genome.fa.s1239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1239
Parameters: 2 7 7 80 10 50 1000
Length:  27323

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4013--4041	14	2.0	15	93	6	51	55	0	0	44	0.99
4634--4676	6	7.2	6	94	0	77	81	0	0	18	0.69
5037--5127	25	4.1	22	68	22	57	41	0	2	56	1.12
5973--6018	12	3.8	12	83	8	58	54	2	0	43	1.12
7593--7618	13	2.0	13	100	0	52	30	15	15	38	1.88
7573--7643	19	4.0	18	72	25	53	26	12	21	39	1.89
9960--10006	21	2.3	21	82	10	62	44	4	19	31	1.70
10127--10167	13	3.2	13	100	0	82	36	14	17	31	1.90
10151--10189	20	2.0	20	94	0	69	46	10	15	28	1.78
12237--12266	15	2.0	15	93	0	51	13	13	16	56	1.67
16344--16368	13	1.9	13	100	0	50	36	16	16	32	1.90
16321--16388	32	2.1	32	86	8	93	32	14	17	35	1.91
16324--16394	19	4.0	18	72	25	53	28	12	21	38	1.90
17217--17293	32	2.4	32	80	0	91	41	16	2	38	1.63
17246--17300	18	3.1	18	78	0	56	41	16	1	40	1.59
17710--17741	13	2.3	15	89	10	50	28	6	6	59	1.46
19189--19230	22	1.9	22	85	9	59	23	16	11	47	1.80
20825--20867	22	2.0	22	95	0	77	27	20	13	37	1.91
21308--21374	36	1.9	36	85	11	95	31	8	26	32	1.87
22901--23061	84	1.9	84	82	7	202	53	3	18	25	1.59
27118--27241	52	2.4	51	94	1	212	28	17	18	35	1.94
27118--27261	52	2.8	51	88	5	202	29	17	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27250--27274	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1

The End!