation
Indices: 106267--106827 Score: 908
Period size: 284 Copynumber: 2.0 Consensus size: 284
106257 TGTGATTAGG
* *
106267 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCATGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * *
106332 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
* *
106397 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
106462 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
106527 CTCTTAAATAAGACAAATAAGCAT
261 CTCTTAAATAAGACAAATAAGCAT
* *
106551 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * * *
106616 TTTC-TTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
66 TTTCGTTT-CCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTC
* *
106680 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* *
106745 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
*
106810 TCTCTTAAATAATACAAA
260 TCTCTTAAATAAGACAAA
106828 CAAGAATTGT
Statistics
Matches: 254, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
283 3 0.01
284 251 0.99
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAATAAGCAT
Found at i:107630 original size:476 final size:476
Alignment explanation
Indices: 106551--108263 Score: 2712
Period size: 477 Copynumber: 3.6 Consensus size: 476
106541 AAATAAGCAT
* *
106551 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * * * * * *
106616 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * * * * *
106681 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
106746 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
*
106811 CTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
106876 AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCATAAGGATACACGA-TATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
* * * *
106941 TCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
107006 TTTCATTCTTTTT-TAGATTAGG
455 CTTCATTCTTTTTGTA-ATTAGG
* * *
107028 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* ** * * * *
107093 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATGATGGCAAGCATCGATTCTTG
66 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * *
107158 TAGGAGGCTCCATTCTTTTTGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
107223 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
*
107288 CTCTTAAATAAGACAAACAAGAAATGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
107353 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGA-AAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC-ATAAGAAAGGCTTTCTTG
107417 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
107482 CTTCATTCTTTTTGTAATTAGG
455 CTTCATTCTTTTTGTAATTAGG
* * * * * *
107504 CATTATAAACACATTCTCCTCGTTAGGATAAACGATATCCATGATTTTCTCTTGCATAGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
107569 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
66 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * * *
107634 TAAGTGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATTAA
131 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACA-T-G
* * *
107699 AAATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTT
194 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTT
107764 GTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCA
259 GTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCA
*
107829 TAAACTTTGTCTTCTCAT-AGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCT
324 TAAACTTTGTCTTCTCATAAGG-ATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCT
* * *
107893 TGTCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATG
388 TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATG
* *
107958 ATCTTCATTTTTTTTTGTGATTAGG
453 ATCTTCA-TTCTTTTTGTAATTAGG
*
107983 GACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * *
108048 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTCACG
66 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
* * *
108113 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGAC
131 TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* **
108178 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
108243 CTCTTAAATAAGACAAACAAG
261 CTCTTAAATAAGACAAACAAG
108264 CATGACTATA
Statistics
Matches: 1142, Mismatches: 87, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
476 281 0.25
477 415 0.36
478 253 0.22
479 193 0.17
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
TAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGTAATTAGG
Found at i:108493 original size:284 final size:284
Alignment explanation
Indices: 107983--108547 Score: 934
Period size: 284 Copynumber: 2.0 Consensus size: 284
107973 TGTGATTAGG
* * * *
107983 GACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* *
108048 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTCACG
66 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACG
* *
108113 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
108178 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGA
108243 CTCTTAAATAAGACAAACAAGCAT
261 CTCTTAAATAAGACAAACAAGCAT
108267 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* ** * *
108332 TTTCTTTTCCCTTTTTTCCA-TAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTC
66 TTTCTTTGCCCCATTTT-CATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCAC
* * *
108396 GTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGA
* *
108461 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTG
108526 ACTCTTAAATAAGACAAACAAG
260 ACTCTTAAATAAGACAAACAAG
108548 AATTCTCATG
Statistics
Matches: 260, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
284 258 0.99
285 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACG
TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGCAT
Found at i:109159 original size:476 final size:476
Alignment explanation
Indices: 108267--109495 Score: 2190
Period size: 476 Copynumber: 2.6 Consensus size: 476
108257 AAACAAGCAT
108267 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
*
108332 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
108397 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
108462 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
* *
108527 CTCTTAAATAAGACAAACAAGAATTCTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
108592 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
* * *
108657 CACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
391 CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATC
108722 TTCATTCTTTTTGAGATTAGG
456 TTCATTCTTTTTGAGATTAGG
108743 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
108808 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
108873 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
108938 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
*
109003 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
109068 AACTTTGTCTTCTCATAGGAATACTCGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
* * *
109133 CACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGATC
391 CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* *
109198 TTCATTTTTTTTGTGATTAGG
456 TTCATTCTTTTTGAGATTAGG
* * *
109219 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * *
109284 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* * * *
109349 TAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
131 TAGGAGGCTCCAT-TCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGA
* *
109413 CATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
*
109478 TCTCTTAAATAAGACAAA
260 ACTCTTAAATAAGACAAA
109496 TAAGCATGAC
Statistics
Matches: 724, Mismatches: 28, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
476 723 1.00
477 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (476 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGAGATTAGG
Found at i:109513 original size:760 final size:761
Alignment explanation
Indices: 108743--110256 Score: 2480
Period size: 761 Copynumber: 2.0 Consensus size: 761
108733 TGAGATTAGG
108743 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * * *
108808 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* * * *
108873 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
108938 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
109003 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
109068 AACTTTGTCTTCTC-ATAGGAATAC-TCGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCT
326 AACTTTGTCTTCTCAAAAGG-ATACAT-GATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCT
* * * *
109130 TGTCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATG
389 TGTCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATG
* *
109195 ATCTTCATT-TTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTC
454 ATCTTCATTCTTTTTT-AGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
*
109259 ACGATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACA
518 ACGATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACA
* *
109324 TAATTATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAAC
583 TAATGATGGCAAGCATCGATTCTCGTAAGAGGCTCCAT-TCTTTTCGAGATTGGGAGCTAAGAAC
* * *
109388 ACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCA
647 ACATTCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
*
109453 CCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAATAAGCAT
712 CCGTTTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAATAAGCAT
* * *
109503 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * *
109568 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* * * *
109633 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
109698 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
* *
109763 CTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
109828 AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
* * **
109893 TCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
391 TCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
109958 TTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
456 CTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
* * *
110023 ATTTTCTTTTGCAGGGAAATCGTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAA
521 ATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAA
* *
110088 TGATGGCAAGCATCGATTCTCGTAGGAGGCTCCATTCTTTTTGAGATTGGGAGCTAAGAACACAT
586 TGATGGCAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACAT
*
110153 TCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
651 TCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
110218 TTTTTATAGAAGTAAAGTTTGACTCTTAAATAAGACAAA
716 TTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAA
110257 CAAGAATTGT
Statistics
Matches: 696, Mismatches: 53, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
760 321 0.46
761 369 0.53
762 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (761 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
TCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
CTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
ATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAA
TGATGGCAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACAT
TCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
TTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAATAAGCAT
Found at i:109729 original size:284 final size:284
Alignment explanation
Indices: 109219--109779 Score: 917
Period size: 284 Copynumber: 2.0 Consensus size: 284
109209 TGTGATTAGG
*
109219 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * *
109284 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
* *
109349 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
109414 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
109479 CTCTTAAATAAGACAAATAAGCAT
261 CTCTTAAATAAGACAAATAAGCAT
* *
109503 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * * *
109568 TTTC-TTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
66 TTTCGTTT-CCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTC
* *
109632 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* *
109697 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
*
109762 TCTCTTAAATAATACAAA
260 TCTCTTAAATAAGACAAA
109780 CAAGAATTGT
Statistics
Matches: 255, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
283 3 0.01
284 252 0.99
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAATAAGCAT
Found at i:109988 original size:159 final size:156
Alignment explanation
Indices: 109801--110942 Score: 404
Period size: 159 Copynumber: 7.2 Consensus size: 156
109791 ATGCTAATCC
* * *
109801 CCATTC-TTTTCATGATTAGGCACCATAAACTTTGTCTTCTCAAAAGGATACATGATTATTGATG
1 CCATTCTTTTTTA-GATTAGGGACTATAAACTTT-TCTTCTCAAAAGGATACATGA-TATTGATG
*
109865 CTTTGGTTTCATAAGAAAGGCTTTCTTGTCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAA
63 CTTTGGTTTCATAAGAAAGGCTTTCTT-TCTCCAATTTTTGTAAAGACTAAGTTCGTACCTCAAA
*
109930 TGAGACAAACGAGGATTCTAGTAATGATTT
127 TGAGACAAACGAGGATTCTAGTAATGATCT
* ** * ** * * * * *
109960 TCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTTTAGATTAGGGACTATAAAC-TTTTCTTCTCAAAAGGATACATGATATTGATG-C
** ** * ** * * * * * *
110025 TTTCTTTTGCA-GGGAAA-TCGTTTCTTT-TCCCTTTTTTCCTTAATATCAAAATTCAT-CC-CA
64 TTTGGTTT-CATAAGAAAGGC-TTTCTTTCTCCAATTTTT-GTAAAGA-CTAAGTTCGTACCTCA
* * * * * *
110085 TAATGATGGCAAGC-ATCGATTCTCGT-AGGAGGCT
125 -AATGA-GACAAACGA-GGATTCTAGTAATGA-TCT
* * * * * * *
110119 CCATTCTTTTTGAGATT-GGGAGCTAAGAACACATTCCAT-TCAAAAGGGTACATGACATTGATG
1 CCATTCTTTTTTAGATTAGGGA-CT-ATAA-ACTTTTCTTCTCAAAAGGATACATGATATTGATG
* ** * * ** * * *
110182 CTTTGGTGTCGCAAGAAAATGTTTTCTTTC-CACCGTTTTT-TATAGAAGTAAAGTTTG-ACTCT
63 CTTTGGTTTCATAAG-AAAGGCTTTCTTTCTC-CAATTTTTGTAAAG-ACT-AAGTTCGTAC-CT
* * * * * ** * *
110244 TAAATAAGACAAACAAGAATTGTCA-TGCTAATCC
123 CAAATGAGACAAACGAGGATTCT-AGTAATGATCT
* * *
110278 CCATTC-TTTTCATGATTAGGCACCATAAACTTTGTCTTCTCAAAAGGATACATGATTATTGATG
1 CCATTCTTTTTTA-GATTAGGGACTATAAACTTT-TCTTCTCAAAAGGATACATGA-TATTGATG
*
110342 CTTTGGTTTCATAAGAAAGGCTTTCTTGTCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAA
63 CTTTGGTTTCATAAGAAAGGCTTTCTT-TCTCCAATTTTTGTAAAGACTAAGTTCGTACCTCAAA
*
110407 TGAGACAAACGAGGATTCTAGTAATGATTT
127 TGAGACAAACGAGGATTCTAGTAATGATCT
* ** * ** * * * * *
110437 TCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
1 CCATTCTTTTTTAGATTAGGGACTATAAAC-TTTTCTTCTCAAAAGGATACATGATATTGATG-C
** ** * ** * * * * * *
110502 TTTCTTTTGCA-GGGAAA-TCGTTTCTTT-TCCCTTTTTTCCTTAATATCAAAATTCAT-CC-CA
64 TTTGGTTT-CATAAGAAAGGC-TTTCTTTCTCCAATTTTT-GTAAAGA-CTAAGTTCGTACCTCA
* * * * * *
110562 TAATGATGGCAAGC-ATCGATTCTCGT-AGGAGGCT
125 -AATGA-GACAAACGA-GGATTCTAGTAATGA-TCT
* * * * * * *
110596 CCATTCTTTTTGAGATT-GGGAGCTAAGAACACATTCCAT-TCAAAAGGGTACATGACATTGATG
1 CCATTCTTTTTTAGATTAGGGA-CT-ATAA-ACTTTTCTTCTCAAAAGGATACATGATATTGATG
* ** * * ** * * *
110659 CTTTGGTGTCGCAAGAAAATGTTTTCTTTC-CACCGTTTTT-TATAGAAGTAAAGTTTG-ACTCT
63 CTTTGGTTTCATAAG-AAAGGCTTTCTTTCTC-CAATTTTTGTAAAG-ACT-AAGTTCGTAC-CT
* * * * ** * *
110721 TAAATAAGACAAACAAGAAATGTC-A-TGCTAATCC
123 CAAATGAGACAAACGAG-GAT-TCTAGTAATGATCT
* * * * * *
110755 CCATTC-TTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATATTGATTC
1 CCATTCTTTTTTA-GATTAGGGACTATAAACTTT-TCTTCTCAAAAGGATACATGATATTGATGC
* * *
110819 TTTGGTTTCGA-AAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
64 TTTGGTTTC-ATAAGAAAGGCTTTCTT-TCTCCAATTTTTGTAAAGACTAAGTTCGTACCTCAAA
110883 TGAGACAAACGAGGATTCTAGTAATGATCT
127 TGAGACAAACGAGGATTCTAGTAATGATCT
* *
110913 TCATTCTTTTTGTA-ATTAGGCACTATAAAC
1 CCATTCTTTTT-TAGATTAGGGACTATAAAC
110943 ACATTCTCCT
Statistics
Matches: 678, Mismatches: 227, Indels: 157
0.64 0.21 0.15
Matches are distributed among these distances:
156 2 0.00
157 33 0.05
158 148 0.22
159 383 0.56
160 99 0.15
161 13 0.02
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (156 bp):
CCATTCTTTTTTAGATTAGGGACTATAAACTTTTCTTCTCAAAAGGATACATGATATTGATGCTT
TGGTTTCATAAGAAAGGCTTTCTTTCTCCAATTTTTGTAAAGACTAAGTTCGTACCTCAAATGAG
ACAAACGAGGATTCTAGTAATGATCT
Found at i:110397 original size:477 final size:476
Alignment explanation
Indices: 109503--111693 Score: 3508
Period size: 477 Copynumber: 4.6 Consensus size: 476
109493 AAATAAGCAT
*
109503 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * *
109568 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACT-ATGACAAGCTTCGATTCTC
66 TTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATCCCATAA-TGATGACAAGCTTCGATTCTC
* * * * *
109632 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGA
* *
109697 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
*
109762 TCTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
*
109827 AAACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTT
325 AAACTTTGTCTTCTCAAAAGGATACACGA-TATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTT
* *
109892 GTCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGA
389 GTCACCAATTTTTGTAAAGACTAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGA
*
109957 TTTTCATTCTTTTTTAGATTAGG
454 TCTTCATTCTTTTTTAGATTAGG
* *
109980 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * *
110045 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATGATGGCAAGCATCGATTCTCG
66 TTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATCCCATAATGATGACAAGCTTCGATTCTCG
* * * *
110110 TAGGAGGCTCCATTCTTTTTGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
110175 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
110240 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
110305 AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGGATACACGA-TATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
* *
110370 TCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGACTAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
110435 TTTCATTCTTTTTTAGATTAGG
455 CTTCATTCTTTTTTAGATTAGG
* *
110457 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * *
110522 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATGATGGCAAGCATCGATTCTCG
66 TTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATCCCATAATGATGACAAGCTTCGATTCTCG
* * * *
110587 TAGGAGGCTCCATTCTTTTTGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
110652 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
*
110717 CTCTTAAATAAGACAAACAAGAAATGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
110782 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGA-AAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGGATACACGATATTGATGCTTTGGTTTC-ATAAGAAAGGCTTTCTTG
* *
110846 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGACTAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
110911 CTTCATTCTTTTTGTA-ATTAGG
455 CTTCATTCTTTTT-TAGATTAGG
* * * * * *
110933 CACTATAAACACATTCTCCTCGTTAGGATAAACGATATCCATGATTTTCTCTTGCATAGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* *
110998 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCG
66 TTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATCCCATAATGATGACAAGCTTCGATTCTCG
* * *
111063 TAAGTGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATTAA
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACA-T-G
* * *
111128 AAATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTT
194 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTT
111193 GTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCA
259 GTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCA
* *
111258 TAAACTTTGTCTTCTC-ATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCT
324 TAAACTTTGTCTTCTCAAAAGG-ATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCT
* * * * *
111322 TGTCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATG
388 TGTCACCAATTTTTGTAAAGACTAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATG
* *
111387 ATCTTCATTTTTTTTTTGTGATTAGG
453 ATCTTCA-TTCTTTTTT-AGATTAGG
* *
111413 GACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * *
111478 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTCACG
66 TTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATCCCATAATGATGACAAGCTTCGATTCTCG
* *
111543 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* **
111608 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
111673 CTCTTAAATAAGACAAACAAG
261 CTCTTAAATAAGACAAACAAG
111694 CATGACTATA
Statistics
Matches: 1621, Mismatches: 83, Indels: 19
0.94 0.05 0.01
Matches are distributed among these distances:
476 284 0.18
477 809 0.50
478 335 0.21
479 8 0.00
480 185 0.11
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTGCCCTATTTTCCTTAATATCAAAATTCATCCCATAATGATGACAAGCTTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGACTAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTTAGATTAGG
Found at i:111923 original size:284 final size:284
Alignment explanation
Indices: 111413--111977 Score: 934
Period size: 284 Copynumber: 2.0 Consensus size: 284
111403 TGTGATTAGG
* * * *
111413 GACTATAAACACATTCTCCTCTTTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* *
111478 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAGGCTTCGATTCACG
66 TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACG
* *
111543 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCAAAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
111608 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGGTAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGA
111673 CTCTTAAATAAGACAAACAAGCAT
261 CTCTTAAATAAGACAAACAAGCAT
111697 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* ** * *
111762 TTTCTTTTCCCTTTTTTCCA-TAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTC
66 TTTCTTTGCCCCATTTT-CATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCAC
* * *
111826 GTAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGA
* *
111891 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTG
111956 ACTCTTAAATAAGACAAACAAG
260 ACTCTTAAATAAGACAAACAAG
111978 AATTCTCATG
Statistics
Matches: 260, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
284 258 0.99
285 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTGCCCCATTTTCATTAATATCAAAATTCATCCCATAATTATGACAAGCATCGATTCACG
TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTATCCACCGTTTTTGATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGCAT
Found at i:112589 original size:476 final size:476
Alignment explanation
Indices: 111697--112925 Score: 2172
Period size: 476 Copynumber: 2.6 Consensus size: 476
111687 AAACAAGCAT
111697 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
*
111762 TTTCTTTTCCCTTTTTTCCATAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
111827 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
131 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
111892 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
* *
111957 CTCTTAAATAAGACAAACAAGAATTCTCATGCTAATCCCCATTTTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
112022 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
* ** *
112087 CACCAATTTTTGTAAAGTTTAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATT
391 CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATC
112152 TTCATTCTTTTTGAGATTAGG
456 TTCATTCTTTTTGAGATTAGG
112173 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
112238 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
*
112303 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGGACACATTCCATTCAAAAGGGTACATGAC
131 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
112368 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
*
112433 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
112498 AACTTTGTCTTCTCATAGGAATACTCGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
* * *
112563 CACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGATC
391 CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATC
* *
112628 TTCATTTTTTTTGTGATTAGG
456 TTCATTCTTTTTGAGATTAGG
* * *
112649 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * *
112714 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* * * *
112779 TAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
131 TAGGAGGCTCCAT-TCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGA
* *
112843 CATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
*
112908 TCTCTTAAATAAGACAAA
260 ACTCTTAAATAAGACAAA
112926 TAAGCATGAC
Statistics
Matches: 721, Mismatches: 31, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
476 720 1.00
477 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (476 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCAAAAGGGTACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAAGTCTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGAATACACGATATTGATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGT
CACAAATTTTTGTAAAGTCAAAGTTCGTGACTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGAGATTAGG
Found at i:112944 original size:760 final size:761
Alignment explanation
Indices: 112173--113686 Score: 2453
Period size: 761 Copynumber: 2.0 Consensus size: 761
112163 TGAGATTAGG
112173 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * * *
112238 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* * * * *
112303 TAGGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGGACACATTCCATTCAAAAGGGTACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
*
112368 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
112433 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * *
112498 AACTTTGTCTTCTC-ATAGGAATAC-TCGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCT
326 AACTTTGTCTTCTCAAAAGG-ATACAT-GATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCT
* * * *
112560 TGTCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATG
389 TGTCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATG
* *
112625 ATCTTCATT-TTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTC
454 ATCTTCATTCTTTTTT-AGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
*
112689 ACGATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACA
518 ACGATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACA
* *
112754 TAATTATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGT-TTTTCGAGATTGGGAGCTAAGAAC
583 TAATGATGGCAAGCATCGATTCTCGTAAGAGGCTCCAT-TCTTTTCGAGATTGGGAGCTAAGAAC
* * *
112818 ACATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCA
647 ACATTCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
*
112883 CCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAATAAGCAT
712 CCGTTTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAATAAGCAT
* * *
112933 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
* * * *
112998 TTTCTTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
* * * *
113063 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
* *
113128 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
* *
113193 CTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
113258 AACTTTGTCTTCTCAAAAGGGTACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
326 AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
* * **
113323 TCTCCAATTTTTGTAAAGACTTAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
391 TCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
113388 TTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
456 CTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
* * * *
113453 ATTTTCTTTTGTAGGGAAATCGTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAA
521 ATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAA
* *
113518 TGATGGCAAGCATCGATTCTCGTAGGAGGCTCCATTCTTTTTGAGATTGGGAGCTAAGAACACAT
586 TGATGGCAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACAT
*
113583 TCCATTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
651 TCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
113648 TTTTTATAGAAGTAAAGTTTGACTCTTAAATAAGACAAA
716 TTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAA
113687 CAAGAAATGT
Statistics
Matches: 693, Mismatches: 56, Indels: 9
0.91 0.07 0.01
Matches are distributed among these distances:
760 319 0.46
761 368 0.53
762 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (761 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCAGGGAAATCG
TTTCTTTACCCTATTTTCCATAATATCAAAATTCATCCCATAACTATGACAAGCATCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCATTCAAAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGA
CTCTTAAATAAGACAAACAAGAAGTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCAAAAGGATACATGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTG
TCACAAATTTTTGTAAAGACAAAGTTCGTACCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
CTTCATTCTTTTTTAGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACG
ATTTTCTTTTGCAGGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAA
TGATGGCAAGCATCGATTCTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACAT
TCCATTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
TTTTGATAGAAGTAAAGTTTGACTCTTAAATAAGACAAATAAGCAT
Found at i:113159 original size:284 final size:284
Alignment explanation
Indices: 112649--113209 Score: 917
Period size: 284 Copynumber: 2.0 Consensus size: 284
112639 TGTGATTAGG
*
112649 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * *
112714 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCACATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
* *
112779 TAAGAGGCTCCATGTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
112844 ATTGATGCTTTGGTGTCGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
112909 CTCTTAAATAAGACAAATAAGCAT
261 CTCTTAAATAAGACAAATAAGCAT
* *
112933 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAACTCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* * * * *
112998 TTTC-TTTACGCTATTTTCCATAATATCCAAATTCATCCCGTAACTATGACAAGCTTCGATTCTC
66 TTTCGTTT-CCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTC
* *
113062 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGTTAAGAACACGTTCCCTTCATAAGGATACATGA
130 GTAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
* *
113127 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
195 CATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
*
113192 TCTCTTAAATAATACAAA
260 TCTCTTAAATAAGACAAA
113210 CAAGAATTGT
Statistics
Matches: 255, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
283 3 0.01
284 252 0.99
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTATTTTCCATAATATCAAAATTCATCACATAACTATGACAAGCGTCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTGCGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGCTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAATAAGCAT
Found at i:114875 original size:284 final size:284
Alignment explanation
Indices: 114365--114929 Score: 988
Period size: 284 Copynumber: 2.0 Consensus size: 284
114355 TGTGATTAGG
*
114365 GACTATAAACACATTCTCCTCATTAGGATAAATGATATTCACGATTTTCTTTTGCATGGAAATCA
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
*
114430 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCGTCGATTCTCG
66 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
*
114495 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
114560 ATTGATGCTTTGGTGTTGTAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTGT
114625 CTCTTAAATAAGACAAACAAGCAT
261 CTCTTAAATAAGACAAACAAGCAT
*
114649 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
* *
114714 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCTCATAATTATGGCAAGCATCGATTCTCG
66 TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
* * * *
114779 TAA-AGGGCTCCATTCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATTAGGGTACTTGA
131 TAAGA-GGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGA
*
114843 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTG
114908 TCTCTTAAATAAGACAAACAAG
260 TCTCTTAAATAAGACAAACAAG
114930 AATGGTCATG
Statistics
Matches: 266, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
283 1 0.00
284 265 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCA
TTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTATGGCAAGCATCGATTCTCG
TAAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAACAAGCAT
Found at i:115394 original size:760 final size:763
Alignment explanation
Indices: 113887--115405 Score: 2537
Period size: 760 Copynumber: 2.0 Consensus size: 763
113877 GTAATTAGGC
* * *
113887 ACTATAAACACATTCTTCTCGTTAGGATAAACGATATCCATGATTTTCTCTTGCATAGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATCCACGATTTTCTCTTGCATAGAAATCTT
*
113952 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCAACCCATAATTATGACAAGCTTCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGT
*
114017 AAGTGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCATTCATAAGGATACATTAAA
131 AAGTGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCATTCATAAGGATACATTAAA
* * *
114082 AATTGATGCTTTGGTGTTGCAAGAAAATGTTTTCTTTCCATCGTTTTTGATAGAAGTAAAGTTTG
196 AATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTG
*
114147 TCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
261 TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
114212 AAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTG
326 AAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTG
* *
114277 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCGAATGAGACAAACGAGGATTCTAGTCATGAT
391 TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGAT
*
114342 CTTCATTTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTCAC
456 CTTCATTTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
*
114407 GATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATA
521 AATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATA
* *
114472 ATTATGGCAAGCGTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
586 AATATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
* * *
114537 TTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTTGTAAGAAAATGTTTTCTTTCCACCG
651 TTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
114602 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
716 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
* * *
114650 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATCCACGATTTTCTCTTGCATAGAAATCTT
* ** * * *
114715 TTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCTCATAATTATGGCAAGCATCGATTCTCGT
66 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGT
* * * * *
114780 AAAG-GGCTCCATTCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATTAGGGTAC-TT-G
131 -AAGTGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCATTCATAAGGATACATTAA
* *
114842 ACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTT
195 AAATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTT
*
114907 GTCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCA
260 GTCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCA
* *
114972 TAAACTTTGTCTTCTTATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTT
325 TAAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTT
* *
115037 GTCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGA
390 GTCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGA
*
115102 TCTTCA-TTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTTATTAGGATAAACGATATTCA
455 TCTTCATTTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCA
* *
115166 CAATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCTTAATATCAAAATT-ATTCCCA
520 CAATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCA-TCCCA
**
115230 TAAATATGGCAAGCATCGATTCTCAG-AAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAAC
584 TAAATATGGCAAGCATCGATTCTC-GTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAAC
*
115294 ACATTCCCTTCAAAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
648 ACATTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA
* * *
115359 CCGTTTTTTATAGAAGTAATGTTTGTCTCTTAAATAATACAAACAAG
713 CCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG
115406 AATTGTCATG
Statistics
Matches: 705, Mismatches: 48, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
759 1 0.00
760 278 0.39
761 254 0.36
762 2 0.00
763 167 0.24
764 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (763 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATCCACGATTTTCTCTTGCATAGAAATCTT
TTCTTTGCCCCATTTTCCTTAATATCAAAATTCAACCCATAATTATGACAAGCATCGATTCTCGT
AAGTGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAACACATTCCATTCATAAGGATACATTAAA
AATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAAAGAAGTAAAGTTTG
TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
AAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTCATAAGAAAGGCTTTCTTG
TCACAAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGAT
CTTCATTTTTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCAC
AATTTTCTTTTGCATGGAAATCATTTCGTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATA
AATATGGCAAGCATCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACA
TTCCCTTCAAAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCG
TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCATG
Found at i:115558 original size:476 final size:475
Alignment explanation
Indices: 114649--115881 Score: 1990
Period size: 476 Copynumber: 2.6 Consensus size: 475
114639 AAACAAGCAT
114649 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
*
114714 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCTCATAATTATGGCAAGCATCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATT-ATCCCATAATTATGGCAAGCATCGATTCTCG
* * * *
114779 TAA-AGGGCTCCATTCTTTTCGAGATTAGGAGCTAAGAACACATTCCCTTCATTAGGGTACTTGA
130 CAAGA-GGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA
*
114843 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTAAAGAAGTAAAGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* *
114908 TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCTATTCTTTTCATGATTAGGCACCAT
259 TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCAT
* * *
114973 AAACTTTGTCTTCTTATAGGAATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
324 AAACTTTGTCTTCTAAAAGGAATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTG
* * *
115038 TCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTCATGAT
389 TCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACAAGCATTCTAGTAATGAT
*
115103 CTTCATTTTTTTTGTGATTAGG
454 CTTCATTCTTTTTGTGATTAGG
* *
115125 GACTATAAACACATTCTCCTTATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
*
115190 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTATTCCCATAAATATGGCAAGCATCGATTCTCA
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTA-TCCCATAATTATGGCAAGCATCGATTCTC-
* *
115255 G-AAGAGGCTCCATTTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCAAAAGGGTACATGA
129 GCAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGA
*
115319 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAATGTTTG
194 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTG
* *
115384 TCTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCAT
259 TCTCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCAT
115449 AAACTTTGTCTTCTCAAAAGG-ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCT
324 AAACTTTGTCTTCT-AAAAGGAATACACGA-TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCT
* *
115513 TGTC-TCCAATTTTTGTAAAGTCTAAGTTCGTG-CTCAAAAGAGACAAACGAGCATTCTAGTAAT
387 TGTCAT-AAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACAAGCATTCTAGTAAT
115576 GATCTTCATTCTTTTTGTGATTAGG
451 GATCTTCATTCTTTTTGTGATTAGG
* ** * *
115601 CACGGTAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTACATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* ** * * * *
115666 TTTCTTTGCCCCATTTTCCTTAATATCAAAAGTCATCCCGTAATTATGACAAGCTTCGATTCTCG
66 TTTCTTTTCCCTTTTTTCCTTAATATCAAAA-TTATCCCATAATTATGGCAAGCATCGATTCTCG
* * *
115731 CAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGAC
130 CAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGAC
*
115796 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
195 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGT
115861 CTCTTAAATAAGACAAACAAG
260 CTCTTAAATAAGACAAACAAG
115882 CATGACTATA
Statistics
Matches: 702, Mismatches: 47, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
475 2 0.00
476 630 0.90
477 70 0.10
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (475 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTTCCCTTTTTTCCTTAATATCAAAATTATCCCATAATTATGGCAAGCATCGATTCTCGC
AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGGTACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAGTTTGTC
TCTTAAATAAGACAAACAAGAATGGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACCATAA
ACTTTGTCTTCTAAAAGGAATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTC
ATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACAAGCATTCTAGTAATGATCT
TCATTCTTTTTGTGATTAGG
Found at i:116116 original size:284 final size:284
Alignment explanation
Indices: 115606--116165 Score: 949
Period size: 284 Copynumber: 2.0 Consensus size: 284
115596 TTAGGCACGG
115606 TAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTACATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTACATGGAAATCTTTTCT
* *
115671 TTGCCCCATTTTCCTTAATATCAAAAGTCATCCCGTAATTATGACAAGCTTCGATTCTCGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
115736 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
*
115801 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
115866 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
* * *
115890 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTACATGGAAATCTTTTCT
* * * * *
115955 TTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
* * * * *
116020 GGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGATATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
* *
116085 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTCTCAT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
*
116150 AAATACGACAAACAAG
261 AAATAAGACAAACAAG
116166 AATTGTCATG
Statistics
Matches: 257, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
284 257 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAAAGATATTCACGATTTTCTTTTACATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAAGTCATCCCGTAACTATGACAAGCTTCGATTCTCGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAAGACAAACAAGCATGACTA
Found at i:116662 original size:757 final size:758
Alignment explanation
Indices: 115125--123757 Score: 13635
Period size: 760 Copynumber: 11.4 Consensus size: 758
115115 TGTGATTAGG
* **
115125 GACTATAAACACATTCTCCTTATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * * * * * * *
115190 TTTCTTTTCCCTTTTTTCCTTAATATCAAAATT-ATTCCCATAAATATGGCAAGCATCGATTCTC
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCA-TCCCGTAACTATGACAAGCTTCGATTCTC
* * * * *
115254 AG-AAGAGGCTCCAT-TTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCAAAAGGGTACAT
130 -GTAAGAGGCTCCATGCTTTTT-GAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACAT
* *
115317 GACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGTAATGTT
193 GACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTT
* ** *
115382 TGTCTCTTAAATAATACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATAAGGCACC
258 TGTCTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACC
* *
115447 ATAAACTTTGTCTTCTCAAAAGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTC
323 ATAAACTTTGTCTTCTCATAAGGATACACGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTC
* * *
115512 TTGTCTCCAATTTTTGTAAAGTCTAAGTTCGTG-CTCAAAAGAGACAAACGAGCATTCTAGTAAT
387 TTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAAT
** *
115576 GATCTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAAAGATATTC
452 GATC-T-ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTC
* * * *
115641 ACGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAAGTCATCCCG
515 ACAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCA
* *
115706 TAATTATGACAAGCTTCGATTCTCGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCA
580 TAATTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCA
115771 CATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCAC
645 CATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCAC
115836 CGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
710 CGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
115885 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
115950 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* *
116015 TAAGAGGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGAT
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
116080 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
116145 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
116210 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
**
116275 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
116340 T-TTCTTTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAACGATATTCACAATT
456 TATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATT
116404 TTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
521 TTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
116469 TGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
586 TGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
* * *
116534 CTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTC
651 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
116599 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
716 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
116642 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
*
116707 TTTCTTTACACTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* *
116772 TAAGAGGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGAT
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
116837 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
116902 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
116967 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
**
117032 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
117097 T-TTCTTTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAACGATATTCACAATT
456 TATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATT
* *
117161 TTCTTTTGCATGGAAATCTTTTCTTCGCCCCATTTTCCTTAATATCAAAATTCATCCAATAATTA
521 TTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
117226 TGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
586 TGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
* * *
117291 CTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTC
651 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
117356 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
716 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
*
117399 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTCCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
117464 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
117529 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
117594 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* * *
117659 CTCATAAATATGAGAAACAAGAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACCATA
261 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
117724 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
**
117789 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
117854 T-TTCTTTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAACGATATTCACAATT
456 TATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATT
*
117918 TTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCAATAATTA
521 TTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
117983 TGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
586 TGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
* * *
118048 CTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTC
651 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
118113 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
716 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
*
118156 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTCCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
118221 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
118286 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
118351 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* * *
118416 CTCATAAATATGAGAAACAAGAATTGTCATGCTAATCCCCAATCTTTTCATGATTAGGCACCATA
261 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
118481 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTTT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
*
118546 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTTTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
*
118611 TACATTCTTTTTGTGATTAGGCA-TGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACA
456 T--ATTCTTTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
118675 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
518 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
118740 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
583 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
*
118805 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTTCACCGT
648 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
* *
118870 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGGCAAACAAGCTT
713 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
118916 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
118981 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* * *
119046 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
*
119111 ATTGATGCTTTTGG-GTCGCAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTG
196 ATTGATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
119175 TCTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
119240 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
325 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
** *
119305 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACCAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
119370 CTTCTTTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
455 C-T-ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
119435 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
518 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
119500 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
583 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
* *
119565 TCCCTTCATAAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAATTGTTTTCTTTCCACCGT
648 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
119630 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAATACAAACAAGCAT
713 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
*
119676 GACTATAAACACATTCTCCTCATTAGGATTAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
119741 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* *
119806 TAAGAGGCTCCATGCTTTTTGAGATTAGGATCTAAGATCACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
119871 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* *
119936 CTCATAAATATGAGAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
120001 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTTT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
120066 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
**
120131 TACATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 T--ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
120196 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
519 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
120261 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
584 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
120326 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
649 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
* *
120391 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGGCAAACAAGCTT
714 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
120436 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
120501 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* * * *
120566 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACTCGTTCCCTTCATAAGGATAAATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
* * *
120631 ATTGATGCTTTTGG-GACGTAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTG
196 ATTGATGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTG
120695 TCTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
260 TCTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCAT
120760 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
325 AAACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
** *
120825 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGGAAACCAGGATTCTAGTAATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
120890 CTTCTTTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
455 C-T-ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
120955 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
518 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
* *
121020 TTATGTCAAGCTTCGATTCTCGCAAGATGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
583 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
121085 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
648 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
121150 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAATACAAACAAGCAT
713 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
121196 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
121261 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
121326 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
* * * *
121391 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTCATTGAAGTAATGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* ** * *
121456 CTCTTAAATAAAACAAACGAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCACA
261 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* * * *
121521 AACTTTGTCTTCTCAT-AGGAATACATGATATTGATTCTTTGGTTTCATAGGAAAGGCTTTCTTC
326 AACTTTGTCTTCTCATAAGG-ATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTG
* * *
121585 TCACAAATTTTTGTAAAGTCTGAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
**
121650 CTTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACA
455 C-T-ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACA
121715 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
518 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAA
121780 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
583 TTATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACAT
121845 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
648 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGT
*
121910 TTCTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
713 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
121956 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
**
122021 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* * *
122086 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
*
122151 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
*
122216 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
122281 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
*
122346 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
**
122411 TTCATTCTTTTTGTGATTAGGCACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
456 -T-ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAA
122476 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
519 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAAT
122541 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
584 TATGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATT
* *
122606 CCCTTCATAAGGATACATGACATTGATGCCTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCATT
649 CCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTT
* *
122671 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAAACAAACAAGAAAT
714 TTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAG-CAT
* * * * * *
122717 GTCATCCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGTATACA
1 GAC-T-ATAA-ACACATTC---TCCTCATTAGG----ATAAAC---G-------AT-A-T-T-CA
* * * * * * * *
122782 CGATTATTGATGCTTTGGTTTCGTAAGAAAGGC-TTTCTAGTCAC-CAATTTT--TGTA-AAGTC
42 TGA-T-TT--T-C-TT--TTGCAT-GGAAA-TCTTTTCT--TTACGCTATTTTCCT-TATTA-TC
* * * * * * * *** * * * * * *
122842 TAAGTTCGTGCCTTTAGTGA-GACGAA-CGAGGATTCTAGTCATGA-TCTTCATTCTTTTTGTGA
93 AAAATTCATCCCGTAACT-ATGAC-AAGCTTCGATTCTCGT-AAGAGGCTCCATGCTTTTTGAGA
* * * * * * * * * ** * * *
122904 TTTGGGA-CTATA-AACACATTCTCC-TCATTAGGATAAACGATATTCACGATTTTCTTTTGCAT
155 -TTGGGAGCTA-AGATCACGTTC-CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAA
* * * * * * ** * * * *
122966 GGAAATCTTTTCTTTGCCCCAT-TTTCCTTA-A-TA-TCAAAATTCATCCCATAATTATGACAAG
217 GAAAATGTTTTCTTT-CCAC-TGTTT-TTTATAGAAGT-AAAGTTTGTCTCATAAATACGACAAA
** * * * * ** * * * * *
123027 CTTCG-A-T-TCACG-TAAGAGGCTCAACGCTTTTCGA-GATT-GGGAGCTAAACACACATT-CC
278 C-AAGAATTGTCATGCT-A-A-TCCCCATTCTTTTC-ATGATTAGGCA-CCATA-A-ACTTTGTC
* * * * * * * * * *
123085 CT-TCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTT-TCCATC-GT
335 TTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAG-AAAGGCTTTCTTGT-CACCAAT
* * * * *
123147 TTTTGATAGATGT-AAAGTTTGT-CTCTTAAATAAGAC--A--A--A--C----AA-G-------
398 TTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACGAGGATTCTAGTAATGATCTATT
* *
123190 C--------A-T--G-ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATATTCT
460 CTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCT
* *** * * * *
123243 TTTACATGGAAATCTTTTCTTTATGCTATTTTCCTTAATATCAAAATTCATCCTATAACTATGAC
525 TTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTC
* * * * *
123308 AAGCTTCGATTCTCGTAAGACGCTCCATGCTTTTCGAGATTGGGAGTTAAGAACACATTCCCTTC
590 AAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTC
* * * *
123373 ATAAGCATACATGACATTGATGCTTTGGTTTTGCAAGAAAATGTTTTCTTTCCACCGTTTCTGAT
655 ATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGAT
123438 AGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
720 AGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
123477 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
* * * * * * * *
123542 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACG
66 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
* * * * *
123607 CAAAAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
* * *
123672 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
* *
123737 CTCTTAAATAAGACAAACAAG
261 CTCATAAATACGACAAACAAG
123758 CATGACTATA
Statistics
Matches: 7407, Mismatches: 371, Indels: 224
0.93 0.05 0.03
Matches are distributed among these distances:
725 5 0.00
726 29 0.00
727 116 0.02
728 7 0.00
730 2 0.00
731 1 0.00
732 1 0.00
734 2 0.00
735 1 0.00
736 4 0.00
737 1 0.00
738 1 0.00
739 1 0.00
740 2 0.00
747 1 0.00
750 6 0.00
754 9 0.00
757 2249 0.30
758 3 0.00
759 82 0.01
760 4274 0.58
761 282 0.04
762 2 0.00
763 3 0.00
764 7 0.00
765 1 0.00
767 9 0.00
771 6 0.00
773 1 0.00
774 1 0.00
781 2 0.00
782 2 0.00
783 3 0.00
784 1 0.00
785 4 0.00
786 1 0.00
787 3 0.00
789 2 0.00
790 1 0.00
791 4 0.00
792 5 0.00
793 13 0.00
794 178 0.02
795 65 0.01
796 14 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (758 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
CTCATAAATACGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATT
TTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
TGTCAAGCTTCGATTCACGCAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCC
CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGCAT
Found at i:116869 original size:284 final size:284
Alignment explanation
Indices: 116359--116922 Score: 930
Period size: 284 Copynumber: 2.0 Consensus size: 284
116349 GTGATTAGGC
*
116359 ACTATAAACACATTTTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * *
116424 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACACCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
116489 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
116554 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
*
116619 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
**
116643 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * * *
116708 TTCTTTACACTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACACCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
* * * * *
116773 AAGAGGCTCCATGCTTTTTGAGATTGGGATCTAAGATCACGTTCCCTTCATAAGGATACATGATA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
* * *
116838 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
*
116903 TCATAAATACGACAAACAAG
261 TCATAAATAAGACAAACAAG
116923 AATTGTCATG
Statistics
Matches: 258, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 258 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACACCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:117626 original size:284 final size:284
Alignment explanation
Indices: 117116--117679 Score: 912
Period size: 284 Copynumber: 2.0 Consensus size: 284
117106 GTGATTAGGC
* *
117116 ACTATAAACACATTTTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTT
* * *
117181 TTCTTCGCCCCATTTTCCTTAATATCAAAATTCATCCAATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTCACCCCATTTTCCTTAATATCAAAATTCATCCAATAACTATGACAAGCTTCGATTCACGC
117246 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
117311 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
*
117376 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
**
117400 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTCCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTT
* * * * ** * *
117465 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTCACCCCATTTTCCTTAATATCAAAATTCATCCAATAACTATGACAAGCTTCGATTCACGC
* * *
117530 AAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
* * *
117595 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
* *
117660 TCATAAATATGAGAAACAAG
261 TCATAAATAAGACAAACAAG
117680 AATTGTCATG
Statistics
Matches: 256, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
284 256 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTT
TTCTTCACCCCATTTTCCTTAATATCAAAATTCATCCAATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:118383 original size:284 final size:284
Alignment explanation
Indices: 117873--118436 Score: 921
Period size: 284 Copynumber: 2.0 Consensus size: 284
117863 GTGATTAGGC
* *
117873 ACTATAAACACATTTTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTT
* * *
117938 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCAATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCAATAACTATGACAAGCTTCGATTCACGC
118003 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
118068 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
*
118133 TCTTAAATAAGACAAACAAGCATG
261 TCATAAATAAGACAAACAAGCATG
**
118157 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTCCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTT
* * * ** * *
118222 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCAATAACTATGACAAGCTTCGATTCACGC
* * *
118287 AAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
* * *
118352 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
* *
118417 TCATAAATATGAGAAACAAG
261 TCATAAATAAGACAAACAAG
118437 AATTGTCATG
Statistics
Matches: 257, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 257 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTCCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCAATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTCTGATAGAAGTAAAGTTTGTC
TCATAAATAAGACAAACAAGCATG
Found at i:119165 original size:284 final size:284
Alignment explanation
Indices: 118637--119196 Score: 915
Period size: 284 Copynumber: 2.0 Consensus size: 284
118627 TTAGGCATGG
118637 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
118702 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
*
118767 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
118832 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTTCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
*
118897 AAATAAGGCAAACAAGCTTGACTA
261 AAATAAGACAAACAAGCTTGACTA
**
118921 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * *
118986 TTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
* *
119051 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * *
119116 TGCTTTTGG-GTCGCAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGTCTCA
196 TGC-TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCA
*
119180 TAAATACGACAAACAAG
260 TAAATAAGACAAACAAG
119197 AATTGTCATG
Statistics
Matches: 254, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
284 249 0.98
285 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAAGACAAACAAGCTTGACTA
Found at i:119956 original size:284 final size:284
Alignment explanation
Indices: 119393--119945 Score: 908
Period size: 284 Copynumber: 1.9 Consensus size: 284
119383 GTGATTAGGC
119393 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * *
119458 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
*
119523 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
*
119588 TTCATGCTTTGGTGTCGCAAGAAATTGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
*
119653 TCTTAAATAATACAAACAAGCATG
261 TCATAAATAATACAAACAAGCATG
* **
119677 ACTATAAACACATTCTCCTCATTAGGATTAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * * * *
119742 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
* * * *
119807 AAGAGGCTCCATGCTTTTTGAGATTAGGATCTAAGATCACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
* * *
119872 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTC
196 TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
119937 TCATAAATA
261 TCATAAATA
119946 TGAGAAACAA
Statistics
Matches: 247, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
284 247 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGC
AAGAGGCTCCATGCTTTTCGAGATTAGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
TTCATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
TCATAAATAATACAAACAAGCATG
Found at i:120667 original size:284 final size:284
Alignment explanation
Indices: 120157--120716 Score: 897
Period size: 284 Copynumber: 2.0 Consensus size: 284
120147 TTAGGCACGG
120157 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
120222 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
* *
120287 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATAAATGACATTGA
* *
120352 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGACGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
*
120417 AAATAAGGCAAACAAGCTTGACTA
261 AAATAAGACAAACAAGCTTGACTA
**
120441 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * *
120506 TTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
* *
120571 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACTCGTTCCCTTCATAAGGATAAATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATAAATGACATTGA
* * * *
120636 TGCTTTTGG-GACGTAAGAAAATGTTTTCTTTCCGCTGTTTTTTATAGAAGTAAAGTTTGTCTCA
196 TGC-TTTGGTGACGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCA
*
120700 TAAATACGACAAACAAG
260 TAAATAAGACAAACAAG
120717 AATTGTCATG
Statistics
Matches: 252, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
284 247 0.98
285 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATAAATGACATTGA
TGCTTTGGTGACGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCAT
AAATAAGACAAACAAGCTTGACTA
Found at i:121423 original size:284 final size:284
Alignment explanation
Indices: 120913--121473 Score: 960
Period size: 284 Copynumber: 2.0 Consensus size: 284
120903 GTGATTAGGC
120913 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * *
120978 TTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCTCGC
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCTCGC
*
121043 AAGATGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
*
121108 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTCATAGAAGTAAAGTTTGTC
*
121173 TCTTAAATAATACAAACAAGCATG
261 TCTTAAATAAAACAAACAAGCATG
**
121197 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTT
1 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
* * * * *
121262 TTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGT
66 TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCTCGC
* * *
121327 AAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGACA
131 AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
* *
121392 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTCATTGAAGTAATGTTTGTC
196 TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTCATAGAAGTAAAGTTTGTC
121457 TCTTAAATAAAACAAAC
261 TCTTAAATAAAACAAAC
121474 GAGAATTGTC
Statistics
Matches: 259, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
284 259 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (284 bp):
ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTT
TTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCTCGC
AAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTCATAGAAGTAAAGTTTGTC
TCTTAAATAAAACAAACAAGCATG
Found at i:122187 original size:284 final size:284
Alignment explanation
Indices: 121677--122236 Score: 940
Period size: 284 Copynumber: 2.0 Consensus size: 284
121667 TTAGGCACGG
121677 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * *
121742 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
*
121807 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* *
121872 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCAT
121937 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
**
121961 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* * * *** * *
122026 TTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
122091 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
* * *
122156 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGTCTCAT
196 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCAT
*
122221 AAATATGACAAACAAG
261 AAATAAGACAAACAAG
122237 AATTGTCATG
Statistics
Matches: 256, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
284 256 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
TTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCAT
AAATAAGACAAACAAGCATGACTA
Found at i:123021 original size:477 final size:476
Alignment explanation
Indices: 121956--123189 Score: 2065
Period size: 477 Copynumber: 2.6 Consensus size: 476
121946 AAACAAGCAT
*
121956 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * *** * *
122021 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCTTGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACG
122086 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
122151 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTGTTTTTTATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
* * * *
122216 CTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAATGTCATCCTAATCCCCATTCTTTTCATGATTAGGCACCATA
* *
122281 AACTTTGTCTTCTCATAAGGATACACGATATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGT
326 AACTTTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTAGT
122346 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
391 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
122411 TTCATTCTTTTTGTGATTAGG
456 TTCATTCTTTTTGTGATTAGG
* ** *
122432 CACGGTAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
*
122497 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACG
66 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACG
* *
122562 CAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
122627 ATTGATGCCTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCATTTTTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
*
122692 CTCTTAAATAAAACAAACAAGAAATGTCATCCTAATCCCCATTCTTTTCATGATTAGGCACCATA
261 CTCTTAAATAAGACAAACAAGAAATGTCATCCTAATCCCCATTCTTTTCATGATTAGGCACCATA
*
122757 AACTTTGTCTTCTCATAAGTATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTAG
326 AACTTTGTCTTCTCATAAGGATACACGA-TATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTAG
* ** * * *
122822 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTTAGTGAGACGAACGAGGATTCTAGTCATGAT
390 TCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTAATGAT
*
122887 CTTCATTCTTTTTGTGATTTGG
455 CTTCATTCTTTTTGTGATTAGG
122909 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
122974 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACG
66 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACG
* *
123039 TAAGAGGCTCAACGCTTTTCGAGATTGGGAGCTAA-ACACACATTCCCTTCATAAGGATACATGA
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA-ACACATTCCCTTCATAAGGATACATGA
* *
123103 CATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGATGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTG
123168 TCTCTTAAATAAGACAAACAAG
260 TCTCTTAAATAAGACAAACAAG
123190 CATGACTATA
Statistics
Matches: 704, Mismatches: 52, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
476 326 0.46
477 378 0.54
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACG
TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAACAAGAAATGTCATCCTAATCCCCATTCTTTTCATGATTAGGCACCATA
AACTTTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTAGT
CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGAGGATTCTAGTAATGATC
TTCATTCTTTTTGTGATTAGG
Found at i:123421 original size:284 final size:284
Alignment explanation
Indices: 122909--124038 Score: 1884
Period size: 284 Copynumber: 4.0 Consensus size: 284
122899 TGTGATTTGG
122909 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* *
122974 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACG
66 TTTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACG
* *
123039 TAAGAGGCTCAACGCTTTTCGAGATTGGGAGCTAA-ACACACATTCCCTTCATAAGGATACATGA
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGA-ACACATTCCCTTCATAAGGATACATGA
* * * *
123103 CATTGATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGATGTAAAGTTTG
195 CATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTG
123168 TCTCTTAAATAAGACAAACAAGCAT
260 TCTCTTAAATAAGACAAACAAGCAT
* *
123193 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATATTCTTTTACATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
** * * *
123258 TTTCTTTATGCTATTTTCCTTAATATCAAAATTCATCCTATAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACG
* * *
123323 TAAGACGCTCCATGCTTTTCGAGATTGGGAGTTAAGAACACATTCCCTTCATAAGCATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* *
123388 ATTGATGCTTTGGTTTTGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGT
123453 CTCTTAAATAAGACAAACAAGCAT
261 CTCTTAAATAAGACAAACAAGCAT
*
123477 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * *
123542 TTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACG
66 TTTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACG
* * *
123607 CAAAAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
123672 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGT
123737 CTCTTAAATAAGACAAACAAGCAT
261 CTCTTAAATAAGACAAACAAGCAT
*
123761 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCT
1 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
* * * * *
123826 TTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCG
66 TTTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACG
* * *
123891 TAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGAC
131 TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
* * *
123956 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTCATAGAAGTAATGTTTGT
196 ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGT
*
124021 CTCTTAAATAAAACAAAC
261 CTCTTAAATAAGACAAAC
124039 GAGAATTGTC
Statistics
Matches: 789, Mismatches: 56, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
284 788 1.00
285 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCT
TTTCTTTACCCCATTTTCCTTAATATCAAAATTCATCCCATAACTATGACAAGCTTCGATTCACG
TAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGT
CTCTTAAATAAGACAAACAAGCAT
Found at i:124752 original size:284 final size:284
Alignment explanation
Indices: 124242--125082 Score: 1520
Period size: 284 Copynumber: 3.0 Consensus size: 284
124232 TTAGGCACGG
**
124242 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
124307 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
124372 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
124437 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
124502 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
124526 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
124591 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
124656 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
124721 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
124786 AAATAAGACAAACAAGCATGACTA
261 AAATAAGACAAACAAGCATGACTA
124810 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * * * * *
124875 TTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTATGACAAGCTTCGATTCTCGTAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
* * *
124940 GGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
* * *
125005 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTCATAGAAGTAATGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
*
125070 AAATAAAACAAAC
261 AAATAAGACAAAC
125083 GAGAATTGTC
Statistics
Matches: 539, Mismatches: 18, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
284 539 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (284 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTA
Found at i:125292 original size:760 final size:760
Alignment explanation
Indices: 124526--126872 Score: 4248
Period size: 760 Copynumber: 3.1 Consensus size: 760
124516 AGCATGACTA
**
124526 TAAACACATTCTCCTCATTAGGATAAACGATATTCATGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
124591 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
124656 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
124721 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
124786 AAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATT
261 AAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATT
124851 TTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTA
326 TTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTA
* * *
124916 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTTGAGATTGGGAGCTAAGATCACGTTCC
391 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
124981 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
456 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
125046 TCATAGAAGTAATGTTTGTCTCTTAAATAAAACAAACGAGAATTGTCATGCTAATCCCCATTCTT
521 TCATAGAAGTAATGTTTGTCTCTTAAATAAAACAAACGAGAATTGTCATGCTAATCCCCATTCTT
125111 TTCATGATTAGGCACCACAAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTC
586 TTCATGATTAGGCACCACAAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTC
125176 GTAGGAAAGGCTTTCTTCTCACAAATTTTTGTAAAGTCTGAGTTCGTGCCTCAAATGAGACAAAC
651 GTAGGAAAGGCTTTCTTCTCACAAATTTTTGTAAAGTCTGAGTTCGTGCCTCAAATGAGACAAAC
125241 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACGG
716 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACGG
125286 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
125351 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
125416 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
*
125481 TGCTTTGGTTTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
125546 AAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATT
261 AAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATT
125611 TTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTA
326 TTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTA
125676 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
391 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
* *
125741 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTGTTTT
456 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
* * * ** *
125806 TTATAGAAGTAAAGTTTGTCTCATAAATATGACAAACAAGAATTGTCATGCTAATCCCCATTCTT
521 TCATAGAAGTAATGTTTGTCTCTTAAATAAAACAAACGAGAATTGTCATGCTAATCCCCATTCTT
* *
125871 TTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGG-ATACACGATATTGATTCTTTGGTTT
586 TTCATGATTAGGCACCACAAACTTTGTCTTCTCAT-AGGAATACACGATATTGATTCTTTGGTTT
* * * * *
125935 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAA
650 CGTAGGAAAGGCTTTCTTCTCACAAATTTTTGTAAAGTCTGAGTTCGTGCCTCAAATGAGACAAA
*
126000 CGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACGG
715 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACGG
126046 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
* *
126111 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACGTAAGA
66 TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
* *
126176 GGCTCAATGCTTTTCGAGATTGGGAGCTAA-ACACACATTCCCTTCATAAGGATACATGACATTG
131 GGCTCCATGCTTTTCGAGATTGGGAGCTAAGA-GCACATTCCCTTCATAAGGATACATGACATTG
* * * *
126240 ATGCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCATCGTTTTTGATAGATGTAAAGTTTGTCTCT
195 ATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCT
*
126305 TAAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGAT
260 TAAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGAT
* * * * *
126370 ATTCTTTTACATGGAAATCTTTTCTTTATGCTATTTTCCTTAATATCAAAATTCATCCTGTAACT
325 TTTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACT
* *
126435 ATGACAAGCTTCGATTCTCGTAAGACGCTCCATGCTTTTCGAGATTGGGAGTTAAGAACACATTC
390 ATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTC
* * *
126500 CCTTCATAAGCATACATGACATTGATGCTTTGGTTTTGCAAGAAAATGTTTTCTTTCCACCGTTT
455 CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
126565 TTCATAGAAGTAATGTTTGTCTCTTAAATAAAACAAACGAGAATTGTCATGCTAATCCCCATTCT
520 TTCATAGAAGTAATGTTTGTCTCTTAAATAAAACAAACGAGAATTGTCATGCTAATCCCCATTCT
126630 TTTCATGATTAGGCACCACAAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTT
585 TTTCATGATTAGGCACCACAAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTT
126695 CGTAGGAAAGGCTTTCTTCTCACAAATTTTTGTAAAGTCTGAGTTCGTGCCTCAAATGAGACAAA
650 CGTAGGAAAGGCTTTCTTCTCACAAATTTTTGTAAAGTCTGAGTTCGTGCCTCAAATGAGACAAA
* * **
126760 CGAGGATTCTAGTCATGATCTTCATTTTTTTTGTGATTAGGGACTA
715 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACGG
*
126806 TAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
126871 TT
66 TT
126873 CCGCTGTTTT
Statistics
Matches: 1521, Mismatches: 63, Indels: 6
0.96 0.04 0.00
Matches are distributed among these distances:
759 4 0.00
760 1514 1.00
761 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (760 bp):
TAAACACATTCTCCTCATTAGGATAAACGATATTCACAATTTTCTTTTGCATGGAAATCTTTTCT
TTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTATGTCAAGCTTCGATTCACGCAAGA
GGCTCCATGCTTTTCGAGATTGGGAGCTAAGAGCACATTCCCTTCATAAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTCTGATAGAAGTAAAGTTTGTCTCTT
AAATAAGACAAACAAGCATGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCATGATT
TTCTTTTGCATGGAAATCTTTTCTTTACGCTATTTTCCTTATTATCAAAATTCATCCCGTAACTA
TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
TCATAGAAGTAATGTTTGTCTCTTAAATAAAACAAACGAGAATTGTCATGCTAATCCCCATTCTT
TTCATGATTAGGCACCACAAACTTTGTCTTCTCATAGGAATACACGATATTGATTCTTTGGTTTC
GTAGGAAAGGCTTTCTTCTCACAAATTTTTGTAAAGTCTGAGTTCGTGCCTCAAATGAGACAAAC
GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACGG
Done.