Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1234

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6364
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31


Found at i:422 original size:1 final size:1

Alignment explanation


    Indices: 418--470  Score: 70
    Period size: 1  Copynumber: 53.0  Consensus size: 1

        408 CTTTTCTCTC

                 *   *    *       *                              
        418 TTTTTCTTTGTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

        471 GAAGAGAAGG


Statistics
Matches: 44,  Mismatches: 8, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   1   44  1.00

ACGTcount: A:0.00, C:0.02, G:0.06, T:0.92


Consensus pattern (1 bp):   
T

Done.