Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold124
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1034113
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 4 of 7
Found at i:433792 original size:52 final size:52
Alignment explanation
Indices: 433722--433842 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
433712 GAAAATTTAT
*
433722 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGC
* * *
433774 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCATATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGC
433826 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
433843 AAGATCGGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGC
Found at i:433855 original size:52 final size:52
Alignment explanation
Indices: 433722--433862 Score: 178
Period size: 52 Copynumber: 2.7 Consensus size: 52
433712 GAAAATTTAT
*
433722 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTAGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTAGGCAAATTTGC
*** * * *
433774 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCATATTTGC
1 CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTAGGCAAATTTGC
*
433826 CTGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 CTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
433863 ATGTATCGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 4 0.05
52 74 0.95
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTAGGCAAATTTGC
Found at i:433869 original size:13 final size:13
Alignment explanation
Indices: 433851--433875 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
433841 CAAAGATCGG
433851 TGTATCGATACAA
1 TGTATCGATACAA
433864 TGTATCGATACA
1 TGTATCGATACA
433876 TTTTTTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:433952 original size:33 final size:33
Alignment explanation
Indices: 433895--433961 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
433885 AGTAGCTTAA
*
433895 ATTGTATCGATACAAAAAAATATGTATTGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
433928 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
433961 A
1 A
433962 AGTCATTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:434024 original size:21 final size:20
Alignment explanation
Indices: 433998--434067 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 20
433988 CGTTGGGACT
433998 TGTATCGATACATTCTAACAA
1 TGTATCGATACATT-TAACAA
*
434019 TGTATCGATACATTTGGACAAAAA
1 TGTATCGATACATTT----AACAA
*
434043 TATATCGATACATTATAACAA
1 TGTATCGATACATT-TAACAA
434064 TGTA
1 TGTA
434068 AGAGAATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
20 1 0.03
21 21 0.52
24 17 0.43
25 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATTTAACAA
Found at i:434063 original size:24 final size:22
Alignment explanation
Indices: 434000--434063 Score: 60
Period size: 24 Copynumber: 2.8 Consensus size: 22
433990 TTGGGACTTG
*
434000 TATCGATACATTCTAAC--AATG
1 TATCGATACATT-TAACAAAATA
*
434021 TATCGATACATTTGGACAAAAATA
1 TATCGATACATTT-AAC-AAAATA
434045 TATCGATACATTATAACAA
1 TATCGATACATT-TAACAA
434064 TGTAAGAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
20 1 0.03
21 14 0.40
23 2 0.06
24 17 0.49
25 1 0.03
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (22 bp):
TATCGATACATTTAACAAAATA
Found at i:443737 original size:9 final size:9
Alignment explanation
Indices: 443719--443761 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
443709 AGTCAAAAGT
*
443719 AAAAACACA
1 AAAAAAACA
443728 AAAAAAACA
1 AAAAAAACA
443737 AACAAAAACA
1 AA-AAAAACA
443747 AAAAAAA-A
1 AAAAAAACA
443755 AAAAAAA
1 AAAAAAA
443762 AACTCACAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
8 8 0.25
9 15 0.47
10 9 0.28
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:443743 original size:10 final size:10
Alignment explanation
Indices: 443719--443764 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
443709 AGTCAAAAGT
443719 AAAAACACAAA
1 AAAAACA-AAA
*
443730 AAAAACAAAC
1 AAAAACAAAA
443740 AAAAACAAAA
1 AAAAACAAAA
443750 AAAAA-AAAA
1 AAAAACAAAA
443759 AAAAAC
1 AAAAAC
443765 TCACAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
9 9 0.28
10 16 0.50
11 7 0.22
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:443743 original size:21 final size:20
Alignment explanation
Indices: 443719--443777 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
443709 AGTCAAAAGT
*
443719 AAAAACACAAAAAAAACAAAC
1 AAAAACACAAAAAAAA-AAAA
443740 AAAAACA-AAAAAAAAAAAA
1 AAAAACACAAAAAAAAAAAA
443759 AAAAACTCACAAAAAAAAA
1 AAAAA--CACAAAAAAAAA
443778 GAGTGCAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
19 8 0.24
20 8 0.24
21 9 0.26
22 9 0.26
ACGTcount: A:0.85, C:0.14, G:0.00, T:0.02
Consensus pattern (20 bp):
AAAAACACAAAAAAAAAAAA
Found at i:443749 original size:19 final size:19
Alignment explanation
Indices: 443719--443764 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
443709 AGTCAAAAGT
* *
443719 AAAAACACAAAAAAAACAA
1 AAAAAAACAAAAAAAAAAA
*
443738 ACAAAAACAAAAAAAAAAA
1 AAAAAAACAAAAAAAAAAA
443757 AAAAAAAC
1 AAAAAAAC
443765 TCACAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAAACAAAAAAAAAAA
Found at i:444052 original size:20 final size:19
Alignment explanation
Indices: 444022--444059 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
444012 TTCCCTAACA
*
444022 CAAAAAAAAAAGAGAAAAC
1 CAAAAAAAAAACAGAAAAC
444041 CAAAAAACAAAACAGAAAA
1 CAAAAAA-AAAACAGAAAA
444060 TCTCGGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.79, C:0.13, G:0.08, T:0.00
Consensus pattern (19 bp):
CAAAAAAAAAACAGAAAAC
Found at i:445130 original size:30 final size:30
Alignment explanation
Indices: 445053--445268 Score: 193
Period size: 30 Copynumber: 7.0 Consensus size: 30
445043 TCTTTAAATC
* * *
445053 TCTCTTCTCGAAGTCCACGACTCAGTGGTA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* *
445083 TCTTTTCTTCAAAGTCCACAACTCAGTGGCA
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGCA
* *
445114 TCTCTTTTCTAAGTCCACGACTCATTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * *
445144 TCTATTTTCTAAGTCCACGACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * *
445174 TCT-TGTCTCAAAGGCCACAACTCAGTGGCAA
1 TCTCT-TTTCAAAGTCCACGACTCAGTGGC-A
* *
445205 TCTC-TTCCAAAAGTCCACGACTCTGTGGCACA
1 TCTCTTTTC-AAAGTCCACGACTCAGTGG--CA
* *
445237 TTTTTCTTTTCAAAGTCCACGACTCTGTGGCA
1 --TCTCTTTTCAAAGTCCACGACTCAGTGGCA
445269 CCTTGTTCCT
Statistics
Matches: 152, Mismatches: 24, Indels: 18
0.78 0.12 0.09
Matches are distributed among these distances:
29 1 0.01
30 77 0.51
31 45 0.30
32 3 0.02
33 1 0.01
34 22 0.14
35 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (30 bp):
TCTCTTTTCAAAGTCCACGACTCAGTGGCA
Found at i:445197 original size:60 final size:61
Alignment explanation
Indices: 445053--445301 Score: 191
Period size: 61 Copynumber: 4.0 Consensus size: 61
445043 TCTTTAAATC
* * *
445053 TCTCTTCTCGAAGTCCACGACTCAGTGGTATCTTTTCTTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTATTCTTCAAAGTCCACAACTCAGTGGCA
* * * * * *
445114 TCTCTTTTCTAAGTCCACGACTCATTGGCATCTATT-TTCTAAGTCCACGACTTAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTATTCTTCAAAGTCCACAACTCAGTGGCA
* * * * *
445174 TCT-TGTCTCAAAGGCCACAACTCAGTGGCAATCTCTTC--CAAAAGTCCACGACTCTGTGGCAC
1 TCTCT-TCTCAAAGTCCACGACTCAGTGGC-ATCTATTCTTC-AAAGTCCACAACTCAGTGG--C
445236 A
61 A
* * * * * ** *
445237 TTTTTCTTTTCAAAGTCCACGACTCTGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
1 --TCTCTTCTCAAAGTCCACGACTCAGTGGCATC-TATT-CTTCAAAGTCCACAACTCAGTGGCA
445302 CTTTTTTTTT
Statistics
Matches: 147, Mismatches: 28, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
59 1 0.01
60 44 0.30
61 53 0.36
63 2 0.01
64 2 0.01
65 27 0.18
66 2 0.01
67 16 0.11
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.32
Consensus pattern (61 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTATTCTTCAAAGTCCACAACTCAGTGGCA
Found at i:445253 original size:34 final size:33
Alignment explanation
Indices: 445214--446384 Score: 814
Period size: 34 Copynumber: 35.8 Consensus size: 33
445204 ATCTCTTCCA
* * *
445214 AAAGTCCACGACTCTGTGGCACATTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
445247 CAAAGTCCACGACTCTGTGGCACCTTGTTCCTTTT
1 -AAAGTCCACAACTCCGTGGCACCTT-TTTCTTTT
445282 -AAGTCCACAACTCCGTGGCA-CTTTTT-TTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
445312 TAAGTCTATAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* *
445346 AAAGCCCACAACTTCGTGGCACTCTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
*
445381 -AAGTCCACAACTCCGTGGCA-CATTTTCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
445412 -ATGTCCACAACTTCGTGGCA-----TCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
445439 -AAGCCCACAACTCCATGGCACTTTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* * *
445473 -AAGCCCACAACTCCGTGACATTCTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCA-CCTTTTT-CTTTT
* ** **
445507 -AAGTCCACAACTTCGTGATATTTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
*
445540 -AAGTCCATAACTCCGTGGCACTCTTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTTCTTTT
* *
445573 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* *
445608 -AAGTCCACAACTCTGTGGTACC-----CTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
*
445635 -AAG-CTCACAACTCGGTGGCACTCTTTTTCCTTTT
1 AAAGTC-CACAACTCCGTGGCAC-CTTTTT-CTTTT
*
445669 -AAGTCCACAACTCCGTGGCACC-----CTTGT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
445696 -AAGTCGACAACTCCATAGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
*
445729 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
*
445764 -AAGTCCACAACTCTGTGGCACC-----CTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
445791 -AAGTCCACAACTCCCTGGTACCTTGTTCTTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * * ** *
445824 AAAGCCCATAACACTATGGCATCTTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * * * *
445857 TAAGTCCATAACTTCGCGGCACCTTGTTCTTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* *
445891 AAAGCCCACAACTCCGTGGCATCTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
*
445925 -AAGTCCACAACTCCGTGGCACTTTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * * *
445957 TAAGTCCACGATTCCGTGGCACCCTTTTCCCTTTT
1 AAAGTCCACAACTCCGTGGCA-CCTTTT-TCTTTT
* * * *
445992 -AAGTCCACGACTCTGTGCCATCTTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
446024 TAAGTCCACGACTCCGTGGCACATTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* **
446057 TAAGTCCACAACTCCGTGGCACCCTGTTCCCTTTT
1 AAAGTCCACAACTCCGTGGCA-CCT-TTTTCTTTT
* * *
446092 -AAGTCCACGACTCTGTGGCATCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* **
446125 TAAGTCCACAACTCCGTGGCACC-TAATCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* ** * *
446157 TAAGTCCATGACTCCGTGGCGCCCTTTTCCCTTTT
1 AAAGTCCACAACTCCGTGGC-ACCTTTT-TCTTTT
* * *
446192 -AAGCCCACACCTCCGTGGCATCCCTTTTTCCTTT
1 AAAGTCCACAACTCCGTGGCA--CCTTTTTCTTTT
* ** *
446226 -AAGTCCACGACTCAATGGCATCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* *
446259 TAAGTCCACAACTCTGTGGCACC-TTTTCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* *
446291 TAAGTCCACGACTCCGTGGCACCTTTTTCCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTT--CTTTT
* * * * *
446326 -AAGCCCACACCTCTGTGGCATCCCTTTTTCCTGT
1 AAAGTCCACAACTCCGTGGCA--CCTTTTTCTTTT
* *
446360 -AAGTTCATAACTCCGTGGCACCTTT
1 AAAGTCCACAACTCCGTGGCACCTTT
446385 AAGTCCAATA
Statistics
Matches: 922, Mismatches: 150, Indels: 132
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.00
27 91 0.10
28 1 0.00
30 4 0.00
31 43 0.05
32 88 0.10
33 204 0.22
34 419 0.45
35 62 0.07
36 9 0.01
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (33 bp):
AAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:445300 original size:67 final size:64
Alignment explanation
Indices: 445215--446384 Score: 915
Period size: 67 Copynumber: 17.9 Consensus size: 64
445205 TCTCTTCCAA
* * * * *
445215 AAGTCCACGACTCTGTGGCACATTTTTCTTTTCAAAGTCCACGACTCTGTGGCACCTTGTTCCTT
1 AAGTCCACAACTCCGTGGCAC-TTTTTCTTTT--AAGTCCACAACTCCGTGGCACCTTTTTCCTT
445280 TT
63 TT
* * * *
445282 AAGTCCACAACTCCGTGGCACTTTTTTTTTTAAGTCTATAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACTTTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
445346 AAAGCCCACAACTTCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-CATTTT-CT
1 -AAGTCCACAACTCCGTGGCA--CTTTTT-CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCT
445409 TTT
62 TTT
* * * * * *
445412 ATGTCCACAACTTCGTGGCA----TCCTTTTAAGCCCACAACTCCATGGCACTTTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACTTTTTCTTTTAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * * ** **
445473 AAGCCCACAACTCCGTGACATTCTTTTTCCTTTTAAGTCCACAACTTCGTGATATTTTTTTCCTT
1 AAGTCCACAACTCCGTGGCA--CTTTTT-CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTT
445538 TT
63 TT
* *
445540 AAGTCCATAACTCCGTGGCACTCTTTTTCTTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCA--CTTTTTC-TTTTAAGTCCACAACTCCGTGGCAC-CTTTTTCCT
445605 TTT
62 TTT
* * * *
445608 AAGTCCACAACTCTGTGGTAC----CCTTTTAAG-CTCACAACTCGGTGGCACTCTTTTTCCTTT
1 AAGTCCACAACTCCGTGGCACTTTTTCTTTTAAGTC-CACAACTCCGTGGCAC-CTTTTTCCTTT
445668 T
64 T
* * * * * *
445669 AAGTCCACAACTCCGTGGCAC----CCTTGTAAGTCGACAACTCCATAGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACTTTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
445729 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-C-----CCT
1 -AAGTCCACAACTCCGTGGCA--CTTTTT-CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCT
445788 TTT
62 TTT
* * * * * * ** * *
445791 AAGTCCACAACTCCCTGGTACCTTGTTCTTTTTAAAGCCCATAACACTATGGCATCTTTTTCTTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTC-TTTT-AAGTCCACAACTCCGTGGCACCTTTTTCCTT
445856 TT
63 TT
* * * * * *
445858 AAGTCCATAACTTCGCGGCACCTTGTTCTTTTTAAAGCCCACAACTCCGTGGCATCTTTTTCCTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTC-TTTT-AAGTCCACAACTCCGTGGCACCTTTTTCCTT
445923 TT
63 TT
* * *
445925 AAGTCCACAACTCCGTGGCACTTTTTTCTTTTTAAGTCCACGATTCCGTGGCACCCTTTTCCCTT
1 AAGTCCACAACTCCGTGGCAC-TTTTTC-TTTTAAGTCCACAACTCCGTGGCA-CCTTTTTCCTT
445990 TT
63 TT
* * * * * *
445992 AAGTCCACGACTCTGTGCCATCTTTTTCTTTTTAAGTCCACGACTCCGTGGCACATTTTTCTTTT
1 AAGTCCACAACTCCGTGGCA-CTTTTTC-TTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
446057 T
64 T
** * * * *
446058 AAGTCCACAACTCCGTGGCACCCTGTTCCCTTTTAAGTCCACGACTCTGTGGCATCTTTTTCTTT
1 AAGTCCACAACTCCGTGGCA--CT-TTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTC-CT
446123 TTT
62 TTT
* ** ** * *
446126 AAGTCCACAACTCCGTGGCACCTAATCTTTTTAAGTCCATGACTCCGTGGCGCCCTTTTCCCTTT
1 AAGTCCACAACTCCGTGGCACTTTTTC-TTTTAAGTCCACAACTCCGTGGC-ACCTTTTTCCTTT
446191 T
64 T
* * * * ** * *
446192 AAGCCCACACCTCCGTGGCATCCCTTTTTCCTTTAAGTCCACGACTCAATGGCATCTTTTTCTTT
1 AAGTCCACAACTCCGTGGCA---CTTTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTC-CT
446257 TTT
62 TTT
* * *
446260 AAGTCCACAACTCTGTGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCACCTTTTTCCCTTT
1 AAGTCCACAACTCCGTGGCACTTTTTC-TTTTAAGTCCACAACTCCGTGGCACCTTTTT-CCTTT
446325 T
64 T
* * * * * * *
446326 AAGCCCACACCTCTGTGGCATCCCTTTTTCCTGTAAGTTCATAACTCCGTGGCACCTTT
1 AAGTCCACAACTCCGTGGCA---CTTTTTCTTTTAAGTCCACAACTCCGTGGCACCTTT
446385 AAGTCCAATA
Statistics
Matches: 902, Mismatches: 150, Indels: 101
0.78 0.13 0.09
Matches are distributed among these distances:
58 23 0.03
59 2 0.00
60 25 0.03
61 147 0.16
62 8 0.01
63 1 0.00
64 27 0.03
65 44 0.05
66 153 0.17
67 279 0.31
68 183 0.20
69 10 0.01
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (64 bp):
AAGTCCACAACTCCGTGGCACTTTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:445951 original size:100 final size:99
Alignment explanation
Indices: 445215--446384 Score: 1026
Period size: 100 Copynumber: 11.9 Consensus size: 99
445205 TCTCTTCCAA
* * * * *
445215 AAGTCCACGACTCTGTGGCA-CATTTTT-CTTTTCAAAGTCCACGACTCTGTGGCAC-CTTGTTC
1 AAGTCCACAACTCCGTGGCATC-TTTTTCCTTTT--AAGTCCACAACTCCGTGGCACTCTTTTTC
* **
445277 CTTTTAAGTCCACAACTCCGTGGCA-CTTTTTTTTTT
63 TTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * * * * * *
445313 AAGTCTATAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTTCGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTTCTT
*
445378 TTTAAGTCCACAACTCCGTGGCACATTTT-CTTTT
65 TTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * * * * *
445412 ATGTCCACAACTTCGTGGCA------TCCTTTTAAGCCCACAACTCCATGGCACTTTTTTTCCTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCTTT
* * *
445471 TTAAGCCCACAACTCCGTGACATTCTTTTTCCTTTT
66 TTAAGTCCACAACTCCGTGGCA--CCTTTTCCTTTT
* ** * *
445507 AAGTCCACAACTTCGTGATATTTTTTTCCTTTTAAGTCCATAACTCCGTGGCACTCTTTTTCTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCTTT
*
445572 TTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
66 TTAAGTCCACAACTCCGTGGCAC-C-TTTTCCTTTT
* * * *
445608 AAGTCCACAACTCTGTGGTA-C-----CCTTTTAAG-CTCACAACTCGGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTC-CACAACTCCGTGGCACTCTTTTTCTT
*
445666 TTTAAGTCCACAACTCCGTGGCA-C----CCTTGT
65 TTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * * * * * *
445696 AAGTCGACAACTCCATAGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTTCTT
*
445761 TTTAAGTCCACAACTCTGTGGCA-C----CCTTTT
65 TTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * * * * * * * **
445791 AAGTCCACAACTCCCTGGTACCTTGTTCTTTTTAAAGCCCATAACACTATGGCA-TCTTTTTCTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTTCTT
* * * *
445855 TTTAAGTCCATAACTTCGCGGCACCTTGTTCTTTTT
65 TTTAAGTCCACAACTCCGTGGCACCTT-TTCCTTTT
*
445891 AAAGCCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACT-TTTTTCTT
1 -AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCTT
* *
445955 TTTAAGTCCACGATTCCGTGGCACCCTTTTCCCTTTT
65 TTTAAGTCCACAACTCCGTGGCA-CCTTTT-CCTTTT
* * * * * *
445992 AAGTCCACGACTCTGTGCCATCTTTTTCTTTTTAAGTCCACGACTCCGTGGCAC-ATTTTTCTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCTTT
*
446056 TTAAGTCCACAACTCCGTGGCACCCTGTTCCCTTTT
66 TTAAGTCCACAACTCCGTGGCA-CCT-TTTCCTTTT
* * * **
446092 AAGTCCACGACTCTGTGGCATCTTTTTCTTTTTTAAGTCCACAACTCCGTGGCAC-C-TAATCTT
1 AAGTCCACAACTCCGTGGCATCTTTTTC-CTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCTT
** *
446155 TTTAAGTCCATGACTCCGTGGCGCCCTTTTCCCTTTT
65 TTTAAGTCCACAACTCCGTGGC-ACCTTTT-CCTTTT
* * * **
446192 AAGCCCACACCTCCGTGGCATCCCTTTTTCC-TTTAAGTCCACGACTCAATGGCA-TCTTTTTCT
1 AAGTCCACAACTCCGTGGCAT--CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTC-
* *
446255 TTTTTAAGTCCACAACTCTGTGGCACCTTTTCTTTTT
63 TTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * * * * *
446292 AAGTCCACGACTCCGTGGCACCTTTTTCCCTTTTAAGCCCACACCTCTGTGGCATCCCTTTTTC-
1 AAGTCCACAACTCCGTGGCATCTTTTT-CCTTTTAAGTCCACAACTCCGTGGCA-CTCTTTTTCT
* * * *
446356 CTGTAAGTTCATAACTCCGTGGCACCTTT
64 TTTTAAGTCCACAACTCCGTGGCACCTTT
446385 AAGTCCAATA
Statistics
Matches: 893, Mismatches: 131, Indels: 94
0.80 0.12 0.08
Matches are distributed among these distances:
88 20 0.02
89 1 0.00
92 49 0.05
93 7 0.01
94 39 0.04
95 178 0.20
96 1 0.00
98 45 0.05
99 61 0.07
100 302 0.34
101 155 0.17
102 35 0.04
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (99 bp):
AAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCTTT
TTAAGTCCACAACTCCGTGGCACCTTTTCCTTTT
Found at i:446462 original size:51 final size:48
Alignment explanation
Indices: 446381--447154 Score: 364
Period size: 48 Copynumber: 16.8 Consensus size: 48
446371 TCCGTGGCAC
*
446381 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGAACCTT-T
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * * *
446428 ACCATCTTGAGTCCAATATCGCTGGCCTTGAATCAGCGTATTAGTACCTTGT
1 --C-T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * *
446480 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGG---C---A
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* *
446522 C---AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * * * * * *
446567 CTCTAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGG---CATG-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * * * * * * *
446611 -----AGTCCAATATCACTGGCATTGAATCAACGTTTTGGCACATTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
** * * * *
446654 CTTTAAAACCAATGTCGTTGGCCTTGAATCAGC--A----CA-CTAG-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * *
446694 C-GTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * * * * *
446741 CTCTAAGACCAATGTTGCTGGCCTTAAATCAGCACATT-G------G-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * * * *
446781 C-ATAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * *
446828 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGG---C---A
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
* * * *
446870 C---AAGCCCAATATCGCTGGCCTTGAATCATCATATTGGCACCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTT-GT
* * * ** * * *
446916 CTTTAAGACCGATGTCATTGGCCTTGAATCAGCACATTGGCACCTTAACCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTT----GT
* * * * * *
446968 CTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCATCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTT-GT
** * * *
447017 CTTTAAGTCCGGTGTCGCTGGCCTTGAATAAGCATATT-GACACCGTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGA-ACC-TTGT
* * * * * *
447066 CTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGTACCTTCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTT-GT
** * * *
447115 CTTTAAGTCTGATATTGTTGCCCTTGAATCAGCATATTGG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
447155 CATCTTTAAC
Statistics
Matches: 562, Mismatches: 107, Indels: 112
0.72 0.14 0.14
Matches are distributed among these distances:
39 147 0.26
40 3 0.01
41 3 0.01
42 7 0.01
45 8 0.01
46 5 0.01
47 3 0.01
48 152 0.27
49 146 0.26
50 5 0.01
51 39 0.07
52 44 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (48 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGT
Found at i:446542 original size:39 final size:39
Alignment explanation
Indices: 446488--446909 Score: 232
Period size: 39 Copynumber: 9.9 Consensus size: 39
446478 GTCTTTAAGA
*
446488 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
446527 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA--------C-AAGC
* * * * ** *
446575 CCAATGTTGTTGGCCTTGAATCAGCACATTGGCATGAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
* * * * * *
446614 CCAATATCACTGGCATTGAATCAACGTTTTGGCACATTATC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACA--AGC
* * * * * **
446655 TTTAAAACCAATGTCGTTGGCCTTGAATCAGCACACTAGCGTAAGC
1 -------CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
446701 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA--------C-AAGC
* * * * *
446749 CCAATGTTGCTGGCCTTAAATCAGCACATTGGCATAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
* *
446788 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGCCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA------C---AAGC
*
446836 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
446875 CCAATATCGCTGGCCTTGAATCATCATATTGGCAC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
446910 CTTCATCTTT
Statistics
Matches: 286, Mismatches: 61, Indels: 72
0.68 0.15 0.17
Matches are distributed among these distances:
39 156 0.55
41 1 0.00
42 1 0.00
46 2 0.01
47 1 0.00
48 125 0.44
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
Found at i:446589 original size:87 final size:87
Alignment explanation
Indices: 446440--446958 Score: 714
Period size: 87 Copynumber: 6.0 Consensus size: 87
446430 CATCTTGAGT
* * *
446440 CCAATATCGCTGGCCTTGAATCAGCGTATTAGTACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
*
446505 GAATCAGCATATTGGCACAAGC
66 GAATCAGCACATTGGCACAAGC
* * *
446527 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGTTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
** *
446592 GAATCAGCACATTGGCATGAGT
66 GAATCAGCACATTGGCACAAGC
* * * * * * * * *
446614 CCAATATCACTGGCATTGAATCAACGTTTTGGCACATTATCTTTAAAACCAATGTCGTTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
* * **
446679 GAATCAGCACACTAGCGTAAGC
66 GAATCAGCACATTGGCACAAGC
* *
446701 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
* *
446766 AAATCAGCACATTGGCATAAGC
66 GAATCAGCACATTGGCACAAGC
* *
446788 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGCCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
*
446853 GAATCAGCATATTGGCACAAGC
66 GAATCAGCACATTGGCACAAGC
* * * **
446875 CCAATATCGCTGGCCTTGAATCATCATATTGGCACCTTCATCTTTAAGACCGATGTCATTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGCTGGCCT
446940 TGAATCAGCACATTGGCAC
65 TGAATCAGCACATTGGCAC
446959 CTTAACCATC
Statistics
Matches: 376, Mismatches: 55, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
87 337 0.90
88 39 0.10
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (87 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
GAATCAGCACATTGGCACAAGC
Found at i:446725 original size:174 final size:174
Alignment explanation
Indices: 446435--446957 Score: 794
Period size: 174 Copynumber: 3.0 Consensus size: 174
446425 TTTACCATCT
* * *
446435 TGAGTCCAATATCGCTGGCCTTGAATCAGCGTATTAGTACCTTGTCTTTAAGACCAATGTCGCTG
1 TGAGTCCAATATCACTGGCCTTGAATCAGCGTATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
446500 GCCTTGAATCAGCATATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
66 GCCTTGAATCAGCATATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
446565 GTCTCTAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGGCA
131 GTCTCTAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGGCA
* * * * * * *
446609 TGAGTCCAATATCACTGGCATTGAATCAACGTTTTGGCACATTATCTTTAAAACCAATGTCGTTG
1 TGAGTCCAATATCACTGGCCTTGAATCAGCGTATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
* * * **
446674 GCCTTGAATCAGCACACTAGCGTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
66 GCCTTGAATCAGCATATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
* *
446739 GTCTCTAAGACCAATGTTGCTGGCCTTAAATCAGCACATTGGCA
131 GTCTCTAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGGCA
* * * *
446783 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGCCTTTAAGACCAATGTCGCTG
1 TGAGTCCAATATCACTGGCCTTGAATCAGCGTATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
*
446848 GCCTTGAATCAGCATATTGGCACAAGCCCAATATCGCTGGCCTTGAATCATCATATTGGCACCTT
66 GCCTTGAATCAGCATATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
* * * **
446913 CATCTTTAAGACCGATGTCATTGGCCTTGAATCAGCACATTGGCA
131 -GTCTCTAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGGCA
446958 CCTTAACCAT
Statistics
Matches: 307, Mismatches: 41, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
174 270 0.88
175 37 0.12
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (174 bp):
TGAGTCCAATATCACTGGCCTTGAATCAGCGTATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCATATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
GTCTCTAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGGCA
Found at i:446957 original size:49 final size:49
Alignment explanation
Indices: 446885--447156 Score: 303
Period size: 49 Copynumber: 5.5 Consensus size: 49
446875 CCAATATCGC
* * * *
446885 TGGCCTTGAATCATCATATTGGCACCTTCATCTTTAAGACCGATGTCAT
1 TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATGTCGT
* *
446934 TGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAGTCCAATGTCGC
1 TGGCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGTCCGATGTCGT
* * * *
446986 TGACCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCGGTGTCGC
1 TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATGTCGT
* * * * *
447035 TGGCCTTGAATAAGCATATTGACACCGTT-ATCTTTAAGACCAATGTCGT
1 TGGCCTTGAATCAGCACATTGGCACC-TTCATCTTTAAGTCCGATGTCGT
* * * * *
447084 TGGCCTTGAATCAGCACATTGGTACCTTCTTCTTTAAGTCTGATATTGT
1 TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATGTCGT
* *
447133 TGCCCTTGAATCAGCATATTGGCA
1 TGGCCTTGAATCAGCACATTGGCA
447157 TCTTTAACAT
Statistics
Matches: 186, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
48 2 0.01
49 139 0.75
50 2 0.01
52 43 0.23
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (49 bp):
TGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATGTCGT
Found at i:447190 original size:150 final size:148
Alignment explanation
Indices: 446871--447160 Score: 377
Period size: 150 Copynumber: 2.0 Consensus size: 148
446861 ATATTGGCAC
* * * * *
446871 AAGCCCAATATCGCTGGCCTTGAATCATCATATTGGCACCTTCATCTTTAAGACCGATGTCATTG
1 AAGCCCAATGTCGCTGGCCTTGAATAAGCATATTGACACCTTCATCTTTAAGACCAATGTCATTG
*
446936 GCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAGTCCAATGTCGCTGACCTTGAATCAGC
66 GCCTTGAATCAGCACATTGGCACCTT-A-CATCTTTAAGTCCAATATCGCTGACCTTGAATCAGC
447001 ACATTGGCATCTTCATCTTT
129 ACATTGGCATCTTCATCTTT
* ** *
447021 AAGTCCGGTGTCGCTGGCCTTGAATAAGCATATTGACACCGTT-ATCTTTAAGACCAATGTCGTT
1 AAGCCCAATGTCGCTGGCCTTGAATAAGCATATTGACACC-TTCATCTTTAAGACCAATGTCATT
* * ** * * *
447085 GGCCTTGAATCAGCACATTGGTACCTT-CTTCTTTAAGTCTGATATTGTTGCCCTTGAATCAGCA
65 GGCCTTGAATCAGCACATTGGCACCTTACATCTTTAAGTCCAATATCGCTGACCTTGAATCAGCA
*
447149 TATTGGCATCTT
130 CATTGGCATCTT
447161 TAACATTTCT
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
147 41 0.34
150 78 0.64
151 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (148 bp):
AAGCCCAATGTCGCTGGCCTTGAATAAGCATATTGACACCTTCATCTTTAAGACCAATGTCATTG
GCCTTGAATCAGCACATTGGCACCTTACATCTTTAAGTCCAATATCGCTGACCTTGAATCAGCAC
ATTGGCATCTTCATCTTT
Found at i:448378 original size:13 final size:13
Alignment explanation
Indices: 448360--448385 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
448350 TACACAAAGT
448360 ATGTATCGATACA
1 ATGTATCGATACA
448373 ATGTATCGATACA
1 ATGTATCGATACA
448386 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:448383 original size:32 final size:33
Alignment explanation
Indices: 448342--448405 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
448332 TAGCCAAACT
**
448342 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
448374 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
448406 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:453652 original size:13 final size:13
Alignment explanation
Indices: 453634--453659 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
453624 TACACAAAGT
453634 ATGTATCGATACA
1 ATGTATCGATACA
453647 ATGTATCGATACA
1 ATGTATCGATACA
453660 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:453657 original size:32 final size:33
Alignment explanation
Indices: 453616--453679 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
453606 TAGCCAAACT
**
453616 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
453648 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
453680 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:459973 original size:21 final size:20
Alignment explanation
Indices: 459947--460000 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
459937 TTCTACAACT
*
459947 TGTATCGATACGGTAAGTGAA
1 TGTATCGATAC-ATAAGTGAA
* * *
459968 TGTATCAATACATGAGTTAA
1 TGTATCGATACATAAGTGAA
459988 TGTATCGATACAT
1 TGTATCGATACAT
460001 GTCTAAAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:462625 original size:79 final size:79
Alignment explanation
Indices: 462518--462922 Score: 368
Period size: 79 Copynumber: 5.1 Consensus size: 79
462508 TCCAAAAACG
* * *
462518 TTAATTTTTCACCATCGAGGATACTCCAACCCCATCATTTTTGAAGGGATACTCCAACCCCGCTT
1 TTAAATTTTCACCATCAAGGATACTCCAACCCCATCATTTTTGAAGGGATACTCCAACCCCGTTT
462583 TTACTTCCAAAATA
66 TTACTTCCAAAATA
* ** *
462597 TTAAATTTCTCATC-TCAAGGATACTCCAACCCCATCA-TTTCCAAGGGAATACACCAACCCCGT
1 TTAAATTT-TCACCATCAAGGATACTCCAACCCCATCATTTTTGAAGGG-ATACTCCAACCCCGT
**
462660 TTTTACTTTAAAAATA
64 TTTTACTTCCAAAATA
* ** * * * * * * * * * *
462676 TTAAAATTTTCATC-TCGGGGATACTCCAATCTCACCATCTCTGAGGGGACACTCTAATCTCGTT
1 TT-AAATTTTCACCATCAAGGATACTCCAACCCCATCATTTTTGAAGGGATACTCCAACCCCGTT
*
462740 TTTATTTCCAAAATA
65 TTTACTTCCAAAATA
* * * * * * * *
462755 TCAAATTTTCACCATCAAGGATATTCTAACCCCATCATTATCGAGGGGATACTCTAACCTCGTTT
1 TTAAATTTTCACCATCAAGGATACTCCAACCCCATCATTTTTGAAGGGATACTCCAACCCCGTTT
*
462820 TTATTTCCAAAATA
66 TTACTTCCAAAATA
* * ** * * * *
462834 TCAATTTTTCACCATCGGGGGGATACTTCAACCTCATCATTTCTG-AGGAGATACTCCAACCCCA
1 TTAAATTTTCACCATC--AAGGATACTCCAACCCCATCATTTTTGAAGG-GATACTCCAACCCCG
462898 TTTTTACTTCCAAAATA
63 TTTTTACTTCCAAAATA
462915 TTAAATTT
1 TTAAATTT
462923 ATAATCATCG
Statistics
Matches: 259, Mismatches: 59, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
78 18 0.07
79 172 0.66
80 17 0.07
81 52 0.20
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.33
Consensus pattern (79 bp):
TTAAATTTTCACCATCAAGGATACTCCAACCCCATCATTTTTGAAGGGATACTCCAACCCCGTTT
TTACTTCCAAAATA
Found at i:462963 original size:158 final size:157
Alignment explanation
Indices: 462520--462942 Score: 460
Period size: 158 Copynumber: 2.7 Consensus size: 157
462510 CAAAAACGTT
* * * *
462520 AATTTTTCACCATCGAGGATACTCCAACCCCATCATTTTTGAAGGGATACTCCAACCCCGCTTTT
1 AATTTTTCACCATCGGGGATACTCCAACCTCATCATTTCTG-AGGGATACTCCAACCCCGTTTTT
* *
462585 ACTTCCAAAATATTAAATTTCTCATC-TCAAGGATACTCCAACCCCATCATTTCCAAGGGAATAC
65 ACTTCCAAAATATTAAATTT-TCATCATCAAGGATACTCCAACCCCATCATTT-CGAGGGGATAC
462649 ACCAACCCCGTTTTTACTTTAAAAATATTA
128 ACCAACCCCGTTTTTACTTTAAAAATATTA
* * * * * * * * *
462679 AAATTTTCATC-TCGGGGATACTCCAATCTCACCATCTCTGAGGGGACACTCTAATCTCGTTTTT
1 AATTTTTCACCATCGGGGATACTCCAACCTCATCATTTCTGA-GGGATACTCCAACCCCGTTTTT
* * * * * *
462743 ATTTCCAAAATATCAAATTTTCACCATCAAGGATATTCTAACCCCATCATTATCGAGGGGATACT
65 ACTTCCAAAATATTAAATTTTCATCATCAAGGATACTCCAACCCCATCATT-TCGAGGGGATACA
* * * *
462808 CTAACCTCGTTTTTA-TTTCCAAAATA-TC
129 CCAACCCCGTTTTTACTTT-AAAAATATTA
* *
462836 AATTTTTCACCATCGGGGGGATACTTCAACCTCATCATTTCTGAGGAGATACTCCAACCCCATTT
1 AATTTTTCACCATC--GGGGATACTCCAACCTCATCATTTCTGAGG-GATACTCCAACCCCGTTT
* *
462901 TTACTTCCAAAATATTAAATTTATAATCATCGAGG-TACTCCA
63 TTACTTCCAAAATATTAAATTT-TCATCATCAAGGATACTCCA
462943 GCATCGTATT
Statistics
Matches: 212, Mismatches: 43, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 18 0.08
158 111 0.52
159 12 0.06
160 62 0.29
161 9 0.04
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.33
Consensus pattern (157 bp):
AATTTTTCACCATCGGGGATACTCCAACCTCATCATTTCTGAGGGATACTCCAACCCCGTTTTTA
CTTCCAAAATATTAAATTTTCATCATCAAGGATACTCCAACCCCATCATTTCGAGGGGATACACC
AACCCCGTTTTTACTTTAAAAATATTA
Found at i:464250 original size:18 final size:18
Alignment explanation
Indices: 464205--464244 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 18
464195 AATTTTCTTT
464205 AAACAAGAAACAAACAAAA
1 AAACAA-AAACAAACAAAA
464224 AAACAAAAACAAA-AAAA
1 AAACAAAAACAAACAAAA
464241 AAAC
1 AAAC
464245 GCAAAAGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.38
18 7 0.33
19 6 0.29
ACGTcount: A:0.82, C:0.15, G:0.03, T:0.00
Consensus pattern (18 bp):
AAACAAAAACAAACAAAA
Found at i:468119 original size:79 final size:79
Alignment explanation
Indices: 468029--468451 Score: 481
Period size: 79 Copynumber: 5.3 Consensus size: 79
468019 TCCAAAAAAT
* * * ***
468029 AATTTTCCACCATCGAGGACACTCCAACCCCGTTATTTCTGAGAAGATACTCCAACCCTGGCTTT
1 AATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGATACTCCAACCCCAACTTT
*
468094 ATTTCTAAAACACC
66 ATGTCTAAAACACC
* * *
468108 AATTTTTCACCATCGGGGATACTCCTACCCCGTTATTTCTGAGGAGATACTCCAACCCCAATTTT
1 AATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGATACTCCAACCCCAACTTT
468173 ATGTCTAAAACACC
66 ATGTCTAAAACACC
* * * *
468187 AATTTTTCACCATCGGGGATACTCCTACCCCATTATTTCTGAGGAGATACTCCAACCCCAATTTT
1 AATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGATACTCCAACCCCAACTTT
* * **
468252 ATGTATAAAATATT
66 ATGTCTAAAACACC
* * * *
468266 AATTTTCCACAATCGAGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGACTTT
1 AATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGATACTCCAACCCCAACTTT
* * *
468331 ATTTCTCAAACATC
66 ATGTCTAAAACACC
* ** * * * *
468345 GATTTTCCATAATCGGGGATACTTCAACCCCGTTATTTTTGAGGGGATACTCCAACCCC-AGTTC
1 AATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGATACTCCAACCCCAACTT-
* * *
468409 TAT-TTTCAAAAGATC
65 TATGTCT-AAAACACC
*
468424 GATTTTCCACCATCAGGGGATACTCCAA
1 AATTTTCCACCATC-GGGGATACTCCAA
468452 ACCCATCTTT
Statistics
Matches: 301, Mismatches: 40, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
78 5 0.02
79 284 0.94
80 12 0.04
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (79 bp):
AATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGATACTCCAACCCCAACTTT
ATGTCTAAAACACC
Found at i:469839 original size:62 final size:62
Alignment explanation
Indices: 469647--470361 Score: 862
Period size: 61 Copynumber: 11.7 Consensus size: 62
469637 CTTTTAGCCT
* * *
469647 TTTAGTCCTCAAAGAGCATGACG-CTTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * **
469708 TTTAGTCCTCAAAGAGCAAGATGCC-TTTTCTTTT-AAAGCCCACATGAGTTAATGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * *
469768 TTTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTAGCACCA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
*
469830 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCATACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * *
469892 TTTAGTCCTCAAAGAGTAGGATGCCTTTTT-TTTTCAAAGCCTACACTAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* ** *
469953 TTTAGTCCTCAAAGAGCAAGACACCTTTCTTCTTTTCAAAGCCCACACGAGTTGGTAGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTT-TTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * *
470016 TTTAGTCCTCAAAGAGCAGGA-GGCTTTTTCTTTTCAAAGCCCACACAAGTTAGTGGCGCCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
** * **
470077 TTTAGTATTCAAGGAGCAGGATGCCTTTTT-TTTT-AAAGCCTGCACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
470137 TTTAGTCCTCAAAGAGTAGGAT-CCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGAACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * *
470198 TTTAGTCCTTAAAGAGCTGGATGCCTTTTTTTTTTCAAAGCCCACATGAATTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
** * * ** * * **
470260 TTTTTTCTTCAAAGAGCCGGACACATTTTTGTTTT-AAAGCCCACACGAGTTTATGGCA-CC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
470320 TTTAGTCCTTAAAAAGCAAGGCAT--CTTTTCCTTTT-AAAGCCC
1 TTTAGTCCTCAAAGAGC-AGG-ATGCCTTTTTCTTTTCAAAGCCC
470362 TGTCGTAACG
Statistics
Matches: 558, Mismatches: 85, Indels: 23
0.84 0.13 0.03
Matches are distributed among these distances:
59 6 0.01
60 118 0.21
61 204 0.37
62 183 0.33
63 47 0.08
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (62 bp):
TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
Found at i:470126 original size:245 final size:246
Alignment explanation
Indices: 469647--470310 Score: 888
Period size: 245 Copynumber: 2.7 Consensus size: 246
469637 CTTTTAGCCT
* * * *
469647 TTTAGTCCTCAAAGAGCATGACGCTTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
1 TTTAGTCCTCAAAGAGTAGGATGCCTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
**
469712 GTCCTCAAAGAGCAAGATGCC-TTTTCTTTT-AAAGCCCACATGAGTTAATGGCACCCTTTAGTC
66 GTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTAGTC
* * * * *
469775 CTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTAGCACCATTTAGTCCTC
131 CTCAAAGAGCAGGA-GACTTTTTCTTTTCAAAGCCCACACGAGTTAGTAGCACCATTTAGTACTC
*
469840 AAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCATACGAGTTGGTGGCACCC
195 AAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
469892 TTTAGTCCTCAAAGAGTAGGATGCCTTTTTTTTTCAAAGCCTACACTAGTTGGTGGCACCTTTTA
1 TTTAGTCCTCAAAGAGTAGGATGCCTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
** * *
469957 GTCCTCAAAGAGCAAGACACCTTTCTTCTTTTCAAAGCCCACACGAGTTGGTAGCACCCTTTAGT
66 GTCCTCAAAGAGCAAGATGCCTTT-TTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTAGT
* * * * * *
470022 CCTCAAAGAGCAGGAGGCTTTTTCTTTTCAAAGCCCACACAAGTTAGTGGCGCCCTTTAGTATTC
130 CCTCAAAGAGCAGGAGACTTTTTCTTTTCAAAGCCCACACGAGTTAGTAGCACCATTTAGTACTC
* **
470087 AAGGAGCAGGATGCCTTTTT-TTTT-AAAGCCTGCACGAGTTGGTGGCACCC
195 AAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
470137 TTTAGTCCTCAAAGAGTAGGATCCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGAACCCTTTA
1 TTTAGTCCTCAAAGAGTAGGATGCCTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
* ** * * **
470202 GTCCTTAAAGAGCTGGATGCCTTTTTTTTTTCAAAGCCCACATGAATTGGTGGCACCCTTTTTTC
66 GTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTAGTC
* * * *
470267 TTCAAAGAGCCGGACACATTTTTGTTTT-AAAGCCCACACGAGTT
131 CTCAAAGAGCAGGAGAC-TTTTTCTTTTCAAAGCCCACACGAGTT
470311 TATGGCACCT
Statistics
Matches: 365, Mismatches: 50, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
244 63 0.17
245 187 0.51
246 6 0.02
247 67 0.18
248 42 0.12
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (246 bp):
TTTAGTCCTCAAAGAGTAGGATGCCTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
GTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTAGTC
CTCAAAGAGCAGGAGACTTTTTCTTTTCAAAGCCCACACGAGTTAGTAGCACCATTTAGTACTCA
AAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
Found at i:473485 original size:52 final size:52
Alignment explanation
Indices: 473405--473556 Score: 218
Period size: 52 Copynumber: 2.9 Consensus size: 52
473395 CCCGAAATAT
* *
473405 GAAAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTACATGTATCGATACATTTAATAGTGTATCGATACATCTGG
* * *
473457 GCAAATTTGCCTACATGTATCGATACATTTTATAATGTATCGATACATCTGG
1 GAAAATTTGCCTACATGTATCGATACATTTAATAGTGTATCGATACATCTGG
*
473509 GAAAATTTGCCTACATGTATCGATACA--AAGATCAGTGTATCGATACAT
1 GAAAATTTGCCTACATGTATCGATACATTTA-AT-AGTGTATCGATACAT
473557 TTGAGTAATG
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.02
52 87 0.98
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (52 bp):
GAAAATTTGCCTACATGTATCGATACATTTAATAGTGTATCGATACATCTGG
Found at i:473527 original size:32 final size:32
Alignment explanation
Indices: 473491--473608 Score: 103
Period size: 32 Copynumber: 3.4 Consensus size: 32
473481 ACATTTTATA
473491 ATGTATCGATACATCTGGGAAAATTTGCCTAC
1 ATGTATCGATACATCTGGGAAAATTTGCCTAC
* * **
473523 ATGTATCGATACAAAGATCAGTGTATCGATACATTTGAGTA-
1 ATGTATCGATAC----ATC--TG---GGA-AAATTTGCCTAC
473564 ATGTATCGATACATCTGGGAAAATTTGCCTAC
1 ATGTATCGATACATCTGGGAAAATTTGCCTAC
473596 ATGTATCGATACA
1 ATGTATCGATACA
473609 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 8, Indels: 22
0.69 0.08 0.23
Matches are distributed among these distances:
31 8 0.12
32 27 0.40
35 2 0.03
36 3 0.04
37 3 0.04
38 2 0.03
41 14 0.21
42 8 0.12
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (32 bp):
ATGTATCGATACATCTGGGAAAATTTGCCTAC
Found at i:473581 original size:73 final size:72
Alignment explanation
Indices: 473472--473631 Score: 302
Period size: 73 Copynumber: 2.2 Consensus size: 72
473462 TTTGCCTACA
*
473472 TGTATCGATACATTTTATAATGTATCGATACATCTGGGAAAATTTGCCTACATGTATCGATACAA
1 TGTATCGATACATTTGATAATGTATCGATACATCTGGGAAAATTTGCCTACATGTATCGATACAA
473537 AGATCAG
66 AGATCAG
473544 TGTATCGATACATTTGAGTAATGTATCGATACATCTGGGAAAATTTGCCTACATGTATCGATACA
1 TGTATCGATACATTTGA-TAATGTATCGATACATCTGGGAAAATTTGCCTACATGTATCGATACA
473609 AAGATCAG
65 AAGATCAG
473617 TGTATCGATACATTT
1 TGTATCGATACATTT
473632 TTTTGGCAGT
Statistics
Matches: 86, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
72 16 0.19
73 70 0.81
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (72 bp):
TGTATCGATACATTTGATAATGTATCGATACATCTGGGAAAATTTGCCTACATGTATCGATACAA
AGATCAG
Found at i:473688 original size:13 final size:13
Alignment explanation
Indices: 473670--473694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
473660 ACAAAACTTA
473670 TGTATCGATACAT
1 TGTATCGATACAT
473683 TGTATCGATACA
1 TGTATCGATACA
473695 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:473690 original size:32 final size:33
Alignment explanation
Indices: 473649--473714 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
473639 AGTAGCTAAA
473649 ATTGTATCGATACAAAAC-TTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
*
473681 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
473714 A
1 A
473715 AATCGTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAAAACTTTATGTATCGATAC
Found at i:474414 original size:55 final size:55
Alignment explanation
Indices: 474344--474896 Score: 220
Period size: 55 Copynumber: 10.4 Consensus size: 55
474334 ACCAATACGT
*
474344 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATGTGC
1 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
* * * ** ** *
474399 TGATTCACGGTCAACGACATTAGACTGGAAGATTAG-AAAA--ATGCCAATGTGC
1 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
* * * * *
474451 TGATTCAAGGTCAACAACATTGGGTTTTAAAGATGATG---AAGG-TGCCAATATGC
1 TGATTCACGGCCAACGATATTGGG-TTTAAAGATGA-GAAAAAGGATGCCAATGTGC
* * * * * *
474504 TGATTCAAGGCCAACAATATTGGACTTAAAAATGAAGATGAGAAAAGTAATAAAGATGCCAATAT
1 TGATTCACGGCCAACGATATTGG-GTT-----TAAAGATGAG---A--AA-AAGGATGCCAATGT
*
474569 GT
54 GC
* *
474571 TGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGC
1 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
* * * *** * *
474626 TGATTCAAGGCCAACTACATTGAACTTAAAGATG-G-AAAAGG-TGCCAATATTC
1 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
* * * * * *
474678 TGATTCAAGGCCAGCTATATT-GG-----A-CT----TAAAGG-TGCCAATGTAC
1 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
* * * ** *
474721 TGATTCAAGGCCAGCTATATTGGACTTAAAGA--AG---AAGG-TGCCAATATGC
1 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
* * * ** *
474770 TGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAAAAAGGATGTCAATGTGC
1 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
* * * * ** *
474825 TGATTCAAGGCCAGCTACATTGGACTTAAAGAT--G--AAA-G-TGCCAATATGC
1 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
* *
474874 TGATTCAAGGCCAGCGATATTGG
1 TGATTCACGGCCAACGATATTGG
474897 ACTTAAAGGT
Statistics
Matches: 403, Mismatches: 60, Indels: 76
0.75 0.11 0.14
Matches are distributed among these distances:
43 35 0.09
44 1 0.00
45 1 0.00
46 1 0.00
49 76 0.19
50 1 0.00
51 5 0.01
52 60 0.15
53 47 0.12
54 10 0.02
55 110 0.27
56 2 0.00
57 1 0.00
58 9 0.02
61 9 0.02
66 4 0.01
67 31 0.08
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (55 bp):
TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGCCAATGTGC
Found at i:474709 original size:22 final size:22
Alignment explanation
Indices: 474684--474751 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
474674 ATTCTGATTC
474684 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
* * * *
474706 AAGGTGCCA-ATGTACT-GA-TTC
1 AA-G-GCCAGCTATATTGGACTTA
474727 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
474749 AAG
1 AAG
474752 AAGAAGGTGC
Statistics
Matches: 33, Mismatches: 8, Indels: 10
0.65 0.16 0.20
Matches are distributed among these distances:
19 4 0.12
20 5 0.15
21 6 0.18
22 9 0.27
23 5 0.15
24 4 0.12
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (22 bp):
AAGGCCAGCTATATTGGACTTA
Found at i:474778 original size:49 final size:49
Alignment explanation
Indices: 474560--475047 Score: 433
Period size: 49 Copynumber: 9.8 Consensus size: 49
474550 GTAATAAAGA
* * * * *
474560 TGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA--AG---AAGG
* * * * * *
474614 ATGTCAATGTGCTGATTCAAGGCCAACTACATTGAACTTAAAGATGGAAAAGG
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA---AGAAGG
*
474667 TGCCAATATTCTGATTCAAGGCCAGCTATATTGGACTT-----A-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGG
* *
474710 TGCCAATGTACTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGG
474759 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA--AG---AAGG
* * * * *
474813 ATGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAG
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGG
*
474863 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-----A-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGG
* ** *
474906 TGCCAATGTGCTGATTCAAGGCTGGCTACATTGGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGG
*
474955 TGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA--AG---AAGG
* * * * *
475009 ATGTCAATGTGTTGATTCAAGGCTAGCTACATTGGACTT
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
475048 TTCACCTACA
Statistics
Matches: 361, Mismatches: 47, Indels: 50
0.79 0.10 0.11
Matches are distributed among these distances:
43 76 0.21
44 1 0.00
48 2 0.01
49 121 0.34
50 3 0.01
51 4 0.01
52 32 0.09
53 5 0.01
54 8 0.02
55 107 0.30
56 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGG
Found at i:474784 original size:92 final size:93
Alignment explanation
Indices: 474609--474996 Score: 510
Period size: 92 Copynumber: 4.0 Consensus size: 93
474599 AAGATGAGAA
* * * *
474609 AAAGGATGTCAATGTGCTGATTCAAGGCCAACTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGGTGCCAAT
*
474674 ATTCTGATTCAAGGCCAGCTATATTGGACTT
63 ATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
474705 AAAGG-TGCCAATGTACTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATG
1 AAAGGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
474769 CTGATTCAAGGCCAGCTATATTGGACTTAAAGAT
66 CTGATTCAAGGCCAGCTATATTGGAC-T-----T
* * *
474803 GAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGCCA
1 -----AAAGGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCA
*
474868 ATATGCTGATTCAAGGCCAGCGATATTGGACTT
61 ATATGCTGATTCAAGGCCAGCTATATTGGACTT
**
474901 AAAGG-TGCCAATGTGCTGATTCAAGGCTGGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
1 AAAGGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
*
474965 CTGATTCAAGGCCAGCTATATTAGACTT
66 CTGATTCAAGGCCAGCTATATTGGACTT
474993 AAAG
1 AAAG
474997 ATGAGAAAAA
Statistics
Matches: 260, Mismatches: 20, Indels: 28
0.84 0.06 0.09
Matches are distributed among these distances:
92 124 0.48
93 6 0.02
95 38 0.15
96 5 0.02
98 2 0.01
103 6 0.02
104 79 0.30
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (93 bp):
AAAGGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
CTGATTCAAGGCCAGCTATATTGGACTT
Found at i:474894 original size:104 final size:103
Alignment explanation
Indices: 474705--475047 Score: 483
Period size: 104 Copynumber: 3.4 Consensus size: 103
474695 TATTGGACTT
* *
474705 AAAGGTGCCAATGTACTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
474770 TGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAA
66 TGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAA
* * *
474808 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGCCAATATG
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
*
474873 CTGATTCAAGGCCAGCGATATTGGAC-T-----T-----
65 CTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAA
**
474901 AAAGGTGCCAATGTGCTGATTCAAGGCTGGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
474966 TGATTCAAGGCCAGCTATATTAGACTTAAAGATGAGAA
66 TGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAA
* * *
475004 AAAGGATGTCAATGTGTTGATTCAAGGCTAGCTACATTGGACTT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
475048 TTCACCTACA
Statistics
Matches: 211, Mismatches: 16, Indels: 25
0.84 0.06 0.10
Matches are distributed among these distances:
92 78 0.37
93 6 0.03
98 2 0.01
103 11 0.05
104 114 0.54
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.26
Consensus pattern (103 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAA
Found at i:474958 original size:196 final size:199
Alignment explanation
Indices: 474560--475047 Score: 811
Period size: 196 Copynumber: 2.5 Consensus size: 199
474550 GTAATAAAGA
* * * * *
474560 TGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAAAAAGGATGTCAATGTG
* * *
474625 CTGATTCAAGGCCAACTACATTGAACTTAAAGATGGAAAAGGTGCCAATATTCTGATTCAAGGCC
66 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCC
* *
474690 AGCTATATTGGACTTAAAGGTGCCAATGTACTGATTCAAGGCCAGCTATATTGGACTTAAAGAAG
131 AGCGATATTGGACTTAAAGGTGCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG
474755 AAGG
196 AAGG
474759 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAAAAAGGATGTCAATGTG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAAAAAGGATGTCAATGTG
474824 CTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AAA-GTGCCAATATGCTGATTCAAGGCC
66 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCC
* **
474886 AGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCTGGCTACATTGGACTTAAAGAAG
131 AGCGATATTGGACTTAAAGGTGCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG
474951 AAGG
196 AAGG
*
474955 TGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGATGAGAAAAAGGATGTCAATGTG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAAAAAGGATGTCAATGTG
* *
475020 TTGATTCAAGGCTAGCTACATTGGACTT
66 CTGATTCAAGGCCAGCTACATTGGACTT
475048 TTCACCTACA
Statistics
Matches: 273, Mismatches: 16, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
196 177 0.65
197 3 0.01
198 1 0.00
199 92 0.34
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (199 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGAAAAAGGATGTCAATGTG
CTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCC
AGCGATATTGGACTTAAAGGTGCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGAAG
AAGG
Found at i:475919 original size:89 final size:88
Alignment explanation
Indices: 475579--475926 Score: 299
Period size: 89 Copynumber: 3.9 Consensus size: 88
475569 TTATGGAAAA
* * * * ** *
475579 CACATATTCCCAACCATAGCCCCTTTACTTAACCACTAGATGGTATTATTGATGCATCACAAAAC
1 CACACATTCCCAATCATATCCCCTTCACCCAACCA-TAGATGG---TATTGATGCATCACAAAGC
* * *
475644 -CTAATTTTCTT-GGGGCAAGGTGCAACC
62 TC-GA-TTTCTTGGGGGCAAGGTGTAGCC
** * *
475671 CACACATTCCCCAATCATAT-CCCTATTTCCCAACCATTAGATGGTATTGATGCATCATAATGCT
1 CACACATT-CCCAATCATATCCCCT-TCACCCAACCA-TAGATGGTATTGATGCATCACAAAGCT
* * *** *
475735 TGATTTCCTCCAGGTAAGGTGTAGCC
63 CGATTTCTTGGGGGCAAGGTGTAGCC
* * * * *
475761 CACACATTCCTAATCATATCCTCTTCATCCAACCACTAGATGGTATTGTTGCATCACAAAGCTTG
1 CACACATTCCCAATCATATCCCCTTCACCCAACCA-TAGATGGTATTGATGCATCACAAAGCTCG
*
475826 ATTTCTTGGGGGCAAGGTGTAGGC
65 ATTTCTTGGGGGCAAGGTGTAGCC
* *
475850 CACACATTCCCAATCATATCCCCTTCACCCAACCATAAAATTGTATTGATGCATCACAAAGC-CG
1 CACACATTCCCAATCATATCCCCTTCACCCAACCAT-AGATGGTATTGATGCATCACAAAGCTCG
475914 AATTTCCTTGGGG
65 -ATTT-CTTGGGG
475927 TAAGGATTTC
Statistics
Matches: 208, Mismatches: 40, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
88 2 0.01
89 125 0.60
90 46 0.22
92 11 0.05
93 24 0.12
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (88 bp):
CACACATTCCCAATCATATCCCCTTCACCCAACCATAGATGGTATTGATGCATCACAAAGCTCGA
TTTCTTGGGGGCAAGGTGTAGCC
Found at i:476235 original size:35 final size:35
Alignment explanation
Indices: 476180--476334 Score: 211
Period size: 35 Copynumber: 4.4 Consensus size: 35
476170 CATTTGACTA
*
476180 TATCTGGTCAAACTCCTTCCATCATCGTTTAACTT
1 TATCTGGTCAAACTCCTTCCATCATCGTTTAACTG
* * *
476215 TATTTGGTCAAACTCTTTCCATCATCGTTTGACTG
1 TATCTGGTCAAACTCCTTCCATCATCGTTTAACTG
* *
476250 TATCTAGTCAAACTCCTTCCATCATCGTGTAACTG
1 TATCTGGTCAAACTCCTTCCATCATCGTTTAACTG
* * *
476285 TATCTGGTTAAACTCCTTCCATCATCGTTTGATTG
1 TATCTGGTCAAACTCCTTCCATCATCGTTTAACTG
* *
476320 TATCTAGTGAAACTC
1 TATCTGGTCAAACTC
476335 TTTTTACCCT
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 104 1.00
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.39
Consensus pattern (35 bp):
TATCTGGTCAAACTCCTTCCATCATCGTTTAACTG
Found at i:476260 original size:70 final size:70
Alignment explanation
Indices: 476172--476334 Score: 245
Period size: 70 Copynumber: 2.3 Consensus size: 70
476162 TTTTCTACCA
* * * * * *
476172 TTTGACTATATCTGGTCAAACTCCTTCCATCATCGTTTAACTTTATTTGGTCAAACTCTTTCCAT
1 TTTGACTGTATCTAGTCAAACTCCTTCCATCATCGTGTAACTGTATCTGGTCAAACTCCTTCCAT
476237 CATCG
66 CATCG
*
476242 TTTGACTGTATCTAGTCAAACTCCTTCCATCATCGTGTAACTGTATCTGGTTAAACTCCTTCCAT
1 TTTGACTGTATCTAGTCAAACTCCTTCCATCATCGTGTAACTGTATCTGGTCAAACTCCTTCCAT
476307 CATCG
66 CATCG
* *
476312 TTTGATTGTATCTAGTGAAACTC
1 TTTGACTGTATCTAGTCAAACTC
476335 TTTTTACCCT
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 84 1.00
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (70 bp):
TTTGACTGTATCTAGTCAAACTCCTTCCATCATCGTGTAACTGTATCTGGTCAAACTCCTTCCAT
CATCG
Found at i:476353 original size:70 final size:70
Alignment explanation
Indices: 476172--476357 Score: 219
Period size: 70 Copynumber: 2.7 Consensus size: 70
476162 TTTTCTACCA
* * * * * * *
476172 TTTGACTATATCTGGTCAAACTCCTTCCATCATCGTTTAACTTTATTTGGTCAAACTCTTTCCAT
1 TTTGACTGTATCTAGTCAAACTCCTTCCACCATCATTTAACTGTATCTGGTCAAACTCCTTCCAT
476237 CATCG
66 CATCG
* * * *
476242 TTTGACTGTATCTAGTCAAACTCCTTCCATCATCGTGTAACTGTATCTGGTTAAACTCCTTCCAT
1 TTTGACTGTATCTAGTCAAACTCCTTCCACCATCATTTAACTGTATCTGGTCAAACTCCTTCCAT
476307 CATCG
66 CATCG
* * * ** *
476312 TTTGATTGTATCTAGTGAAACTCTTTTTACCCTCATTTAACTGTAT
1 TTTGACTGTATCTAGTCAAACTCCTTCCACCATCATTTAACTGTAT
476358 TGGCATTTAG
Statistics
Matches: 100, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
70 100 1.00
ACGTcount: A:0.23, C:0.24, G:0.11, T:0.41
Consensus pattern (70 bp):
TTTGACTGTATCTAGTCAAACTCCTTCCACCATCATTTAACTGTATCTGGTCAAACTCCTTCCAT
CATCG
Found at i:476673 original size:88 final size:85
Alignment explanation
Indices: 476490--476830 Score: 331
Period size: 88 Copynumber: 3.9 Consensus size: 85
476480 TTGTTAGACA
* * * * * *
476490 TATGGTTACCACACTAGTCAAATGCTTCTCATTTGGTCTAACGTATGGTTACCACCCTGGTTAGA
1 TATGGTTACCACCCTAGTCAAAT-CTTCTCATTTTGTCTGACGTATGGTTACCACCATGGTCAAA
* *
476555 TTCTTTTCATTTCGATTTGACA
65 TTCTTCTCATTT-GATTTGACG
*
476577 TATGGTTACCACCCTAGTCAAACTCTTCTCATTTTAGTCTGAGGTATGGTTACCACCATGGTCAA
1 TATGGTTACCACCCTAGTCAAA-TCTTCTCATTTT-GTCTGACGTATGGTTACCACCATGGTCAA
*
476642 ATTCTTGTCATTCTGATTTGACG
64 ATTCTTCTCATT-TGATTTGACG
* * * * * * *
476665 TATAGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTTTGACGTCTGGTTGCCACCTTGGTCAA
1 TATGGTTACCACCCTAGTCAAATCT-TCTCATT-TTGTCTGACGTATGGTTACCACCATGGTCAA
* * * * *
476730 ACTCTTCTCATTTTGGTCTAATG
64 ATTCTTCTCA-TTTGATTTGACG
* * * * * *
476753 TATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTTTGACGTCTGGTTGCCACCTTGGTCAA
1 TATGGTTACCACCCTAGTCAAATCT-TCTCATT-TTGTCTGACGTATGGTTACCACCATGGTCAA
*
476818 ACTCTTCTCATTT
64 ATTCTTCTCATTT
476831 TGGTCTAATG
Statistics
Matches: 224, Mismatches: 24, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
87 37 0.17
88 182 0.81
89 5 0.02
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.38
Consensus pattern (85 bp):
TATGGTTACCACCCTAGTCAAATCTTCTCATTTTGTCTGACGTATGGTTACCACCATGGTCAAAT
TCTTCTCATTTGATTTGACG
Found at i:476831 original size:88 final size:88
Alignment explanation
Indices: 476577--476852 Score: 385
Period size: 88 Copynumber: 3.1 Consensus size: 88
476567 CGATTTGACA
* * * * * * *
476577 TATGGTTACCACCCTAGTCAAACTCT-TCTCATT-TTAGTCTGAGGTATGGTTACCACCATGGTC
1 TATGGTTACCACCCTAGTCAAA-TCTGCCTCCTTCTT-GTTTGACGTCTGGTTGCCACCTTGGTC
* * * * * * *
476640 AAATTCTTGTCATTCTGATTTGACG
64 AAACTCTTCTCATTTTGGTCTAATG
*
476665 TATAGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTTTGACGTCTGGTTGCCACCTTGGTCAA
1 TATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTTTGACGTCTGGTTGCCACCTTGGTCAA
476730 ACTCTTCTCATTTTGGTCTAATG
66 ACTCTTCTCATTTTGGTCTAATG
476753 TATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTTTGACGTCTGGTTGCCACCTTGGTCAA
1 TATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTTTGACGTCTGGTTGCCACCTTGGTCAA
476818 ACTCTTCTCATTTTGGTCTAATG
66 ACTCTTCTCATTTTGGTCTAATG
476841 TATGGTTACCAC
1 TATGGTTACCAC
476853 TGTAGACACC
Statistics
Matches: 170, Mismatches: 16, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
87 3 0.02
88 165 0.97
89 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.38
Consensus pattern (88 bp):
TATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTTTGACGTCTGGTTGCCACCTTGGTCAA
ACTCTTCTCATTTTGGTCTAATG
Found at i:476847 original size:44 final size:43
Alignment explanation
Indices: 476490--476852 Score: 282
Period size: 44 Copynumber: 8.3 Consensus size: 43
476480 TTGTTAGACA
* * *
476490 TATGGTTACCACACTAGTCAAATGCTTCTCA-TTTGGTCTAACG
1 TATGGTTACCACCCTGGTCAAAT-CTTCTCATTTTGGTCTGACG
* * * * * * *
476533 TATGGTTACCACCCTGGTTAGATTCTTTTCATTTCGATTTGACA
1 TATGGTTACCACCCTGGTCA-AATCTTCTCATTTTGGTCTGACG
* * *
476577 TATGGTTACCACCCTAGTCAAACTCTTCTCATTTTAGTCTGAGG
1 TATGGTTACCACCCTGGTCAAA-TCTTCTCATTTTGGTCTGACG
* * * * *
476621 TATGGTTACCACCATGGTCAAATTCTTGTCATTCTGATTTGACG
1 TATGGTTACCACCCTGGTCAAA-TCTTCTCATTTTGGTCTGACG
* * * * *
476665 TATAGTTACCACCCTAGTCAAATCTGCCTCCTTCTT-GTTTGACG
1 TATGGTTACCACCCTGGTCAAATCT-TCTCATT-TTGGTCTGACG
* * * * *
476709 TCTGGTTGCCACCTTGGTCAAACTCTTCTCATTTTGGTCTAATG
1 TATGGTTACCACCCTGGTCAAA-TCTTCTCATTTTGGTCTGACG
* * * *
476753 TATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTT-GTTTGACG
1 TATGGTTACCACCCTGGTCAAATCT-TCTCATT-TTGGTCTGACG
* * * * *
476797 TCTGGTTGCCACCTTGGTCAAACTCTTCTCATTTTGGTCTAATG
1 TATGGTTACCACCCTGGTCAAA-TCTTCTCATTTTGGTCTGACG
476841 TATGGTTACCAC
1 TATGGTTACCAC
476853 TGTAGACACC
Statistics
Matches: 242, Mismatches: 67, Indels: 21
0.73 0.20 0.06
Matches are distributed among these distances:
43 34 0.14
44 199 0.82
45 9 0.04
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (43 bp):
TATGGTTACCACCCTGGTCAAATCTTCTCATTTTGGTCTGACG
Found at i:479623 original size:28 final size:28
Alignment explanation
Indices: 479560--479633 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
479550 TTTCACAATT
* * * **
479560 GGGGAAACTCTAACCCCATTATTTCATC
1 GGGGATACTCAAACCCCGTTATTTCAGA
* *
479588 GGGAATACTCAAACCCCGTTATTTCCGA
1 GGGGATACTCAAACCCCGTTATTTCAGA
*
479616 GGGGATACTCCAACCCCG
1 GGGGATACTCAAACCCCG
479634 GCTTTATATC
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (28 bp):
GGGGATACTCAAACCCCGTTATTTCAGA
Found at i:479705 original size:109 final size:108
Alignment explanation
Indices: 479509--479789 Score: 320
Period size: 109 Copynumber: 2.6 Consensus size: 108
479499 TACCGTAATC
* * * * * * *
479509 GGGGATACTCCAACTCCGATTTTAT-TTTCAAAACACCAA--TTTTTCACAATTGGGGAAACTCT
1 GGGGATACTCCAACCCCGACTTTATATCT-AAAATA-CAACTTTTTTCACAATCGGGGATACTCC
*
479571 AACCCCATTATTTCATCGGGAATACTCAAACCCCGTTATTTCCGA
64 AACCCCATTATGTCATCGGGAATACTCAAACCCCGTTATTTCCGA
* * * * *
479616 GGGGATACTCCAACCCCGGCTTTATATCTAAAATATTAATTTTTTTCATAATCGGGGGTACTCCA
1 GGGGATACTCCAACCCCGACTTTATATCTAAAATA-CAACTTTTTTCACAATCGGGGATACTCCA
* *
479681 ACCCCATTATGTCATCGAGG-ATACTCCAATCCCGTTATTTCCGA
65 ACCCCATTATGTCATCG-GGAATACTCAAACCCCGTTATTTCCGA
* * * *
479725 GGGGATACTCCAACCTCGATTTTATTTCTAAAATACCACTTTTTT-ACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATATCTAAAATACAACTTTTTTCACAATCGGGGATACTCCAA
479789 C
66 C
479790 TCCGATTTTA
Statistics
Matches: 146, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
107 47 0.32
108 9 0.06
109 88 0.60
110 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (108 bp):
GGGGATACTCCAACCCCGACTTTATATCTAAAATACAACTTTTTTCACAATCGGGGATACTCCAA
CCCCATTATGTCATCGGGAATACTCAAACCCCGTTATTTCCGA
Found at i:479706 original size:28 final size:27
Alignment explanation
Indices: 479674--479739 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
479664 TAATCGGGGG
479674 TACTCCAACCCCATTATGTCATCGA-GGA
1 TACTCCAACCCCATTATGTC--CGAGGGA
* * *
479702 TACTCCAATCCCGTTATTTCCGAGGGGA
1 TACTCCAACCCCATTATGTCCGA-GGGA
479730 TACTCCAACC
1 TACTCCAACC
479740 TCGATTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 3 0.09
28 29 0.91
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (27 bp):
TACTCCAACCCCATTATGTCCGAGGGA
Found at i:479785 original size:51 final size:52
Alignment explanation
Indices: 479725--479841 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 52
479715 TTATTTCCGA
* * * * *
479725 GGGGATACTCCAACCT-CGATTTTATTTCTAAAATACCACTTTTTTACAATC
1 GGGGATACTCCAACCTCCGATTTTATTTCCAAAACACCAATTTCTCACAATC
479776 GGGGATACTCCAA-CTCCGATTTTATTTCCAAAACACCAATTTCTCACAATC
1 GGGGATACTCCAACCTCCGATTTTATTTCCAAAACACCAATTTCTCACAATC
*
479827 AGGGATACTCCAACC
1 GGGGATACTCCAACC
479842 CCGTTATTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
50 2 0.03
51 55 0.95
52 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (52 bp):
GGGGATACTCCAACCTCCGATTTTATTTCCAAAACACCAATTTCTCACAATC
Found at i:479990 original size:158 final size:158
Alignment explanation
Indices: 479777--480073 Score: 436
Period size: 158 Copynumber: 1.9 Consensus size: 158
479767 TTTACAATCG
* *
479777 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAACC
1 GGGATACTACAACCCCGATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAACC
* * * *
479842 CCGTTATTTTCACA-GGGATAGTCCAACCCCGGCCTTATTTCTAAAGCATCGATTTTCCACAATC
66 CCGTTATTTTCA-AGGGGATACTCCAACCCCGACCTTATTTCTAAAACATCAATTTTCCACAATC
479906 GGGGATACTCCAACCTCGCTATTTTCGAA
130 GGGGATACTCCAACCTCGCTATTTTCGAA
* * * *
479935 GGGATACTACAACCCCGATTTTATTTTCAAAACACCAATTT-TCTATAATCGGGGATACTCTAAC
1 GGGATACTACAACCCCGATTTTATTTCCAAAACACCAATTTCTC-ACAATCAGGGATACTCCAAC
* ** *
479999 CCCTTTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCCATAATC
65 CCCGTTATTTTCAAGGGGATACTCCAACCCCGACCTTATTTCTAAAACATCAATTTTCCACAATC
480064 GGGGATACTC
130 GGGGATACTC
480074 TAACTTCGAT
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
157 3 0.02
158 120 0.98
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (158 bp):
GGGATACTACAACCCCGATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAACC
CCGTTATTTTCAAGGGGATACTCCAACCCCGACCTTATTTCTAAAACATCAATTTTCCACAATCG
GGGATACTCCAACCTCGCTATTTTCGAA
Found at i:480077 original size:79 final size:78
Alignment explanation
Indices: 479777--480073 Score: 364
Period size: 79 Copynumber: 3.8 Consensus size: 78
479767 TTTACAATCG
* * *
479777 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAA-TTTCTCACAATCAGGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTC-CACAATCGGGGATACTCCAAC
479841 CCCGTTATTTTCACA
65 CCCGTTATTTTCA-A
* *** * * *
479856 GGGATAGTCCAACCCCGGCCTTATTTCTAAAGCATCGATTTTCCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCCAACC
* *
479921 TCGCTATTTTCGAA
66 CCGTTATTTTC-AA
* * * *
479935 GGGATACTACAACCCCGATTTTATTT-TCAAAACACCAATTTTCTATAATCGGGGATACTCTAAC
1 GGGATACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTTCCACAATCGGGGATACTCCAAC
*
479999 CCCTTTATTTTCAA
65 CCCGTTATTTTCAA
* *
480013 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCCATAATCGGGGATACTC
1 -GGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTC
480074 TAACTTCGAT
Statistics
Matches: 184, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
78 3 0.02
79 175 0.95
80 6 0.03
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (78 bp):
GGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCCAACC
CCGTTATTTTCAA
Found at i:480084 original size:51 final size:51
Alignment explanation
Indices: 480013--480132 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
480003 TTATTTTCAA
* *
480013 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATC
* ** *
480064 GGGGATACTCTAACTTCGATTTTATTTCCAAAACATCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATC
480115 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
480133 TTATTTCATC
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCCACAATC
Found at i:480148 original size:28 final size:28
Alignment explanation
Indices: 480115--480190 Score: 109
Period size: 28 Copynumber: 2.7 Consensus size: 28
480105 TTTCACAATC
480115 GGGGATACTCCAACCCCGTTATTTCATCA
1 GGGGATACTCCAACCCCGTTATTT-ATCA
* *
480144 -GGGATACTCCAACCCCGTTATTTTTTA
1 GGGGATACTCCAACCCCGTTATTTATCA
*
480171 GGGGATACTCCAGCCCCGTT
1 GGGGATACTCCAACCCCGTT
480191 GTTATCTCCA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 2 0.05
28 41 0.95
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTATCA
Found at i:481815 original size:83 final size:82
Alignment explanation
Indices: 481620--481882 Score: 211
Period size: 83 Copynumber: 3.1 Consensus size: 82
481610 TTGTTTACCT
* * * *
481620 GTCGGCTCAGTCCCTGGTAAACTCTTT-TGCCCTTTGTTGACATATCGGTTCAGCCTTGGTCAAC
1 GTCGGCTCAGTCCTTGGTAAACTCTTTAT-CCC-TTGTTGAC-TATCAGTTTAGCCTTAGTCAA-
481684 CTTTT-ATCGCTTGCTTACTTA
62 CTTTTCATCGCTT-CTTACTTA
*
481705 -TCGGCTCAGTCCATT-GTGAACTTCTTTATCCCTTGTTGACTCATCAGTTTAGCCTTAGTCAAC
1 GTCGGCTCAGTCC-TTGGTAAAC-TCTTTATCCCTTGTTGACT-ATCAGTTTAGCCTTAGTCAAC
*
481768 TTTTCATCTCTAT-TTAC-TA
63 TTTTCATCGCT-TCTTACTTA
* * * *
481787 GTCGCCTCAGTCCTTGGTAAACTCCTTTA-CCTTTTATTGACTTATCAATTTAGTCC-TAGTCAA
1 GTCGGCTCAGTCCTTGGTAAACT-CTTTATCC-CTTGTTGAC-TATCAGTTTAG-CCTTAGTCAA
* * *
481850 CCTTTCATCCCTTCTTTACCTA
62 CTTTTCATCGCTTC-TTACTTA
*
481872 -TCGGCTTAGTC
1 GTCGGCTCAGTC
481883 TTGAGAAAAT
Statistics
Matches: 148, Mismatches: 15, Indels: 31
0.76 0.08 0.16
Matches are distributed among these distances:
82 8 0.05
83 64 0.43
84 63 0.43
85 12 0.08
86 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (82 bp):
GTCGGCTCAGTCCTTGGTAAACTCTTTATCCCTTGTTGACTATCAGTTTAGCCTTAGTCAACTTT
TCATCGCTTCTTACTTA
Found at i:481912 original size:84 final size:84
Alignment explanation
Indices: 481678--481966 Score: 238
Period size: 84 Copynumber: 3.4 Consensus size: 84
481668 TTCAGCCTTG
* * * * * *
481678 GTCAACCTTTTATCGCTTGC-TTACTTATCGGCTCAGTCCATTGTG--AACTTCTTTATCCCTTG
1 GTCAACCTTTCATCTCTT-CTTTACCTATCGGCTTAGTCC-TTG-GAAAACTTCTTTATCCTTTA
* *
481740 TTGACTCATCAGTTTAG-CCTTA
63 TTGACTTATCAATTTAGTCC-TA
* * * * * *
481762 GTCAACTTTTCATCTC-TATTTA-CTAGTCGCCTCAGTCCTTGGTAAACTCCTTTA-CCTTTTAT
1 GTCAACCTTTCATCTCTTCTTTACCTA-TCGGCTTAGTCCTTGGAAAACTTCTTTATCC-TTTAT
481824 TGACTTATCAATTTAGTCCTA
64 TGACTTATCAATTTAGTCCTA
* *
481845 GTCAACCTTTCATCCCTTCTTTACCTATCGGCTTAGT-CTTGAGAAAATTTCTTTATCCTTTATT
1 GTCAACCTTTCATCTCTTCTTTACCTATCGGCTTAGTCCTTG-GAAAACTTCTTTATCCTTTATT
*
481909 GACTTGTCAATTTTA-TCCTA
65 GACTTATCAA-TTTAGTCCTA
* * *
481929 GTCAACC-ATCATACTATTCGTTTACCTGTCGGCTTAGT
1 GTCAACCTTTCAT-CTCTTC-TTTACCTATCGGCTTAGT
481967 TCTAGGTCAC
Statistics
Matches: 168, Mismatches: 24, Indels: 25
0.77 0.11 0.12
Matches are distributed among these distances:
81 1 0.01
82 7 0.04
83 65 0.39
84 69 0.41
85 26 0.15
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.43
Consensus pattern (84 bp):
GTCAACCTTTCATCTCTTCTTTACCTATCGGCTTAGTCCTTGGAAAACTTCTTTATCCTTTATTG
ACTTATCAATTTAGTCCTA
Found at i:483080 original size:165 final size:168
Alignment explanation
Indices: 482887--483194 Score: 462
Period size: 166 Copynumber: 1.9 Consensus size: 168
482877 GAGTTATTGA
* **
482887 TTTTCTTTTAGAATTCTTCATATTTTTGAAATACGA-AGTTTTCTACTTCGTAAA-ATTTTCGGA
1 TTTTCTTTTAAAATTCTTCATATTTTTGAAATA-GAGAGTTTTCTACACCGTAAATATTTTCGGA
*
482950 GAGATTTTTCTTGGTTTTTAATTTTTAAAATTTATAAAATATTATTATTTAATACATATTAAATC
65 GAGATTTTTCTTAGTTTTTAATTTTTAAAATTTATAAAATATTATTATTTAATACATATTAAATC
*
483015 AGTTTTCAAAAATTCGTTCATTTTCATTCATTTTTCATT
130 AATTTTCAAAAATTCGTTCATTTTCATTCATTTTTCATT
* * * * * *
483054 TTTTC-TTTAAAATTC-TCATGTTTTTGAAATATAGAGTTTTGTACACCGTAAATGTTTTTGGGG
1 TTTTCTTTTAAAATTCTTCATATTTTTGAAATAGAGAGTTTTCTACACCGTAAATATTTTCGGAG
* *
483117 AGATTTTTCTTAGTTTTTAATTTTTAAAATTTATCAAATATTATTATTTAATTCATATTAAATCA
66 AGATTTTTCTTAGTTTTTAATTTTTAAAATTTATAAAATATTATTATTTAATACATATTAAATCA
483182 ATTTTCAAAAATT
131 ATTTTCAAAAATT
483195 AATTCCTATT
Statistics
Matches: 126, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
164 1 0.01
165 30 0.24
166 90 0.71
167 5 0.04
ACGTcount: A:0.31, C:0.09, G:0.08, T:0.51
Consensus pattern (168 bp):
TTTTCTTTTAAAATTCTTCATATTTTTGAAATAGAGAGTTTTCTACACCGTAAATATTTTCGGAG
AGATTTTTCTTAGTTTTTAATTTTTAAAATTTATAAAATATTATTATTTAATACATATTAAATCA
ATTTTCAAAAATTCGTTCATTTTCATTCATTTTTCATT
Found at i:483614 original size:22 final size:23
Alignment explanation
Indices: 483565--483614 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
483555 AAACTCAGCA
* **
483565 AAAAAAAGAGAGGAAAGAGCAAG
1 AAAAAAAGAGAGGAAAAAAAAAG
*
483588 GAAAAAA-AGAGGAAAAAAAAAG
1 AAAAAAAGAGAGGAAAAAAAAAG
483610 AAAAA
1 AAAAA
483615 TAGTTAGGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.74, C:0.02, G:0.24, T:0.00
Consensus pattern (23 bp):
AAAAAAAGAGAGGAAAAAAAAAG
Found at i:488769 original size:20 final size:20
Alignment explanation
Indices: 488744--488908 Score: 107
Period size: 20 Copynumber: 7.8 Consensus size: 20
488734 TTTTTACCGA
*
488744 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTCTTC
488764 AATGTATCGATACATTCTATCTTTTACC
1 AATGTATCGATACA---T-TC--TT--C
****
488792 TAGATGTATCGATACATTGAAA
1 -A-ATGTATCGATACATTCTTC
* *
488814 AATGTATCGATACATGT-ATG
1 AATGTATCGATACAT-TCTTC
* *
488834 AATATGTCGATACATTCTTC
1 AATGTATCGATACATTCTTC
*
488854 AATGTATTGATACATTCTTC
1 AATGTATCGATACATTCTTC
* *
488874 AATGTATTGATACATCCTTC
1 AATGTATCGATACATTCTTC
*
488894 AATGTATCCATACAT
1 AATGTATCGATACAT
488909 CTAGTTAAAA
Statistics
Matches: 116, Mismatches: 17, Indels: 24
0.74 0.11 0.15
Matches are distributed among these distances:
19 1 0.01
20 92 0.79
21 2 0.02
23 1 0.01
24 1 0.01
26 3 0.03
27 1 0.01
28 1 0.01
29 1 0.01
30 13 0.11
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:490395 original size:78 final size:78
Alignment explanation
Indices: 490285--490490 Score: 243
Period size: 78 Copynumber: 2.6 Consensus size: 78
490275 GAGATAATAA
* * * * * * *
490285 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
490350 -TTAGAAAAAAAAT
65 TTTAGAAAAAAAAC
* *
490363 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA-
* * * *
490428 TTTGGGAATAAAGC
65 TTTAGAAAAAAAAC
* *
490442 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
490491 GAAATAACGA
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
77 1 0.01
78 54 0.50
79 53 0.49
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAC
Found at i:490482 original size:28 final size:28
Alignment explanation
Indices: 490442--490513 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
490432 GGAATAAAGC
** *
490442 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
490470 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
490498 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
490514 TCGACTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:492020 original size:20 final size:20
Alignment explanation
Indices: 491992--492066 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
491982 TCATACCCTG
491992 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
492012 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
492032 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
492052 ATGTATCGATACATT
1 ATGTATCGATACATT
492067 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:492059 original size:40 final size:39
Alignment explanation
Indices: 491992--492069 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
491982 TCATACCCTG
* *
491992 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
492032 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
492070 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:499163 original size:23 final size:23
Alignment explanation
Indices: 499120--499162 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
499110 CTTCAAAATG
*
499120 ACAAAAAAGTCAAAAGCAAAAGC
1 ACAAAAAAGTCAAAAGAAAAAGC
*
499143 ACAAAAAA-TGAAAAGAAAAA
1 ACAAAAAAGTCAAAAGAAAAA
499163 AAAAGTGCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.72, C:0.12, G:0.12, T:0.05
Consensus pattern (23 bp):
ACAAAAAAGTCAAAAGAAAAAGC
Found at i:499202 original size:40 final size:39
Alignment explanation
Indices: 499122--499207 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 39
499112 TCAAAATGAC
* *
499122 AAAAAAGTCAAAAGCAAAAGCACAAAAAATGAAAAGAAA
1 AAAAAAGTCAAAAGCAAAAGCACAAAAAAGGAAAACAAA
*
499161 AAAAAAGTGCAAAAGCAAAA-TA-AAAAAAGGGAACAACAAA
1 AAAAAAGT-CAAAAGCAAAAGCACAAAAAA-GGAA-AACAAA
499201 AATAAAA
1 AA-AAAA
499208 AACGAGGACA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
38 6 0.15
39 12 0.30
40 18 0.45
41 4 0.10
ACGTcount: A:0.72, C:0.09, G:0.13, T:0.06
Consensus pattern (39 bp):
AAAAAAGTCAAAAGCAAAAGCACAAAAAAGGAAAACAAA
Found at i:500587 original size:27 final size:27
Alignment explanation
Indices: 500543--501501 Score: 1470
Period size: 27 Copynumber: 35.1 Consensus size: 27
500533 AGTGGCATTT
* *
500543 CCTTTTAAAGTCCACAACTTCGTGGCAT
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
* *
500571 TCTTTTAAGTCCACAACTTCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
500598 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
500625 CCTTTTAAGTCCACAACTCTGTGGCATC
1 CCTTTTAAGTCCACAACTCCGTGGCA-C
500653 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
500680 CCTTTTAAGTCCACAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
500707 CCTTTTAAGACCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
500734 CCTTTCAAGACCATAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
500761 CTTTTTAAAGTCCACAACTCTGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
*
500789 CCTTTTAAATCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
500816 TCTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
* *
500844 TCTTTTAAAGCCCACAACTCCGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
500872 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
**
500899 CCTTCAAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
500926 TCTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
*
500954 CCTTTTAAGTCCACAACTCTGTGGCA-
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
500980 CCTTTCAAAGTCCACAACTCCGTGGCAC
1 CCTTT-TAAGTCCACAACTCCGTGGCAC
* *
501008 CCTTTTAAGTCCACAACTCCGTAGCGC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
501035 TCTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
501063 CCTCTTTAAGTCCACAACTCCGTGGCAC
1 CCT-TTTAAGTCCACAACTCCGTGGCAC
501091 CCTCTTTAAGTCCACAACTCCGTGGCAC
1 CCT-TTTAAGTCCACAACTCCGTGGCAC
501119 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
501146 CCTTTTAAGTCCACAACTCCGTGGCATC
1 CCTTTTAAGTCCACAACTCCGTGGCA-C
501174 CCTTTTAAGTCCACAACTCCGTGGCATC
1 CCTTTTAAGTCCACAACTCCGTGGCA-C
*
501202 TCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
501229 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
501256 CCTTTTAAGTCCACAACTCCGTAGAAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
501283 CTTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
501310 ACTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
501337 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
501364 CCTTTTAAGTCCACAACTCCGTGGCATC
1 CCTTTTAAGTCCACAACTCCGTGGCA-C
* *
501392 CCTTTTAAGACCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
501419 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
501446 CCTTTTAAGTCCACAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
501473 CCTTTTAAATCCATAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
501500 CC
1 CC
501502 ATTTCAAAGC
Statistics
Matches: 859, Mismatches: 62, Indels: 21
0.91 0.07 0.02
Matches are distributed among these distances:
26 5 0.01
27 563 0.66
28 288 0.34
29 3 0.00
ACGTcount: A:0.24, C:0.35, G:0.14, T:0.27
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:500664 original size:82 final size:81
Alignment explanation
Indices: 500543--501501 Score: 1470
Period size: 82 Copynumber: 11.7 Consensus size: 81
500533 AGTGGCATTT
* ** *
500543 CCTTTTAAAGTCCACAACTTCGTGGCATTCTTTTAAGTCCACAACTTCGTGGCACCCTTTTAAGT
1 CCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
500608 CCACAACTCCGTGGCAC
65 CCACAACTCCGTGGCAC
*
500625 CCTTTTAAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
*
500690 CCACAACTCCGTGGCAT
65 CCACAACTCCGTGGCAC
* * * * * *
500707 CCTTTTAAGACCACAACTCCGTGGCACCCTTTCAAGACCATAACTCCGTGGCATCTTTTTAAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
*
500772 CCACAACTCTGTGGCAC
65 CCACAACTCCGTGGCAC
* * *
500789 CCTTTTAAATCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTAAAG
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAG
*
500854 CCCACAACTCCGTGGCAC
64 TCCACAACTCCGTGGCAC
** *
500872 CCTTTTAAGTCCACAACTCCGTGGCACCCTTCAAAGTCCACAACTCCGTGGCACTCTTTTAAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
500937 CCACAACTCCGTGGCAC
65 CCACAACTCCGTGGCAC
* *
500954 CCTTTTAAGTCCACAACTCTGTGGCA-CCTTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGT
* *
501018 CCACAACTCCGTAGCGC
65 CCACAACTCCGTGGCAC
*
501035 TCTTTTAAAGTCCACAACTCCGTGGCACCCTCTTTAAGTCCACAACTCCGTGGCACCCTCTTTAA
1 CCTTTT-AAGTCCACAACTCCGTGGCACCCT-TTTAAGTCCACAACTCCGTGGCACCCT-TTTAA
501100 GTCCACAACTCCGTGGCAC
63 GTCCACAACTCCGTGGCAC
501119 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGT
501184 CCACAACTCCGTGGCATC
65 CCACAACTCCGTGGCA-C
* *
501202 TCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* *
501267 CACAACTCCGTAGAAC
66 CACAACTCCGTGGCAC
* *
501283 CTTTTTAAGTCCACAACTCCGTGGCACACTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
501348 CACAACTCCGTGGCAC
66 CACAACTCCGTGGCAC
* *
501364 CCTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGACCACAACTCTGTGGCACCCTTTTAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
501429 CCACAACTCCGTGGCAC
65 CCACAACTCCGTGGCAC
* * *
501446 CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAATCCATAACTCCGTGGCACCC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCC
501502 ATTTCAAAGC
Statistics
Matches: 805, Mismatches: 61, Indels: 23
0.91 0.07 0.03
Matches are distributed among these distances:
81 201 0.25
82 397 0.49
83 178 0.22
84 29 0.04
ACGTcount: A:0.24, C:0.35, G:0.14, T:0.27
Consensus pattern (81 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
CACAACTCCGTGGCAC
Found at i:500713 original size:109 final size:108
Alignment explanation
Indices: 500543--501501 Score: 1470
Period size: 109 Copynumber: 8.8 Consensus size: 108
500533 AGTGGCATTT
* ** *
500543 CCTTTTAAAGTCCACAACTTCGTGGCATTCTTTTAAGTCCACAACTTCGTGGCACCCTTTTAAGT
1 CCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
*
500608 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATC
65 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-C
* *
500653 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGAC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* * * *
500718 CACAACTCCGTGGCACCCTTTCAAGACCATAACTCCGTGGCAT
66 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
500761 CTTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAATCCACAACTCCGTGGCACTCTTTTAAAG
1 CCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAG
* *
500826 TCCACAACTCCGTGGCACTCTTTTAAAGCCCACAACTCCGTGGCAC
64 TCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCAC
** *
500872 CCTTTTAAGTCCACAACTCCGTGGCACCCTTCAAAGTCCACAACTCCGTGGCACTCTTTTAAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
*
500937 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCA-
65 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
500980 CCTTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTAGCGCTCTTTTAAAG
1 CCTTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAG
501045 TCCACAACTCCGTGGCACCCTCTTTAAGTCCACAACTCCGTGGCAC
64 TCCACAACTCCGTGGCACCCT-TTTAAGTCCACAACTCCGTGGCAC
501091 CCTCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
1 CCT-TTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
501156 CCACAACTCCGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCATC
65 CCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCA-C
* *
501202 TCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* * *
501267 CACAACTCCGTAGAACCTTTTTAAGTCCACAACTCCGTGGCAC
66 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCAC
*
501310 ACTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* *
501375 CACAACTCCGTGGCATCCCTTTTAAGACCACAACTCTGTGGCAC
66 CACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCAC
* *
501419 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAATC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
501484 CATAACTCCGTGGCACCC
66 CACAACTCCGTGGCACCC
501502 ATTTCAAAGC
Statistics
Matches: 783, Mismatches: 56, Indels: 22
0.91 0.07 0.03
Matches are distributed among these distances:
108 90 0.11
109 361 0.46
110 246 0.31
111 84 0.11
112 2 0.00
ACGTcount: A:0.24, C:0.35, G:0.14, T:0.27
Consensus pattern (108 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:501535 original size:32 final size:32
Alignment explanation
Indices: 501493--502117 Score: 1072
Period size: 32 Copynumber: 19.6 Consensus size: 32
501483 CCATAACTCC
501493 GTGGC-ACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
501524 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
501556 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
501588 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
501620 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
* *
501652 GTAGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
501684 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
501716 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
501748 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
501780 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
* *
501812 GTGGCAACCCATTCCAAAGCCCACAAAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
501844 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
501876 GTGGTAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
501908 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
501940 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
501972 GTGGCAACCCATTTCAAAACCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
* *
502004 ATGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
502036 GTGGCAACTCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
* ** *
502068 GTGGCAACCCATTTAAAAGCCCATGCAAGTCA
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
502100 GTGGCAACCCTTTTCAAA
1 GTGGCAACCCATTTCAAA
502118 TCACCATTTT
Statistics
Matches: 567, Mismatches: 26, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
31 5 0.01
32 562 0.99
ACGTcount: A:0.32, C:0.35, G:0.18, T:0.15
Consensus pattern (32 bp):
GTGGCAACCCATTTCAAAGCCCACACAAGTCG
Found at i:502672 original size:20 final size:20
Alignment explanation
Indices: 502644--502718 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
502634 TCATACCCTG
502644 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
502664 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
502684 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
502704 ATGTATCGATACATT
1 ATGTATCGATACATT
502719 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:502711 original size:40 final size:39
Alignment explanation
Indices: 502644--502721 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
502634 TCATACCCTG
* *
502644 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
502684 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
502722 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:507137 original size:33 final size:33
Alignment explanation
Indices: 507079--507145 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
507069 AAAATTTCCA
***
507079 AATGTATCGATACAAAGATCCATGTATCAATAC
1 AATGTATCGATACAAAGAAAAATGTATCAATAC
* *
507112 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCAATAC
507145 A
1 A
507146 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCAATAC
Found at i:507189 original size:19 final size:19
Alignment explanation
Indices: 507165--507219 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
507155 CAGTAGCTAA
*
507165 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
507184 TTATGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
507203 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
507220 TTGTTGAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:507299 original size:21 final size:21
Alignment explanation
Indices: 507275--507331 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
507265 CATTTGTAGG
*
507275 ATGTATTGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
507296 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
507317 ATGTATCGATACATT
1 ATGTATCGATACATT
507332 TGGATAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:510943 original size:79 final size:79
Alignment explanation
Indices: 510807--511029 Score: 209
Period size: 79 Copynumber: 2.8 Consensus size: 79
510797 TCTTCATCTC
* * ** * * * * * * *
510807 GGGGATACTCCAACC-CTGGTTTTATTTCTGAAACATCAAATTTTCATAATCGGGGATAGTCCAA
1 GGGGATACTCCAACCTC-GATTTTACTTCCAAAACACCAATTTTTTACAATTGAGGATACTCCAA
*
510871 TCCCG-CTATTTCCGA
65 CCCCGTC-ATTTCCGA
*
510886 GGGGATACTCCAACCTCGATTTTACTTCCAAAACACCAGTTTTTTACAATTGAGGATACTCCAAC
1 GGGGATACTCCAACCTCGATTTTACTTCCAAAACACCAATTTTTTACAATTGAGGATACTCCAAC
*
510951 CCCGTCATTTCTGA
66 CCCGTCATTTCCGA
* * * * ** *
510965 GGGGATGCTCCAACCTCGGTTTTATTTCTAAAACACCAATTTTCCACAA-TCAGGGATACTCCAA
1 GGGGATACTCCAACCTCGATTTTACTTCCAAAACACCAATTTTTTACAATTGA-GGATACTCCAA
511029 C
65 C
511030 TCCAATTTTA
Statistics
Matches: 119, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
78 2 0.02
79 115 0.97
80 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (79 bp):
GGGGATACTCCAACCTCGATTTTACTTCCAAAACACCAATTTTTTACAATTGAGGATACTCCAAC
CCCGTCATTTCCGA
Found at i:511042 original size:51 final size:51
Alignment explanation
Indices: 510984--511080 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
510974 CCAACCTCGG
*
510984 TTTTATTTCTAAAACACCAATTTTCCACAATCAG-GGATACTCCAACTCCAA
1 TTTTATTTCCAAAACACCAATTTTCCACAAT-AGAGGATACTCCAACTCCAA
* *
511035 TTTTATTTCCAAAACACCAATTTTTCACAATAGATGATACTCCAAC
1 TTTTATTTCCAAAACACCAATTTTCCACAATAGAGGATACTCCAAC
511081 CTTGTTATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (51 bp):
TTTTATTTCCAAAACACCAATTTTCCACAATAGAGGATACTCCAACTCCAA
Found at i:511045 original size:130 final size:129
Alignment explanation
Indices: 510887--511290 Score: 388
Period size: 130 Copynumber: 3.1 Consensus size: 129
510877 TATTTCCGAG
* * *
510887 GGGATACTCCAACCTCGATTTTACTTCCAAAACACCAGTTTTTTACAATTGAGGATACTCCAACC
1 GGGATACTCCAACC-CAATTTTATTTCCAAAACACCAGTTTTTCACAATTGAGGATACTCCAACC
* * * *
510952 CCGTCATTTCTGAGGGGATGCTCCAACCTCGGTTTTATTTCTAAAACACCAATTTTCCACAATCA
65 CCGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTCCACAATCA
* * *
511017 GGGATACTCCAACTCCAATTTTATTTCCAAAACACCAATTTTTCACAATAGATGATACTCCAACC
1 GGGATACTCCAAC-CCAATTTTATTTCCAAAACACCAGTTTTTCACAATTGAGGATACTCCAACC
** * * * ***
511082 TTGTTATTTCAT-CGGGGATACTCCAACCCCGGCTATT-TTTCCAAAATATTGA-TTTCTCACAA
65 CCGTTATTTC-TGAGGGGATACTCCAACCCCGG-TTTTATTTCTAAAATACCAATTTTC-CACAA
**
511144 TTG
127 TCA
* *** * * * * *
511147 GGGATACTTCAACCCAGGCCTTATTTCTAAATCATC-GATTTTTCACAATTGGGGATACTCTAAC
1 GGGATACTCCAACCCA-ATTTTATTTCCAAAACACCAG-TTTTTCACAATTGAGGATACTCCAAC
* * * * *
511211 CCCGTTATTTTTGA-GGAATACTCCAACCCCGATTTTATTT-TCAAAATACCAATTTTCTATAAT
64 CCCGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCT-AAAATACCAATTTTCCACAAT
511274 CA
128 CA
511276 GGGATACTCCAACCC
1 GGGATACTCCAACCC
511291 TATTATTTCC
Statistics
Matches: 216, Mismatches: 48, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
128 3 0.01
129 52 0.24
130 156 0.72
131 5 0.02
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (129 bp):
GGGATACTCCAACCCAATTTTATTTCCAAAACACCAGTTTTTCACAATTGAGGATACTCCAACCC
CGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATACCAATTTTCCACAATCA
Found at i:511160 original size:51 final size:51
Alignment explanation
Indices: 511095--511222 Score: 138
Period size: 51 Copynumber: 2.5 Consensus size: 51
511085 TTATTTCATC
* *
511095 GGGGATACTCCAACCCCGGCTATTTTTCCAAAAT-ATTGATTTCTCACAATT
1 GGGGATACTTCAACCCCGGCTATTTTT-CAAAATCATCGATTTCTCACAATT
* * * *
511146 GGGGATACTTCAACCCAGGCCT-TATTTCTAAATCATCGATTTTTCACAATT
1 GGGGATACTTCAACCCCGG-CTATTTTTCAAAATCATCGATTTCTCACAATT
*
511197 GGGGATAC-TCTAACCCC-GTTATTTTT
1 GGGGATACTTC-AACCCCGGCTATTTTT
511223 GAGGAATACT
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
49 1 0.02
50 12 0.19
51 49 0.77
52 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (51 bp):
GGGGATACTTCAACCCCGGCTATTTTTCAAAATCATCGATTTCTCACAATT
Found at i:511345 original size:79 final size:78
Alignment explanation
Indices: 511184--511370 Score: 205
Period size: 79 Copynumber: 2.4 Consensus size: 78
511174 TAAATCATCG
* ** * * **
511184 ATTTTTCACAATTGGGGATACTCTAACCCCGTTATTTTTGAGGAATACTCCAACCCCGATTTTAT
1 ATTTTCCACAATCAGGGATACTCCAACCCCATTATTTCCGAGGAATACTCCAACCCCGATTTTAT
*
511249 TTTCAAAATACCA
66 TTCCAAAATACCA
* * * *
511262 ATTTTCTATAATCAGGGATACTCCAACCCTATTATTTCCGAGGAGATACTCCAACCCTGATTTTA
1 ATTTTCCACAATCAGGGATACTCCAACCCCATTATTTCCGAGGA-ATACTCCAACCCCGATTTTA
**
511327 TTTCCAAAACT-CTG
65 TTTCCAAAA-TACCA
* *
511341 ATTTTCCACAATCGGGGATACTCCACCCCC
1 ATTTTCCACAATCAGGGATACTCCAACCCC
511371 GTTGTTATCT
Statistics
Matches: 88, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
78 34 0.39
79 53 0.60
80 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (78 bp):
ATTTTCCACAATCAGGGATACTCCAACCCCATTATTTCCGAGGAATACTCCAACCCCGATTTTAT
TTCCAAAATACCA
Found at i:516909 original size:33 final size:33
Alignment explanation
Indices: 516872--516938 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
516862 TTCAATGATT
516872 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
516905 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
516938 T
1 T
516939 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:516910 original size:13 final size:13
Alignment explanation
Indices: 516892--516916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
516882 CATAAAATGT
516892 TGTATCGATACAA
1 TGTATCGATACAA
516905 TGTATCGATACA
1 TGTATCGATACA
516917 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:516984 original size:14 final size:14
Alignment explanation
Indices: 516965--516992 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
516955 AAAAAAAAAA
516965 ATGTATCGATACAT
1 ATGTATCGATACAT
516979 ATGTATCGATACAT
1 ATGTATCGATACAT
516993 GCAGGCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
ATGTATCGATACAT
Found at i:521993 original size:28 final size:28
Alignment explanation
Indices: 521917--522762 Score: 711
Period size: 28 Copynumber: 29.4 Consensus size: 28
521907 TCAATATGAC
*
521917 CCTTTTCAAAGCCCATAAGTCAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
*
521945 TCCTTCTT-AAAGCCCAAAAGTCAGTGGCA
1 -CCTT-TTCAAAGCCCACAAGTCAGTGGCA
* *
521974 TCTTTTCAAAGCCCACAAGTTAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
*
522002 TCTTTTCAAAGCCCACAAGTCAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
522030 TCC-TTTCAAAGCCCATAAGTCAATGGCA
1 -CCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
522058 CCCTTTCAAAGCCCACAAGTCAATGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
522086 TCCTTCTCAAATCCCACGAGTCAGTAGCA
1 -CCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
522115 CCCTTTCAAAGCCCATAAGTCAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
522143 CCCTTTCAAAGCCCACGAGTTAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* **
522171 CCTTCTCAAAGCCCATGAGT---TGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
522196 CCCTTTCAAAGCCCACATGTCAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
522224 TCCTTCTCAAATCCCACAAGTCAGTGGCA
1 -CCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
522253 CCCTTTCAAAGCCCATAAGTCAATGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* **
522281 ACTTTTCAAAGCCCATGAGTCAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
522309 CCTTCTCAAAGCCCATAAGTTAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * ** * *
522337 CCCTTCCCAAGCCGAGGAGTTAGTAGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
*
522365 TCC-TTTCAAAAGCCCACAAGTTAGTGGCA
1 -CCTTTTC-AAAGCCCACAAGTCAGTGGCA
522394 TCC-TTTCAAAGCCCACAAGTCAGTGGCA
1 -CCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
522422 CCCTTTCAAAGCCTAAAAGTTAATGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
522450 CCCTCTTCAAAGCCCACAAGTCAATGGTAA
1 -CCTTTTCAAAGCCCACAAGTCAGTGG-CA
* *
522480 CTCTTTTCAAAGTTCGCACAAGTCGGTGGCAA
1 C-CTTTTCAAAG--CCCACAAGTCAGTGGC-A
* * *
522512 GTCTTTTCAAAGCCCACACAAATCGGTGGCA
1 -CCTTTTCAAAG-CC-CACAAGTCAGTGGCA
* *
522543 CC-CTTCTAAAGCCCACAAGTTAGTGGCA
1 CCTTTTC-AAAGCCCACAAGTCAGTGGCA
*
522571 CCCTTTT-AAAGCCCACAAGTCAGTGGTATA
1 -CCTTTTCAAAGCCCACAAGTCAGTGG--CA
* * *
522601 CCCTTTCAAAGCCCATAAGTCGGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
522629 CCCTTTCAAAGCCCACAAGTTAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
*
522657 CCTTTTCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTTTCAAAG-CC-CACAAGTCAGTGGC-A
* * *
522688 TTCTTTCCAAAGACCACACAAGTTAGTGGCA
1 -CCTTTTCAAAG-CC-CACAAGTCAGTGGCA
*
522719 CCTTCTTTTAAAGCCCACACAAGTCAGTGGCAA
1 CC-T-TTTCAAAG-CC-CACAAGTCAGTGGC-A
522752 CCCTTTTCAAA
1 -CCTTTTCAAA
522763 TCACTACTTT
Statistics
Matches: 671, Mismatches: 112, Indels: 65
0.79 0.13 0.08
Matches are distributed among these distances:
25 20 0.03
27 6 0.01
28 366 0.55
29 132 0.20
30 50 0.07
31 5 0.01
32 88 0.13
33 2 0.00
34 2 0.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (28 bp):
CCTTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:522096 original size:85 final size:84
Alignment explanation
Indices: 521920--522762 Score: 771
Period size: 85 Copynumber: 9.8 Consensus size: 84
521910 ATATGACCCT
* * * * *
521920 TTTCAAAGCCCATAAGTCAGTGGCATCCTTCTTAAAGCCCAAAAGTCAGTGGCATCTTTTCAAAG
1 TTTCAAAGCCCATAAGTCAGTGGCACCCTT-TCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
* *
521985 CCCACAAGTTAGTGGCATCT
65 CCCACAAGTCAGTGGCATCC
* * * *
522005 TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCATAAGTCAATGGCACCCTTTCAAAGC
1 TTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
*
522070 CCACAAGTCAATGGCATCC
66 CCACAAGTCAGTGGCATCC
* ** * *
522089 TTCTCAAATCCCACGAGTCAGTAGCACCCTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAG
1 TT-TCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
* *
522154 CCCACGAGTTAGTGGCA-CC
65 CCCACAAGTCAGTGGCATCC
* * *
522173 TTCTCAAAGCCCATGAGT---TGGCACCCTTTCAAAGCCCACATGTCAGTGGCATCCTTCTCAAA
1 TT-TCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT-TCAAA
* *
522235 TCCCACAAGTCAGTGGCACCC
64 GCCCACAAGTCAGTGGCATCC
* * * **
522256 TTTCAAAGCCCATAAGTCAATGGCAACTTTTCAAAGCCCATGAGTCAGTGGCA-CCTTCTCAAAG
1 TTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT-TCAAAG
* * *
522320 CCCATAAGTTAGTGGCACCC
65 CCCACAAGTCAGTGGCATCC
* * * ** * * * * *
522340 TTCCCAAGCCGAGGAGTTAGTAGCATCCTTTCAAAAGCCCACAAGTTAGTGGCATCCTTTCAAAG
1 TTTCAAAGCCCATAAGTCAGTGGCACCCTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
*
522405 CCCACAAGTCAGTGGCACCC
65 CCCACAAGTCAGTGGCATCC
* * * * * * *
522425 TTTCAAAGCCTAAAAGTTAATGGCACCCTCTTCAAAGCCCACAAGTCAATGGTAACTCTTTTCAA
1 TTTCAAAGCCCATAAGTCAGTGGCACCCT-TTCAAAGCCCACAAGTCAGTGG-CAC-CCTTTCAA
* * *
522490 AGTTCGCACAAGTCGGTGGCAAGTCT
63 AG--CCCACAAGTCAGTGGC-A-TCC
* * * * *
522516 TTTCAAAGCCCACACAAATCGGTGGCACCC-TTCTAAAGCCCACAAGTTAGTGGCACCCTTTTAA
1 TTTCAAAG-CC-CATAAGTCAGTGGCACCCTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTCAA
*
522580 AGCCCACAAGTCAGTGGTATACCC
63 AGCCCACAAGTCAGTGGCAT--CC
* * *
522604 TTTCAAAGCCCATAAGTCGGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCTTTTCAAAGC
1 TTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-
* *
522669 CCACACAAGTCGGTGGCAATTC
65 CC-CACAAGTCAGTGGC-ATCC
* * *
522691 TTTCCAAAGACCACACAAGTTAGTGGCACCTTCTTTTAAAGCCCACACAAGTCAGTGGCAACCCT
1 TTT-CAAAG-CC-CATAAGTCAGTGGCACC--CTTTCAAAG-CC-CACAAGTCAGTGGC-ACCC-
522756 TTTCAAA
57 TTTCAAA
522763 TCACTACTTT
Statistics
Matches: 630, Mismatches: 95, Indels: 55
0.81 0.12 0.07
Matches are distributed among these distances:
81 34 0.05
82 34 0.05
83 4 0.01
84 116 0.18
85 208 0.33
86 55 0.09
87 21 0.03
88 39 0.06
89 18 0.03
90 23 0.04
91 14 0.02
92 27 0.04
93 14 0.02
94 13 0.02
95 3 0.00
96 7 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (84 bp):
TTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
CCACAAGTCAGTGGCATCC
Found at i:522420 original size:279 final size:281
Alignment explanation
Indices: 521915--522673 Score: 832
Period size: 279 Copynumber: 2.7 Consensus size: 281
521905 TATCAATATG
* * * *
521915 ACCCTTTTCAAAGCCCATAAGTCAGTGGCATCCTTCTTAAAGCCCAAAAGTCAGTGGCATCTTTT
1 ACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCAAAAGTCAGTGGCACCCTTT
* * *
521980 CAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCA
66 CAAAGCCCACAAGTCAATGGCAACTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCA
* * * *
522045 TAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAATGGCATCCTTCTCAAATCCCACGAGTCAG
131 TAAGTCAATGGCACCCTTCCAAAGCCCACAAGTCAATAGCATCCTTCTCAAAGCCCACAAGTCAG
* ** * *
522110 TAGCACCCTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACGAGTTAGTGGCACCTT
196 TAGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTTAATGGCACCCT
522175 C-TCAAAGCCCATGAGTTGGC
261 CTTCAAAGCCCATGAGTTGGC
* * *
522195 ACCC-TTTCAAAGCCCACATGTCAGTGGCATCCTTCTCAAATCCCACAAGTCAGTGGCACCCTTT
1 ACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCAAAAGTCAGTGGCACCCTTT
* **
522259 CAAAGCCCATAAGTCAATGGCAACTTTTCAAAGCCCATGAGTCAGTGGCA-CCTTCTCAAAGCCC
66 CAAAGCCCACAAGTCAATGGCAACTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCC
* * * * ** * * *
522323 ATAAGTTAGTGGCACCCTTCCCAAGCCGAGGAGTTAGTAGCATCCTT-TCAAAAGCCCACAAGTT
130 ATAAGTCAATGGCACCCTTCCAAAGCCCACAAGTCAATAGCATCCTTCTC-AAAGCCCACAAGTC
* * *
522387 AGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCTAAAAGTTAATGGCACC
194 AGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTTAATGGCACC
** *
522452 CTCTTCAAAGCCCACAAGTCAATGGTA
259 CTCTTCAAAGCCCATGAGT---TGG-C
* * * * * *
522479 ACTCTTTTCAAAGTTCGCACAAGTCGGTGGCAAGT-CTTTTCAAAGCCCACACAAATCGGTGGCA
1 ACCCTTTTCAAAG--CCCACAAGTCAGTGGC-A-TCCTTCTCAAAGCCCA-A-AAGTCAGTGGCA
* * * *
522543 CCC-TTCTAAAGCCCACAAGTTAGTGGCACCCTTTT-AAAGCCCACAAGTCAGTGGTATACCCTT
60 CCCTTTC-AAAGCCCACAAGTCAATGGCA-ACTTTTCAAAGCCCACAAGTCAGTGGCAT--CCTT
** * * * * *
522606 TCAAAGCCCATAAGTCGGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCA-CCTTTTCAAAGCC
121 TCAAAGCCCATAAGTCAATGGCACCCTTCCAAAGCCCACAAGTCAATAGCATCCTTCTCAAAGCC
522670 CACA
186 CACA
522674 CAAGTCGGTG
Statistics
Matches: 398, Mismatches: 61, Indels: 29
0.82 0.12 0.06
Matches are distributed among these distances:
278 6 0.02
279 214 0.54
280 17 0.04
283 3 0.01
284 3 0.01
285 8 0.02
287 13 0.03
288 13 0.03
289 4 0.01
290 49 0.12
291 19 0.05
292 45 0.11
293 4 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (281 bp):
ACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCAAAAGTCAGTGGCACCCTTT
CAAAGCCCACAAGTCAATGGCAACTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCA
TAAGTCAATGGCACCCTTCCAAAGCCCACAAGTCAATAGCATCCTTCTCAAAGCCCACAAGTCAG
TAGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTTAATGGCACCCT
CTTCAAAGCCCATGAGTTGGC
Found at i:522560 original size:149 final size:143
Alignment explanation
Indices: 521915--522762 Score: 604
Period size: 141 Copynumber: 5.9 Consensus size: 143
521905 TATCAATATG
* * * * *
521915 ACCCTTTTCAAAGCCCATAAGTCAGTGGCATCCTTCTT-AAAGCCCA-A-AAGTCAGTGGCATCT
1 ACCC-TTTCAAAGCCCACAAGTCAGTGGCA-CCTT-TTCAAAGCCCACACAAATCGGTGGCACCC
* * * * * *
521977 TTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGG-CATCCTTTCAAAG
63 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTCAATGGACACCCTTTCAAAG
* *
522041 CCCATAAGTCAATGGC
128 CCCACAAGTCAATGGA
* * * * * * *
522057 ACCCTTTCAAAGCCCACAAGTCAATGGCATCCTTCTCAAA-TCC-CACGAGTCAGTAGCACCCTT
1 ACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACACAAATCGGTGGCACCCTT
* ** * *
522120 TCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACGAGTTAGTGG-CA-CCTTCTCAAAGC
65 TCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTCAATGGACACCCTT-TCAAAGC
** *
522183 CCATGAGT---TGGC
129 CCACAAGTCAATGGA
* * * * *
522195 ACCCTTTCAAAGCCCACATGTCAGTGGCATCCTTCTCAAA-TCC-CACAAGTCAGTGGCACCCTT
1 ACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACACAAATCGGTGGCACCCTT
* * * * ** *
522258 TCAAAGCCCATAAGTCAATGGCAACTTTTCAAAGCCCATGAGTCAGTGG-CA-CCTTCTCAAAGC
65 TCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTCAATGGACACCCTT-TCAAAGC
* * * *
522321 CCATAAGTTAGTGGC
129 CCACAAGTCAATGGA
* * * ** * * * ** *
522336 ACCCTTCCCAAGCCGAGGAGTTAGTAGCATCC-TTTCAAAAG-CC-CACAAGTTAGTGGCATCCT
1 ACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTC-AAAGCCCACACAAATCGGTGGCACCCT
* *
522398 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCTAAAAGTTAATGG-CACCCTCTTCAAAG
64 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTCAATGGACACCCT-TTCAAAG
522462 CCCACAAGTCAATGGTA
128 CCCACAAGTCAATGG-A
* * * *
522479 ACTCTTTTCAAAGTTCGCACAAGTCGGTGGCAAGTCTTTTCAAAGCCCACACAAATCGGTGGCAC
1 AC-CCTTTCAAAG--CCCACAAGTCAGTGGC-A-CCTTTTCAAAGCCCACACAAATCGGTGGCAC
* * * * *
522544 CC-TTCTAAAGCCCACAAGTTAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGTATACCCTTTC
61 CCTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTCAATGG-ACACCCTTTC
* ** *
522608 AAAGCCCATAAGTCGGTGGC
124 AAAGCCCACAAGTCAATGGA
* * **
522628 ACCCTTTCAAAGCCCACAAGTTAGTGGCACCTTTTCAAAGCCCACACAAGTCGGTGGCAATTCTT
1 ACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACACAAATCGGTGGC-ACCCTT
* * *
522693 TCCAAAGACCACACAAGTTAGTGGCACCTTCTTTTAAAGCCCACACAAGTCAGTGG-CAACCCTT
65 T-CAAAG-CC-CACAAGTCAGTGGCACC--CTTTCAAAGCCCA-A-AAGTCAATGGAC-ACCC-T
522757 TTCAAA
121 TTCAAA
522763 TCACTACTTT
Statistics
Matches: 587, Mismatches: 86, Indels: 56
0.81 0.12 0.08
Matches are distributed among these distances:
138 128 0.22
140 11 0.02
141 196 0.33
142 25 0.04
143 3 0.01
144 34 0.06
145 3 0.01
146 28 0.05
147 9 0.02
148 35 0.06
149 57 0.10
150 32 0.05
151 9 0.02
152 17 0.03
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (143 bp):
ACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACACAAATCGGTGGCACCCTTT
CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAAAAGTCAATGGACACCCTTTCAAAGCCC
ACAAGTCAATGGA
Found at i:523851 original size:50 final size:50
Alignment explanation
Indices: 523770--523916 Score: 242
Period size: 50 Copynumber: 2.9 Consensus size: 50
523760 AAAAGTCACA
523770 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTTTATC
1 TTTTTACCCAGATGTATCGATACA-TTTTCAATGTATCGATACATTTTATC
* *
523821 -TTTTACCCAGATGTATCGATACATTCTTCAATGTATCGATACATTCTGTC
1 TTTTTACCCAGATGTATCGATACATT-TTCAATGTATCGATACATTTTATC
*
523871 TTTTTACCCAGATGTATCGATACATTTTCAATGTATCAATACATTT
1 TTTTTACCCAGATGTATCGATACATTTTCAATGTATCGATACATTT
523917 AGTTAAAATT
Statistics
Matches: 90, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
49 2 0.02
50 63 0.70
51 25 0.28
ACGTcount: A:0.28, C:0.19, G:0.10, T:0.43
Consensus pattern (50 bp):
TTTTTACCCAGATGTATCGATACATTTTCAATGTATCGATACATTTTATC
Found at i:526495 original size:13 final size:13
Alignment explanation
Indices: 526477--526503 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
526467 ACATGCTGCT
526477 TTGTATCGATACA
1 TTGTATCGATACA
526490 TTGTATCGATACA
1 TTGTATCGATACA
526503 T
1 T
526504 GGCCAAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:526591 original size:13 final size:13
Alignment explanation
Indices: 526570--526600 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
526560 CGATACATGG
*
526570 TACAATGTATCGA
1 TACATTGTATCGA
526583 TACATTGTATCGA
1 TACATTGTATCGA
526596 TACAT
1 TACAT
526601 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:526596 original size:33 final size:32
Alignment explanation
Indices: 526554--526620 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 32
526544 CTATCACTAT
526554 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
526587 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
526620 T
1 T
526621 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:531837 original size:11 final size:12
Alignment explanation
Indices: 531823--531863 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 12
531813 TATTTTTTCA
531823 TTTTTCT-TCTC
1 TTTTTCTCTCTC
531834 TTTTTCTCTCTC
1 TTTTTCTCTCTC
*
531846 -TTTTCTCACT-
1 TTTTTCTCTCTC
531856 TTTTTCTC
1 TTTTTCTC
531864 ACTTGCCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 23 0.85
12 4 0.15
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTCTCTCTC
Found at i:531864 original size:11 final size:11
Alignment explanation
Indices: 531834--531867 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
531824 TTTTCTTCTC
*
531834 TTTTTCTCTCT
1 TTTTTCTCACT
*
531845 CTTTTCTCACT
1 TTTTTCTCACT
531856 TTTTTCTCACT
1 TTTTTCTCACT
531867 T
1 T
531868 GCCAAAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTTTCTCACT
Found at i:532584 original size:20 final size:20
Alignment explanation
Indices: 532561--532617 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
532551 AAGTACCCAG
532561 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
532581 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
532601 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
532618 ATCTTTTTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:534997 original size:97 final size:97
Alignment explanation
Indices: 534822--535059 Score: 390
Period size: 97 Copynumber: 2.5 Consensus size: 97
534812 CCTCGATGAT
*
534822 ACTCCAACCCTATTCCTCTGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCAAGATTCAAATC
1 ACTCCAACCCTATTCTTCTGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCAAGATTCAAATC
534887 TTATTCTCACTTAAATTGTCATCATC-AGGGAC
66 TTATTCTCACTTAAATTGTCATCATCGA-GGAC
*
534919 ACTTCAACCCTATTCTTCTGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCAAGATTCAAATC
1 ACTCCAACCCTATTCTTCTGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCAAGATTCAAATC
*
534984 TTATTCTCGCTTAAATTGTCATCATCGAGGAC
66 TTATTCTCACTTAAATTGTCATCATCGAGGAC
* * *
535016 ACTCCAACCCCATTCCTTC-GAGGGGATACTCCAATCCCGTTTTT
1 ACTCCAACCCTATT-CTTCTGAGGGGATACTCCAACCCCGCTTTT
535060 TTTTCAATCA
Statistics
Matches: 132, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
97 127 0.96
98 5 0.04
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (97 bp):
ACTCCAACCCTATTCTTCTGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCAAGATTCAAATC
TTATTCTCACTTAAATTGTCATCATCGAGGAC
Found at i:542790 original size:19 final size:21
Alignment explanation
Indices: 542747--542798 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
542737 TTCAATAATT
*
542747 TGTATCGATACATTCAGTAAA
1 TGTATCGATACATTAAGTAAA
542768 TGTATCGATACA-TAAGT-AA
1 TGTATCGATACATTAAGTAAA
*
542787 TGTATCAATACA
1 TGTATCGATACA
542799 GTGTATCGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 4 0.14
21 12 0.41
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTAAGTAAA
Found at i:542848 original size:13 final size:13
Alignment explanation
Indices: 542830--542855 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
542820 GCCAAGGAAA
542830 TGTATCGATACAT
1 TGTATCGATACAT
542843 TGTATCGATACAT
1 TGTATCGATACAT
542856 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:545427 original size:52 final size:51
Alignment explanation
Indices: 545200--545438 Score: 306
Period size: 51 Copynumber: 4.6 Consensus size: 51
545190 TTAAGTTTCT
* * *
545200 CAATTTTTCATAATCGGGGATACTTCAACCCCGGTTTTA-TTTCTAAAACA-
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACAC
* * *
545250 CAATTTTCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCGAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
*
545301 CAATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
**
545352 CAATTTTTC-CTTTAATCGGGGATACTCCAACTTCGATTTTA-TTTCAAAAAACAC
1 CAATTTTTCAC---AATCGGGGATACTCCAACCCCGATTTTATTTTC--AAAACAC
*
545406 CAATTTTTCACAATCGAGGATACTCCAACCCCG
1 CAATTTTTCACAATCGGGGATACTCCAACCCCG
545439 TTAATCATCG
Statistics
Matches: 167, Mismatches: 14, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
50 40 0.24
51 61 0.37
52 23 0.14
53 26 0.16
54 16 0.10
55 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
Found at i:545488 original size:28 final size:27
Alignment explanation
Indices: 545418--545492 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 27
545408 ATTTTTCACA
*
545418 ATCGAGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
545445 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
545471 TTCGAGGGGATACTCCAACCCC
1 ATC--GGGGATACTCCAACCCC
545493 TGGTTTTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.09
27 22 0.51
28 17 0.40
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:545517 original size:107 final size:108
Alignment explanation
Indices: 545369--545571 Score: 277
Period size: 107 Copynumber: 1.9 Consensus size: 108
545359 TCCTTTAATC
**
545369 GGGGATACTCCAACTTCGATTTTATTTCAAAAAACACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCAAAAAACACCAATTTTTCACAATCGAGGATACTCCAA
*
545434 CCCCGTTA-ATCAT-CGGGGATACTCCAACCCCGTTATTTTCGA
66 CCCCGTTACATC-TGAGGGGATACTCCAACCCCGTTATTTTCGA
* * * * * *
545476 GGGGATACTCCAACCCCTGGTTTTATTTC-TAAAACATCAATTTTTTATAATCGGGGATACTCCA
1 GGGGATACTCCAACCCC-GATTTTATTTCAAAAAACACCAATTTTTCACAATCGAGGATACTCCA
*
545540 ACCCCGTTACTTCTGAGGGGATACTCCAACCC
65 ACCCCGTTACATCTGAGGGGATACTCCAACCC
545572 TGACTTTATT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
107 55 0.66
108 28 0.34
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (108 bp):
GGGGATACTCCAACCCCGATTTTATTTCAAAAAACACCAATTTTTCACAATCGAGGATACTCCAA
CCCCGTTACATCTGAGGGGATACTCCAACCCCGTTATTTTCGA
Found at i:545542 original size:80 final size:79
Alignment explanation
Indices: 545445--545700 Score: 268
Period size: 79 Copynumber: 3.2 Consensus size: 79
545435 CCCGTTAATC
**
545445 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCTGGTTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCTGACTTTATTTCTAAAA
545510 CATCAATTTTTTATA
65 CATCAATTTTTTATA
* *
545525 ATCGGGGATACTCCAACCCCGTTA-CTTCTGAGGGGATACTCCAACCCTGACTTTATTTCCAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCTGACTTTATTTCTAAAA
* ** * *
545589 TATTGATTTCTCATA
65 CATCAATTTTTTATA
* * ** * * *
545604 TTTGGGGATACTCCAACCCTATTATTTTC-ACGGGGATACTCAAATCCC-GACTTTATTTTTGAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGGATACTCCAA-CCCTGACTTTATTTCTAAA
* *
545667 ACATCTA-TTTCTATA
64 ACATCAATTTTTTATA
* *
545682 ATCGGGGACACTTCAACCC
1 ATCGGGGATACTCCAACCC
545701 TTGTCTTATT
Statistics
Matches: 144, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
78 21 0.15
79 78 0.54
80 45 0.31
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.34
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGACTTTATTTCTAAAAC
ATCAATTTTTTATA
Found at i:552720 original size:21 final size:22
Alignment explanation
Indices: 552696--552745 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
552686 ATTAAATCTT
* *
552696 CTTCAAATTTCTT-ATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
552717 CTTCAAAATACTTCATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
552739 --TCAAAAT
1 CTTCAAAAT
552746 CATCAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 11 0.42
22 8 0.31
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCAAAATACTTCATTTTTCA
Found at i:555150 original size:32 final size:33
Alignment explanation
Indices: 555092--555153 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
555082 CACCTAGATG
*
555092 TATCGATACATTATGCTTTGTATCGATACAATA
1 TATCGATACATTATGCATTGTATCGATACAATA
555125 TATCGATACATGT-T-CATTGTATCGATACA
1 TATCGATACAT-TATGCATTGTATCGATACA
555154 TAGACAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 14 0.52
33 12 0.44
34 1 0.04
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (33 bp):
TATCGATACATTATGCATTGTATCGATACAATA
Found at i:555195 original size:20 final size:20
Alignment explanation
Indices: 555125--555195 Score: 108
Period size: 20 Copynumber: 3.6 Consensus size: 20
555115 CGATACAATA
**
555125 TATCGATACATGTTC-ATTG
1 TATCGATACATGGACAATTG
*
555144 TATCGATACATAGACAATTG
1 TATCGATACATGGACAATTG
555164 TATCGATACATGGACAATTG
1 TATCGATACATGGACAATTG
555184 TATCGATACATG
1 TATCGATACATG
555196 AAACTGACAG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
19 12 0.26
20 35 0.74
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (20 bp):
TATCGATACATGGACAATTG
Found at i:556640 original size:14 final size:14
Alignment explanation
Indices: 556621--556649 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
556611 GCTGGTGCAA
556621 AATTAATTAATTTT
1 AATTAATTAATTTT
556635 AATTAATTAATTTT
1 AATTAATTAATTTT
556649 A
1 A
556650 TTATCATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTAATTAATTTT
Found at i:557998 original size:13 final size:13
Alignment explanation
Indices: 557980--558005 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
557970 TACACCAAGT
557980 ATGTATCGATACA
1 ATGTATCGATACA
557993 ATGTATCGATACA
1 ATGTATCGATACA
558006 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:558000 original size:32 final size:33
Alignment explanation
Indices: 557962--558025 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
557952 TAGCCAAACT
**
557962 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
557994 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
558026 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:560259 original size:21 final size:21
Alignment explanation
Indices: 560226--560275 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
560216 TTGCAAGTTG
*
560226 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
560248 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
560269 AAATAAA
1 AAATAAA
560276 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:565829 original size:52 final size:52
Alignment explanation
Indices: 565751--565879 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
565741 CGAAATATGA
**
565751 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAAAGTATCGATACATCTGGGC
**
565803 AAATTTGCCTGCATGTATCGATACATTTTATAAAGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAAAGTATCGATACATCTGGGC
565855 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
565880 AATATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGAATAAAGTATCGATACATCTGGGC
Found at i:565893 original size:52 final size:51
Alignment explanation
Indices: 565751--565899 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 51
565741 CGAAATATGA
565751 AAATTTGCCTGCATGTATCGATAC-ATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAATT--ATAGTGTATCGATACATCTGGGC
* **
565803 AAATTTGCCTGCATGTATCGATACATTTTATAAAGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-ATTATAGTGTATCGATACATCTGGGC
*
565855 AAATTTGCCTGCATGTATCGATACAAATATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACAATTAT-AGTGTATCGATACA
565900 ATGTATTGAT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 3 0.03
52 82 0.94
54 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACAATTATAGTGTATCGATACATCTGGGC
Found at i:565993 original size:13 final size:13
Alignment explanation
Indices: 565975--565999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
565965 CAAAAAAAAA
565975 TGTATCGATACAT
1 TGTATCGATACAT
565988 TGTATCGATACA
1 TGTATCGATACA
566000 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:566212 original size:11 final size:11
Alignment explanation
Indices: 566198--566224 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
566188 TAAAAATCTA
566198 AAATTGATGGG
1 AAATTGATGGG
566209 AAATTGATGGG
1 AAATTGATGGG
566220 AAATT
1 AAATT
566225 AATTCGTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30
Consensus pattern (11 bp):
AAATTGATGGG
Found at i:566914 original size:58 final size:58
Alignment explanation
Indices: 566805--566914 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 58
566795 TGAAGAAAAA
* **
566805 TGCCAATGTGCTGAGGCAAGGCCAGCGACATCGAGCTTAGGAATGTTAAAGATGAAGG
1 TGCCAATGTGCTGAGGCAAGGCCAGCGACATCGAGCTTAAGAATGACAAAGATGAAGG
** *
566863 TGCCAATGTGCTGATTCAAGGCCAGCGACATTG-GACTTAA-AGATGACAAAGA
1 TGCCAATGTGCTGAGGCAAGGCCAGCGACATCGAG-CTTAAGA-ATGACAAAGA
566915 CGCCAATATG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
57 2 0.05
58 42 0.95
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (58 bp):
TGCCAATGTGCTGAGGCAAGGCCAGCGACATCGAGCTTAAGAATGACAAAGATGAAGG
Found at i:567031 original size:32 final size:33
Alignment explanation
Indices: 566958--567113 Score: 239
Period size: 32 Copynumber: 4.8 Consensus size: 33
566948 GGCTTAGAAA
*
566958 GTTGCCACCGACTTGTGTGGGCTTTAGAGAATG
1 GTTGCCACCGACTTGTGTGGGCTTTAGAGAAGG
*
566991 GTTGCCACCAACTTGTGTGGGCTTTAGAG-AGG
1 GTTGCCACCGACTTGTGTGGGCTTTAGAGAAGG
*
567023 GTTGCCACCGACTTGTGTGGGCTTT-GAG-GGG
1 GTTGCCACCGACTTGTGTGGGCTTTAGAGAAGG
*
567054 GTTGCCACCAACTTGTGTGGGCTTTAG-GAAGG
1 GTTGCCACCGACTTGTGTGGGCTTTAGAGAAGG
*
567086 GTTGCCTCCGACTTGTGTGGGCTTTAGA
1 GTTGCCACCGACTTGTGTGGGCTTTAGA
567114 AGAAAAAGAG
Statistics
Matches: 112, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
31 30 0.27
32 54 0.48
33 28 0.25
ACGTcount: A:0.15, C:0.19, G:0.35, T:0.30
Consensus pattern (33 bp):
GTTGCCACCGACTTGTGTGGGCTTTAGAGAAGG
Found at i:567068 original size:63 final size:65
Alignment explanation
Indices: 566958--567113 Score: 255
Period size: 63 Copynumber: 2.4 Consensus size: 65
566948 GGCTTAGAAA
*
566958 GTTGCCACCGACTTGTGTGGGCTTTAGAGAATGGTTGCCACCAACTTGTGTGGGCTTTA-GAGAG
1 GTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGGA-AG
567022 G
65 G
*
567023 GTTGCCACCGACTTGTGTGGGCTTT-GAG-GGGGTTGCCACCAACTTGTGTGGGCTTTAGGAAGG
1 GTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGGAAGG
*
567086 GTTGCCTCCGACTTGTGTGGGCTTTAGA
1 GTTGCCACCGACTTGTGTGGGCTTTAGA
567114 AGAAAAAGAG
Statistics
Matches: 86, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
63 54 0.63
64 7 0.08
65 25 0.29
ACGTcount: A:0.15, C:0.19, G:0.35, T:0.30
Consensus pattern (65 bp):
GTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGGAAGG
Found at i:567214 original size:29 final size:29
Alignment explanation
Indices: 567150--567382 Score: 229
Period size: 29 Copynumber: 8.0 Consensus size: 29
567140 GCTTACAAAA
* * * *
567150 GAAAAAGAGTGCCACGGAGTTGTCGACTTT
1 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
* * *
567180 GGAAAAGATGCCACCGACTTGTGGGCTTC
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* *
567209 GAAAAAGGGTGCCACTGATTTGTGGGCTTT
1 GAAAAA-GATGCCACTGACTTGTGGGCTTT
* *
567239 G--AAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAAGATGCCACTGACTTGTGGGC-TTT
*
567267 GAAAAAAAATGCCACTGACTTGTGGGCTTT
1 G-AAAAAGATGCCACTGACTTGTGGGCTTT
*
567297 GAAAAAGATGCCATTGACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* * * * *
567326 -TAAAGGTTGCTACTAACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* *
567354 GAAAAATATGCCACTGACTTGTGGACTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
567383 TGAAGGGTGA
Statistics
Matches: 165, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
27 18 0.11
28 28 0.17
29 68 0.41
30 31 0.19
31 20 0.12
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (29 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTT
Done.