Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold123
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1422801
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 1358 characters in sequence are not A, C, G, or T
File 5 of 9
Found at i:722167 original size:24 final size:22
Alignment explanation
Indices: 722101--722172 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 22
722091 TCGGTTTATT
*
722101 TAATATAAAATAATTAAATAAAA
1 TAATATAAAATAA-AAAATAAAA
722124 TATATATAAAATAATAAAATATATAA
1 TA-ATATAAAATAA-AAAATA-A-AA
*
722150 TAATAT-AAATAAACAAATTAAA
1 TAATATAAAATAAA-AAATAAAA
722172 T
1 T
722173 CCCATCGAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
22 3 0.07
23 4 0.09
24 27 0.63
25 5 0.12
26 4 0.09
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (22 bp):
TAATATAAAATAAAAAATAAAA
Found at i:735326 original size:21 final size:21
Alignment explanation
Indices: 735302--735348 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
735292 TTTAATGCTG
735302 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
735322 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
735343 ATTTTG
1 ATTTTG
735349 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:735487 original size:13 final size:13
Alignment explanation
Indices: 735469--735507 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
735459 ATAATCACCC
*
735469 TGTATCGATACAG
1 TGTATCGATACAA
735482 TGTATCGATACAA
1 TGTATCGATACAA
735495 TGTATCGATACAA
1 TGTATCGATACAA
735508 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:735518 original size:20 final size:20
Alignment explanation
Indices: 735493--735571 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
735483 GTATCGATAC
735493 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
735513 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
735538 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
735558 CATGTATCGATACA
1 AATGTATCGATACA
735572 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:737607 original size:15 final size:15
Alignment explanation
Indices: 737587--737617 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
737577 ATTTCGTTTG
*
737587 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
737602 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
737617 G
1 G
737618 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:739448 original size:21 final size:21
Alignment explanation
Indices: 739419--739463 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
739409 AAGTTTTCAT
*
739419 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
739439 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
739461 TTT
1 TTT
739464 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:741699 original size:13 final size:13
Alignment explanation
Indices: 741681--741706 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
741671 CAATTTTTTG
741681 TGTATCGATACAT
1 TGTATCGATACAT
741694 TGTATCGATACAT
1 TGTATCGATACAT
741707 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:744068 original size:33 final size:33
Alignment explanation
Indices: 744026--744089 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 33
744016 CATGAAAATG
744026 TATCGATACATA-TTGCAATGTATCAATACATTA
1 TATCGATACA-ACTTGCAATGTATCAATACATTA
*
744059 TATCGATACAACTTGCAATGTATCGATACAT
1 TATCGATACAACTTGCAATGTATCAATACAT
744090 CTTGTGAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 1 0.03
33 28 0.97
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (33 bp):
TATCGATACAACTTGCAATGTATCAATACATTA
Found at i:744093 original size:20 final size:20
Alignment explanation
Indices: 744022--744103 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 20
744012 TACACATGAA
*
744022 AATGTATCGATACATATTGC
1 AATGTATCGATACATCTTGC
*
744042 AATGTATCAATACA--TT--
1 AATGTATCGATACATCTTGC
*
744058 -A--TATCGATACAACTTGC
1 AATGTATCGATACATCTTGC
*
744075 AATGTATCGATACATCTTGTG
1 AATGTATCGATACATCTTG-C
744096 AATGTATC
1 AATGTATC
744104 TGTACAAGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
13 9 0.18
15 3 0.06
18 3 0.06
20 27 0.54
21 8 0.16
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATCTTGC
Found at i:744182 original size:21 final size:22
Alignment explanation
Indices: 744131--744191 Score: 83
Period size: 21 Copynumber: 2.9 Consensus size: 22
744121 GTAGCTGCCC
744131 TTCA-AATGTATCGATACACAT
1 TTCAGAATGTATCGATACACAT
*
744152 AT-AGGAATGTATCGATACA-AT
1 TTCA-GAATGTATCGATACACAT
744173 TTCAGAATGTATCGATACA
1 TTCAGAATGTATCGATACA
744192 TCCATAATTG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 1 0.03
21 19 0.54
22 15 0.43
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (22 bp):
TTCAGAATGTATCGATACACAT
Found at i:749288 original size:21 final size:20
Alignment explanation
Indices: 749241--749294 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
749231 CATTTGAGAC
*
749241 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTA
*
749261 ATGTATCAATACATTCACTA
1 ATGTATCGATACATTCACTA
749281 ATTGTATCGATACA
1 A-TGTATCGATACA
749295 AATCGTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTCACTA
Found at i:750071 original size:61 final size:61
Alignment explanation
Indices: 750006--750127 Score: 156
Period size: 61 Copynumber: 2.0 Consensus size: 61
749996 TTAAGGATGC
* * *
750006 GAAGAATGATAATGGTG-TCAATATACTGATTCACGGCCAACGATATCGGGCTTAAAAATGA
1 GAAGAATGATAAAGGTGCT-AATATACTAATTCAAGGCCAACGATATCGGGCTTAAAAATGA
* * * * *
750067 GAAGAATGATAAAGGTGCTAATATGCTAATTTAAGGCTAGCGATATTGGGCTTAAAAATGA
1 GAAGAATGATAAAGGTGCTAATATACTAATTCAAGGCCAACGATATCGGGCTTAAAAATGA
750128 CAAAGGTGCT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 51 0.98
62 1 0.02
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (61 bp):
GAAGAATGATAAAGGTGCTAATATACTAATTCAAGGCCAACGATATCGGGCTTAAAAATGA
Found at i:750224 original size:61 final size:61
Alignment explanation
Indices: 750123--750271 Score: 237
Period size: 61 Copynumber: 2.4 Consensus size: 61
750113 TGGGCTTAAA
* *
750123 AATGACAAAGGTG-CTAATATGCTGATTCAAGGCTAGCAACATTAGACTTTAAGATGAGAAG
1 AATGATAAAGGTGTC-AATATGCTGATTCAAGGCTAGCAACATTAGACTTGAAGATGAGAAG
* *
750184 GATGATAAAGGTGTCAATATGCTGATTCAAGGCTAGCAACATTGGACTTGAAGATGAGAAG
1 AATGATAAAGGTGTCAATATGCTGATTCAAGGCTAGCAACATTAGACTTGAAGATGAGAAG
*
750245 AATGATAAAGGTGTCGATATGCTGATT
1 AATGATAAAGGTGTCAATATGCTGATT
750272 TAAGAATAGC
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
61 80 0.99
62 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (61 bp):
AATGATAAAGGTGTCAATATGCTGATTCAAGGCTAGCAACATTAGACTTGAAGATGAGAAG
Found at i:750267 original size:174 final size:174
Alignment explanation
Indices: 749950--750332 Score: 484
Period size: 174 Copynumber: 2.2 Consensus size: 174
749940 GATGATATGG
* * * * *
749950 ATGA-AAAGAGTGCCAATATGGTAATTCAAGGTTAGTAACGTTAGACTTAAGGATGCGAAGAATG
1 ATGACAAAG-GTGCCAATATGCTAATTCAAGGCTAGCAACATTAGACTTAAGGATGAGAAGAATG
* * * * *
750014 ATAATGGTGTCAATATACTGATTCACGGCCAACGATATCGGGCTTAAAAATGAGAAGAATGATAA
65 ATAAAGGTGTCAATATACTGATTCAAGGCCAACAACATCGGACTTAAAAATGAGAAGAATGATAA
** *
750079 AGGTGCTAATATGCTAATTTAAGGCTAGCGATATTGGGCTTAAAA
130 AGGTGCTAATATGCTAATTTAAGAATAGCGATATTAGGCTTAAAA
* * *
750124 ATGACAAAGGTGCTAATATGCTGATTCAAGGCTAGCAACATTAGACTTTAA-GATGAGAAGGATG
1 ATGACAAAGGTGCCAATATGCTAATTCAAGGCTAGCAACATTAGAC-TTAAGGATGAGAAGAATG
* * * * * *
750188 ATAAAGGTGTCAATATGCTGATTCAAGGCTAGCAACATTGGACTTGAAGATGAGAAGAATGATAA
65 ATAAAGGTGTCAATATACTGATTCAAGGCCAACAACATCGGACTTAAAAATGAGAAGAATGATAA
* * *
750253 AGGTG-TCGATATGCTGATTTAAGAATAGCGATATTAGGCTTAAAG
130 AGGTGCT-AATATGCTAATTTAAGAATAGCGATATTAGGCTTAAAA
*
750298 ATGACAAAGGTGCCAATTTGCTAATTCAAGGCTAG
1 ATGACAAAGGTGCCAATATGCTAATTCAAGGCTAG
750333 TGATATTGGA
Statistics
Matches: 178, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
173 1 0.01
174 169 0.95
175 8 0.04
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (174 bp):
ATGACAAAGGTGCCAATATGCTAATTCAAGGCTAGCAACATTAGACTTAAGGATGAGAAGAATGA
TAAAGGTGTCAATATACTGATTCAAGGCCAACAACATCGGACTTAAAAATGAGAAGAATGATAAA
GGTGCTAATATGCTAATTTAAGAATAGCGATATTAGGCTTAAAA
Found at i:750299 original size:61 final size:61
Alignment explanation
Indices: 750123--750301 Score: 227
Period size: 61 Copynumber: 2.9 Consensus size: 61
750113 TGGGCTTAAA
* * *
750123 AATGACAAAGGTG-CTAATATGCTGATTCAAGGCTAGCAACATTAGACTTTAAGATGAGAAG
1 AATGATAAAGGTGTC-AATATGCTGATTCAAGGCTAGCAACATTAGGCTTAAAGATGAGAAG
* *
750184 GATGATAAAGGTGTCAATATGCTGATTCAAGGCTAGCAACATT-GGACTTGAAGATGAGAAG
1 AATGATAAAGGTGTCAATATGCTGATTCAAGGCTAGCAACATTAGG-CTTAAAGATGAGAAG
* * ** * *
750245 AATGATAAAGGTGTCGATATGCTGATTTAAGAATAGCGATATTAGGCTTAAAGATGA
1 AATGATAAAGGTGTCAATATGCTGATTCAAGGCTAGCAACATTAGGCTTAAAGATGA
750302 CAAAGGTGCC
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
60 1 0.01
61 99 0.96
62 3 0.03
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (61 bp):
AATGATAAAGGTGTCAATATGCTGATTCAAGGCTAGCAACATTAGGCTTAAAGATGAGAAG
Found at i:750546 original size:33 final size:33
Alignment explanation
Indices: 750475--751166 Score: 582
Period size: 33 Copynumber: 21.5 Consensus size: 33
750465 GATGCCACTT
* * * **
750475 ACTTGTGTAGGCTTTTG-AGAGGGTTACCATTG
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* * *
750507 ATTTGTGTGGGCTTTTGAAGAGGGTTGCCACCA
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* * *
750540 ACTTGTGTGGGCTTTAGAAAAGGGTTGTCACTG
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* * * *
750573 ACTTGTGTAGGCTTTAGAAAAGGGTTGTCACTG
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* * **
750606 ACTTGTGTAGGCTTTAG-AGAAGGGTCGCCACAA
1 ACTTGTGTGGGCTTTAGAAG-AGGGTTGCCACCG
* *
750639 ACTTGTGTGGGCTTTAGAAAAGGGTTGTCACCG
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
750672 ACTTGTGTGGGCTTTAG-AGAAGGGTTGCCACCG
1 ACTTGTGTGGGCTTTAGAAG-AGGGTTGCCACCG
* * * *
750705 ACTTATGTAGGCTTTTG-AGAGGGTTGCCATCG
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
*
750737 ACTTGTGTGGGCTTTA-AAGAAGGATTGCCACCG
1 ACTTGTGTGGGCTTTAGAAG-AGGGTTGCCACCG
* *
750770 ACTTGTGTGGGCTTTAG-A-AGGGTTACCACCA
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* * * **
750801 ACTCGTGTGGGCTTTAG-AGAAGGGTTACTATAG
1 ACTTGTGTGGGCTTTAGAAG-AGGGTTGCCACCG
* *
750834 GCTTGTGTGGGCTTTTG-AGAGGGTTGCCACCG
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* *
750866 ACTTATGTGGGCTTTAG-AGAAGGGTTGCGACCG
1 ACTTGTGTGGGCTTTAGAAG-AGGGTTGCCACCG
* * *
750899 ACTTGTGTGGGCTTTAG-A-AGGATTTCCACCA
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
**
750930 ACTTGTGTGGGCTTTAGAAGA-GGTTGCCACTA
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* * ** *
750962 ACTTCTATGGGCTTTA-AA-AATGTTGCCACTG
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* * *** **
750993 ACTTCTGTGGGCTTTA-AAAAACATTGCCACTA
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* *
751025 ACTTGTATGGGCTTTA-AA-AGGGTTGCCATCG
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
** * * *
751056 ACTTGTGCAGGCTTTAGAATA-GGTTACCACCA
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
*
751088 ACTTGTGTGGGCTTTAGAAGA-GGTTGCCACCA
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
* * * *
751120 ACTTGTGTGGGCTTTAG--TAGGGTTGCTATCA
1 ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
*
751151 ACTTGTATGGGCTTTA
1 ACTTGTGTGGGCTTTA
751167 AAGGGTGCCA
Statistics
Matches: 551, Mismatches: 92, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
30 2 0.00
31 125 0.23
32 173 0.31
33 250 0.45
34 1 0.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (33 bp):
ACTTGTGTGGGCTTTAGAAGAGGGTTGCCACCG
Found at i:750861 original size:129 final size:129
Alignment explanation
Indices: 750509--751177 Score: 605
Period size: 129 Copynumber: 5.2 Consensus size: 129
750499 TACCATTGAT
* * **
750509 TTGTGTGGGCTTTTGAAGAGGGTTGCCACCAACTTGTGTGGGCTTTAGAAAAGGGTTGTCACT-G
1 TTGTGTGGGCTTTAG-A-AGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTACCACTAG
* * * * * * * *
750573 ACTTGTGTAGGCTTTAGAAAAGGGTTGTCACTGACTTGTGTAGGCTTTAGAGAAGGGTCGCCACA
64 ACTTGTGTGGGCTTTTG-AAAGGGTTGCCAC-GACTTGTGTGGGCTTTAAAGAAGGATTGCCACC
750638 AAC
127 AAC
* * * *
750641 TTGTGTGGGCTTTAGAAAAGGGTTGTCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCAC-CG
1 TTGTGTGGGCTTTAG--AAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTACCACTAG
* * * *
750705 ACTTATGTAGGCTTTTGAGAGGGTTGCCATCGACTTGTGTGGGCTTTAAAGAAGGATTGCCACCG
64 ACTTGTGTGGGCTTTTGAAAGGGTTGCCA-CGACTTGTGTGGGCTTTAAAGAAGGATTGCCACCA
750770 AC
128 AC
* * * *
750772 TTGTGTGGGCTTTAGAAGGGTTACCACCAACTCGTGTGGGCTTTAGAGAAGGGTTACTA-TAGGC
1 TTGTGTGGGCTTTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTACCACTAGAC
* * * * * *
750836 TTGTGTGGGCTTTTGAGAGGGTTGCCACCGACTTATGTGGGCTTTAGAGAAGGGTTGCGACCGAC
66 TTGTGTGGGCTTTTGAAAGGGTTGCCA-CGACTTGTGTGGGCTTTAAAGAAGGATTGCCACCAAC
* * *
750901 TTGTGTGGGCTTTAGAAGGATTTCCACCAACTTGTGTGGGCTTT--AGAAGAGGTTGCCACTA-A
1 TTGTGTGGGCTTTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAG-GGTTACCACTAGA
* * * ** * ** *
750963 CTTCTATGGGC-TTTAAAAATGTTGCCACTGACTTCTGTGGGCTTTAAA-AAACATTGCCACTAA
65 CTTGTGTGGGCTTTTGAAAGGGTTGCCAC-GACTTGTGTGGGCTTTAAAGAAGGATTGCCACCAA
751026 C
129 C
* * * * ** *
751027 TTGTATGGGCTTTAAAAGGGTTGCCATCGACTTGTGCAGGCTTTAGA-ATA-GGTTACCACCA-A
1 TTGTGTGGGCTTTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGA-AGGGTTACCACTAGA
* * * * * *
751089 CTTGTGTGGGCTTTAG-AAGAGGTTGCCACCAACTTGTGTGGGCTTT--AGTAGGGTTGCTATCA
65 CTTGTGTGGGCTTTTGAAAG-GGTTGCCA-CGACTTGTGTGGGCTTTAAAGAAGGATTGCCACCA
751151 AC
128 AC
*
751153 TTGTATGGGCTTTA-AAGGG-TGCCAC
1 TTGTGTGGGCTTTAGAAGGGTTGCCAC
751178 AGAGTTATGG
Statistics
Matches: 447, Mismatches: 76, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
124 5 0.01
125 6 0.01
126 91 0.20
127 58 0.13
128 18 0.04
129 141 0.32
131 55 0.12
132 71 0.16
133 2 0.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (129 bp):
TTGTGTGGGCTTTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTACCACTAGAC
TTGTGTGGGCTTTTGAAAGGGTTGCCACGACTTGTGTGGGCTTTAAAGAAGGATTGCCACCAAC
Found at i:751002 original size:63 final size:63
Alignment explanation
Indices: 750529--751168 Score: 443
Period size: 63 Copynumber: 10.0 Consensus size: 63
750519 TTTTGAAGAG
* * * * * *
750529 GGTTGCCACCAACTTGTGTGGGCTTTAGAAAAGGGTTGTCACTGACTTGTGTAGGCTTTAGAAAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAAGA-GGTTGCCACTAACTTGTATGGGCTTTA-AAAA
* * * * * *
750594 GGGTTGTCACTGACTTGTGTAGGCTTTAG-AGAAGGGTCGCCACAAACTTGTGTGGGCTTTAGAA
1 -GGTTGCCACCGACTTGTGTGGGCTTTAGAAG-A-GGTTGCCACTAACTTGTATGGGCTTTA-AA
750658 AA
62 AA
* ** * * * * *
750660 GGGTTGTCACCGACTTGTGTGGGCTTTAG-AGAAGGGTTGCCACCGACTTATGTAGGCTTTTGAG
1 -GGTTGCCACCGACTTGTGTGGGCTTTAGAAG-A-GGTTGCCACTAACTTGTATGGGC-TTTAAA
*
750724 AG
62 AA
* ** * * *
750726 GGTTGCCATCGACTTGTGTGGGCTTTA-AAGAAGGATTGCCACCGACTTGTGTGGGCTTTAGAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAAG-AGG-TTGCCACTAACTTGTATGGGCTTTAAAAA
* * * * * * * * *
750790 GGTTACCACCAACTCGTGTGGGCTTTAG-AGAAGGGTTACTA-TAGGCTTGTGTGGGCTTTTGAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAAG-A-GGTTGCCACTA-ACTTGTATGGGC-TTTAAA
*
750853 AG
62 AA
* * ** * *
750855 GGTTGCCACCGACTTATGTGGGCTTTAG-AGAAGGGTTGCGACCGACTTGTGTGGGCTTT-AGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAAG-A-GGTTGCCACTAACTTGTATGGGCTTTAAAAA
* * *
750918 GGATTTCCACCAACTTGTGTGGGCTTTAGAAGAGGTTGCCACTAACTTCTATGGGCTTTAAAAA
1 GG-TTGCCACCGACTTGTGTGGGCTTTAGAAGAGGTTGCCACTAACTTGTATGGGCTTTAAAAA
* * * * * ** *
750982 TGTTGCCACTGACTTCTGTGGGCTTTAAAAAACATTGCCACTAACTTGTATGGGCTTTAAAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAAGAGGTTGCCACTAACTTGTATGGGCTTTAAAAA
* ** * * * * *
751045 GGTTGCCATCGACTTGTGCAGGCTTTAGAATAGGTTACCACCAACTTGTGTGGGCTTTAGAAGA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAAGAGGTTGCCACTAACTTGTATGGGCTTTA-AAAA
* * *
751109 GGTTGCCACCAACTTGTGTGGGCTTTAGTAG-GGTTGCTA-TCAACTTGTATGGGCTTTAAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAAGAGGTTGCCACT-AACTTGTATGGGCTTTAAA
751169 GGGTGCCACA
Statistics
Matches: 466, Mismatches: 94, Indels: 32
0.79 0.16 0.05
Matches are distributed among these distances:
62 2 0.00
63 145 0.31
64 107 0.23
65 104 0.22
66 105 0.23
67 3 0.01
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (63 bp):
GGTTGCCACCGACTTGTGTGGGCTTTAGAAGAGGTTGCCACTAACTTGTATGGGCTTTAAAAA
Found at i:751303 original size:33 final size:33
Alignment explanation
Indices: 751241--751388 Score: 122
Period size: 34 Copynumber: 4.4 Consensus size: 33
751231 GGGTGCTATG
* *
751241 GAGTTGTGGACTTAAAAACAAAAAAGGTGCCACA
1 GAGTTATGGACTTAAAAA-GAAAAAGGTGCCACA
* *
751275 GAGTTGTGGACTTAAAAAGAAAAAGGTGCCA-T
1 GAGTTATGGACTTAAAAAGAAAAAGGTGCCACA
** *
751307 GAAGTTATAAACTTAAAAGGGAAAAAGGGTGCCACA
1 G-AGTTATGGACTTAAAA-AGAAAAA-GGTGCCACA
* * * **
751343 -AGTCATGGACTTAAAAGGGATAAA-GTGCCATG
1 GAGTTATGGACTTAAAA-AGAAAAAGGTGCCACA
751375 GAGTTATGGACTTA
1 GAGTTATGGACTTA
751389 CAATGGTGCC
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
32 7 0.07
33 37 0.39
34 44 0.46
35 7 0.07
ACGTcount: A:0.41, C:0.11, G:0.26, T:0.21
Consensus pattern (33 bp):
GAGTTATGGACTTAAAAAGAAAAAGGTGCCACA
Found at i:751388 original size:67 final size:67
Alignment explanation
Indices: 751232--751388 Score: 174
Period size: 67 Copynumber: 2.3 Consensus size: 67
751222 GATTTTAAAG
* * **
751232 GGTGCTATGGAGTTGTGGACTTAAAAACAAAAAAGGTGCCACAGAGTTGTGGACTTAAAAAGAAA
1 GGTGCCATGGAGTTATGGACTTAAAAACAAAAAAGGTGCCACAGAGTCATGGACTTAAAAAGAAA
751297 AA
66 AA
* ** ** * *
751299 GGTGCCATGAAGTTATAAACTTAAAAGGGAAAAAGGGTGCCACA-AGTCATGGACTTAAAAGGGA
1 GGTGCCATGGAGTTATGGACTTAAAA-ACAAAAAAGGTGCCACAGAGTCATGGACTTAAAA-AGA
*
751363 TAAA
64 AAAA
751367 -GTGCCATGGAGTTATGGACTTA
1 GGTGCCATGGAGTTATGGACTTA
751389 CAATGGTGCC
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
67 54 0.74
68 19 0.26
ACGTcount: A:0.39, C:0.11, G:0.27, T:0.22
Consensus pattern (67 bp):
GGTGCCATGGAGTTATGGACTTAAAAACAAAAAAGGTGCCACAGAGTCATGGACTTAAAAAGAAA
AA
Found at i:759387 original size:20 final size:21
Alignment explanation
Indices: 759348--759401 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
759338 TATATACATG
759348 TATCGATACA-TTGAAGAATA
1 TATCGATACATTTGAAGAATA
*
759368 TATCGATACATTTGGA-AATA
1 TATCGATACATTTGAAGAATA
*
759388 TATAGGATACATTT
1 TAT-CGATACATTT
759402 ACTTATGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (21 bp):
TATCGATACATTTGAAGAATA
Found at i:760282 original size:61 final size:61
Alignment explanation
Indices: 760176--760295 Score: 141
Period size: 61 Copynumber: 2.0 Consensus size: 61
760166 TTAGGGATGC
* * *
760176 GAAGAATGATAAAGGTGCCGATATGCTAATTCATGACCAGCGATATCGGGCTTGAAGATTT
1 GAAGAATGATAAAGGTGCCAATATGCTAATTCAAGACCAGCGATATCGGGCTTAAAGATTT
* * * *** * *
760237 GAAGCATGATAAAGGTGCCAATATGCTGATTTAAGGTTAGTGATATTGGGCTTAAAGAT
1 GAAGAATGATAAAGGTGCCAATATGCTAATTCAAGACCAGCGATATCGGGCTTAAAGAT
760296 GACAAAGGTA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (61 bp):
GAAGAATGATAAAGGTGCCAATATGCTAATTCAAGACCAGCGATATCGGGCTTAAAGATTT
Found at i:760337 original size:52 final size:52
Alignment explanation
Indices: 760242--760461 Score: 165
Period size: 52 Copynumber: 4.1 Consensus size: 52
760232 GATTTGAAGC
* * * ** * *
760242 ATGATAAAGGTGCCAATATGCTGATTTAAGGTTAGTGATATTGGGCTTAAAG
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCAACATTAGGCTTAAAG
* *
760294 ATGACAAAGGTACCAATATGATGATTCAAGGCTAGCAACATT-GGACTTGAAGTTGAAAAG
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCAACATTAGG-C------TT--AAAG
* * ** ** *
760354 AATGATAAAGGTTCTGATATGCTGATTCAAGG-TAGTGATATTAGGCTTAAAG
1 -ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCAACATTAGGCTTAAAG
* * *
760406 ATGACAAAGGTGCCAATATGCTAATTCAAGGCTAGCAACATTAGACTTGAAG
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCAACATTAGGCTTAAAG
760458 ATGA
1 ATGA
760462 GAAGAATAAT
Statistics
Matches: 130, Mismatches: 26, Indels: 24
0.72 0.14 0.13
Matches are distributed among these distances:
51 28 0.22
52 58 0.45
54 2 0.02
58 2 0.02
60 12 0.09
61 28 0.22
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (52 bp):
ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCAACATTAGGCTTAAAG
Found at i:760433 original size:112 final size:111
Alignment explanation
Indices: 760181--760567 Score: 391
Period size: 112 Copynumber: 3.4 Consensus size: 111
760171 GATGCGAAGA
* * * * * * * * *
760181 ATGATAAAGGTGCCGATATGCTAATTCATGACCAGCGATATCGGGCTTGAAGATTTG-AAGCATG
1 ATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGCAACATTGGACTTGAAG--TTGAAAGAATG
* ** *
760245 ATAAAGGTGCCAATATGCTGATTTAAGGTTAGTGATATTGGGCTTAAAG
64 ATAAAGGTACTGATATGCTGATTTAAGGCTAGTGATATT-GGCTTAAAG
* * * *
760294 ATGACAAAGGTACCAATATGATGATTCAAGGCTAGCAACATTGGACTTGAAGTTGAAAAGAATGA
1 ATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGCAACATTGGACTTGAAGTTG-AAAGAATGA
* *
760359 TAAAGGTTCTGATATGCTGATTCAAGG-TAGTGATATTAGGCTTAAAG
65 TAAAGGTACTGATATGCTGATTTAAGGCTAGTGATATT-GGCTTAAAG
* * * *
760406 ATGACAAAGGTGCCAATATGCTAATTCAAGGCTAGCAACATTAGACTTGAAGATGAGAAGAATAA
1 ATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGCAACATTGGACTTGAAGTTGA-AAGAATGA
* * * *
760471 TAAAGGTACTGATATGCTAATTTAAGGCCAATGATATTGGACTTAATG
65 TAAAGGTACTGATATGCTGATTTAAGGCTAGTGATATTGG-CTTAAAG
* * * * * *
760519 AAAGAAAAAGGTGCCAATCTGCTGATTCAAGGCCAACGACATTGGACTT
1 -ATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGCAACATTGGACTT
760568 AGAAAGAAAT
Statistics
Matches: 230, Mismatches: 38, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
111 4 0.02
112 102 0.44
113 84 0.37
114 40 0.17
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (111 bp):
ATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGCAACATTGGACTTGAAGTTGAAAGAATGAT
AAAGGTACTGATATGCTGATTTAAGGCTAGTGATATTGGCTTAAAG
Found at i:760679 original size:32 final size:32
Alignment explanation
Indices: 760620--761196 Score: 488
Period size: 33 Copynumber: 17.9 Consensus size: 32
760610 CTAACGACAT
* *
760620 TGGGC-TTAGA-AGGAGATGCCACTGACTTGTG
1 TGGGCTTTAGAGAGG-GTTGCCACCGACTTGTG
*
760651 TGGGCTTTTGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
** * *
760683 TGGGCTTTTTTAGAAGGTTGCCACCAACTTGTG
1 TGGGC-TTTAGAGAGGGTTGCCACCGACTTGTG
* * * * *
760716 TAGGCTTTAGAAAGGGGTTGTCACCAACTTATG
1 TGGGCTTTAGAGA-GGGTTGCCACCGACTTGTG
* * *
760749 TGTGTTTTAGAGAAGGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTG
* * * *
760782 TGGGCCTTAAAGAGGGTTGCCATCGACTTATG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
760814 TGAGCTATT-GAGAGGGTTGCCACCGACTTGTG
1 TGGGCT-TTAGAGAGGGTTGCCACCGACTTGTG
* *
760846 TAGGCTTTAGAAAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAG-AGAGGGTTGCCACCGACTTGTG
** * *
760879 CAGGCTTTAAAAAAGGGTTGCCACCGACTTGTG
1 TGGGCTTT-AGAGAGGGTTGCCACCGACTTGTG
* * ** * * *
760912 TGTGCTTTTAGAGAAGACTACCACTGACTTATG
1 TGGGC-TTTAGAGAGGGTTGCCACCGACTTGTG
* * **
760945 TAGGCTTTAAAAGAGGGTTGCCACTAACTTGTG
1 TGGGCTTT-AGAGAGGGTTGCCACCGACTTGTG
* * * * *
760978 CGGGCTTTTGATAGGGTTGCTACTGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
* *
761010 TGGGCTTTTAGA-AGAGGTTGCCCCCGACTTGTA
1 TGGGC-TTTAGAGAG-GGTTGCCACCGACTTGTG
* *
761043 TGGGCTTTAGA-AGAGGTTGCCACTGACTTCTG
1 TGGGCTTTAGAGAG-GGTTGCCACCGACTTGTG
* *
761075 TGGGCTTTA-AAAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
761106 TGAGCTTTAGA-AGTGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAG-GGTTGCCACCGACTTGTG
* * *
761138 TGGGCATTAGA-AGGGTTGCCACCAACTTGCG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
* *
761169 TGGGCTTTAGA-AGGGATGCCATCGACTT
1 TGGGCTTTAGAGAGGGTTGCCACCGACTT
761197 CTGTAGGGTT
Statistics
Matches: 444, Mismatches: 86, Indels: 32
0.79 0.15 0.06
Matches are distributed among these distances:
31 73 0.16
32 166 0.37
33 200 0.45
34 5 0.01
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (32 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
Found at i:761321 original size:61 final size:62
Alignment explanation
Indices: 761212--761401 Score: 188
Period size: 61 Copynumber: 3.0 Consensus size: 62
761202 GGGTTTAAGG
** * *
761212 GGTGCCATGGAGTTATGGACTTAAAAAGGAGAAGGATGCCATTG-AGTTGTGGACTTTAAAG-
1 GGTGCCACAGAGTTATGGACTTAAAAAGGAAAAGGGTGCCA-TGAAGTTGTGGACTTTAAAGA
* * * *
761273 TGTGCCACAGAGTTATGGACTTAAAAAGAAAAAGGGTGCGATGAAGTTGTGGA-TATAAAAAGAA
1 GGTGCCACAGAGTTATGGACTTAAAAAGGAAAAGGGTGCCATGAAGTTGTGGACT-T-TAAAG--
761337 AAA
62 --A
* * *
761340 GGTGCCACAAAGTTGTGGACTTAAAAAGGAAAAGGAGTGCCATGAAGTCGTGGACTTTAAAG
1 GGTGCCACAGAGTTATGGACTTAAAAAGGAAAAGG-GTGCCATGAAGTTGTGGACTTTAAAG
761402 GGATAAAGTG
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
60 3 0.03
61 44 0.42
62 4 0.04
67 35 0.34
68 17 0.16
69 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.30, T:0.23
Consensus pattern (62 bp):
GGTGCCACAGAGTTATGGACTTAAAAAGGAAAAGGGTGCCATGAAGTTGTGGACTTTAAAGA
Found at i:761353 original size:33 final size:33
Alignment explanation
Indices: 761269--761430 Score: 139
Period size: 33 Copynumber: 4.8 Consensus size: 33
761259 TGTGGACTTT
* *
761269 AAAGTGTGCCACAGAGTTATGGACTTAAAAAGAA
1 AAAG-GTGCCACAAAGTTGTGGACTTAAAAAGAA
* **
761303 AAAGGGTGCGATGAAGTTGTGGA-TATAAAAAGAA
1 AAA-GGTGCCACAAAGTTGTGGACT-TAAAAAGAA
761337 AAAGGTGCCACAAAGTTGTGGACTTAAAAAGGAA
1 AAAGGTGCCACAAAGTTGTGGACTTAAAAA-GAA
* ** * ** *
761371 AAGGAGTGCCATGAAGTCGTGGACTTTAAAGGGAT
1 AAAG-GTGCCACAAAGTTGTGGAC-TTAAAAAGAA
*
761406 AAA-GTGCCACAGAGTTGTGGACTTA
1 AAAGGTGCCACAAAGTTGTGGACTTA
761431 CAATGGTGCC
Statistics
Matches: 102, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
32 3 0.03
33 38 0.37
34 35 0.34
35 21 0.21
36 5 0.05
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.21
Consensus pattern (33 bp):
AAAGGTGCCACAAAGTTGTGGACTTAAAAAGAA
Found at i:761414 original size:68 final size:67
Alignment explanation
Indices: 761269--761430 Score: 209
Period size: 68 Copynumber: 2.4 Consensus size: 67
761259 TGTGGACTTT
* * *
761269 AAAGTGTGCCACAGAGTTATGGACTTAAAAAGAAAAAGGGTGCGATGAAGTTGTGGATATAAAAA
1 AAAG-GTGCCACAGAGTTGTGGACTTAAAAAGAAAAAGGGTGCCATGAAGTCGTGGATATAAAAA
761334 GAA
65 GAA
* * * *
761337 AAAGGTGCCACAAAGTTGTGGACTTAAAAAGGAAAAGGAGTGCCATGAAGTCGTGGACTTTAAAG
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAAGAAAAAGG-GTGCCATGAAGTCGTGGA-TATAAAA
* *
761402 GGAT
64 AGAA
761406 AAA-GTGCCACAGAGTTGTGGACTTA
1 AAAGGTGCCACAGAGTTGTGGACTTA
761431 CAATGGTGCC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
67 31 0.38
68 41 0.50
69 10 0.12
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.21
Consensus pattern (67 bp):
AAAGGTGCCACAGAGTTGTGGACTTAAAAAGAAAAAGGGTGCCATGAAGTCGTGGATATAAAAAG
AA
Found at i:768341 original size:335 final size:335
Alignment explanation
Indices: 767731--768401 Score: 1306
Period size: 335 Copynumber: 2.0 Consensus size: 335
767721 TTTAGGATTT
*
767731 TAAAATGATTTTTTAACATGAAACAATGATGCTGCCAACAGGAAACAGAGCAAAACAGGGGGCTA
1 TAAAATGATTTTTTAACATGAAACAATGATGCTGCCAACAGGAAACAAAGCAAAACAGGGGGCTA
767796 GTTTTAGTTTCCTATATGTTTACAAATCTAAACTCGAGCTACGGACATCTAAACTTCCGCGACAG
66 GTTTTAGTTTCCTATATGTTTACAAATCTAAACTCGAGCTACGGACATCTAAACTTCCGCGACAG
*
767861 AGACCAAAGAGTGGTATGAGCATCACAAACTCATTTACACAATCCTGGAGTAGTTTGGGATGATG
131 AGACAAAAGAGTGGTATGAGCATCACAAACTCATTTACACAATCCTGGAGTAGTTTGGGATGATG
*
767926 AAACAGCCCGTTGATCATACCATTCAAGGTTTTGACACAAAACCAAAGCACAAACATTTTATGGA
196 AAACAGCCCGTTGATCATACCATTCAAGGTTTAGACACAAAACCAAAGCACAAACATTTTATGGA
767991 CAAGTAAGACCATTTTGGCTTGAAAATCCGAATTTTGGACTTGTTTTAATCATGACTCCAAACCT
261 CAAGTAAGACCATTTTGGCTTGAAAATCCGAATTTTGGACTTGTTTTAATCATGACTCCAAACCT
768056 AGAAATTAAA
326 AGAAATTAAA
768066 TAAAATGATTTTTTAACATGAAACAATGATGCTGCCAACAGGAAACAAAGCAAAACAGGGGGCTA
1 TAAAATGATTTTTTAACATGAAACAATGATGCTGCCAACAGGAAACAAAGCAAAACAGGGGGCTA
768131 GTTTTAGTTTCCTATATGTTTACAAATCTAAACTCGAGCTACGGACATCTAAACTTCCGCGACAG
66 GTTTTAGTTTCCTATATGTTTACAAATCTAAACTCGAGCTACGGACATCTAAACTTCCGCGACAG
*
768196 AGAGAAAAGAGTGGTATGAGCATCACAAACTCATTTACACAATCCTGGAGTAGTTTGGGATGATG
131 AGACAAAAGAGTGGTATGAGCATCACAAACTCATTTACACAATCCTGGAGTAGTTTGGGATGATG
768261 AAACAGCCCGTTGATCATACCATTCAAGGTTTAGACACAAAACCAAAGCACAAACATTTTATGGA
196 AAACAGCCCGTTGATCATACCATTCAAGGTTTAGACACAAAACCAAAGCACAAACATTTTATGGA
768326 CAAGTAAGACCATTTTGGCTTGAAAATCCGAATTTTGGACTTGTTTTAATCATGACTCCAAACCT
261 CAAGTAAGACCATTTTGGCTTGAAAATCCGAATTTTGGACTTGTTTTAATCATGACTCCAAACCT
768391 AGAAATTAAA
326 AGAAATTAAA
768401 T
1 T
768402 TTACGCAAGA
Statistics
Matches: 332, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
335 332 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (335 bp):
TAAAATGATTTTTTAACATGAAACAATGATGCTGCCAACAGGAAACAAAGCAAAACAGGGGGCTA
GTTTTAGTTTCCTATATGTTTACAAATCTAAACTCGAGCTACGGACATCTAAACTTCCGCGACAG
AGACAAAAGAGTGGTATGAGCATCACAAACTCATTTACACAATCCTGGAGTAGTTTGGGATGATG
AAACAGCCCGTTGATCATACCATTCAAGGTTTAGACACAAAACCAAAGCACAAACATTTTATGGA
CAAGTAAGACCATTTTGGCTTGAAAATCCGAATTTTGGACTTGTTTTAATCATGACTCCAAACCT
AGAAATTAAA
Found at i:777444 original size:51 final size:51
Alignment explanation
Indices: 777368--777469 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
777358 CATTTTATTA
777368 GTGCATCTAAAAGTGTGTGAGAATGCACAATAGAGACAGAATATGATAGGT
1 GTGCATCTAAAAGTGTGTGAGAATGCACAATAGAGACAGAATATGATAGGT
*
777419 GTGCATCTAAAAGTGTGTGAGAATGCACAATAGAGATAGAATATGATAGGT
1 GTGCATCTAAAAGTGTGTGAGAATGCACAATAGAGACAGAATATGATAGGT
777470 ATATGATAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.39, C:0.09, G:0.27, T:0.25
Consensus pattern (51 bp):
GTGCATCTAAAAGTGTGTGAGAATGCACAATAGAGACAGAATATGATAGGT
Found at i:779809 original size:13 final size:13
Alignment explanation
Indices: 779791--779815 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
779781 ATATTGCTTA
779791 GTATCGATACATT
1 GTATCGATACATT
779804 GTATCGATACAT
1 GTATCGATACAT
779816 GTTCATCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:788016 original size:20 final size:20
Alignment explanation
Indices: 787991--788066 Score: 100
Period size: 20 Copynumber: 3.7 Consensus size: 20
787981 CACTATTCAT
787991 GTATCGATACATTGTGAATA
1 GTATCGATACATTGTGAATA
* *
788011 GTATCGATGCATCACTGTTAAT-
1 GTATCGAT--A-CATTGTGAATA
788033 GTATCGATACATTGTGAATA
1 GTATCGATACATTGTGAATA
788053 GTATCGATACATTG
1 GTATCGATACATTG
788067 AGTCCAACGA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
19 8 0.17
20 23 0.48
22 9 0.19
23 8 0.17
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.36
Consensus pattern (20 bp):
GTATCGATACATTGTGAATA
Found at i:788037 original size:42 final size:42
Alignment explanation
Indices: 787978--788060 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
787968 TTTCACTGTT
*
787978 CATCACTATTCATGTATCGATACATTGTGAATAGTATCGATG
1 CATCACTATTAATGTATCGATACATTGTGAATAGTATCGATG
*
788020 CATCACTGTTAATGTATCGATACATTGTGAATAGTATCGAT
1 CATCACTATTAATGTATCGATACATTGTGAATAGTATCGAT
788061 ACATTGAGTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (42 bp):
CATCACTATTAATGTATCGATACATTGTGAATAGTATCGATG
Found at i:788039 original size:22 final size:21
Alignment explanation
Indices: 787977--788040 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 21
787967 TTTTCACTGT
* *
787977 TCATCACTATTCATGTATCGA
1 TCATCACTGTTAATGTATCGA
* *
787998 T-A-CATTGTGAATAGTATCGA
1 TCATCACTGTTAAT-GTATCGA
788018 TGCATCACTGTTAATGTATCGA
1 T-CATCACTGTTAATGTATCGA
788040 T
1 T
788041 ACATTGTGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
19 6 0.18
20 9 0.27
21 1 0.03
22 9 0.27
23 8 0.24
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (21 bp):
TCATCACTGTTAATGTATCGA
Found at i:792218 original size:21 final size:21
Alignment explanation
Indices: 792185--792229 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
792175 TTGCAAGTTG
*
792185 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
792207 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
792227 AAA
1 AAA
792230 ATGAACACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:794053 original size:15 final size:15
Alignment explanation
Indices: 794033--794063 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
794023 TAAAAATGTC
*
794033 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
794048 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
794063 C
1 C
794064 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:796158 original size:20 final size:20
Alignment explanation
Indices: 796080--796191 Score: 94
Period size: 20 Copynumber: 5.7 Consensus size: 20
796070 ATGTCCAAAA
* *
796080 TGTATCGATACATGTTTCTG
1 TGTATCGATACATTTTTCTT
* *
796100 TGTATCGATACATCTGGAAATTCTA
1 TGTATCGATACAT-T----TTTCTT
796125 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
796145 TGTATCGATACA-------T
1 TGTATCGATACATTTTTCTT
796158 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
796178 TGTATCGATACATT
1 TGTATCGATACATT
796192 GTATCGATAC
Statistics
Matches: 75, Mismatches: 5, Indels: 24
0.72 0.05 0.23
Matches are distributed among these distances:
13 13 0.17
20 44 0.59
24 1 0.01
25 17 0.23
ACGTcount: A:0.25, C:0.15, G:0.14, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTTTTCTT
Found at i:796162 original size:13 final size:13
Alignment explanation
Indices: 796144--796215 Score: 84
Period size: 13 Copynumber: 6.0 Consensus size: 13
796134 ACATTTTTCT
796144 TTGTATCGATACA
1 TTGTATCGATACA
796157 TTGTATCGATACA
1 TTGTATCGATACA
*
796170 TT-T-T---T-CT
1 TTGTATCGATACA
796177 TTGTATCGATACA
1 TTGTATCGATACA
796190 TTGTATCGATACA
1 TTGTATCGATACA
*
796203 CTGTATCGATACA
1 TTGTATCGATACA
796216 GGGTGATTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
7 3 0.06
8 2 0.04
9 1 0.02
11 1 0.02
12 2 0.04
13 41 0.82
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:796167 original size:33 final size:33
Alignment explanation
Indices: 796125--796202 Score: 156
Period size: 33 Copynumber: 2.4 Consensus size: 33
796115 GGAAATTCTA
796125 TGTATCGATACATTTTTCTTTGTATCGATACAT
1 TGTATCGATACATTTTTCTTTGTATCGATACAT
796158 TGTATCGATACATTTTTCTTTGTATCGATACAT
1 TGTATCGATACATTTTTCTTTGTATCGATACAT
796191 TGTATCGATACA
1 TGTATCGATACA
796203 CTGTATCGAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (33 bp):
TGTATCGATACATTTTTCTTTGTATCGATACAT
Found at i:796360 original size:21 final size:21
Alignment explanation
Indices: 796336--796382 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
796326 AAATCTTTTG
796336 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
796357 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
796377 CAAAAT
1 CAAAAT
796383 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:796379 original size:20 final size:19
Alignment explanation
Indices: 796338--796380 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
796328 ATCTTTTGCA
796338 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
796358 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
796378 AAA
1 AAA
796381 ATCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:798774 original size:13 final size:13
Alignment explanation
Indices: 798756--798781 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
798746 TACAGCAAGT
798756 ATGTATCGATACA
1 ATGTATCGATACA
798769 ATGTATCGATACA
1 ATGTATCGATACA
798782 TAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:802987 original size:52 final size:52
Alignment explanation
Indices: 802896--803020 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 52
802886 AATCTCATTT
* * *
802896 TCACTGTTCATCACTATTCATGTATTGATACATTGTGAATAATATCGATACA
1 TCACTGTTCATCACTATTCATATATCGATACATTATGAATAATATCGATACA
* *
802948 TCACTGTTCATCACTATTCATATATCGATATATTATGAATAGTATCGATACA
1 TCACTGTTCATCACTATTCATATATCGATACATTATGAATAATATCGATACA
*
803000 TCACTGTTCATCACTGTTCAT
1 TCACTGTTCATCACTATTCAT
803021 CACTGTTCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (52 bp):
TCACTGTTCATCACTATTCATATATCGATACATTATGAATAATATCGATACA
Found at i:803013 original size:10 final size:10
Alignment explanation
Indices: 802998--803030 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
802988 AGTATCGATA
802998 CATCACTGTT
1 CATCACTGTT
803008 CATCACTGTT
1 CATCACTGTT
803018 CATCACTGTT
1 CATCACTGTT
803028 CAT
1 CAT
803031 GTATCAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.21, C:0.30, G:0.09, T:0.39
Consensus pattern (10 bp):
CATCACTGTT
Found at i:803017 original size:62 final size:62
Alignment explanation
Indices: 802946--803062 Score: 189
Period size: 62 Copynumber: 1.9 Consensus size: 62
802936 AATATCGATA
* *
802946 CATCACTGTTCATCACTATTCATATATCGATATATTATGAATAGTATCGATACATCACTGTT
1 CATCACTGTTCATCACTATTCATATATCAATATATTATGAATAGTATCAATACATCACTGTT
* * *
803008 CATCACTGTTCATCACTGTTCATGTATCAATATATTGTGAATAGTATCAATACAT
1 CATCACTGTTCATCACTATTCATATATCAATATATTATGAATAGTATCAATACAT
803063 TGAGTCCAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.38
Consensus pattern (62 bp):
CATCACTGTTCATCACTATTCATATATCAATATATTATGAATAGTATCAATACATCACTGTT
Found at i:805479 original size:26 final size:26
Alignment explanation
Indices: 805432--805488 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
805422 TAGACTTTGT
* * **
805432 ATCATGCAACCATGATAGCATTCCAC
1 ATCATGCAACCATAATACCATTAAAC
**
805458 ATCATGCATTCATAATACCATTAAAC
1 ATCATGCAACCATAATACCATTAAAC
805484 ATCAT
1 ATCAT
805489 TATTTTTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.26, G:0.07, T:0.28
Consensus pattern (26 bp):
ATCATGCAACCATAATACCATTAAAC
Found at i:805773 original size:28 final size:28
Alignment explanation
Indices: 805733--806234 Score: 494
Period size: 28 Copynumber: 17.6 Consensus size: 28
805723 AATACGACTT
*
805733 CTTTTCAAAGCCCACAAGTCGGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
805761 CTTTTCAAAGCCCACAAGTTAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
805790 C-TTTCAAAGCCCACAAGTCAGTGGCA-
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
805816 TTATTTTAAAGCCCACAAGTCAGTGGCATC
1 CT-TTTCAAAGCCCACAAGTCAGTGGCA-C
* *
805846 C-TTACAAAGCCCATAAGTCAGTGGCA-
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
805872 TTATTTCAAAGCCCACAAGTCAATGACAACC
1 CT-TTTCAAAGCCCACAAGTCAGTGGC-A-C
*
805903 CTTTTTAAAGCCCACAAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
*
805932 C-TTTCAAAGCCCACAAGTTAGTGGCAACC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-A-C
*
805961 CTTTTCAAAGCCCACAAGTAAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * *
805989 CTTCTCAAAGTCACACAAGTCAATGGCAT
1 CTTTTCAAAG-CCCACAAGTCAGTGGCAC
* *
806018 CTTTTCAAAGCCCATAAGTTAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
* *
806047 TCTTTTTAAAGCCCATAAGTCAGTGGCAAC
1 -CTTTTCAAAGCCCACAAGTCAGTGGC-AC
* *
806077 TCTTTTTAAAGCCCACAAGTCAGTGGCAT
1 -CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
806106 ATTTTCAAAGCCCACAAGTCAGTGGTAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * * *
806134 TTTTTTAAAGTCCTACAAGTTAATGGCACC
1 CTTTTCAAAG-CCCACAAGTCAGTGGCA-C
* * *
806164 CTTTT-AAAGCCCACAAGTAAGTGGTAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
806191 CTTTTTAAAGCCCACAAGTTAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
806219 CCTTTCAAAGCCCACA
1 CTTTTCAAAGCCCACA
806235 CAAGTTGATG
Statistics
Matches: 397, Mismatches: 59, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
27 5 0.01
28 238 0.60
29 52 0.13
30 101 0.25
31 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (28 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:806067 original size:145 final size:140
Alignment explanation
Indices: 805732--806234 Score: 579
Period size: 145 Copynumber: 3.5 Consensus size: 140
805722 CAATACGACT
* * *
805732 TCTTTTCAAAGCCCACAAGTCGGTGGC-AC-CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTC
1 TCTTTTCAAAGCCCACAAGTCAGTGGCAACTCTTTTTAAAGCCCACAAGTCAGTGGCATCCTTTC
* *
805795 AAAGCCCACAAGTCAGTGGCATTATTTT-AAAGCCCACAAGTCAGTGGCATCCTTACAAAGCCCA
66 AAAGCCCACAAGTCAGTGGCA--ATTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGTCCA
* *
805859 TAAGTCAGTGGCA
128 CAAGTCAATGGCA
* * *
805872 T-TATTTCAAAGCCCACAAGTCAATGACAACCCTTTTTAAAGCCCACAAGTCAGTGGCATCCTTT
1 TCT-TTTCAAAGCCCACAAGTCAGTGGCAACTCTTTTTAAAGCCCACAAGTCAGTGGCATCCTTT
* *
805936 CAAAGCCCACAAGTTAGTGGCAACCCTTTTCAAAGCCCACAAGTAAGTGGCACCTTCTCAAAGTC
65 CAAAGCCCACAAGTCAGTGGCAA---TTTTCAAAGCCCACAAGTCAGTGGCACCTT-TCAAAGTC
806001 ACACAAGTCAATGGCA
126 -CACAAGTCAATGGCA
* * * *
806017 TCTTTTCAAAGCCCATAAGTTAGTGGCAACTCTTTTTAAAGCCCATAAGTCAGTGGCAACTCTTT
1 TCTTTTCAAAGCCCACAAGTCAGTGGCAACTCTTTTTAAAGCCCACAAGTCAGTGGC-A-TCCTT
* * ** *
806082 TTAAAGCCCACAAGTCAGTGGCATATTTTCAAAGCCCACAAGTCAGTGGTATTTTTTTAAAGTCC
64 TCAAAGCCCACAAGTCAGTGGCA-ATTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGTCC
*
806147 TACAAGTTAATGGCA
127 -ACAAGTCAATGGCA
* * * * *
806162 CCCTTTT-AAAGCCCACAAGTAAGTGG-TA-TCTTTTTAAAGCCCACAAGTTAGTGGCACCCTTT
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCAACTCTTTTTAAAGCCCACAAGTCAGTGGCATCCTTT
806224 CAAAGCCCACA
65 CAAAGCCCACA
806235 CAAGTTGATG
Statistics
Matches: 312, Mismatches: 35, Indels: 31
0.83 0.09 0.08
Matches are distributed among these distances:
139 1 0.00
140 23 0.07
141 16 0.05
142 53 0.17
143 33 0.11
144 28 0.09
145 123 0.39
146 9 0.03
147 25 0.08
148 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (140 bp):
TCTTTTCAAAGCCCACAAGTCAGTGGCAACTCTTTTTAAAGCCCACAAGTCAGTGGCATCCTTTC
AAAGCCCACAAGTCAGTGGCAATTTTCAAAGCCCACAAGTCAGTGGCACCTTTCAAAGTCCACAA
GTCAATGGCA
Found at i:806792 original size:17 final size:18
Alignment explanation
Indices: 806760--806793 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
806750 AACTTTGATC
*
806760 ATTAAATAGTAAAAAAAT
1 ATTAAATAGGAAAAAAAT
806778 ATTAAA-AGGAAAAAAA
1 ATTAAATAGGAAAAAAA
806794 AAGGAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (18 bp):
ATTAAATAGGAAAAAAAT
Found at i:807518 original size:20 final size:19
Alignment explanation
Indices: 807493--807540 Score: 78
Period size: 20 Copynumber: 2.5 Consensus size: 19
807483 ATGGGTGGGG
*
807493 AAAAAGGAAGAAGAAGAAGA
1 AAAAAGAAAGAAGAAGAA-A
807513 AAAAAGAAAGAAGAAGAAA
1 AAAAAGAAAGAAGAAGAAA
807532 AAAAAGAAA
1 AAAAAGAAA
807541 AAAATATGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAGAAGAAGAAA
Found at i:812272 original size:48 final size:47
Alignment explanation
Indices: 812220--812326 Score: 133
Period size: 48 Copynumber: 2.3 Consensus size: 47
812210 TATGTTCAAA
*
812220 GTATCGATACATCTGGATTTCCCAGAATGTATCGATACAATGCAACTT
1 GTATCGATACATCTGGATTTCCCAGAATGTATCGATAC-ATGCAACAT
* * * * * **
812268 GTATCGATACATTTGGGTTTTCCAGATTGTATTGATACATGCATGAT
1 GTATCGATACATCTGGATTTCCCAGAATGTATCGATACATGCAACAT
812315 GTATCGATACAT
1 GTATCGATACAT
812327 ATTGTATCGA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 18 0.35
48 33 0.65
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (47 bp):
GTATCGATACATCTGGATTTCCCAGAATGTATCGATACATGCAACAT
Found at i:814190 original size:16 final size:16
Alignment explanation
Indices: 814166--814196 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
814156 TTTCTTGTTC
814166 TATGAAATTATGATTT
1 TATGAAATTATGATTT
*
814182 TATGCAATTATGATT
1 TATGAAATTATGATT
814197 ATGCTTTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.48
Consensus pattern (16 bp):
TATGAAATTATGATTT
Found at i:814877 original size:20 final size:20
Alignment explanation
Indices: 814852--814897 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
814842 TATTTCTATT
814852 GATACACA-TGAAAATGTATC
1 GATACACATTG-AAATGTATC
* *
814872 GATACATATTGCAATGTATC
1 GATACACATTGAAATGTATC
814892 GATACA
1 GATACA
814898 TTGTATCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (20 bp):
GATACACATTGAAATGTATC
Found at i:814903 original size:33 final size:33
Alignment explanation
Indices: 814866--814931 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
814856 CACATGAAAA
*
814866 TGTATCGATACATA-TTGCAATGTATCGATACAT
1 TGTATCGATACA-ACTTGCAATGTATCAATACAT
*
814899 TGTATCGATACAACTTGTAATGTATCAATACAT
1 TGTATCGATACAACTTGCAATGTATCAATACAT
814932 CATGTGAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 29 0.97
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (33 bp):
TGTATCGATACAACTTGCAATGTATCAATACAT
Found at i:814904 original size:13 final size:13
Alignment explanation
Indices: 814886--814910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
814876 CATATTGCAA
814886 TGTATCGATACAT
1 TGTATCGATACAT
814899 TGTATCGATACA
1 TGTATCGATACA
814911 ACTTGTAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:814924 original size:20 final size:21
Alignment explanation
Indices: 814899--814952 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
814889 ATCGATACAT
*
814899 TGTATCGATACAACTTGT-AA
1 TGTATCGATACAACATGTGAA
* *
814919 TGTATCAATACATCATGTGAA
1 TGTATCGATACAACATGTGAA
*
814940 TCTATCGATACAA
1 TGTATCGATACAA
814953 GTCATTGGCA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (21 bp):
TGTATCGATACAACATGTGAA
Found at i:815474 original size:19 final size:19
Alignment explanation
Indices: 815427--815499 Score: 92
Period size: 19 Copynumber: 3.7 Consensus size: 19
815417 ATTTCAACAA
*
815427 TTTGTATCGATACAAACAGT
1 TTTGTATCGATACATA-AGT
**
815447 AAATGTATCGATACATAAGT
1 -TTTGTATCGATACATAAGT
815467 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
815486 GTTGTATCGATACA
1 TTTGTATCGATACA
815500 ATGTATCGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 30 0.65
20 3 0.07
21 13 0.28
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:816484 original size:21 final size:24
Alignment explanation
Indices: 816440--816489 Score: 70
Period size: 21 Copynumber: 2.2 Consensus size: 24
816430 CCATCTCCAT
816440 CATTTTGGCAGCTCATGATTCATG
1 CATTTTGGCAGCTCATGATTCATG
*
816464 CATTTT-G-AGCT-ATGCTTCATG
1 CATTTTGGCAGCTCATGATTCATG
816485 CATTT
1 CATTT
816490 ATAGCATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 14 0.56
22 4 0.16
23 1 0.04
24 6 0.24
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.42
Consensus pattern (24 bp):
CATTTTGGCAGCTCATGATTCATG
Found at i:820127 original size:43 final size:43
Alignment explanation
Indices: 820066--820151 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
820056 GCATCTTCAT
*
820066 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
820109 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
820152 ATTTTCCATC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:821099 original size:13 final size:13
Alignment explanation
Indices: 821081--821105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
821071 CATAAAATGT
821081 TGTATCGATACAA
1 TGTATCGATACAA
821094 TGTATCGATACA
1 TGTATCGATACA
821106 TATTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:821121 original size:32 final size:33
Alignment explanation
Indices: 821061--821126 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
821051 TTCAACGATT
821061 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
** *
821094 TGTATCGATACAT-ATTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
821126 T
1 T
821127 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:821188 original size:13 final size:13
Alignment explanation
Indices: 821170--821194 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
821160 ATTACTCACA
821170 TGTATCGATACAT
1 TGTATCGATACAT
821183 TGTATCGATACA
1 TGTATCGATACA
821195 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:821331 original size:52 final size:52
Alignment explanation
Indices: 821203--821323 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
821193 CACTGATCTT
*
821203 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
821255 TGTATCGATACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
821307 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
821324 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:829640 original size:61 final size:61
Alignment explanation
Indices: 829560--830131 Score: 493
Period size: 61 Copynumber: 9.0 Consensus size: 61
829550 GCATTTTTTC
* *
829560 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCCTTTTAAGCCCACAACTCCGTGGCACCCT
* * * * * *
829621 TTTGAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCCT-TTTAAGCCCACAACTCCGTGGCACCCT
* * * * * * * *
829683 TATAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCG
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCCT-TTTAAGCCCACAACTCCGTGGCACCCT
*
829745 TTT-AAGCCCACAACTCCGTGGCA----C--CCGTTTAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCCTTTTAAGCCCACAACTCCGTGGCACC-----C
829803 TT
61 -T
* *
829805 TTTAAAGCCCACAACTCCGTGGCACCTT-TTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCCTTTT-AAGCCCACAACTCCGTGGCA-------
829869 TCCCT
58 -CCCT
* * *
829874 TTTCAAAGCCCACAACTCTGTGGCACCTTCTT-CTTTTCAAAGCCCACGACTCCGTGGCACTC-
1 TTT-AAAGCCCACAACTCCGTGGCACCTTCTTCCTTTT--AAGCCCACAACTCCGTGGCACCCT
*
829936 TTTAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTCAAAGCCCACAACTCTGTGGCACCTTCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCCTTTT--AAGCCCACAACTCCGTGGCA-C--C-
830000 TCT
60 -CT
* * *
830003 TTTCAAAGCCCACAACTCTGTGGCACCTTCTT-CTTTTCAAAGCCCACGACTCCGTGGCACTCTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTCTTCCTTTT--AAGCCCACAACTCCGTGGCAC-CCT
* ** * *
830067 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTCCTAAGCCCACAACTCTGTGGCACTCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTCTTCCTTTTAAGCCCACAACTCCGTGGCACCCT
830129 TTT
1 TTT
830132 TCCTTCTAAG
Statistics
Matches: 436, Mismatches: 40, Indels: 69
0.80 0.07 0.13
Matches are distributed among these distances:
54 24 0.06
55 1 0.00
59 1 0.00
60 3 0.01
61 119 0.27
62 95 0.22
63 42 0.10
64 9 0.02
65 3 0.01
66 7 0.02
67 23 0.05
68 52 0.12
69 4 0.01
70 30 0.07
71 21 0.05
75 2 0.00
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.31
Consensus pattern (61 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTCTTCCTTTTAAGCCCACAACTCCGTGGCACCCT
Found at i:829674 original size:34 final size:32
Alignment explanation
Indices: 829542--830202 Score: 445
Period size: 34 Copynumber: 20.8 Consensus size: 32
829532 AAAGTCCATG
* *
829542 ACTCGGTGGCA-TTTTTTCTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTTAAGCCCACA
* * *
829573 ACTCCGTGGCACCTTGTTCCTTTTAAGTCCACA
1 ACTCCGTGGCA-CTTTTTTCTTTTAAGCCCACA
*
829606 ACTCCGTGGCAC-----CCTTTTGAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTT-AAGCCCACA
* *
829634 ATTCCGTGGCACTTTTTTCATCTTTAAGTCCACA
1 ACTCCGTGGCACTTTTTTC-T-TTTAAGCCCACA
* *
829668 ACTCCGTGGCAC-----CCTTATAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTT-TTAAGCCCACA
* * *
829696 ATTCTGTGGCACTTTTTTCATCTTTAAGTCCACA
1 ACTCCGTGGCACTTTTTTC-T-TTTAAGCCCACA
* *
829730 ACTCCGTGGCAC-----CCGTTTAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTTAAGCCCACA
* *
829757 ACTCCGTGGCAC-----CCGTTTAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTTAAGCCCACA
*
829784 ACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTTC-TTTT-AAGCCCACA
*
829818 ACTCCGTGGCACCTTTTTCTTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTT-AAGCCCACA
*
829851 ACTCTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACA
1 ACTCCGTGGCACT-TTTTT--CTTTT--AAGCCCACA
* * * *
829888 ACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACG
1 ACTCCGTGGCACTTTTTTCTTTT--AAGCCCACA
*
829922 ACTCCGTGGCAC-----TCTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTTAAGCCCACA
* *
829949 ACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTT--AAGCCCACA
* * *
829983 ACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTT--AAGCCCACA
* * * *
830017 ACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACG
1 ACTCCGTGGCACTTTTTTCTTTT--AAGCCCACA
* *
830051 ACTCCGTGGCAC--TCTT-TTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTTCTTTTAAGCCCACA
**
830080 ACTCCGTGGCACTCTTTTTCCTCCTAAGCCCACA
1 ACTCCGTGGCACT-TTTTT-CTTTTAAGCCCACA
* *
830114 ACTCTGTGGCACTCTTTTTCCTTCTAAGCCCACA
1 ACTCCGTGGCACT-TTTTT-CTTTTAAGCCCACA
* *
830148 ACTCCGTGGCAC-----CCTTTTAAGCCCATA
1 ACTCCGTGGCACTTTTTTCTTTTAAGCCCACA
830175 ACTCCGTGGCACTTTTTTCATCTTTAAG
1 ACTCCGTGGCACTTTTTTC-T-TTTAAG
830203 TCCAATATCG
Statistics
Matches: 532, Mismatches: 50, Indels: 93
0.79 0.07 0.14
Matches are distributed among these distances:
27 101 0.19
28 39 0.07
29 27 0.05
31 13 0.02
32 15 0.03
33 58 0.11
34 244 0.46
35 4 0.01
36 9 0.02
37 22 0.04
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.31
Consensus pattern (32 bp):
ACTCCGTGGCACTTTTTTCTTTTAAGCCCACA
Found at i:829756 original size:27 final size:27
Alignment explanation
Indices: 829718--829796 Score: 149
Period size: 27 Copynumber: 2.9 Consensus size: 27
829708 TTTTTTCATC
*
829718 TTTAAGTCCACAACTCCGTGGCACCCG
1 TTTAAGCCCACAACTCCGTGGCACCCG
829745 TTTAAGCCCACAACTCCGTGGCACCCG
1 TTTAAGCCCACAACTCCGTGGCACCCG
829772 TTTAAGCCCACAACTCCGTGGCACC
1 TTTAAGCCCACAACTCCGTGGCACC
829797 TTTTTCTTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.23, C:0.39, G:0.18, T:0.20
Consensus pattern (27 bp):
TTTAAGCCCACAACTCCGTGGCACCCG
Found at i:829930 original size:165 final size:158
Alignment explanation
Indices: 829563--830165 Score: 631
Period size: 165 Copynumber: 3.7 Consensus size: 158
829553 TTTTTTCTTT
* * *
829563 AAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTGAAG
1 AAAGCCCACAACTCCGTGGCA-C-T-CT-CTTTTAAGCCCACAACTCCGTGGCACCC-TTTAAAG
* * * * *
829628 CCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACC-----CTTATAA
61 CCCACAACTCCGTGGCACCTTTTTC-TTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAA
* *
829688 AGCCCACAATTCTGTGGCACT-TTTTTCATCTTT-
125 AGCCCACAACTCTGTGGCACTCTTTTTCCT-TTTC
* *
829721 -AAGTCCACAACTCCGTGGCAC-C-CGTTTAAGCCCACAACTCCGTGGCACCCGTTT-AAGCCCA
1 AAAGCCCACAACTCCGTGGCACTCTCTTTTAAGCCCACAACTCCGTGGCACCC-TTTAAAGCCCA
829782 CAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCC
65 CAACTCCGTGGCACCTTTTTCTTTTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCC
829847 CACAACTCTGTGGCACTCTTTTTCCCTTTTC
129 CACAACTCTGTGGCACTCTTTTT-CCTTTTC
* * *
829878 AAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCACTCTTTAAAG
1 AAAGCCCACAACTCCGTGGCA-C-TC-TCTTTT--AAGCCCACAACTCCGTGGCACCCTTTAAAG
* * * *
829943 CCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCA
61 CCCACAACTCCGTGGCACCTTTTTCTTTT-TAAGCCCACAACTCCGTGGCACCTTTTTCTTTT-A
*
830008 AAGCCCACAACTCTGTGGCAC-CTTCTT-CTTTTC
124 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTC
* * *
830041 AAAGCCCACGACTCCGTGGCACTCT-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTCCT
1 AAAGCCCACAACTCCGTGGCACTCTCTTTT-AAGCCCACAACTCCGTGGCAC-C--CTT--T--A
* * * *
830105 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTTT
58 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAGCCCACAACTCCGTGGCACCTTTTT
830166 AAGCCCATAA
Statistics
Matches: 381, Mismatches: 36, Indels: 49
0.82 0.08 0.11
Matches are distributed among these distances:
149 4 0.01
150 47 0.12
151 29 0.08
155 26 0.07
156 9 0.02
157 21 0.06
158 39 0.10
159 5 0.01
160 1 0.00
161 5 0.01
162 1 0.00
163 30 0.08
164 3 0.01
165 131 0.34
166 30 0.08
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (158 bp):
AAAGCCCACAACTCCGTGGCACTCTCTTTTAAGCCCACAACTCCGTGGCACCCTTTAAAGCCCAC
AACTCCGTGGCACCTTTTTCTTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCA
CAACTCTGTGGCACTCTTTTTCCTTTTC
Found at i:830085 original size:131 final size:127
Alignment explanation
Indices: 829560--830192 Score: 602
Period size: 131 Copynumber: 5.0 Consensus size: 127
829550 GCATTTTTTC
* * *
829560 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA-C--C--C
1 TTTAAAGCCCACAACTCCGTGGCACCTT-TTTCTTTTAAGCCCACAACTCTGTGGCACCTTCTTC
* * * * * *
829620 TTTT-GAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCAC-CCT
65 TTTTCAAAGCCCACAACTCCGTGGCACCTTCTTC-T-TTTAAGCCCACAACTCCGTGGCACTCTT
* * * * * *
829683 TATAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCA-C--C--
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTC-T-TTTAAGCCCACAACTCTGTGGCACCTTCTT
* *
829743 CGTTT--AAGCCCACAACTCCGTGGCA-C--C--CGTTTAAGCCCACAACTCCGTGGCACCTTTT
64 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAGCCCACAACTCCGTGGCA-C----
829801 TCTT
124 TCTT
*
829805 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAGCCCACAACTCTGTGGCAC-CTTCTT
* *
829870 CCCTTTTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCACT
64 --CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTT--AAGCCCACAACTCCGTGGCACT
829935 C--
125 CTT
*
829936 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCACCTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT--AAGCCCACAACTCTGTGGCACCTTCTT
* *
830001 CTTTTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCACTCT
64 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTT--AAGCCCACAACTCCGTGGCACTCT
830066 T
127 T
** *
830067 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTCCTAAGCCCACAACTCTGTGGCACTCTTTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTAAGCCCACAACTCTGTGGCAC-CTTCT
* * *
830132 TC-CTTCTAAGCCCACAACTCCGTGGCA-C--C--CTTTTAAGCCCATAACTCCGTGGCACT-TT
63 TCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAGCCCACAACTCCGTGGCACTCTT
830190 TTT
1 TTT
830193 CATCTTTAAG
Statistics
Matches: 444, Mismatches: 34, Indels: 64
0.82 0.06 0.12
Matches are distributed among these distances:
116 22 0.05
117 1 0.00
118 1 0.00
120 3 0.01
121 19 0.04
122 33 0.07
123 50 0.11
124 49 0.11
126 5 0.01
128 1 0.00
129 68 0.15
130 1 0.00
131 127 0.29
132 34 0.08
133 5 0.01
134 1 0.00
136 4 0.01
137 1 0.00
138 19 0.04
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.31
Consensus pattern (127 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAGCCCACAACTCTGTGGCACCTTCTTCT
TTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAGCCCACAACTCCGTGGCACTCTT
Found at i:830192 original size:27 final size:27
Alignment explanation
Indices: 830133--830186 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
830123 CACTCTTTTT
*
830133 CCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
830160 CCTTTTAAGCCCATAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
830187 TTTTTTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.41, G:0.15, T:0.22
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:830256 original size:49 final size:49
Alignment explanation
Indices: 830191--830465 Score: 349
Period size: 49 Copynumber: 5.8 Consensus size: 49
830181 TGGCACTTTT
*
830191 TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATC
* * *
830240 TTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA--
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATC
*
830287 --C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATC
* *
830332 TTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATC
*
830379 --C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATT
1 TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATC
* *
830426 TTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
1 TT-CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCA
830466 CGTTGACATC
Statistics
Matches: 196, Mismatches: 15, Indels: 27
0.82 0.06 0.11
Matches are distributed among these distances:
43 76 0.39
45 4 0.02
47 1 0.01
49 82 0.42
50 1 0.01
52 32 0.16
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (49 bp):
TTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATC
Found at i:830308 original size:43 final size:44
Alignment explanation
Indices: 830196--830423 Score: 289
Period size: 43 Copynumber: 5.0 Consensus size: 44
830186 CTTTTTTCAT
*
830196 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----CA
* * *
830244 TCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC-
1 -CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACA
*
830288 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----CA
* *
830336 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC-
1 -CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACA
830380 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACA
830424 TTTTCCATCT
Statistics
Matches: 159, Mismatches: 13, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
43 79 0.50
45 2 0.01
47 1 0.01
49 77 0.48
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACA
Found at i:830353 original size:92 final size:92
Alignment explanation
Indices: 830196--830466 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
830186 CTTTTTTCAT
830196 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
830261 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
830288 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
830353 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
830380 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
830445 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
830467 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:831370 original size:13 final size:13
Alignment explanation
Indices: 831352--831376 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
831342 CATAAAATGT
831352 TGTATCGATACAA
1 TGTATCGATACAA
831365 TGTATCGATACA
1 TGTATCGATACA
831377 TATTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:831392 original size:32 final size:33
Alignment explanation
Indices: 831332--831397 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
831322 TTCAACGATT
831332 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
** *
831365 TGTATCGATACAT-ATTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
831397 T
1 T
831398 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:831459 original size:13 final size:13
Alignment explanation
Indices: 831441--831465 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
831431 ATTACTCACA
831441 TGTATCGATACAT
1 TGTATCGATACAT
831454 TGTATCGATACA
1 TGTATCGATACA
831466 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:831602 original size:52 final size:52
Alignment explanation
Indices: 831474--831594 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
831464 CACTGATCTT
*
831474 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
831526 TGTATCGATACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
831578 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
831595 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:836370 original size:90 final size:90
Alignment explanation
Indices: 836195--836516 Score: 369
Period size: 90 Copynumber: 3.6 Consensus size: 90
836185 TCAAATACCT
* ** *
836195 AAAGTGTGCAG-CCTATCCATTTCCCAATCATATCCTTTTCCCTCAATTGCCAGATGATATTGAT
1 AAAG-GTGCAGACC-ATACATTTCCCAATCATATCCTTTTCTTTTAATTGCCAGATGATATTGAT
* * * * *
836259 GCATCCTAGAGCCAAACACCTTAAGGT
64 GCATCCCAGAGCCTAATACCTTAGGGC
** * * * * * *
836286 AAAGGTGTGGCCCATCCATTTCCTAGTCATATCCTTTTCTTTTAATTGCTAGATAATATTGATGC
1 AAAGGTGCAGACCATACATTTCCCAATCATATCCTTTTCTTTTAATTGCCAGATGATATTGATGC
836351 ATCCCAGAGCCTAATACCTTAGGGC
66 ATCCCAGAGCCTAATACCTTAGGGC
* *
836376 AAAGGTGCAGTCCATACATTTCCCAATCATATCCTTTTCTTTTAATTGCCAAATGATATTGATGC
1 AAAGGTGCAGACCATACATTTCCCAATCATATCCTTTTCTTTTAATTGCCAGATGATATTGATGC
*
836441 ATCCCAGAACCTAATACCTTAGGGC
66 ATCCCAGAGCCTAATACCTTAGGGC
** ** * *
836466 AGGGGTGCAGACCATACATTTCTTAGTCATATCCTTTT-TCTTTATTTGCCA
1 AAAGGTGCAGACCATACATTTCCCAATCATATCCTTTTCT-TTTAATTGCCA
836517 AATGGCATTG
Statistics
Matches: 198, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
89 1 0.01
90 191 0.96
91 6 0.03
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.34
Consensus pattern (90 bp):
AAAGGTGCAGACCATACATTTCCCAATCATATCCTTTTCTTTTAATTGCCAGATGATATTGATGC
ATCCCAGAGCCTAATACCTTAGGGC
Found at i:836517 original size:90 final size:90
Alignment explanation
Indices: 836195--836598 Score: 368
Period size: 90 Copynumber: 4.5 Consensus size: 90
836185 TCAAATACCT
* * * * * * *
836195 AAAGTGTGCAG-CCTATCCATTTCCCAATCATATCCTTTTCCCTCAATTGCCAGATGATATTGAT
1 AAAG-GTGCAGTCC-ATACATTTCCTAGTCATATCCTTTTTCTTTAATTGCCAAATGATATTGAT
* * * *
836259 GCATCCTAGAGCCAAACACCTTAAGGT
64 GCATCCCAGAGCCTAATACCTTAAGGC
** * * * * *
836286 AAAGGTGTGGCCCATCCATTTCCTAGTCATATCC-TTTTCTTTTAATTGCTAGATAATATTGATG
1 AAAGGTGCAGTCCATACATTTCCTAGTCATATCCTTTTTC-TTTAATTGCCAAATGATATTGATG
*
836350 CATCCCAGAGCCTAATACCTTAGGGC
65 CATCCCAGAGCCTAATACCTTAAGGC
* *
836376 AAAGGTGCAGTCCATACATTTCCCAATCATATCC-TTTTCTTTTAATTGCCAAATGATATTGATG
1 AAAGGTGCAGTCCATACATTTCCTAGTCATATCCTTTTTC-TTTAATTGCCAAATGATATTGATG
* *
836440 CATCCCAGAACCTAATACCTTAGGGC
65 CATCCCAGAGCCTAATACCTTAAGGC
** * * * ** *
836466 AGGGGTGCAGACCATACATTTCTTAGTCATATCCTTTTTCTTTATTTGCCAAATGGCATTGGTGC
1 AAAGGTGCAGTCCATACATTTCCTAGTCATATCCTTTTTCTTTAATTGCCAAATGATATTGATGC
** * *
836531 ATCGTAGCGCCTAAT-CTCTTAAGAC
66 ATCCCAGAGCCTAATAC-CTTAAGGC
* * * * *
836556 AATGGTGCAGTCCATCCATTT-TTAGTTATATCCTTTTCCTTTA
1 AAAGGTGCAGTCCATACATTTCCTAGTCATATCCTTTTTCTTTA
836599 TCCACTAGAT
Statistics
Matches: 263, Mismatches: 46, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
89 25 0.10
90 227 0.86
91 11 0.04
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.34
Consensus pattern (90 bp):
AAAGGTGCAGTCCATACATTTCCTAGTCATATCCTTTTTCTTTAATTGCCAAATGATATTGATGC
ATCCCAGAGCCTAATACCTTAAGGC
Found at i:836545 original size:180 final size:180
Alignment explanation
Indices: 836195--836576 Score: 428
Period size: 180 Copynumber: 2.1 Consensus size: 180
836185 TCAAATACCT
*
836195 AAAGTGTGCAG-CCTATCCATTTCCCAATCATATCCTTTTCCCTCAATTGCCAGATGATATTGAT
1 AAAG-GTGCAGTCC-ATCCATTTCCCAATCATATCCTTTTCCCTCAATTGCCAAATGATATTGAT
* * * ** * *
836259 GCATCCTAGAGCCAAACACCTTAAGGTAAAGGTGTGGCCCATCCATTTCCTAGTCATATCCTTTT
64 GCATCCCAGAACCAAACACCTTAAGGCAAAGGTGCAGACCATACATTTCCTAGTCATATCCTTTT
* * * * *
836324 CTTTTAATTGCTAGATAATATTGATGCATCCCAGAGCCTAATAC-CTTAGGGC
129 CTTTTAATTGCCAAATAACATTGATGCATCCCAGAGCCTAAT-CTCTTAAGAC
* ** *
836376 AAAGGTGCAGTCCATACATTTCCCAATCATATCCTTTTCTTTTAATTGCCAAATGATATTGATGC
1 AAAGGTGCAGTCCATCCATTTCCCAATCATATCCTTTTCCCTCAATTGCCAAATGATATTGATGC
* * * ** *
836441 ATCCCAGAACCTAATACCTTAGGGCAGGGGTGCAGACCATACATTTCTTAGTCATATCCTTTT-T
66 ATCCCAGAACCAAACACCTTAAGGCAAAGGTGCAGACCATACATTTCCTAGTCATATCCTTTTCT
* ** * ** *
836505 CTTTATTTGCCAAATGGCATTGGTGCATCGTAGCGCCTAATCTCTTAAGAC
131 -TTTAATTGCCAAATAACATTGATGCATCCCAGAGCCTAATCTCTTAAGAC
*
836556 AATGGTGCAGTCCATCCATTT
1 AAAGGTGCAGTCCATCCATTT
836577 TTAGTTATAT
Statistics
Matches: 166, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
179 2 0.01
180 158 0.95
181 6 0.04
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (180 bp):
AAAGGTGCAGTCCATCCATTTCCCAATCATATCCTTTTCCCTCAATTGCCAAATGATATTGATGC
ATCCCAGAACCAAACACCTTAAGGCAAAGGTGCAGACCATACATTTCCTAGTCATATCCTTTTCT
TTTAATTGCCAAATAACATTGATGCATCCCAGAGCCTAATCTCTTAAGAC
Found at i:837331 original size:84 final size:83
Alignment explanation
Indices: 837243--837478 Score: 222
Period size: 84 Copynumber: 2.8 Consensus size: 83
837233 TTGTCATTCA
* ** * * *
837243 GCTTTGACCCGAGAGACTTCATCAGCCCTTGTCTACCTATCGGCTTTGACCCAGGAGACTTTTTT
1 GCTTTGACCCAAGAGACTTTTTCA-CCCTTGTCTACCCATCAGCTTTGACCCAGGAGACTTTTTC
* ** *
837308 ACCCTTTGTCTACCTATCG
65 ACCCCTAATCTACCGATCG
* * * * * * *
837327 GCTTTGACCCAAGAAACTTTTTCACCTCTTATTTGCCCGTCAGCTTTGACTCGGGAGACTTTTTC
1 GCTTTGACCCAAGAGACTTTTTCACC-CTTGTCTACCCATCAGCTTTGACCCAGGAGACTTTTTC
837392 ACCCCTAATCTACCGATCG
65 ACCCCTAATCTACCGATCG
* * * ** *
837411 ACTTTGACCCAAGAGACTTTTTCACCCCTTGTCTGCCCGA-CAGCTTTGAGCTGGGAGACTTCTT
1 GCTTTGACCCAAGAGACTTTTTCA-CCCTTGTCTACCC-ATCAGCTTTGACCCAGGAGACTTTTT
837475 CACC
64 CACC
837479 TTTTGTTTGC
Statistics
Matches: 123, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
83 2 0.02
84 119 0.97
85 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.32
Consensus pattern (83 bp):
GCTTTGACCCAAGAGACTTTTTCACCCTTGTCTACCCATCAGCTTTGACCCAGGAGACTTTTTCA
CCCCTAATCTACCGATCG
Found at i:837331 original size:126 final size:126
Alignment explanation
Indices: 837201--837444 Score: 303
Period size: 126 Copynumber: 1.9 Consensus size: 126
837191 CTGCTCGTCA
* * * *
837201 GCTTTGACTCAGGAAA-TTTATTCATCC-CTTATTTGTCATTCAGCTTTGACCCGAGAGACTTCA
1 GCTTTGACCCAAGAAACTTT-TTCA-CCTCTTATTTGCCAGTCAGCTTTGACCCGAGAGACTTCA
* ** * * * * *
837264 TCAGCCCTTGTCTACCTATCGGCTTTGACCCAGGAGACTTTTTTACCCTTTGTCTACCTATCG
64 TCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCCTTGTCTACCTATCG
* * * **
837327 GCTTTGACCCAAGAAACTTTTTCACCTCTTATTTGCCCGTCAGCTTTGACTCGGGAGACTTTTTC
1 GCTTTGACCCAAGAAACTTTTTCACCTCTTATTTGCCAGTCAGCTTTGACCCGAGAGACTTCATC
837392 ACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCCTTGTCT
66 ACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCCTTGTCT
837445 GCCCGACAGC
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
125 2 0.02
126 94 0.95
127 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (126 bp):
GCTTTGACCCAAGAAACTTTTTCACCTCTTATTTGCCAGTCAGCTTTGACCCGAGAGACTTCATC
ACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCCTTGTCTACCTATCG
Found at i:837373 original size:42 final size:42
Alignment explanation
Indices: 837190--837459 Score: 168
Period size: 42 Copynumber: 6.4 Consensus size: 42
837180 TTACCTTTTG
* * * * *
837190 TCTGCTCGTCAGCTTTGACTCAGGA-AATTTATTCATCCCTTA
1 TCTGCCCGTCAGCTTTGACCCAAGAGACTTT-TTCACCCCTTA
* * ** * ** * *
837232 TTTGTCATTCAGCTTTGACCCGAGAGACTTCATCAGCCCTTG
1 TCTGCCCGTCAGCTTTGACCCAAGAGACTTTTTCACCCCTTA
* ** * * * * *
837274 TCTACCTATCGGCTTTGACCCAGGAGACTTTTTTACCCTTTG
1 TCTGCCCGTCAGCTTTGACCCAAGAGACTTTTTCACCCCTTA
* ** * * *
837316 TCTACCTATCGGCTTTGACCCAAGAAACTTTTTCACCTCTTA
1 TCTGCCCGTCAGCTTTGACCCAAGAGACTTTTTCACCCCTTA
* * ** *
837358 TTTGCCCGTCAGCTTTGACTCGGGAGACTTTTTCACCCCTAA
1 TCTGCCCGTCAGCTTTGACCCAAGAGACTTTTTCACCCCTTA
* *
837400 TCT-ACCGATC-GACTTTGACCCAAGAGACTTTTTCACCCCTTG
1 TCTGCCCG-TCAG-CTTTGACCCAAGAGACTTTTTCACCCCTTA
*
837442 TCTGCCCGACAGCTTTGA
1 TCTGCCCGTCAGCTTTGA
837460 GCTGGGAGAC
Statistics
Matches: 171, Mismatches: 52, Indels: 10
0.73 0.22 0.04
Matches are distributed among these distances:
41 4 0.02
42 160 0.94
43 7 0.04
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (42 bp):
TCTGCCCGTCAGCTTTGACCCAAGAGACTTTTTCACCCCTTA
Found at i:837457 original size:126 final size:126
Alignment explanation
Indices: 837187--837459 Score: 300
Period size: 126 Copynumber: 2.2 Consensus size: 126
837177 ACTTTACCTT
* * * * * *
837187 TTGTCTGCTCGTCAGCTTTGACTCAGGAAATTTATTCATCCCTTATTTGTCATTCAGCTTTGACC
1 TTGTCTGCCCGACAGCTTTGACCCAAGAAATTTATTCATCCCTTATTTGCCAGTCAGCTTTGACC
* ** * * * * *
837252 CGAGAGACTTCATCAGCCCTTGTCTACCTATCGGCTTTGACCCAGGAGACTTTTTTACCCT
66 CGAGAGACTTCATCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCC
* * * *
837313 TTGTCT-ACCTATCGGCTTTGACCCAAGAAACTTT-TTCA-CCTCTTATTTGCCCGTCAGCTTTG
1 TTGTCTGCCCGA-CAGCTTTGACCCAAGAAA-TTTATTCATCC-CTTATTTGCCAGTCAGCTTTG
* * **
837375 ACTCGGGAGACTTTTTCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCC
63 ACCCGAGAGACTTCATCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCC
837439 TTGTCTGCCCGACAGCTTTGA
1 TTGTCTGCCCGACAGCTTTGA
837460 GCTGGGAGAC
Statistics
Matches: 118, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
125 3 0.03
126 109 0.92
127 6 0.05
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (126 bp):
TTGTCTGCCCGACAGCTTTGACCCAAGAAATTTATTCATCCCTTATTTGCCAGTCAGCTTTGACC
CGAGAGACTTCATCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCC
Found at i:837469 original size:42 final size:41
Alignment explanation
Indices: 837342--837478 Score: 125
Period size: 42 Copynumber: 3.3 Consensus size: 41
837332 GACCCAAGAA
* * *
837342 ACTTTTTCACCTCTTATTTGCCCGTCAGCTTTGACTCGGGAG
1 ACTTTTTCACCCCTTATCTGCCCGACAGCTTTGACT-GGGAG
* * ***
837384 ACTTTTTCACCCCTAATCT-ACCGATC-GACTTTGACCCAAGAG
1 ACTTTTTCACCCCTTATCTGCCCGA-CAG-CTTTGA-CTGGGAG
*
837426 ACTTTTTCACCCCTTGTCTGCCCGACAGCTTTGAGCTGGGAG
1 ACTTTTTCACCCCTTATCTGCCCGACAGCTTTGA-CTGGGAG
*
837468 ACTTCTTCACC
1 ACTTTTTCACC
837479 TTTTGTTTGC
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
41 4 0.05
42 64 0.86
43 6 0.08
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.33
Consensus pattern (41 bp):
ACTTTTTCACCCCTTATCTGCCCGACAGCTTTGACTGGGAG
Found at i:837477 original size:126 final size:126
Alignment explanation
Indices: 837198--837512 Score: 294
Period size: 126 Copynumber: 2.5 Consensus size: 126
837188 TGTCTGCTCG
* * * * * * *
837198 TCAGCTTTGACTCAGGAAATTTATTCATCC-CTTATTTG-TCATTCAGCTTTGACCCGAGAGACT
1 TCAGCTTTGACCCAAGAAACTTCTTCA-CCTCTTATTTGCCCA-TCAGCTTTGACTCGGGAGACT
* ** * * * * * *
837261 TCATCAGCCCTTGTCTACCTATCGGCTTTGACCCAGGAGACTTTTTTACCCTTTGTCTACCTA
64 TCATCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCCTTGTCTACCGA
* * * *
837324 TCGGCTTTGACCCAAGAAACTTTTTCACCTCTTATTTGCCCGTCAGCTTTGACTCGGGAGACTTT
1 TCAGCTTTGACCCAAGAAACTTCTTCACCTCTTATTTGCCCATCAGCTTTGACTCGGGAGACTTC
* *
837389 TTCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCCTTGTCTGCCCGA
66 ATCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCCTTGTCT-ACCGA
* *** * * * * * *
837451 -CAGCTTTGAGCTGGGAGACTTCTTCACCTTTTGTTTGCCCATCGGCTTTCACTCAGGAGACT
1 TCAGCTTTGACCCAAGAAACTTCTTCACCTCTTATTTGCCCATCAGCTTTGACTCGGGAGACT
837513 CGTTTCTCTT
Statistics
Matches: 152, Mismatches: 34, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
125 2 0.01
126 146 0.96
127 4 0.03
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (126 bp):
TCAGCTTTGACCCAAGAAACTTCTTCACCTCTTATTTGCCCATCAGCTTTGACTCGGGAGACTTC
ATCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTCACCCCTTGTCTACCGA
Found at i:837512 original size:84 final size:84
Alignment explanation
Indices: 837285--837499 Score: 252
Period size: 84 Copynumber: 2.6 Consensus size: 84
837275 CTACCTATCG
* * * * *
837285 GCTTTGACCCAGGAGACTTTTTTACCCTTTGTCTACCTATCGGCTTTGACCCAAGAAACTTTTTC
1 GCTTTGACTCGGGAGACTTTTTCACCCTTTGTCTACCCATCGGCTTTGACCCAAGAGACTTTTTC
* * *
837350 ACCTCTTATTTGCCCGTCA
66 ACCCCTTATCTGCCCGACA
* ** * *
837369 GCTTTGACTCGGGAGACTTTTTCACCCCTAATCTACCGATCGACTTTGACCCAAGAGACTTTTTC
1 GCTTTGACTCGGGAGACTTTTTCACCCTTTGTCTACCCATCGGCTTTGACCCAAGAGACTTTTTC
*
837434 ACCCCTTGTCTGCCCGACA
66 ACCCCTTATCTGCCCGACA
* * * *
837453 GCTTTGAGCT-GGGAGACTTCTTCACCTTTTGTTTGCCCATCGGCTTT
1 GCTTTGA-CTCGGGAGACTTTTTCACCCTTTGTCTACCCATCGGCTTT
837500 CACTCAGGAG
Statistics
Matches: 108, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
84 106 0.98
85 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (84 bp):
GCTTTGACTCGGGAGACTTTTTCACCCTTTGTCTACCCATCGGCTTTGACCCAAGAGACTTTTTC
ACCCCTTATCTGCCCGACA
Found at i:838091 original size:20 final size:20
Alignment explanation
Indices: 838068--838133 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
838058 AAAATAACTA
838068 AATAAAAATATATATAAAAT
1 AATAAAAATATATATAAAAT
* *
838088 AATAATAATA-AAATAAAAT
1 AATAAAAATATATATAAAAT
* *
838107 ATATAATAATATAT-TATAAT
1 A-ATAAAAATATATATAAAAT
838127 AA-AAAAA
1 AATAAAAA
838134 GAAATCAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 4 0.10
19 10 0.26
20 24 0.62
21 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AATAAAAATATATATAAAAT
Found at i:838108 original size:30 final size:31
Alignment explanation
Indices: 838053--838130 Score: 90
Period size: 30 Copynumber: 2.5 Consensus size: 31
838043 CGATTTATTT
*
838053 AATATAAAATAACT-AAATAAAAATATATATAA
1 AATATATAATAA-TAAAATAAAAATATATA-AA
*
838085 AATA-ATAATAATAAAAT-AAAATATATAAT
1 AATATATAATAATAAAATAAAAATATATAAA
*
838114 AATATATTATAATAAAA
1 AATATATAATAATAAAA
838131 AAAGAAATCA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.12
30 22 0.54
31 10 0.24
32 4 0.10
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (31 bp):
AATATATAATAATAAAATAAAAATATATAAA
Found at i:838117 original size:10 final size:10
Alignment explanation
Indices: 838052--838127 Score: 57
Period size: 10 Copynumber: 7.5 Consensus size: 10
838042 TCGATTTATT
*
838052 TAATATAAAA
1 TAATATATAA
*
838062 TAACTAAATAA
1 TAA-TATATAA
*
838073 AAATATAT-A
1 TAATATATAA
*
838082 TAAAATAATAA
1 TAATAT-ATAA
*
838093 TAATAAAATAA
1 TAAT-ATATAA
838104 -AATATATAA
1 TAATATATAA
*
838113 TAATATATTA
1 TAATATATAA
838123 TAATA
1 TAATA
838128 AAAAAAGAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
9 10 0.20
10 25 0.49
11 15 0.29
12 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (10 bp):
TAATATATAA
Found at i:838131 original size:26 final size:26
Alignment explanation
Indices: 838053--838130 Score: 74
Period size: 25 Copynumber: 3.1 Consensus size: 26
838043 CGATTTATTT
838053 AATATAAAATAACT-A-AATAAAA-ATA
1 AATATAAAATAA-TAATAATAAAATA-A
*
838078 TATATAAAATAATAATAATAAAATAA
1 AATATAAAATAATAATAATAAAATAA
* * *
838104 AATATATAATAAT-ATATTATAATAA
1 AATATAAAATAATAATAATAAAATAA
838129 AA
1 AA
838131 AAAGAAATCA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.02
25 24 0.53
26 19 0.42
27 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (26 bp):
AATATAAAATAATAATAATAAAATAA
Found at i:838499 original size:23 final size:23
Alignment explanation
Indices: 838473--838546 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
838463 ACTAGCAAGT
838473 AAGACAAGCAGCGGCAATAACTA
1 AAGACAAGCAGCGGCAATAACTA
* ** ** *
838496 AAGAC-AGTAGCAACTAGCAAGT-
1 AAGACAAGCAGCGGC-AATAACTA
*
838518 AAGACAAGCAACGGCAATAACTA
1 AAGACAAGCAGCGGCAATAACTA
838541 AAGACA
1 AAGACA
838547 GTAGCAACCA
Statistics
Matches: 35, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
22 15 0.43
23 20 0.57
ACGTcount: A:0.50, C:0.20, G:0.20, T:0.09
Consensus pattern (23 bp):
AAGACAAGCAGCGGCAATAACTA
Found at i:838508 original size:45 final size:45
Alignment explanation
Indices: 838458--838554 Score: 185
Period size: 45 Copynumber: 2.2 Consensus size: 45
838448 AAGAAAGAAA
*
838458 TAGCAACTAGCAAGTAAGACAAGCAGCGGCAATAACTAAAGACAG
1 TAGCAACTAGCAAGTAAGACAAGCAACGGCAATAACTAAAGACAG
838503 TAGCAACTAGCAAGTAAGACAAGCAACGGCAATAACTAAAGACAG
1 TAGCAACTAGCAAGTAAGACAAGCAACGGCAATAACTAAAGACAG
838548 TAGCAAC
1 TAGCAAC
838555 CAACAAGCAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (45 bp):
TAGCAACTAGCAAGTAAGACAAGCAACGGCAATAACTAAAGACAG
Found at i:844476 original size:52 final size:52
Alignment explanation
Indices: 844391--844515 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
844381 ATATGAAAAG
* *
844391 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
844443 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
844495 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
844516 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:844528 original size:52 final size:51
Alignment explanation
Indices: 844391--844535 Score: 211
Period size: 52 Copynumber: 2.8 Consensus size: 51
844381 ATATGAAAAG
*
844391 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
844443 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
844495 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
844536 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:844542 original size:13 final size:13
Alignment explanation
Indices: 844524--844548 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
844514 CAAAGATCAG
844524 TGTATCGATACAA
1 TGTATCGATACAA
844537 TGTATCGATACA
1 TGTATCGATACA
844549 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:844632 original size:13 final size:13
Alignment explanation
Indices: 844614--844638 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
844604 AAAAAAAATA
844614 TGTATCGATACAT
1 TGTATCGATACAT
844627 TGTATCGATACA
1 TGTATCGATACA
844639 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:845733 original size:49 final size:49
Alignment explanation
Indices: 845524--846130 Score: 795
Period size: 49 Copynumber: 12.7 Consensus size: 49
845514 AAAAGGATGT
*
845524 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
845576 CGATATGCTGATTCAAGGCTAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
845619 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
845667 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
845716 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
845764 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
845813 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
845862 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
845905 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
845954 CAATATGCTGATTCAAGGCCAGCCATATTAGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
845997 CAATGTGCTGATTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
** * * *
846046 CAATAAGCTGATTCAAGGCCAGCTATATTGGGCTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
846095 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
846131 GAAGGGTTGC
Statistics
Matches: 494, Mismatches: 41, Indels: 43
0.85 0.07 0.07
Matches are distributed among these distances:
43 111 0.22
45 2 0.00
47 2 0.00
48 95 0.19
49 254 0.51
52 30 0.06
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:845953 original size:92 final size:92
Alignment explanation
Indices: 845515--846130 Score: 804
Period size: 92 Copynumber: 6.5 Consensus size: 92
845505 AGATGATGAA
* * *
845515 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
*
845580 ATGCTGATTCAAGGCTAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
845611 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
845675 TGATTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
*
845702 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
* *
845766 ATGTGCTGATTCAAGGCCAGCTACATTGGACTT
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
845799 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
*
845864 ATATGCTGATTCAAGGCCAGCGATATTGGACTT
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
845897 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
845962 TGATTCAAGGCCAGCCATATTAGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* * *
845989 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATAAGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
846054 TGATTCAAGGCCAGCTATATTGGGCTTAAAGAT
66 TGATTCAAGGCCAGCTATATTGGAC-T-----T
* * *
846087 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
846131 GAAGGGTTGC
Statistics
Matches: 479, Mismatches: 28, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
91 37 0.08
92 170 0.35
93 1 0.00
94 2 0.00
95 42 0.09
96 5 0.01
97 144 0.30
98 78 0.16
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTT
Found at i:845970 original size:141 final size:141
Alignment explanation
Indices: 845524--846130 Score: 796
Period size: 141 Copynumber: 4.3 Consensus size: 141
845514 AAAAGGATGT
* *
845524 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATATGCTGATT
* *
845589 CAAGGCTAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
63 CAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
845654 AAAGGTG-AGGTGC
128 AAAGATGAAGGTGC
* *
845667 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
845732 GGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
66 GGCCAGCTACATTGGACTT--A-A--AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
845797 TTAAAGATGAAGGTGC
126 TTAAAGATGAAGGTGC
* * *
845813 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
* *
845878 GGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
66 GGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
*
845943 GATGAAGATGC
131 GATGAAGGTGC
* * * * *
845954 CAATATGCTGATTCAAGGCCAGCCATATTAGACTT----A--AAGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
* ** * *
846013 GGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATAAGCTGATTCAAGGCCAGCTATATTGGG
66 GGCCAGCTACATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
*
846078 CTTAAAGATAAAGGTGC
125 CTTAAAGATGAAGGTGC
* * *
846095 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
846131 GAAGGGTTGC
Statistics
Matches: 416, Mismatches: 35, Indels: 27
0.87 0.07 0.06
Matches are distributed among these distances:
135 34 0.08
136 1 0.00
137 1 0.00
140 37 0.09
141 168 0.40
142 2 0.00
143 42 0.10
144 1 0.00
145 47 0.11
146 83 0.20
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (141 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
GGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
GATGAAGGTGC
Found at i:846243 original size:34 final size:34
Alignment explanation
Indices: 846130--846299 Score: 239
Period size: 33 Copynumber: 5.2 Consensus size: 34
846120 TATTGGGCTT
846130 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
*
846163 AG-AGGG-TTGCCATCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
* *
846194 AG--GGGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
*
846226 AGAAGGGTTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
*
846260 AGAA-GGTTTGCCATCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
846293 A-AAGGGT
1 AGAAGGGT
846300 GAAAGATGCC
Statistics
Matches: 126, Mismatches: 6, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
30 3 0.02
31 25 0.20
32 32 0.25
33 33 0.26
34 33 0.26
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.29
Consensus pattern (34 bp):
AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:846280 original size:33 final size:33
Alignment explanation
Indices: 846130--846299 Score: 249
Period size: 32 Copynumber: 5.2 Consensus size: 33
846120 TATTGGGCTT
846130 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
846163 AG-AGGGTTGCCATCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
846194 AG-GGGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
846226 AGAAGGGTTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
* *
846260 AGAAGGTTTGCCATCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
846293 A-AAGGGT
1 AGAAGGGT
846300 GAAAGATGCC
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
31 28 0.22
32 35 0.28
33 30 0.24
34 32 0.26
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.29
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:846413 original size:34 final size:35
Alignment explanation
Indices: 846281--846969 Score: 733
Period size: 34 Copynumber: 20.3 Consensus size: 35
846271 CATCGACTTG
** *
846281 TGTGGGCTTTAGAAAGGGTGAAAGA-TGCCACGAAGT
1 TGTGGGCTTTA-AAA-GGAAAAAGAGTGCCACGGAGT
* * * *
846317 TGTGGAC-TTAAAAAGAACAAG-GTGGCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
846350 TGTGGGCTTTAAAAGGGAAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAA-GG-AAAAAGAGTGCCACGGAGT
* *
846387 TGTGGGC-TTAGAAGGAAAAAGTGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
*
846421 TGTGGGC-TTAGAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
*
846455 TGTGGGC-TTAGAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
* *
846489 TGTGGGC-TTAGAAGG-AAAAGAGTGCCACGTAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
*
846522 TGTGGGCTTT-AAAGG-AAAAGAGTGCCACGTAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
* *
846555 CGTGGGCTTT-AAAGG-AAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
* *
846588 CGTGGAC-TTAAAA-G-----G-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
*
846615 TGTGGGC-TTAGAAGG-AAAAGAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAG-A-GTGCCACGGAGT
846650 TGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAGAGTGCCACGGAGT
*
846687 TGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
*
846721 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAGAGTGCCACGGAGT
** * *
846758 TGTGGGCTTTAAAAACAAAAAGTGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
*
846793 TGTGGGCTTTAAAA-GAAAAAG-GTGCCATGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
* *
846826 TGTGGGCTTTAAAAAGAAAAAG-GTGCCACGAAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
* *
846860 TGTGGAC-TTAAAGATGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGAGTGCCACGGAGT
*
846894 TGTGGGCTTTGAAAA-GAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGAAAAAGAGTGCCACGGAGT
*
846928 TGTGGGCTTT-AAAGG-AAAAG-GTGCCACTGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
* *
846960 CGTGGACTTT
1 TGTGGGCTTT
846970 GAGCAGAGAT
Statistics
Matches: 579, Mismatches: 45, Indels: 62
0.84 0.07 0.09
Matches are distributed among these distances:
27 21 0.04
28 2 0.00
32 30 0.05
33 134 0.23
34 213 0.37
35 71 0.12
36 36 0.06
37 64 0.11
38 3 0.01
39 5 0.01
ACGTcount: A:0.33, C:0.12, G:0.35, T:0.21
Consensus pattern (35 bp):
TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
Found at i:846608 original size:27 final size:27
Alignment explanation
Indices: 846570--846629 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
846560 GCTTTAAAGG
*
846570 AAAAGAGTGCCACAGAGTCGTGGACTT
1 AAAAGGGTGCCACAGAGTCGTGGACTT
* * *
846597 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACAGAGTCGTGGACTT
*
846624 AGAAGG
1 AAAAGG
846630 AAAAGAAGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.15, G:0.37, T:0.18
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTCGTGGACTT
Found at i:846987 original size:31 final size:31
Alignment explanation
Indices: 846949--847031 Score: 157
Period size: 31 Copynumber: 2.7 Consensus size: 31
846939 AAGGAAAAGG
*
846949 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
846980 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
847011 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
847032 AAAAAGGTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:847999 original size:16 final size:16
Alignment explanation
Indices: 847980--848011 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
847970 TTCCTCTCTT
*
847980 TTTTTTTTCTTTTTTG
1 TTTTGTTTCTTTTTTG
847996 TTTTGTTTCTTTTTTG
1 TTTTGTTTCTTTTTTG
848012 GAAAAGAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.84
Consensus pattern (16 bp):
TTTTGTTTCTTTTTTG
Found at i:848267 original size:7 final size:7
Alignment explanation
Indices: 848249--848295 Score: 69
Period size: 7 Copynumber: 6.9 Consensus size: 7
848239 GCCTTTGCAC
848249 TTTT-TT
1 TTTTGTT
848255 TTTTGTT
1 TTTTGTT
*
848262 TGTTGTT
1 TTTTGTT
848269 TTTTGTT
1 TTTTGTT
*
848276 TTTTTTT
1 TTTTGTT
848283 TTTTGTT
1 TTTTGTT
848290 TTTTGT
1 TTTTGT
848296 GTTTACTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
6 4 0.11
7 32 0.89
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (7 bp):
TTTTGTT
Found at i:848305 original size:21 final size:21
Alignment explanation
Indices: 848264--848305 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
848254 TTTTTGTTTG
* **
848264 TTGTTTTTTGTTTTTTTTTTT
1 TTGTTTTTTGTGTTTACTTTT
848285 TTGTTTTTTGTGTTTACTTTT
1 TTGTTTTTTGTGTTTACTTTT
848306 GACTGTTCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.83
Consensus pattern (21 bp):
TTGTTTTTTGTGTTTACTTTT
Found at i:848305 original size:28 final size:28
Alignment explanation
Indices: 848249--848305 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
848239 GCCTTTGCAC
* **
848249 TTTTTTTTTTGTTTGTTGTTTTTTGTTT
1 TTTTTTTTTTGTTTGTTGTGTTTACTTT
*
848277 TTTTTTTTTTGTTTTTTGTGTTTACTTT
1 TTTTTTTTTTGTTTGTTGTGTTTACTTT
848305 T
1 T
848306 GACTGTTCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (28 bp):
TTTTTTTTTTGTTTGTTGTGTTTACTTT
Found at i:851970 original size:21 final size:21
Alignment explanation
Indices: 851946--851988 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
851936 ATCAAAATGA
*
851946 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACAAGATG
851967 CATTCATTGCATGACAAGATG
1 CATTCATTGCATGACAAGATG
851988 C
1 C
851989 TCCTGACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (21 bp):
CATTCATTGCATGACAAGATG
Found at i:855319 original size:52 final size:52
Alignment explanation
Indices: 855234--855410 Score: 309
Period size: 52 Copynumber: 3.4 Consensus size: 52
855224 ATATGAAAAG
* * *
855234 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCTTGAATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
855286 TTGCTTGAATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCTTGAATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
855338 TTGCTTGAATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCTTGAATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
* *
855390 TTGCCTGCATGTATCGATACA
1 TTGCTTGAATGTATCGATACA
855411 AAGATCAGTG
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 120 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37
Consensus pattern (52 bp):
TTGCTTGAATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
Found at i:855423 original size:104 final size:104
Alignment explanation
Indices: 855234--855430 Score: 297
Period size: 104 Copynumber: 1.9 Consensus size: 104
855224 ATATGAAAAG
* * *
855234 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCTTGAATGTA
1 TTGCTTGAATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGAATGTA
***
855299 TCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
66 TCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
* *
855338 TTGCTTGAATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
1 TTGCTTGAATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGAATGTA
*
855403 TCGATACA-AAGATCAGTGTATCGATACA
66 TCGATACATAAGAT-AATGTATCGATACA
855431 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
103 2 0.02
104 81 0.98
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36
Consensus pattern (104 bp):
TTGCTTGAATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGAATGTA
TCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
Found at i:855437 original size:13 final size:13
Alignment explanation
Indices: 855419--855443 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
855409 CAAAGATCAG
855419 TGTATCGATACAA
1 TGTATCGATACAA
855432 TGTATCGATACA
1 TGTATCGATACA
855444 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:855527 original size:13 final size:13
Alignment explanation
Indices: 855509--855533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
855499 AAAAAAAATA
855509 TGTATCGATACAT
1 TGTATCGATACAT
855522 TGTATCGATACA
1 TGTATCGATACA
855534 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:858189 original size:20 final size:20
Alignment explanation
Indices: 858146--858219 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
858136 GACATGGTCT
***
858146 TGTATCGATACATTTCAGACA
1 TGTATCGATACA-TTCACTTA
858167 TGTATCGATACATTCACTTA
1 TGTATCGATACATTCACTTA
**
858187 TGTATCGATACATGAACTTA
1 TGTATCGATACATTCACTTA
*
858207 TTGTATTGATACA
1 -TGTATCGATACA
858220 AAATGTAGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 23 0.50
21 23 0.50
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:859394 original size:23 final size:23
Alignment explanation
Indices: 859344--859399 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
859334 AGTATTACAG
859344 CTAAAAAAAATCAAAATAAAAGA
1 CTAAAAAAAATCAAAATAAAAGA
*
859367 ATAAAAAAAATTC-AAATAAAA-A
1 CTAAAAAAAA-TCAAAATAAAAGA
859389 CCTAAAAAAAA
1 -CTAAAAAAAA
859400 ATGTTCAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 1 0.03
23 26 0.90
24 2 0.07
ACGTcount: A:0.75, C:0.09, G:0.02, T:0.14
Consensus pattern (23 bp):
CTAAAAAAAATCAAAATAAAAGA
Found at i:860421 original size:40 final size:40
Alignment explanation
Indices: 860318--860422 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
860308 AAATTCGTTA
* * *
860318 ACTTGTAGGTTTTATCCCAGTTAA-CTTTCTCATATGATG
1 ACTTGTAGGTTTTATCCTAGTCAACCATTCTCATATGATG
* * *
860357 ACTTGTCA-GTTTTAT-CTCAATCAACCATTCTCATTTGTTG
1 ACTTGT-AGGTTTTATCCT-AGTCAACCATTCTCATATGATG
*
860397 ACTTATAGGTTTTATCCTAGTCAACC
1 ACTTGTAGGTTTTATCCTAGTCAACC
860423 TTTTAATTCA
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
38 1 0.02
39 18 0.34
40 32 0.60
41 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (40 bp):
ACTTGTAGGTTTTATCCTAGTCAACCATTCTCATATGATG
Found at i:860555 original size:79 final size:78
Alignment explanation
Indices: 860460--860768 Score: 204
Period size: 79 Copynumber: 3.9 Consensus size: 78
860450 TTTTTTATCA
860460 ATTGACTTG-ATAGTTTTGTCTCGATCAACTCTTTTCATTTGTTGACTTATAAGTTTCATCCTAG
1 ATTGACTTGTAT-GTTTTGTCTCGATCAAC-CTTTTCATTTGTTGACTTATAAGTTTCATCCTAG
860524 TCAACCTTTTAATTC
64 TCAACCTTTTAATTC
* * ** * *
860539 ATTGACTTGTATGTTTTGTCTC-AGTCAACCTTTCTCGA-CTGTTGATTTACGACTTT-ATCCCA
1 ATTGACTTGTATGTTTTGTCTCGA-TCAACCTTT-TC-ATTTGTTGACTTATAAGTTTCATCCTA
* * ** * *
860601 ATTAACCCTACTCATTT
63 GTCAA-CCTTTTAATTC
* * * * * * *
860618 ATTAAC-T-TATATATTGTCTCGATCAACCTTTTAACTTGTTGACTTGTCAA-TTTCAT-CTCGG
1 ATTGACTTGTATGTTTTGTCTCGATCAACCTTTTCATTTGTTGACTTAT-AAGTTTCATCCT-AG
* *
860679 TCAACCTTTTTTAGTC
64 TCAACC-TTTTAATTC
* * * * * * *
860695 ATTGACTTGTAAGTTTTGTCTTGGTCAACCCTTTTCATTTGTTGGCTTGTAAGATTCATCC-CGT
1 ATTGACTTGTATGTTTTGTCTCGATCAA-CCTTTTCATTTGTTGACTTATAAGTTTCATCCTAG-
860759 TCAACCTTTT
64 TCAACCTTTT
860769 CAACTTGTTG
Statistics
Matches: 172, Mismatches: 41, Indels: 34
0.70 0.17 0.14
Matches are distributed among these distances:
75 1 0.01
76 15 0.09
77 35 0.20
78 16 0.09
79 72 0.42
80 32 0.19
81 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (78 bp):
ATTGACTTGTATGTTTTGTCTCGATCAACCTTTTCATTTGTTGACTTATAAGTTTCATCCTAGTC
AACCTTTTAATTC
Found at i:860565 original size:39 final size:38
Alignment explanation
Indices: 860433--860571 Score: 104
Period size: 39 Copynumber: 3.5 Consensus size: 38
860423 TTTTAATTCA
* * *
860433 TTTTGTCTCAATCAGCCTTTTTTATCAATTGACTTG-ATAG
1 TTTTGTCTCAGTCAACCTTTTAT-TC-ATTGACTTGTAT-G
** * *
860473 TTTTGTCTC-GATCAACTCTTTTCATTTGTTGACTTATAAG
1 TTTTGTCTCAG-TCAAC-CTTTT-ATTCATTGACTTGTATG
**
860513 TTTCATC-CTAGTCAACCTTTTAATTCATTGACTTGTATG
1 TTTTGTCTC-AGTCAACCTTTT-ATTCATTGACTTGTATG
860552 TTTTGTCTCAGTCAACCTTT
1 TTTTGTCTCAGTCAACCTTT
860572 CTCGACTGTT
Statistics
Matches: 76, Mismatches: 16, Indels: 15
0.71 0.15 0.14
Matches are distributed among these distances:
39 35 0.46
40 32 0.42
41 8 0.11
42 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (38 bp):
TTTTGTCTCAGTCAACCTTTTATTCATTGACTTGTATG
Found at i:860744 original size:40 final size:39
Alignment explanation
Indices: 860640--860830 Score: 143
Period size: 40 Copynumber: 4.8 Consensus size: 39
860630 ATTGTCTCGA
* * *
860640 TCAACCTTTTAACTTGTTGACTTGTCAA-TTTCAT-CTCGG
1 TCAACCTTTTCATTTGTTGGCTTGT-AAGTTTCATCCT-GG
* * ** * ** *
860679 TCAACCTTTTTTAGTCATTGACTTGTAAGTTTTGTCTTGG
1 TCAACC-TTTTCATTTGTTGGCTTGTAAGTTTCATCCTGG
* * *
860719 TCAACCCTTTTCATTTGTTGGCTTGTAAGATTCATCCCGT
1 TCAA-CCTTTTCATTTGTTGGCTTGTAAGTTTCATCCTGG
* * * *
860759 TCAACCTTTTCAACTTGTTGACTTATAGGTTTCATCCTGG
1 TCAACCTTTTC-ATTTGTTGGCTTGTAAGTTTCATCCTGG
*
860799 TCAACCTTTCTCATTTGTTGGCTTGTCAGTTT
1 TCAACCTTT-TCATTTGTTGGCTTGTAAGTTT
860831 TATTCCATTC
Statistics
Matches: 116, Mismatches: 30, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
39 15 0.13
40 96 0.83
41 5 0.04
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (39 bp):
TCAACCTTTTCATTTGTTGGCTTGTAAGTTTCATCCTGG
Found at i:860780 original size:80 final size:80
Alignment explanation
Indices: 860696--860847 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
860686 TTTTTAGTCA
* ** * *
860696 TTGACTTGTAAGTTTTGTCTTGGTCAACCCTTT-TCATTTGTTGGCTTGTAAGATTCATCCCGTT
1 TTGACTTATAAGTTTCATCCTGGTCAA-CCTTTCTCATTTGTTGGCTTGTAAGATTCATCCCATT
860760 CAACCTTTTCAACTTG
65 CAACCTTTTCAACTTG
* * * * *
860776 TTGACTTATAGGTTTCATCCTGGTCAACCTTTCTCATTTGTTGGCTTGTCAGTTTTATTCCATTC
1 TTGACTTATAAGTTTCATCCTGGTCAACCTTTCTCATTTGTTGGCTTGTAAGATTCATCCCATTC
860841 AACCTTT
66 AACCTTT
860848 CTCATTCATT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
79 5 0.08
80 56 0.92
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (80 bp):
TTGACTTATAAGTTTCATCCTGGTCAACCTTTCTCATTTGTTGGCTTGTAAGATTCATCCCATTC
AACCTTTTCAACTTG
Done.