Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1238
Parameters: 2 7 7 80 10 50 1000
Length:  43830

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4349--5546
62
19.3
62
78
7
1001
24
27
18
29
1.98
4348--5546
186
6.4
185
79
5
1189
24
27
18
29
1.98
5125--5396
123
2.2
124
77
6
275
28
26
17
27
1.98
5609--5692
13
5.5
13
68
28
51
35
16
13
34
1.88
5617--5679
19
3.7
18
74
24
64
36
15
12
34
1.86
5609--5694
32
2.7
32
94
0
154
37
16
12
33
1.87
15837--15879
13
3.3
13
87
9
61
51
2
0
46
1.13
15866--15904
20
1.9
21
94
5
71
43
0
0
56
0.99
16061--16090
6
5.0
6
100
0
60
16
0
0
83
0.65
16269--16317
5
10.2
5
79
16
50
42
2
0
55
1.11
16275--16318
15
3.0
15
80
12
56
47
0
0
52
1.00
16275--16321
23
2.0
24
92
8
80
48
0
0
51
1.00
16326--16377
26
2.0
27
82
17
65
34
0
0
65
0.93
16327--16391
22
2.8
23
77
15
71
32
0
0
67
0.91
17254--17287
2
17.0
2
93
0
59
52
0
0
47
1.00
19804--19862
26
2.4
23
74
20
57
54
0
0
45
0.99
19832--19897
26
2.5
28
76
18
70
48
0
0
51
1.00
19857--19895
9
4.2
9
83
6
51
46
0
0
53
1.00
19832--19897
14
4.9
15
70
18
56
48
0
0
51
1.00
19808--19923
23
5.0
23
76
11
85
50
0
0
49
1.06
19981--20027
24
2.0
24
83
8
60
40
10
2
46
1.50
20962--21062
17
6.2
17
68
21
65
47
0
0
51
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21031--21070
19
2.2
18
86
4
53
52
0
2
45
1.14
21578--21613
17
2.1
17
89
0
54
61
0
0
38
0.96
22778--22817
19
2.1
19
86
9
55
32
0
0
67
0.91
22777--22824
17
2.6
19
77
12
55
37
0
0
62
0.95
22825--22876
19
2.7
20
82
8
72
50
0
0
50
1.00
26028--26090
26
2.5
25
76
14
67
50
4
0
44
1.23
26038--26097
26
2.3
26
82
5
68
53
3
0
43
1.17
26373--26411
2
19.5
2
94
0
69
48
2
0
48
1.15
26584--26627
23
2.0
22
86
13
63
52
0
2
45
1.13
29938--29982
22
2.0
23
87
12
67
51
2
0
46
1.13
30078--30135
30
2.0
30
86
10
84
46
3
1
48
1.29
30502--30532
3
10.7
3
93
6
55
32
0
0
67
0.91
31102--31151
24
2.0
24
88
3
73
34
0
4
62
1.14
31601--31626
8
3.2
8
100
0
52
88
0
0
11
0.52
39744--39769
13
2.0
13
100
0
52
38
15
15
30
1.88
39818--39872
19
2.8
19
78
8
65
30
16
14
38
1.89
40300--40350
21
2.5
20
87
12
68
45
0
0
54
0.99
40473--40521
3
16.0
3
87
4
71
30
2
2
65
1.15
40750--40796
19
2.4
20
82
3
60
55
0
0
44
0.99
40827--40863
16
2.2
18
85
9
51
37
2
2
56
1.28
40866--40905
11
3.8
11
81
18
50
35
0
0
65
0.93

Tables:   1

The End!