genome.fa.s1246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1246
Parameters: 2 7 7 80 10 50 1000
Length:  64375

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566--599	3	11.3	3	87	0	50	29	32	0	38	1.58
2183--2234	20	2.7	20	90	3	79	30	11	17	40	1.85
2268--2318	20	2.5	20	90	0	75	31	15	13	39	1.87
2306--2330	13	1.9	13	100	0	50	36	16	16	32	1.90
5160--5188	14	2.1	14	100	0	58	27	13	6	51	1.66
7794--7821	2	14.0	2	100	0	56	50	0	0	50	1.00
7958--7995	19	2.0	19	90	10	60	50	0	0	50	1.00
8007--8052	24	2.0	24	84	12	62	60	0	0	39	0.97
8027--8065	19	2.1	19	85	0	51	53	0	0	46	1.00
8006--8080	31	2.3	32	77	6	89	61	0	0	38	0.96
8693--8736	23	1.9	23	86	9	63	63	2	0	34	1.07
13043--13078	17	2.1	17	94	0	63	61	13	5	19	1.52
14040--14069	15	2.1	14	93	6	51	60	0	0	40	0.97
16213--16258	17	2.8	17	77	12	51	15	8	21	54	1.68
17023--17120	43	2.3	43	98	0	187	33	18	15	32	1.92
17023--17094	23	3.3	23	67	25	73	33	18	16	31	1.93
17044--17114	20	3.4	20	70	24	65	30	18	15	35	1.92
19514--19989	88	5.4	88	78	6	444	31	22	10	35	1.87
19542--19928	176	2.2	176	86	4	512	32	22	8	35	1.85
28668--28777	19	6.4	19	73	23	118	32	10	19	38	1.85
28688--28777	32	2.8	32	96	0	162	32	10	20	37	1.85
28707--28763	13	3.9	13	74	24	51	35	12	17	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28822--28846	13	1.9	13	100	0	50	32	16	16	36	1.90
28835--28983	52	2.9	52	88	4	212	33	17	16	32	1.93
34149--34581	80	5.4	79	75	10	380	28	28	12	30	1.93
34149--34580	160	2.7	160	81	5	446	28	28	12	30	1.93
34149--34582	240	1.8	238	81	5	543	28	28	12	30	1.93
34536--34607	28	2.6	28	86	4	92	29	37	15	18	1.91
34472--34689	107	2.0	109	84	5	282	28	32	11	27	1.92
34567--34761	80	2.4	81	80	7	195	30	29	10	29	1.90
38064--38888	74	11.2	74	83	5	859	24	23	13	38	1.91
38064--38888	149	5.6	148	82	5	924	24	23	13	38	1.91
40120--40156	20	1.9	19	89	10	58	40	8	16	35	1.78
42529--42877	88	4.0	87	76	4	317	30	22	9	36	1.87
45042--45098	30	1.9	30	89	7	89	31	0	12	56	1.36
45042--45111	30	2.3	29	83	11	88	30	1	12	55	1.46
45463--45488	3	8.7	3	100	0	52	30	0	0	69	0.89
46927--46959	15	2.2	16	89	10	52	63	0	0	36	0.95
48313--48476	50	3.3	50	86	3	240	28	17	19	34	1.95
48717--48765	19	2.6	19	80	0	62	22	24	22	30	1.99
50271--50325	20	2.7	21	85	2	76	41	14	16	27	1.87
50377--50402	13	2.0	13	100	0	52	30	15	15	38	1.88
50357--50424	33	2.1	32	91	2	109	35	19	13	32	1.90
56573--56609	13	2.8	13	95	0	65	32	16	18	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57948--57996	18	2.6	18	83	6	62	85	8	6	0	0.73
57947--57995	13	3.7	13	83	8	55	85	10	4	0	0.71
58984--59936	55	17.3	55	91	3	1464	28	29	20	21	1.98
59717--59864	29	5.3	29	59	18	71	28	31	18	21	1.97
60140--60207	19	3.9	19	72	21	67	36	13	13	36	1.83
60143--60204	32	1.9	32	93	0	106	37	14	14	33	1.87
60247--60272	13	2.0	13	100	0	52	30	15	15	38	1.88
60227--60293	33	2.0	33	88	0	98	25	14	16	43	1.86
62639--62759	51	2.3	52	85	4	165	32	21	11	34	1.89
62748--62824	28	2.7	27	82	11	84	23	31	18	27	1.97

Tables:   1

The End!