Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1247
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49520
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Found at i:3381 original size:30 final size:30
Alignment explanation
Indices: 3347--3422 Score: 111
Period size: 30 Copynumber: 2.6 Consensus size: 30
3337 TTCTCTCCTC
* *
3347 CTCCTGTCATC-CCTCCTCTCTCTATTATCT
1 CTCCTGTC-TCTCCTCCTATCTCTACTATCT
3377 CTCCTGTCTCTCCTCCTATCTCTACTATCT
1 CTCCTGTCTCTCCTCCTATCTCTACTATCT
3407 CT-CTGTCTCTCCTCCT
1 CTCCTGTCTCTCCTCCT
3423 TATCATCCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
29 16 0.37
30 27 0.63
ACGTcount: A:0.08, C:0.45, G:0.04, T:0.43
Consensus pattern (30 bp):
CTCCTGTCTCTCCTCCTATCTCTACTATCT
Found at i:3439 original size:29 final size:29
Alignment explanation
Indices: 3338--3422 Score: 86
Period size: 30 Copynumber: 3.0 Consensus size: 29
3328 TCCATCTTCT
* *
3338 TCTCTCCT-CCTC-CTGTCATC-CCTCCTC
1 TCTCTACTACCTCTCTGTC-TCTCCTCCTA
* *
3365 TCTCTATTATCTCTCCTGTCTCTCCTCCTA
1 TCTCTACTACCTCT-CTGTCTCTCCTCCTA
*
3395 TCTCTACTATCTCTCTGTCTCTCCTCCT
1 TCTCTACTACCTCTCTGTCTCTCCTCCT
3423 TATCATCCCT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
27 6 0.12
28 3 0.06
29 16 0.33
30 24 0.49
ACGTcount: A:0.07, C:0.46, G:0.04, T:0.44
Consensus pattern (29 bp):
TCTCTACTACCTCTCTGTCTCTCCTCCTA
Found at i:5972 original size:475 final size:474
Alignment explanation
Indices: 5066--6524 Score: 2239
Period size: 475 Copynumber: 3.1 Consensus size: 474
5056 GTTTTCATCA
*
5066 AAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATGTTGCCAAATCCTGAAAAGAAT
1 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGTTGCCAAATCCTGAAAAGAAT
5131 GGGGATTAGCATGAATATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACT
66 GGGGATTAGCATGAATATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACT
5196 GTGAAAAAAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTAATGTATCCTAATGAAGGGAATG
131 GTG-AAAAAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTAATGTATCCTAATGAAGGGAATG
*
5261 TGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTA
195 TGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTA
* *
5326 AGGGATGAACTTTGATTTTAAGGAAAATGGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATTAT
260 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
* * *
5391 CAATATCATTTATCATAATGAGGAGAATACGTTTATAATGCCTAATCCCAAAATGAATGAAGATC
325 CAGTATCATTTATCATAATGAGGAGAATACGTTTATAATGCCTAATCACAAAATGAATGAAAATC
* * * *
5456 ATTACTAGAATCCATGATTGTCTCGTTTGAGG-ACCGAACTTAGACTTTACAATAATTGGTGGGA
390 ATTACTAGAATCCATGTTTATCTCATTTGAGGTA-CGAACTTAGACTTTACAAAAATTGGTGGGA
*
5520 AGAAAGACTTTCTTGCAAAACC
454 AAAAAG-CTTTCTTGCAAAACC
* * * *
5542 AATGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGTTGCCAAATCCTAAAAAGAAT
1 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGTTGCCAAATCCTGAAAAGAAT
5607 GGGGATTAGCATGAATATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACT
66 GGGGATTAGCATGAATATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACT
*
5672 ATGAAAAAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTAATGTATCCTAATGAAGGGAATGT
131 GTGAAAAAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTAATGTATCCTAATGAAGGGAATGT
5737 GTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAA
196 GTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAA
*
5802 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATC
261 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATC
* *
5867 AGTATCATTTATCCA-AATGAGGAGAATGCATTTATAATGCCTAATCACAAAATGAATGAAAATC
326 AGTATCATTTAT-CATAATGAGGAGAATACGTTTATAATGCCTAATCACAAAATGAATGAAAATC
* *
5931 ATTACTAGAATCCATGTTTATCTCATTGGAGGTAGGAACTTAGACTTTACAAAAATTGGTGGGAA
390 ATTACTAGAATCCATGTTTATCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGGGAA
5996 AAAAGCCTTTCTTGCAAAACC
455 AAAAG-CTTTCTTGCAAAACC
* *
6017 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
1 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGTTGCCAAATCCTGAAAAGAAT
* * * ** * ** **
6082 AGGGATTAGTATGAGTATTCATGTTGGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAAGG
66 GGGGATTAGCATGAATATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACT
* ** * *
6147 GTGGAAAGAAAAAG-TTTTCTTGCAACACCAAAGCATCAACATAATGTATCCTATTCAAGGGAAT
131 GT-GAAA-AAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTAATGTATCCTAATGAAGGGAAT
* ** * * * * ** *
6211 GTGTTTTAGGTTCCCCATCCTGAAAATAATGGAGACTATTATGAGAATTAATGCTTGTCTTATTT
194 GTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTT
* * *
6276 AGGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG--GAA-AAAATCA
259 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCA
* ** *
6338 TCAGTATCATTTATCATAATGAGGATAATTTGTTTATAGTGCCTAATCACAAAATGAATGAAAAT
324 TCAGTATCATTTATCATAATGAGGAGAATACGTTTATAATGCCTAATCACAAAATGAATGAAAAT
* * *
6403 CATTACTAGAATCCATGTTTATCTCATTTGAGGCT-TGAACTTAGACTTCACAAAAATTGGTTGG
389 CATTACTAGAATCCATGTTTATCTCATTTGAGG-TACGAACTTAGACTTTACAAAAATTGGTGGG
6467 AAAAAAGCTTTTCTTGCAAAACC
453 AAAAAAGC-TTTCTTGCAAAACC
* *
6490 AAAGCATCAATATCGTATATCCTTATAAGAAGACT
1 AAAGCATCAATATCGTGTATCCTTATGAGAAGACT
6525 GTTCATGTTT
Statistics
Matches: 908, Mismatches: 68, Indels: 17
0.91 0.07 0.02
Matches are distributed among these distances:
472 3 0.00
473 176 0.19
474 3 0.00
475 435 0.48
476 285 0.31
477 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (474 bp):
AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGTTGCCAAATCCTGAAAAGAAT
GGGGATTAGCATGAATATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACT
GTGAAAAAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTAATGTATCCTAATGAAGGGAATGT
GTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAA
GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATC
AGTATCATTTATCATAATGAGGAGAATACGTTTATAATGCCTAATCACAAAATGAATGAAAATCA
TTACTAGAATCCATGTTTATCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGGGAAA
AAAGCTTTCTTGCAAAACC
Found at i:6197 original size:159 final size:158
Alignment explanation
Indices: 5066--6293 Score: 598
Period size: 159 Copynumber: 7.7 Consensus size: 158
5056 GTTTTCATCA
* * * * * *
5066 AAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATGTTGCCAAATCCTGAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * * * * *
5131 GGGGATTAGCATGAATATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACT
66 -GGGATTAGTATGAGTATTCATG-TTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAACG
*
5196 GT-GAAAAAAAAAGCTTTTCTTGCAACAA-C
129 GTGGAAAGAAAAAGCTTTTCTTGCAA-AACC
* * * * * * *
5225 AAAGCATCAATGTAATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
1 AAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * * * ***
5289 TGGAGATT-GTTACGAG-AATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAA
65 TGG-GATTAG-TATGAGTATTC-ATG-TTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAA
* * * **
5352 ATGG-GGCAAAG-AAAAGATTTTCATGCAAAAGA
126 ACGGTGG-AAAGAAAAAGCTTTTCTTGCAAAACC
** * * * * ** *
5384 AAATTATCAATATCATTTATCATAATGAGGAGAATACGTTTATAATGCCTAATCC-CAAAATGAA
1 AAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAA
* * * * * ** * *
5448 TGAAGATCATTACT-AGAATCCATGATTGTCTCGTTTGAG-GACCGAACTTAGACTT-TA-CAAT
65 TG-GGATTAGTA-TGAGTATTCATG-TTGTCTTATTTAAGAGA-CGAACTTTGA-TTCTATCAA-
** * *
5509 AATTGGTGGGAAGAAAGA-C-TTTCTTGCAAAACC
124 AAACGGTGGAAAGAAAAAGCTTTTCTTGCAAAACC
* * * * * * *
5542 AATGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGTTGCCAAATCCTAAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * * * * *
5607 GGGGATTAGCATGAATATTCATGTTTATCTTATGTAAGAGACAAACTTTGATTCTATCAAAAACT
66 -GGGATTAGTATGAGTATTCATG-TTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAACG
*
5672 AT-GAAA-AAAAAGCTTTTCTTGCAACAA-C
129 GTGGAAAGAAAAAGCTTTTCTTGCAA-AACC
* * * * * * *
5700 AAAGCATCAATGTAATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
1 AAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * * * * **
5764 TGGAGACT-GTTACGAG-AATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAA
65 TGG-GATTAG-TATGAGTATTC-ATG-TTGTCTTATTTAAGAGACGAACTTTGATTCT-ATCAAA
* * ** **
5827 ATA-GG-GCAAAG-AAAAGATTTTCACGCAAAAGA
125 A-ACGGTGGAAAGAAAAAGCTTTTCTTGCAAAACC
* * * * * *** **
5859 AAATCATCAGTATCATTTATCCAAATGAGGAGAATGCATTTATAATGCCTAATCAC--AAAATGA
1 AAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GA
** * * * * * * ** * *
5922 ATGAAAATCATTACT-AGAATCCATGTTTATCTCATTGGAG-GTAGGAACTTAGACTT-TA-CAA
64 ATG-GGATTAGTA-TGAGTATTCATG-TTGTCTTATTTAAGAG-ACGAACTTTGA-TTCTATCAA
* * *
5983 AAATTGGTGG-GA-AAAAAGCCTTTCTTGCAAAACC
124 AAA-CGGTGGAAAGAAAAAGCTTTTCTTGCAAAACC
* * *
6017 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT
* *
6082 AGGGATTAGTATGAGTATTCATGTTGGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAAGG
66 -GGGATTAGTATGAGTATTCATGTT-GTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAACG
*
6147 GTGGAAAGAAAAAG-TTTTCTTGCAACACC
129 GTGGAAAGAAAAAGCTTTTCTTGCAAAACC
* * * * * * * ** *
6176 AAAGCATCAACATAATGTATCCTATTCA-AGGGAATGTGTTT-TAGGTTCCCCATCCTGAAAATA
1 AAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTTAT-GGTGCCTAATCCTGAAAAGA
* * * * * * *
6239 ATGGAGACTATTATGAGAATTAATGCTTGTCTTATTTAGGGGATGAACTTTGATT
64 ATGG-GATTAGTATGAGTATTCATG-TTGTCTTATTTAAGAGACGAACTTTGATT
6294 TTAAGGAAAA
Statistics
Matches: 775, Mismatches: 231, Indels: 126
0.68 0.20 0.11
Matches are distributed among these distances:
156 5 0.01
157 24 0.03
158 312 0.40
159 409 0.53
160 25 0.03
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (158 bp):
AAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT
GGGATTAGTATGAGTATTCATGTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAACGGT
GGAAAGAAAAAGCTTTTCTTGCAAAACC
Found at i:10280 original size:475 final size:471
Alignment explanation
Indices: 9389--10639 Score: 1563
Period size: 475 Copynumber: 2.6 Consensus size: 471
9379 AAAGCTTTCC
* *
9389 TAAATAAGACAAAAATGAATAGTCATACTAATCCCAATTCTTTTTAGGATTAGGCACCATAAACA
1 TAAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
* *
9454 TAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACC
66 TAGTCTTCTCATAAGGATA-ATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACC
* * * * *
9519 AATTTTTGCAAAGTCTAAGTTCGTGCCTTAAATTAGACAAACATTGATT-TCAGTAATGATCTTC
130 AATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCT-AGTAAAGATCTTC
* * * * *
9583 ATTTATTTTGTGATTAGACACAATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTT
194 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTT
* * *
9648 TTTTTTGGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAAAATTCAACCCATAAATAT
259 TATTTT-GCATGGAAATCTTTTCTTTGC-CT-TTTTCCTTAAAATAAAATTCAACCCATAAATAA
* * * *
9713 GACAAGTATCAATTCTCGTAATAGTCTCCACCCTTTTCAAGATTGGGAACCAAGAAACATTCCCT
321 GACAAGCATCAATTATCGTAACAATCTCCACCCTTTTCAAGATTGGGAACCAAGAAACATTCCCT
* * *
9778 TCATTAGGATACATGGCAGTTATGCTTTGGTGTCACAAGAAAAGATTTTCTTTCCACCGTTTTTT
386 TCATTAGGATACATGACAGTTATGCTTTGGGGTCACAAGAAAAGATTTTCTTTCCACCGTTTTTG
* *
9843 ACATAATCAAAATTTGTCTTT
451 ACAGAATCAAAATTTGCCTTT
* * * **
9864 TAAATAAGACAAATATGAATCA-TCATACTAATCCCCATTATTTTCAGCATTAGGCATGATAAAC
1 TAAATAAGACAAATATGAAT-AGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
* * * *
9928 ATAGTCTTCTCATTAGGATATATGATATTGATGCTTTGGTATCACAAGAAAGGCTTTTTTCCCAC
65 ATAGTCTTCTCATAAGGATA-ATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
* * * *
9993 CAA-TTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTC
129 CAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAAGATCTTC
* * * *
10057 ATTCATTGTGTGATTGGGCACTATGAACACATTCTCCTAATTATGATAAATGATATTGATGATTT
194 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTT
* * ** *
10122 TATTTTGCTTGGAAATCTTTTTTTTGCCTTGTTTCCCTTAAAATCAAGCTTCATCCC-TGAAATA
259 TATTTTGCATGGAAATCTTTTCTTTGCCTT-TTT-CCTTAAAAT-AAAATTCAACCCAT-AAATA
* ** * ** *
10186 AGGCAAGCATTGATTATTGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAA-AAACACTTTC
320 AGACAAGCATCAATTATCGTAACAATCTCCACCCTTTTCAAGATTGGGAACCAAGAAACA-TTCC
* * * * *
10250 CTTCCATTATGATAGATGACA-TTGATGCTTTGGGGTCGCAAGAAAAGTTTTTCTTTCCATCGTT
384 CTT-CATTAGGATACATGACAGTT-ATGCTTTGGGGTCACAAGAAAAGATTTTCTTTCCACCGTT
* * *
10314 TTTGATAGATTCAACATTTGCCTTT
447 TTTGACAGAATCAAAATTTGCCTTT
* * *
10339 TAAATAAGACAAATGTGAATAGTCTTACCAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
1 TAAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
* *
10404 TAGTCTTCTCATAAGG---AT-A-ATTGACCCTTTGGTTTCGCAAG-AAGGGTTTTCTTCCCACC
66 TAGTCTTCTCATAAGGATAATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACC
* *
10463 AATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAATAAAGATATTCA
130 AATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAAGATCTTCA
* * * * *
10528 TTCATTTTGTTATTAGGCACTATAAACACATTCTCTTTATTAGGATAAATGATAATAATGATTTT
195 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTT
* * *
10593 CTTTTGCGTGGAAATCTTTTCATTGCCCTATTTTCCTTAAAATAAAA
260 ATTTTGCATGGAAATCTTTTCTTTG-CCT-TTTTCCTTAAAATAAAA
10640 CACATCCCTT
Statistics
Matches: 665, Mismatches: 97, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
468 8 0.01
469 30 0.05
470 143 0.22
471 9 0.01
472 6 0.01
473 33 0.05
474 179 0.27
475 256 0.38
476 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (471 bp):
TAAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
TAGTCTTCTCATAAGGATAATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCA
ATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAAGATCTTCAT
TCATTTTGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTA
TTTTGCATGGAAATCTTTTCTTTGCCTTTTTCCTTAAAATAAAATTCAACCCATAAATAAGACAA
GCATCAATTATCGTAACAATCTCCACCCTTTTCAAGATTGGGAACCAAGAAACATTCCCTTCATT
AGGATACATGACAGTTATGCTTTGGGGTCACAAGAAAAGATTTTCTTTCCACCGTTTTTGACAGA
ATCAAAATTTGCCTTT
Found at i:12320 original size:475 final size:477
Alignment explanation
Indices: 11432--13541 Score: 2533
Period size: 475 Copynumber: 4.4 Consensus size: 477
11422 GAATCTACTC
* * *
11432 ATTAGGCA-TAATAAACATATTCTCCTGATTAGGATAAATGATATTGATGATTTTTG-TTTTGCG
1 ATTAGGCACT-ATAAACACATTCTCCTTATTAGGATAAATGATATTGATGA--TTTGCTTTTGCA
* * * * *
11495 TGGAAATCTTTTCTTTGTCCTATTTTCCATAAAAT-AAAATTCATCTCTTAAATATGATAAGCAT
63 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCAT
* * * * *
11559 TGATTCGCGTAACAGTCTCCACTCTTTTCAAGATTGGGAACTAAGAA-ACTTTCCCTTTATTAGG
128 TGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGG
* * * *
11623 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC-TTCCTATC-GTTTTTGATTGAA
193 ATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCC-ACCAATTTTTGATAGAA
* * * * * * *
11686 TTAAAGTTTGT--CTAAGAATAAGACAAACATGAATAGTCACACCAATCTCCATTCTTTTTAGGA
257 TCAAAGTTTGTCACTTA-AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGA
* * **
11749 TTAGGCACCATGAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAA
321 TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTGGTTTTGCAAGAA
* * * *
11814 AGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTACCTCAAATGAGACAAACAAGGATC
386 AGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATT
*
11879 CTAGTAATGATCTTCATGCA-ATTGTG
451 CTAGTAATGATCTTCATGCATTTTGTG
* * * * *
11905 ATTAGGCATTATAAACATATTCCCCTTACTAGGATACATGATATTGATGATTTGCTTTTGCATGA
1 ATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTGCTTTTGCATGA
** * * *
11970 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAGGTTTATCCCTTAAATAAGGCAAGCATTGA
66 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATTGA
* * * *
12035 TTCCCGTAACACTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC-TCTATTGGGAT
131 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC-ATTAGGAT
* * *
12099 ACATGACATTGATGCTTTGGAGTCATAAGAAAAGCTTTTCTTTCCA-CAATATTTGATAGAATCG
195 ACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCAATTTTTGATAGAATCA
* * * *
12163 AAGTTTGTCACTTATATACGACAACCATGAATACTCATACTAATCCCGATTCTTTTCAGGATTAG
260 AAGTTTGTCACTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
** *
12228 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTTGCAGGAAAGGC
325 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTGGTTTTGCAAGAAAGGC
* * * * * *
12293 TTTCTTCACACCAATTTTTACAAAGTCTAAGTTCGTGCCTCAAACGAAACAAACATGGATTATAG
390 TTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAG
12358 TAATGATCTTCAATG-ATTTTGTG
455 TAATGATCTTC-ATGCATTTTGTG
* * ** * * * *
12381 ATTAGGCACAATAAACACATTCTCCTCATTAAAATCAATGATATTAAT-ATTT-TTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTGCTTTTGCATGA
* * *
12444 AAATCTTTTCTTTGCTCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCATCGA
66 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATTGA
* * ** *
12509 TTCTCGCAATAGTCTCCACACTTTTCAATATTGGGAACCAAGAA-ACATTCCCTTCATTAGGATA
131 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATA
* * * * *
12573 CATGGCATTGATGCTTTGTTGTCATAAGAAATGGTTTTCTTTCCACCATTTTTTGATAGAATCAA
196 CATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCAATTTTTGATAGAATCAA
* * ** * * *
12638 AGTTTATCTCTTAAATAACTCAAACATGAAT-CATCATGCTAATCCCCATTATTTTCTGCG-TTA
261 AGTTTGTCACTTAAATAAGACAAACATGAATAC-TCATACTAATCCCCATTCTTTTCAG-GATTA
* * **
12701 GGCACCATAAACATAGCCTTTTCA-ACAGGATACACGATATTGATACTTTGGTTTTGTTAGAAAG
324 GGCACCATAAACATAGTCTTCTCATA-AGGATACACGATATTGATACTTTGGTTTTGCAAGAAAG
* * *
12765 GCTTT-TTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACATGGATTCT
388 GCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT
* * ** *
12829 AGTGAGGATCTTCATTTATTTTATG
453 AGTAATGATCTTCATGCATTTTGTG
* * * * *
12854 ATTAGGCACTATAAACACATTCTCCTAATTATGATAAATGATATTTATGATTTTCTTTTGC-TTA
1 ATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTGCTTTTGCATGA
* * * * * * *
12918 CAAATTTTTTCTTTACCCTATTTTTCATAAAATCAAAATTTAT-CCTTGAAATAAGGCAAGCATT
66 -AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT-AAATATGACAAGCA-T
* * * * *
12982 TG-TTCTTGTGACAGACTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGG
128 TGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGG
* * ** * * * *
13046 ATGCAAGACATTGATGCTTTGGTGTTGTAAGAAAAGGTTTTCTTTCCGCCATTTTTTTA-AGAAT
193 ATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCAATTTTTGATAGAAT
* *
13110 CAAAGTTTGTCATTTAAATAAGACAAACATGAATAGC-CATACTAATCCCCATTCATTTCAGGAT
258 CAAAGTTTGTCACTTAAATAAGACAAACATGAATA-CTCATACTAATCCCCATTCTTTTCAGGAT
** * *
13174 TAGGTGCCATAAACATAGTATTCTCATAAGGATACACAATATTGATACTTTGGTTTTGCAAGAAA
322 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTGGTTTTGCAAGAAA
* * *
13239 GGCTTTTTTCCCACAAATTTTTGCAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTC
387 GGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTC
* *
13304 TAATAATGATCTTCATTCATTTTGTG
452 TAGTAATGATCTTCATGCATTTTGTG
* * * * *
13330 ATTAGGCACTATAAACACATTCTCCCTATTAGGATAAATGATAATGATGATTTTCTTTTGCAAGC
1 ATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTGCTTTTGCATGA
* * * *
13395 AAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAATTCATTCCTTAAATATGACAAGGATCGA
66 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATTGA
* ** * * *
13460 TTGTCGTAACAGTCTCCATTCCCTTCAAGATTGGGAACTAAGAACACATTCCCTTCATTATGATG
131 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATA
13525 CATGACATTGATG-TTTG
196 CATGACATTGATGCTTTG
13542 CCTCTTAAAT
Statistics
Matches: 1390, Mismatches: 216, Indels: 60
0.83 0.13 0.04
Matches are distributed among these distances:
471 4 0.00
472 40 0.03
473 279 0.20
474 311 0.22
475 390 0.28
476 361 0.26
477 5 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (477 bp):
ATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTGCTTTTGCATGA
AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATTGA
TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATA
CATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCAATTTTTGATAGAATCAA
AGTTTGTCACTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTGGTTTTGCAAGAAAGGCT
TTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
AATGATCTTCATGCATTTTGTG
Found at i:13912 original size:423 final size:424
Alignment explanation
Indices: 13123--13965 Score: 1201
Period size: 423 Copynumber: 2.0 Consensus size: 424
13113 AGTTTGTCAT
* ** *
13123 TTAAATAAGACAAACATGAATAGCCATACTAATCCCCATTCATTTCAGGATTAGGTGCCATAAAC
1 TTAAATAAGACAAACATGAAGAGCCATACTAATCCCCATTCATTTCAGGATTAGGCACCAAAAAC
* * *
13188 ATAGTATTCTCATAAGGATACACAATATTGATACTTTGGTTTTGCAAGAAAGGCTTTTTTCCCAC
66 ATAGTATTCTCATAAGGATACACAATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTCACAC
*
13253 AAATTTTTGCAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAATAATGATCTTC
131 AAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAATAATGATCTTC
*
13318 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCTATTAGGATAAATGATAATGATGATTT
196 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCTATTAAGATAAATGATAATGATGATTT
* * *
13383 TCTTTTGCAAGCAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAATTCATTCCTTAAATAT
261 TCTTTTGCAAGAAAATCTTTTCATTGCCCTATTTTCCATAAAATCAAAATTCATTCCTTAAATAA
* * * * * * *
13448 GACAAGGATCGATTGTCGTAACAGTCTCCATTCCCTTCAAGATTGGGAACTAAGAACACATTCCC
326 GACAAGCATCAATTCTCGTAACAGTCTCCATTCACTTCAAGATTGGAAACCAAAAACACATTCCC
* ***
13513 TTCATTATGATGCATGACATTGATG-TTTGCCTC
391 TTCATTAAGACAAATGACATTGATGCTTTGCCTC
* * * * * *
13546 TTAAATAAGACAACCATGGAGAGTCATACTAATCCCCATTCTTTTTAGGGTTAGGCACCAAAAAC
1 TTAAATAAGACAAACATGAAGAGCCATACTAATCCCCATTCATTTCAGGATTAGGCACCAAAAAC
13611 ATAGTCA-TCTCATAAGGATACACAATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTCACA
66 ATAGT-ATTCTCATAAGGATACACAATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTCACA
* ** * *
13675 CCAATTTTTGCAAAGTCTAAGTTTGTGCCTCGAATGAGACAAACATGGATTCTAGTAATGATCTT
130 CAAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAATAATGATCTT
* *
13740 CATTTATTTTGTGATTAGGCACTATAAACACATTCT-CCTCATTAAGATAAATGATAATGATGCT
195 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCT-ATTAAGATAAATGATAATGATGAT
*** * *
13804 TTTCTTTTGGTTGAAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAATTCA-TCTTTGAAA
259 TTTCTTTTGCAAGAAAATCTTTTCATTGCCCTATTTTCCATAAAATCAAAATTCATTCCTT-AAA
* * * *
13868 TAAGGCTAGCA-CTAATTCTTGTAACAGTCTCCATTCATTTCAAGATTGGAAACCAAAAACACAT
323 TAAGACAAGCATC-AATTCTCGTAACAGTCTCCATTCACTTCAAGATTGGAAACCAAAAACACAT
*
13932 TCCTTTCATTAAGACAAATGACATTGATGCTTTG
387 TCCCTTCATTAAGACAAATGACATTGATGCTTTG
13966 GGGTCATAAG
Statistics
Matches: 369, Mismatches: 46, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
422 8 0.02
423 356 0.96
424 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (424 bp):
TTAAATAAGACAAACATGAAGAGCCATACTAATCCCCATTCATTTCAGGATTAGGCACCAAAAAC
ATAGTATTCTCATAAGGATACACAATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTCACAC
AAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAATAATGATCTTC
ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCTATTAAGATAAATGATAATGATGATTT
TCTTTTGCAAGAAAATCTTTTCATTGCCCTATTTTCCATAAAATCAAAATTCATTCCTTAAATAA
GACAAGCATCAATTCTCGTAACAGTCTCCATTCACTTCAAGATTGGAAACCAAAAACACATTCCC
TTCATTAAGACAAATGACATTGATGCTTTGCCTC
Found at i:14425 original size:898 final size:899
Alignment explanation
Indices: 9886--15356 Score: 4096
Period size: 949 Copynumber: 5.9 Consensus size: 899
9876 ATATGAATCA
* * * ** * * * *
9886 TCATACTAATCCCCATTATTTTCAGCATTAGGCATGATAAACATAGTCTTCTCATTAGGATATAT
1 TCATACTAATCCCCATTCTTTTCTGCGTTAGGCACCAAAAACATAGTCTTCTCATAAGGATACAC
** * ** * * *
9951 GATATTGATGCTTTGGTATCACAAGAAAGGCTTTTTTCCCACCAA-TTTTGTAAAGTCTAAGTTT
66 GATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTT-CCACCAATTTTTGCAAAGTCTAAGTTC
* * * * * *
10015 ATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTGTGTGATTGGGCACTA
130 GTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTA
* * * * * * *
10080 TGAACACATTCTCCTAATTATGATAAATGATATTGATGATTTTATTTTGCTTGGAAATCTTTTTT
195 TAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGGTTGAAAATCTTTTCT
* * * * ** * * *
10145 TTGCCTTGTTTCCCTTAAAATCAAGCTTCATCCCTGAAATAAGGCAAGCATTGATTATTGTAACA
260 TTGCCCTATTTTCCATAAAATCAAAATTCATCCTTGAAATAAGGCAAGCA-TAATTCTTGTAACA
* * * * * *
10210 ATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACTTTCCTTCCATTATGATAGATGACATTGA
324 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGACAAATGACATTGA
* ** * * * *
10275 TGCTTTGGGGTCGCAAGAAAAGTTTTTCTTTCCA-TCGTTTTTGATAGATTCAACA-TTTGCCTT
389 TGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCACT-GTTTTTTATAGAATCAA-AGTTTGTC-T
** * *
10338 TTAAATAAGACAAATGTGAATAGTCTTACCAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
451 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
** * *
10403 ATAGTCTTCTCATAAGGAT---A-A-TTGACCCTTTGGTTTCGCAAG-AAGGGTTTTCTTCCCAC
516 ATAGTCTTCTCATAAGGATACAATATTTGATGCTTTGGTATCGCAAGAAAGGCTTTT-TTCCCAC
* * * * *
10462 CAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT-AGATTCTAATAAAGATATT
580 AAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT-AGACAAACATGA-ATTCTAGTAAGGATCTT
* * * *
10526 CATTCATTTTGTTATTAGGCACTATAAACACATTCTCTTTATTAGGATAAATGATAATAATGATT
643 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATT
* * ** * *
10591 TTCTTTTGCGTGGAAATCTTTTCATTGCCCTATTTTCCTTAAAAT-AAAACACATCCCTTAATTA
708 TTC-TTTGCATGGAAAACTTTTCATTGCCCTATTTTCCTTAAAATCAAAATTCATTCCTTAAATA
* * * ** * **
10655 TGACAAGCATTGATTCTCCCAACAGTCTCCACTCTTTGGATACATGTCATTGATGCTTGGGTGTC
772 TGACAAGGATCGATTGT-GTAACAGTCTCCATTCTTT---T-CA----A--GA---TTGGG-AAC
* ** * ** *** *** * *
10720 ACAAGAAAAGGTTTTCTTTCCAACATT--TTTG-ATAGA-ACCAAAG-TTTGTTTCTTA-AATAA
822 -CAAGAACA--CATTC---CCATCATTAGGATGCAT-GACATTGAAGCTTTGCCGC-AAGAAAAA
* *
10779 -GA-CAAACA-T--GAATAG-
879 CGATCAACCATTGAGAAAAGT
* * * ** *
10794 TCATATTAATCCTCATTCTTTTCAG-GATTAGGCACCATGAACATAGTCTTCTCATTAGGATACA
1 TCATACTAATCCCCATTCTTTTCTGCG-TTAGGCACCAAAAACATAGTCTTCTCATAAGGATACA
* * *** * *
10858 TGATATTGACGCTTTGGTTGCACAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAGTCTAAG-T
65 CGATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTT-CCACCAATTTTTGCAAAGTCTAAGTT
* * * * * *
10921 CTGTGCTTCCAATGAGACAAACATGGATTCTAGTAA-GAATCTTCATTCATTTTGTGATTGGGTA
129 C-GTGCCTCAAATGAGGCAAACATGGATTCTAGTAATG-ATCTTCATTTATTTTGTGATTAGGCA
* ** * * *
10985 CTATAAACACATTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGACATATTT
192 CTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGGTTGAAAATCTTT
* * * * * * * *
11050 TCTTGGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT-AAATATGACAAGTATCGATTGTCGT
257 TCTTTGCCCTATTTTCCATAAAATCAAAATTCAT-CCTTGAAATAAGGCAAGCAT-AATTCTTGT
* * * * * * * ***
11114 AATAGTCTCTATTCTTTTCAAGATTGGGAACTAAGAACAAATTCCGTTCATTTGGATGCATGACA
320 AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGACAAATGACA
* * ** * * * *
11179 TTTATGCCTTGGTGTCGCAAGGAAAA-CTTTTATTTCCACCGTTTTTGATAGAATCAAAGTTTGT
385 TTGATGCTTTGGTGTCATAA-GAAAAGGTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTTGT
* *
11243 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCATTTTAGGATTAGGCACCATA
449 CT-TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATA
* * * * * * * *
11308 AACATAGTCTTCTCTTTATGATAC-ATGATATTGATGATTTGGTTTTGAAAGAAAGGGTTTTTTC
513 AACATAGTCTTCTCATAAGGATACAAT-AT-TTGATGCTTTGGTATCGCAAGAAAGGCTTTTTTC
** *
11372 CCACTGATTTTTGTAAAGTCTAAGTTAATGCCTCAAATGAGACAAACATG-------G--A--AT
576 CCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT-AGACAAACATGAATTCTAGTAAGGAT
* * * *
11426 C-T-A--C------TCATTAGGCA-TAATAAACATATTCTCCTGATTAGGATAAATGATATTGAT
640 CTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAATGATAATGAT
* * * * * *
11480 GATTTTTGTTTTGCGTGGAAATCTTTTCTTTGTCCTATTTTCCATAAAAT-AAAATTCA-TCTCT
704 GA-TTTT-CTTTGCATGGAAAACTTTTCATTGCCCTATTTTCCTTAAAATCAAAATTCATTC-CT
* * * * * *
11543 TAAATATGATAAGCATTGATTCGCGTAACAGTCTCCACTCTTTTCAAGATTGGGAACTAAGAA-A
766 TAAATATGACAAGGATCGATT-GTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACA
* * * * * * * * ** **
11607 CTTTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCTAT
830 CATTCCCATCATTAGGATGCATGACATTGAAGC-TT--TGCCGCAAGAAAAAC-GATCAACC-A-
11672 CGTTTTTGATTGAATTAAAGTTT
889 -----TTGA--G-A--AAAG--T
*
11695 GTCTAAGAATAAGACAAACATGAATAGTCACACCAATCTCCATTCTTTTTAG-GATTAGGCACCA
1 -TC-----AT-------AC-T--A-A-TC-C-CC-AT-T-C--T-TTTCT-GCG-TTAGGCACCA
** ** **
11759 TGAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTT
38 AAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTT
* * * *
11824 CCCACCAATTTTTGCAAAGTCTAAGTTCGTACCTCAAATGAGACAAACAAGGATCCTAGTAATGA
103 -CCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGA
** * * * * * * * *
11889 TCTTCATGCA-ATTGTGATTAGGCATTATAAACATATTCCCCTTACTAGGATACATGATATTGAT
167 TCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGAT
* ** * ** *
11953 GATTTGCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAGGTTTATCCCTT-
232 GATTTTCTTTTGGTTGAAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAATTCAT-CCTTG
* ** *
12017 AAATAAGGCAAGCATTGATTCCCGTAACACTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
296 AAATAAGGCAAGCA-TAATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
* * * * * *
12082 ATTCC-CTCTATTGGGATACATGACATTGATGCTTTGGAGTCATAAGAAAAGCTTTTCTTTCCAC
360 ATTCCTTTC-ATTAGGACAAATGACATTGATGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCAC
** * * * * * * * * *
12146 AATATTTGATAGAATCGAAGTTTGTCACTTATATACGACAACCATGAATACTCATACTAATCCCG
424 TGTTTTTTATAGAATCAAAGTTTGTC-TTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* *
12211 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA-TTGACGCTT
488 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA--ATATTTGATGCTT
* * * * * * ** * *
12275 TGGTTTTGCAGGAAAGGCTTTCTTCACACCAATTTTTACAAAGTCTAAGTTCGTGCCTCAAACGA
551 TGGTATCGCAAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA-TA
* * * * * * *
12340 AACAAACATGGATTATAGTAATGATCTTCAATGATTTTGTGATTAGGCACAATAAACACATTCTC
615 GACAAACATGAATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
** * * * * * * *
12405 CTCATTAAAATCAATGATATTAAT-ATTTTTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTCC
680 CTCATTAGGATAAATGATAATGATGATTTTCTTTGCATGGAAAACTTTTCATTGCCCTATTTTCC
* * * * * * **
12469 TTAAAATAAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGCAATAGTCTCCACACTTTT
745 TTAAAATCAAAATTCATTCCTTAAATATGACAAGGATCGATTGT-GTAACAGTCTCCATTCTTTT
* * * * * **
12534 CAATATTGGGAACCAAGAA-ACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGTTGTCAT
809 CAAGATTGGGAACCAAGAACACATTCCCATCATTAGGATGCATGACATTGAAGCTTTGCCG-C--
* * * *
12598 AAGAAATGGTTTTCTTTCCACCATTTTTTGATAGAATCAAAGTTTATCTCTTAAATAACTCAAAC
871 AAG-AA-------------A--A-------A-CG-ATC--A----A-C-C---ATTGA--GAAA-
12663 ATGAAT
897 A-G--T
* * * * *
12669 CATCATGCTAATCCCCATTATTTTCTGCGTTAGGCACCATAAACATAGCCTTTTCA-ACAGGATA
1 --TCATACTAATCCCCATTCTTTTCTGCGTTAGGCACCAAAAACATAGTCTTCTCATA-AGGATA
* ** *
12733 CACGATATTGATACTTTGGTTTTGTTAGAAAGGCTTT-TTCTCACCAATTTTTGTAAAGTCTAAG
63 CACGATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTC-CACCAATTTTTGCAAAGTCTAAG
* * * *
12797 TTCATGCCTCAAATGAGGCAAACATGGATTCTAGTGAGGATCTTCATTTATTTTATGATTAGGCA
127 TTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCA
* * * * *
12862 CTATAAACACATTCTCCTAATTATGATAAATGATATTTATGATTTTCTTTTGCTT-ACAAATTTT
192 CTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGGTTGA-AAATCTT
* * * **
12926 TTCTTTACCCTATTTTTCATAAAATCAAAATTTATCCTTGAAATAAGGCAAGCATTTGTTCTTGT
256 TTCTTTGCCCTATTTTCCATAAAATCAAAATTCATCCTTGAAATAAGGCAAGCA-TAATTCTTGT
* *
12991 GACAGACTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATGC-AA-GA
320 AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA--CAAATGA
** *
13054 CATTGATGCTTTGGTGTTGTAAGAAAAGGTTTTCTTTCCGCCAT-TTTTTTA-AGAATCAAAGTT
383 CATTGATGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCC-AC-TGTTTTTTATAGAATCAAAGTT
* * * **
13117 TGTCATTTAAATAAGACAAACATGAATAGCCATACTAATCCCCATTCATTTCAGGATTAGGTGCC
446 TGTC-TTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACC
* * * *
13182 ATAAACATAGTATTCTCATAAGGATACACA-ATATTGATACTTTGGTTTTGCAAGAAAGGCTTTT
510 ATAAACATAGTCTTCTCATAAGGATACA-ATAT-TTGATGCTTTGGTATCGCAAGAAAGGCTTTT
* * * * *
13246 TTCCCACAAATTTTTGCAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAATAAT
573 TTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT-AGACAAACATGAATTCTAGTAAG
13311 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-CTATTAGGATAAATGATAAT
637 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC-ATTAGGATAAATGATAAT
* * *
13375 GATGATTTTCTTTTGCAAGCAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAATTCATTCC
701 GATGATTTTC-TTTGCATGGAAAACTTTTCATTGCCCTATTTTCCTTAAAATCAAAATTCATTCC
** *
13440 TTAAATATGACAAGGATCGATTGTCGTAACAGTCTCCATTCCCTTCAAGATTGGGAACTAAGAAC
765 TTAAATATGACAAGGATCGATTGT-GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
* * * * * *
13505 ACATTCCCTTCATTATGATGCATGACATTGATG-TTTGCCTCTTA-AATAA-GA-CAACCA-TG-
829 ACATTCCCATCATTAGGATGCATGACATTGAAGCTTTGCCGC-AAGAAAAACGATCAACCATTGA
*
13564 G-AGAG-
893 GAAAAGT
* *
13569 TCATACTAATCCCCATTCTTTT-TAGGGTTAGGCACCAAAAACATAGTCATCTCATAAGGATACA
1 TCATACTAATCCCCATTCTTTTCT-GCGTTAGGCACCAAAAACATAGTCTTCTCATAAGGATACA
*
13633 CAATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTCACACCAATTTTTGCAAAGTCTAAGTT
65 CGATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTC-CACCAATTTTTGCAAAGTCTAAGTT
* * *
13698 TGTGCCTCGAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACT
129 CGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACT
* *
13763 ATAAACACATTCTCCTCATTAAGATAAATGATAATGATGCTTTTCTTTTGGTTGAAAATCTTTTC
194 ATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGGTTGAAAATCTTTTC
* *
13828 TTTGCCCTATTTTCCATAAAATCAAAATTCATCTTTGAAATAAGGCTAGCACTAATTCTTGTAAC
259 TTTGCCCTATTTTCCATAAAATCAAAATTCATCCTTGAAATAAGGCAAGCA-TAATTCTTGTAAC
* * *
13893 AGTCTCCATTCATTTCAAGATTGGAAACCAAAAACACATTCCTTTCATTAAGACAAATGACATTG
323 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGACAAATGACATTG
* * * *
13958 ATGCTTTGGGGTCATAAGAAAAGCTTCTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCT
388 ATGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTTGTCT-T
* * * * *
14023 TAAATAAGACAAATATGAATAGTCATTCCAATCGCCATTTTTTTTAGGATTAGGCACCATAAACA
452 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
* * * * *
14088 CAATCTTCTGATAAGGATACAATATTTGATGCTTTGGTGTGGCAAGAAAGGCTTTTTTCCCACAA
517 TAGTCTTCTCATAAGGATACAATATTTGATGCTTTGGTATCGCAAGAAAGGCTTTTTTCCCACAA
* * * * *
14153 ATTTTTGTAGAGTCCAAGTTCATGACTCAAATAAGACAAACATGAATTCTAGCAAGGATTTTCAT
582 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT-AGACAAACATGAATTCTAGTAAGGATCTTCAT
* * * *
14218 TCCTTTTGAGATTAGGTAATATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTC
646 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTC
*
14283 TTCTGCATGGAAAACTTTTCATTGCCCTATTTTTCTTAAAATCAAAATTCATTCCTTAAATATGA
711 TT-TGCATGGAAAACTTTTCATTGCCCTATTTTCCTTAAAATCAAAATTCATTCCTTAAATATGA
* * *
14348 CAAGGATCGATTGCTGTAACAGACTCCATTGTTTTCAAGATTGGGAACCAAGAATACATTCCCAT
775 CAAGGATCGATTG-TGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCAT
* * *
14413 CATTAGGATGCATGACATTGAAGCTTTGTCGCAAGAAAAACCTTTATTTCCACCAGTTTTGATAG
839 CATTAGGATGCATGACATTGAAGCTTTGCCGCAAGAAAAA-C--GA--TCAACCA---TTG--AG
14478 AATCAAAGTTTT
894 -A--AAAG---T
* * * ** * *
14490 CCTCTTAAATAAGATAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCAT
1 --TC---------AT-A-C-T-AAT-C-C---C-CAT--TC--T-TTTCTGCGTT-AGGCACCAA
* * **
14555 AAACATAGTCTTCTCATAAGGATACATGATATTGACACTTTCGTTTTGCAAGAAATTCTTTCTTG
39 AAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTT-
* * * *
14620 CCGCCAATTTTTGCAAAGTCTAAGTTCGTGCCTTAAATTAGGGAAACATGGATT-TCAGTAATGA
103 CCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCT-AGTAATGA
* * * *
14684 TCTTCATTCATTTTGTGATTAGGCACAATAAACATATTCTCCTCATTAGGATAAATGATATTGAT
167 TCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGAT
* * * * * * *
14749 GATTTTTTTTTGGTATGGAAATCTTTTCTTTGCTCTATTTTCCTTGAAATAAAAATTCAACCCTT
232 GATTTTCTTTTGGT-TGAAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAATTC-ATCCTT
* * * * *** * ** *
14814 -AAATATGACAAGTATCGATTCTCACAATAGTCTCCACCCTTTTCAAGATTGGGAACCAAGAA-A
295 GAAATAAGGCAAGCAT-AATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
* * * * *
14877 CATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCAC
359 CATTCCTTTCATTAGGACAAATGACATTGATGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCAC
* * * *
14942 TGTTTTTTATAGAATCAAAATTTGTCTTTTAAATAACACAAACATTAATCGTCATACTAATCCCC
424 TGTTTTTTATAGAATCAAAGTTTGTC-TTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* * * * * *
15007 ATTCTTGTTAGCATTAGGCACGATAAACATAGTCTTCTCATTAGGATATACGATA-TTGATGCCT
488 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG--ATACAATATTTGATGCTT
* * * *
15071 TGGTATCACAAGAAAGGCTTTTTTCCCACCAATTTGTGTAAAGTCTAATTTCATGCCTCAAAT-G
551 TGGTATCGCAAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAG
* *
15135 ACAAACAT-AGATTCTAGTAAGGATCTTCATTCATTTTGTGATTGGGCACTATAAAAACATTCTC
616 ACAAACATGA-ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * * * * * *
15199 CTAATTATGATAAATGATATTGATGATTTTCTTTCGC-TTGAAAATCTTTTCTTTGCCTTATGTC
680 CTCATTAGGATAAATGATAATGATGATTTTCTTT-GCATGGAAAA-CTTTTCATTGCCCTATTTT
** * * * * * * * * * *
15263 CCTCGAAATCAAACTTTATCCCTGAAATAAGGCAAGCATTGATTATTGTAATAGTCTCCATTCTT
743 CCTTAAAATCAAAATTCATTCCTTAAATATGACAAGGATCGATT-GTGTAACAGTCTCCATTCTT
* *
15328 TTCAAGATTGGGAACCAAAAACACTTTCC
807 TTCAAGATTGGGAACCAAGAACACATTCC
15357 TTCCATTATG
Statistics
Matches: 3728, Mismatches: 583, Indels: 465
0.78 0.12 0.10
Matches are distributed among these distances:
873 5 0.00
875 3 0.00
876 9 0.00
878 3 0.00
879 6 0.00
880 8 0.00
881 5 0.00
883 2 0.00
884 3 0.00
886 1 0.00
890 2 0.00
891 2 0.00
892 1 0.00
893 45 0.01
894 86 0.02
895 1 0.00
896 1 0.00
897 5 0.00
898 384 0.10
899 387 0.10
900 1 0.00
901 1 0.00
902 3 0.00
903 4 0.00
904 1 0.00
905 2 0.00
906 5 0.00
907 21 0.01
908 433 0.12
909 9 0.00
910 4 0.00
912 1 0.00
913 2 0.00
914 66 0.02
915 11 0.00
917 4 0.00
918 1 0.00
919 3 0.00
920 1 0.00
921 2 0.00
922 3 0.00
923 4 0.00
924 1 0.00
925 1 0.00
926 1 0.00
927 10 0.00
928 431 0.12
929 69 0.02
930 4 0.00
931 2 0.00
932 3 0.00
933 1 0.00
934 1 0.00
935 2 0.00
936 3 0.00
937 2 0.00
938 1 0.00
939 3 0.00
940 1 0.00
941 2 0.00
942 2 0.00
944 4 0.00
945 1 0.00
946 49 0.01
947 289 0.08
948 419 0.11
949 685 0.18
950 31 0.01
951 107 0.03
952 30 0.01
954 1 0.00
955 2 0.00
956 2 0.00
957 1 0.00
958 2 0.00
959 1 0.00
960 1 0.00
961 1 0.00
962 1 0.00
963 2 0.00
970 2 0.00
971 2 0.00
972 2 0.00
973 1 0.00
974 3 0.00
975 5 0.00
978 1 0.00
979 1 0.00
981 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (899 bp):
TCATACTAATCCCCATTCTTTTCTGCGTTAGGCACCAAAAACATAGTCTTCTCATAAGGATACAC
GATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTCCACCAATTTTTGCAAAGTCTAAGTTCG
TGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAT
AAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGGTTGAAAATCTTTTCTT
TGCCCTATTTTCCATAAAATCAAAATTCATCCTTGAAATAAGGCAAGCATAATTCTTGTAACAGT
CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGACAAATGACATTGATG
CTTTGGTGTCATAAGAAAAGGTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTTGTCTTTAAA
TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGT
CTTCTCATAAGGATACAATATTTGATGCTTTGGTATCGCAAGAAAGGCTTTTTTCCCACAAATTT
TTGTAAAGTCTAAGTTCATGCCTCAAATAGACAAACATGAATTCTAGTAAGGATCTTCATTCATT
TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTGC
ATGGAAAACTTTTCATTGCCCTATTTTCCTTAAAATCAAAATTCATTCCTTAAATATGACAAGGA
TCGATTGTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCATCATTAGG
ATGCATGACATTGAAGCTTTGCCGCAAGAAAAACGATCAACCATTGAGAAAAGT
Found at i:15221 original size:474 final size:476
Alignment explanation
Indices: 13538--15804 Score: 2599
Period size: 476 Copynumber: 4.8 Consensus size: 476
13528 GACATTGATG
* * * * *
13538 TTTGCCTCTTAAATAAGACAACCATGGAGAGTCATACTAATCCCCATTCTTTTTAGGGTTAGGCA
1 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCA
* * * *
13603 CCAAAAACATAGTCATCTCATAAGGATACACAATATTGACACTTTGGTTTTGCAAGAAAGGCTTT
66 CCATAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
* ** *
13668 CTTCACACCAATTTTTGCAAAGTCTAAGTTTGTGCCTCGAATGAGACAAACATGGATTCTAGTAA
131 CTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAAT-AGACAAACATGGATTCTAGTAA
* * *
13733 TGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATAAT
195 GGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAAT
* * *
13798 GATGCTTTTCTTTTGGT-TGAAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAATTCAT-C
260 GATGATTTTCTTTTGGTATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCC
* * * * * * * * *
13861 TTTGAAATAAGGCTAGCA-CTAATTCTTGTAACAGTCTCCATTCATTTCAAGATTGGAAACCAAA
325 CTT-AAATATGACAAGCATC-GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAG
* * * * * *
13925 AACACATTCCTTTCATTAAGACAAATGACATTGATGCTTTGGGGTCATAAGAAAAGCTTCTCTTT
388 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTT
*
13990 CCACTGTTTTTGATAGAATCAAAG
453 CCACTGTTTTTGATAGAATCAAAA
* * * * *
14014 TTTGTCTCTTAAATAAGACAAATATGAATAGTCATTCCAATCGCCATTTTTTTTAGGATTAGGCA
1 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCA
* * * ** * *
14079 CCATAAACACAATCTTCTGATAAGGATACA--ATATTTGATGCTTTGGTGTGGCAAGAAAGGCTT
66 CCATAAACATAGTCTTCTCATAAGGATACACGATA-TTGACACTTTGGTTTCGCAAGAAAGGCTT
* * * * * * * *
14142 TTTTCCCACAAATTTTTGTAGAGTCCAAGTTCATGACTCAAATAAGACAAACATGAATTCTAGCA
130 TCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAAT-AGACAAACATGGATTCTAGTA
* * * * *
14207 AGGATTTTCATTCCTTTTGAGATTAGGTAATATAAACACATTCTCCTCATTAGGATAAATGATAA
194 AGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAA
* * * * * *
14272 TGATGATTTTCTTCT-GCATGGAAAACTTTTCATTGCCCTATTTTTCTTAAAATCAAAATTCATT
259 TGATGATTTTCTTTTGGTATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * *
14336 CCTTAAATATGACAAGGATCGATTGCT-GTAACAGACTCCATTGTTTTCAAGATTGGGAACCAAG
324 CCTTAAATATGACAAGCATCGATT-CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAG
* * * * * * * *
14400 AATACATTCCCATCATTAGGATGCATGACATTGAAGCTTT---GTCGCAAGAAAAACCTTTATTT
388 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTT
* *
14462 CCACCAG-TTTTGATAGAATCAAAG
453 CCA-CTGTTTTTGATAGAATCAAAA
* * *
14486 TTT-TCCTCTTAAATAAGATAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGC
1 TTTGT-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGC
* * * **
14550 ACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACACTTTCGTTTTGCAAGAAATTCTT
65 ACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTT
* * * * **
14615 TCTTGCCGCCAATTTTTGCAAAGTCTAAGTTCGTGCCTTAAATTAGGGAAACATGGATT-TCAGT
130 TCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAA-TAGACAAACATGGATTCT-AGT
* * *
14679 AATGATCTTCATTCATTTTGTGATTAGGCACAATAAACATATTCTCCTCATTAGGATAAATGATA
193 AAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * * *
14744 TTGATGATTTTTTTTTGGTATGGAAATCTTTTCTTTGCTCTATTTTCCTTGAAATAAAAATTCAA
258 ATGATGATTTTCTTTTGGTATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT
* ** * **
14809 CCCTTAAATATGACAAGTATCGATTCTCACAATAGTCTCCACCCTTTTCAAGATTGGGAACCAAG
323 CCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAG
* * *
14874 AA-ACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTT
388 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTT
*
14938 CCACTGTTTTTTATAGAATCAAAA
453 CCACTGTTTTTGATAGAATCAAAA
* * * * * *
14962 TTTGTCTTTTAAATAACACAAACATTAATCGTCATACTAATCCCCATTCTTGTTAGCATTAGGCA
1 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCA
* * * ** * * *
15027 CGATAAACATAGTCTTCTCATTAGGATATACGATATTGATGCCTTGGTATCACAAGAAAGGCTTT
66 CCATAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
* * * * *
15092 TTTCCCACCAATTTGTGTAAAGTCTAATTTCATGCCTCAAAT-GACAAACATAGATTCTAGTAAG
131 CTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATAGACAAACATGGATTCTAGTAAG
* * * * *
15156 GATCTTCATTCATTTTGTGATTGGGCACTATAAAAACATTCTCCTAATTATGATAAATGATATTG
196 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATG
* * * * * * ** * *
15221 ATGATTTTCTTTCGCT-TGAAAATCTTTTCTTTGCCTTATGTCCCTCGAAATCAAACTTTATCCC
261 ATGATTTTCTTTTGGTATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * * * * *
15285 TGAAATAAGGCAAGCATTGATTATTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
326 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
* * * * * *
15350 AC-TTTCCTTCCATTATGATAGATGACATTAATGCTTTGGGGTCGCAAGAAAAGCTTTTTTTTCC
391 ACATTCCCTT-CATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCC
* * *
15414 ACCGTTTTTGATAGAATGAACA
455 ACTGTTTTTGATAGAATCAAAA
** * * *
15436 TTTGTCTCTTAAATAAGACAAATGTGAATAGTCATGCCAATCCTCATTCTTTTTAGGATTAGGCA
1 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCA
* * *
15501 CCATAAACATAGTCTTCTGACAAGGATACACGATATTGACAATTTGGTTTCGCAAGAAAGGCTTT
66 CCATAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
** *
15566 CTTCCCATGAATTTTTGCAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAA
131 CTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAAT-AGACAAACATGGATTCTAGTAA
* * * * *
15631 AGATATTCATTCATTTTGTGATTAAGCACTATAAAGACATTCTCCTCGTTAGGATAAATGATAAT
195 GGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAAT
* * * * *
15696 GATGATTTTCTTTT-GCATGGAAATCTTTTCATTGTCTTATTTTCCTTAAAATCAAAATACATCC
260 GATGATTTTCTTTTGGTATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCC
* * * * *
15760 CTTAATTATGACAAGCATTGATTCTCGCAACAGTCTTCACTCTTT
325 CTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
15805 GGATACATGT
Statistics
Matches: 1481, Mismatches: 286, Indels: 48
0.82 0.16 0.03
Matches are distributed among these distances:
471 1 0.00
472 119 0.08
473 271 0.18
474 400 0.27
475 268 0.18
476 421 0.28
477 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCA
CCATAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
CTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATAGACAAACATGGATTCTAGTAAG
GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATG
ATGATTTTCTTTTGGTATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAAC
ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCCA
CTGTTTTTGATAGAATCAAAA
Found at i:21746 original size:9 final size:9
Alignment explanation
Indices: 21734--21794 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
21724 CTCTCTCTAT
21734 TATCTCTCC
1 TATCTCTCC
21743 TATCTCTCC
1 TATCTCTCC
* *
21752 T-CCTAT-C
1 TATCTCTCC
*
21759 -ATCCCTCC
1 TATCTCTCC
*
21767 TATCTCTAC
1 TATCTCTCC
21776 TATCTCTCC
1 TATCTCTCC
*
21785 TGTCTCTCC
1 TATCTCTCC
21794 T
1 T
21795 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:21754 original size:12 final size:12
Alignment explanation
Indices: 21739--21773 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
21729 TCTATTATCT
21739 CTCCTATCTCTC
1 CTCCTATCTCTC
21751 CTCCTATCATC-C
1 CTCCTATC-TCTC
21763 CTCCTATCTCT
1 CTCCTATCTCT
21774 ACTATCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:21761 original size:42 final size:42
Alignment explanation
Indices: 21706--21812 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
21696 TTCTTCTCTC
* *
21706 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
21748 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
21790 CTCCTCCTATCATCCCTCCTCTC
1 CTCCTCCTATCATCCCTCCTCTC
21813 AATTCTTTCT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.10, C:0.48, G:0.02, T:0.40
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:21824 original size:42 final size:40
Alignment explanation
Indices: 21706--21824 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 40
21696 TTCTTCTCTC
* *
21706 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCT-TCTT-TCTCTCCTATCT
* * *
21748 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCC--TCTCTTCTTTCTCTCCTATCT
21790 CTCCTCCTATCATCCCTCCTCTCAATTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTC--TTCTTTCTCT
21825 TTGAGGGCTA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
40 4 0.06
42 56 0.85
43 1 0.02
44 5 0.08
ACGTcount: A:0.11, C:0.45, G:0.02, T:0.42
Consensus pattern (40 bp):
CTCCTCCTATCATCCCTCCTCTCTTCTTTCTCTCCTATCT
Found at i:23733 original size:158 final size:158
Alignment explanation
Indices: 23559--25195 Score: 574
Period size: 158 Copynumber: 10.3 Consensus size: 158
23549 TTCTTTTCAG
* * * * * *
23559 GATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACAATAAATATATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAG
**
23624 AAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACA-CA
66 AAAGGCTTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATCA
*
23687 AATTCTAGCAAGGATCTTCATTCATTTTGT
131 AATTCTA-CAA-GATCTCCATTCATTTTGT
* * * **
23717 GATTAGGCACAATAAATATATTCTCCTCATTAGGATAAATGATATTGATGATTTTTGTTTGGCAT
1 GATTAGGCACAATAAATATATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTTCACA-
* * ** * * * ** ** * *
23782 TGAAA-TCTTTTCTTTGC-TCTATTTTCCT-TAAAATAAAAATTCAACCCTTAAAT-ATGACAAG
64 AGAAAGGCTTTTCTTCCCACCAATTTT--TGTAAAGTCTAAATTCATGCCTCAAATGA-GACAAA
* * * * ***
23843 TATC-AATTCTCACAATAGTCTCCA-CCCTTATCAA
126 CATCAAATTCT-ACAAGA-TCTCCATTCATT-TTGT
* * * * * ** *
23877 GTTTGGGAACCAA-GAA-ACATTC-CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACA
1 GATTAGGCA-CAATAAATATATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCACA
* *** * * * * * *
23939 AGAAAAGG-TTTTCTTTCCACTGTTTTTTATGGAA-TCTAAATT--TGTCTTTTAAATAACACAA
64 AG-AAAGGCTTTTCTTCCCACCAATTTTTGT-AAAGTCTAAATTCATG-C-CTCAAATGAGACAA
* * * *
24000 ACATGAATTGTCATACTA-ATCCCCATTC-TTTTCAG-
125 ACATCAAAT-TC-TACAAGATCTCCATTCATTTT--GT
* * * * * *
24035 GATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACAATAAATATATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAG
* * *
24100 AAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTATATTCATGCCTCAAATGAGGCAAACA-CG
66 AAAGGCTTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATCA
*
24163 AATTCTAGCAAGGATCTTCATTCATTTTGT
131 AATTCTA-CAA-GATCTCCATTCATTTTGT
* * * **
24193 GATTAGGCACAATAAATATATTCTCCTCATTAGGATAAATGATATTGATGATTTTTGTTTGGCAT
1 GATTAGGCACAATAAATATATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTTCACA-
* * ** * * * ** ** * *
24258 TGAAA-TCTTTTCTTTGC-TCTATTTTCCT-TAAAATAAAAATTCAACCCTTAAAT-ATGACAAG
64 AGAAAGGCTTTTCTTCCCACCAATTTT--TGTAAAGTCTAAATTCATGCCTCAAATGA-GACAAA
* * * * * ***
24319 TATC-AATTCTCATAATAGTCTCCA-CCCTTATCAA
126 CATCAAATTCT-ACAAGA-TCTCCATTCATT-TTGT
* * * * * ** *
24353 GTTTGGGAACCAA-GAA-ACATTC-CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACA
1 GATTAGGCA-CAATAAATATATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCACA
* *** * * * * * *
24415 AGAAAAGG-TTTTCTTTCCACTGTTTTTTATGGAA-TCTAAATT--TGTCTTTTAAATAACACAA
64 AG-AAAGGCTTTTCTTCCCACCAATTTTTGT-AAAGTCTAAATTCATG-C-CTCAAATGAGACAA
* * * *
24476 ACATGAATTGTCATACTA-ATCCCCATTC-TTTTCAG-
125 ACATCAAAT-TC-TACAAGATCTCCATTCATTTT--GT
* * * * * * * *
24511 GATTAGGCACCACAAATTTAGTCTTCTCAATAAGATACACGATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACAATAAATATATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAG
* ** *
24576 AAAGGCTTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACA-CG
66 AAAGGCTTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATCA
*
24640 AATTCTAACAAGGATCTTCATTCATTTTGT
131 AATTCT-ACAA-GATCTCCATTCATTTTGT
* * * * **
24670 GATTAGGCACAATAAATATATTATCCTCATTAGGATAAATGATATTGATGATTTTTGTTTGGCAT
1 GATTAGGCACAATAAATATATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTTCACA-
* * ** * * * ** ** * *
24735 GGAAA-TCTTTTCTTTGC-TCTATTTTCCT-TAAAATAAAAATTCAACCCTTAAAT-ATGACAAG
64 AGAAAGGCTTTTCTTCCCACCAATTTT--TGTAAAGTCTAAATTCATGCCTCAAATGA-GACAAA
* * * * ***
24796 TATC-AATTCTCACAATAGTCTCCA-CCCTTATCAA
126 CATCAAATTCT-ACAAGA-TCTCCATTCATT-TTGT
* * * * * *
24830 GTTTGGGAACCAA-GAA-ACATTC-CCTTCATTAGGATACATGGA-ATTGATGCTTTGGTGTCAC
1 GATTAGGCA-CAATAAATATATTCTCC-TCATTAGGATACAT-GATATTGATGCTTTGGTTTCAC
* *** * * ** *** * * *
24891 AAGAAAAGG-TTTTCTTTCCACTGTTTTTTATGGAA-TCTAAATTTGTATTTTAAATAACACAAA
63 AAG-AAAGGCTTTTCTTCCCACCAATTTTTGT-AAAGTCTAAATTCATGCCTCAAATGAGACAAA
* * * * **
24954 CATGAATTGTCATACTA-ATCCCCATT-ATTTTCA
126 CATCAAAT-TC-TACAAGATCTCCATTCATTTTGT
* * * * * * *
24987 GCATTCGGCACGATAAACATAGTCTTCTCATTAGGATATATGATATTGATGCTTTGGTATCACAA
1 G-ATTAGGCACAATAAATATATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAA
*
25052 GAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT-
65 GAAAGGCTTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATC
** * *
25115 GGATTCTGATAAGGATCTTCATTCATTTTGT
130 AAATTCT-ACAA-GATCTCCATTCATTTTGT
* * * * * *
25146 GATTGGGCACTAT-AATCACATTCTCCTAATTATGATAAATGATATTGATG
1 GATTAGGCACAATAAAT-ATATTCTCCTCATTAGGATACATGATATTGATG
25196 ATTTTCTTTT
Statistics
Matches: 1041, Mismatches: 329, Indels: 218
0.66 0.21 0.14
Matches are distributed among these distances:
155 3 0.00
156 9 0.01
157 34 0.03
158 392 0.38
159 382 0.37
160 195 0.19
161 26 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
GATTAGGCACAATAAATATATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAG
AAAGGCTTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATCA
AATTCTACAAGATCTCCATTCATTTTGT
Found at i:24842 original size:477 final size:476
Alignment explanation
Indices: 23428--25771 Score: 3529
Period size: 476 Copynumber: 4.9 Consensus size: 476
23418 GTTTTCATCA
23428 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
1 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
23493 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
66 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
23558 GGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAA
131 GGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAA
*
23623 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACAA
196 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACGA
23688 ATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGAT
261 ATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGAT
*
23753 AAATGATATTGATGATTTTTGTTTGGCATTGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAA
326 AAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAA
23818 AAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTGG
391 AAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTGG
23883 GAACCAAGAAACATTCCCTTC
456 GAACCAAGAAACATTCCCTTC
23904 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
1 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
23969 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
66 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
24034 GGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAA
131 GGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAA
* *
24099 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATATTCATGCCTCAAATGAGGCAAACACGA
196 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACGA
24164 ATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGAT
261 ATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGAT
*
24229 AAATGATATTGATGATTTTTGTTTGGCATTGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAA
326 AAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAA
*
24294 AAATTCAACCCTTAAATATGACAAGTATCAATTCTCATAATAGTCTCCACCCTTATCAAGTTTGG
391 AAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTGG
24359 GAACCAAGAAACATTCCCTTC
456 GAACCAAGAAACATTCCCTTC
24380 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
1 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
24445 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
66 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
* *
24510 GGATTAGGCACCACAAATTTAGTCTTCTCAATAAGATACACGATATTGATGCTTTGGTTTCACAA
131 GGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAA
24575 GAAAGGCTTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACG
196 GAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACG
* *
24640 AATTCTAACAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTATCCTCATTAGGA
260 AATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGA
24705 TAAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATA
325 TAAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATA
24770 AAAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTG
390 AAAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTG
24835 GGAACCAAGAAACATTCCCTTC
455 GGAACCAAGAAACATTCCCTTC
*
24857 ATTAGGATACATGGAATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
1 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
* *
24922 GGAATCTAAATTTGTATTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTATTTTCA
66 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
* * * ** * * * *
24987 GCATTCGGCACGATAAACATAGTCTTCTCATTAGGATATATGATATTGATGCTTTGGTATCACAA
131 GGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAA
* * *
25052 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
196 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACGA
* * * * * *
25117 ATTCT-GATAAGGATCTTCATTCATTTTGTGATTGGGCACTAT-AATCACATTCTCCTAATTATG
261 ATTCTAG-CAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAAT-ATATTCTCCTCATTAGG
* * * *
25180 ATAAATGATATTGATGATTTTCT-TTT-GCTTGGAAATCTTTTCTTTGC-CTTAGTTCCCTTGAA
324 ATAAATGATATTGATGATTTT-TGTTTGGCATGGAAATCTTTTCTTTGCTC-TATTTTCCTTAAA
* * * * * * * ** * *** * * ** * *
25242 ATCAAACTTCATCCCTGAAATAAGGCAAGCATTGATTATTGTAACAGTCACCATTCTTTTCAAGA
387 ATAAAAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGT
* * * *
25307 TTAGGAACCAACAACACTTTCCTTTC
452 TTGGGAACCAAGAA-ACATTCCCTTC
* * * * * * * ** *
25333 ATTATGATAGATGACATTGATGCTTTGGGGTCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGAT
1 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
* * * * * * * *
25398 AGAATC-AACATTTGTCTCTTAAATAAGACAAACGTGAATAGTCATACCAATCCTCATCCCTTTT
66 GGAATCTAA-ATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCAT-TCTTTT
** ** **
25462 -AGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATTGACACTTTGGTTTTG
129 CAGGATTAGGCACCATAAATTTAGTCTTCTCAAT-AGGATACACGATATTGATGCTTTGGTTTCA
* * * * *
25525 CAAGAAGGGCTTTCTTCCCGCCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
193 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACA
* * * * * * * * ** *
25590 TGGATTCTAGTAAGGATATTCATGCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAG
258 CGAATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAG
* * * * *
25655 GATAAATGATAATGATGATTTTCT-TTT-GCATGAAAATATTTTCGTTGCCCTATTTTCCTTAAA
323 GATAAATGATATTGATGATTTT-TGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAA
* * * * * * * *
25718 ATCAAAATACATCCCTTAATTATGACAAGCATCGATTCTCGCAACAGTCTCCAC
387 ATAAAAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCAC
25772 TATCTGGATA
Statistics
Matches: 1727, Mismatches: 129, Indels: 24
0.92 0.07 0.01
Matches are distributed among these distances:
474 1 0.00
475 94 0.05
476 1167 0.68
477 465 0.27
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
GGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAA
GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACGA
ATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGAT
AAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAA
AAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTGG
GAACCAAGAAACATTCCCTTC
Found at i:25336 original size:953 final size:952
Alignment explanation
Indices: 23428--25771 Score: 3551
Period size: 953 Copynumber: 2.5 Consensus size: 952
23418 GTTTTCATCA
23428 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
1 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
23493 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
66 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
*
23558 GGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCACAA
131 GGATTAGGCACCATAAATTTAGTCTTCTCAATAAGATACACGATATTGATGCTTTGGTTTCACAA
*
23623 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACAA
196 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACGA
23688 ATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGAT
261 ATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGAT
*
23753 AAATGATATTGATGATTTTTGTTTGGCATTGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAA
326 AAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAA
23818 AAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTGG
391 AAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTGG
*
23883 GAACCAAGAAACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGT
456 GAACCAAGAAACATTCCCTTCATTAGGATACATGGAATTGATGCTTTGGTGTCACAAGAAAAGGT
*
23948 TTTCTTTCCACTGTTTTTTATGGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCA
521 TTTCTTTCCACTGTTTTTTATGGAATCTAAATTTGTATTTTAAATAACACAAACATGAATTGTCA
* * **
24013 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGAT
586 TACTAATCCCCATTATTTTCAGCATTAGGCACCATAAACATAGTCTTCTCAATAGGATACACGAT
*
24078 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATATTCATG
651 ATTGATGCTTTGGTATCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATATTCATG
*
24143 CCTCAAATGAGGCAAACACGAATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAA
716 CCTCAAATGAGACAAACACGAATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAA
* *
24208 ATATATTCTCCTCATTAGGATAAATGATATTGATGATTTTTGTTTGGCATTGAAATCTTTTCTTT
781 ATACATTCTCCTAATTAGGATAAATGATATTGATGATTTTTGTTTGGCATTGAAATCTTTTCTTT
* * * * * * *
24273 GCTCTATTTTCCTTAAAATAAAAATTCAACCCTTAAATATGACAAGTATCAATTCTCATAATAGT
846 GCTCTAGTTCCCTTAAAATAAAAATTCAACCCTGAAATAAGACAAGCATCAATTATCATAACAGT
* * * *
24338 CTCCACCCTTATCAAGTTTGGGAACCAAGAAACATTCCCTTC
911 CACCACCCTTATCAAGATTAGGAACCAACAAACATTCCCTTC
24380 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
1 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
24445 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
66 GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
*
24510 GGATTAGGCACCACAAATTTAGTCTTCTCAATAAGATACACGATATTGATGCTTTGGTTTCACAA
131 GGATTAGGCACCATAAATTTAGTCTTCTCAATAAGATACACGATATTGATGCTTTGGTTTCACAA
24575 GAAAGGCTTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACG
196 GAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACG
* *
24640 AATTCTAACAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTATCCTCATTAGGA
260 AATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGA
24705 TAAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATA
325 TAAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATA
24770 AAAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTG
390 AAAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTG
24835 GGAACCAAGAAACATTCCCTTCATTAGGATACATGGAATTGATGCTTTGGTGTCACAAGAAAAGG
455 GGAACCAAGAAACATTCCCTTCATTAGGATACATGGAATTGATGCTTTGGTGTCACAAGAAAAGG
24900 TTTTCTTTCCACTGTTTTTTATGGAATCTAAATTTGTATTTTAAATAACACAAACATGAATTGTC
520 TTTTCTTTCCACTGTTTTTTATGGAATCTAAATTTGTATTTTAAATAACACAAACATGAATTGTC
* * * * *
24965 ATACTAATCCCCATTATTTTCAGCATTCGGCACGATAAACATAGTCTTCTCATTAGGATATATGA
585 ATACTAATCCCCATTATTTTCAGCATTAGGCACCATAAACATAGTCTTCTCAATAGGATACACGA
25030 TATTGATGCTTTGGTATCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA-AGTTCA
650 TATTGATGCTTTGGTATCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATA-TTCA
* * * * *
25094 TGCCTCAAATGAGACAAACATGGATTCT-GATAAGGATCTTCATTCATTTTGTGATTGGGCACTA
714 TGCCTCAAATGAGACAAACACGAATTCTAG-CAAGGATCTTCATTCATTTTGTGATTAGGCACAA
*
25158 T-AATCACATTCTCCTAATTATGATAAATGATATTGATGATTTTCT-TTT-GC-TTGGAAATCTT
778 TAAAT-ACATTCTCCTAATTAGGATAAATGATATTGATGATTTT-TGTTTGGCATT-GAAATCTT
* * * * * ** **
25219 TTCTTTGC-CTTAGTTCCCTTGAAATCAAACTTCATCCCTGAAATAAGGCAAGCATTGATTATTG
840 TTCTTTGCTC-TAGTTCCCTTAAAATAAAAATTCAACCCTGAAATAAGACAAGCATCAATTATCA
** * * *
25283 TAACAGTCACCATTCTTTTCAAGATTAGGAACCAACAACACTTTCCTTTC
904 TAACAGTCACCACCCTTATCAAGATTAGGAACCAACAA-ACATTCCCTTC
* * * * * * * ** *
25333 ATTATGATAGATGACATTGATGCTTTGGGGTCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGAT
1 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
* * * * * * * *
25398 AGAATC-AACATTTGTCTCTTAAATAAGACAAACGTGAATAGTCATACCAATCCTCATCCCTTTT
66 GGAATCTAA-ATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCAT-TCTTTT
** ** **
25462 -AGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATTGACACTTTGGTTTTG
129 CAGGATTAGGCACCATAAATTTAGTCTTCTCAATAA-GATACACGATATTGATGCTTTGGTTTCA
* * * * *
25525 CAAGAAGGGCTTTCTTCCCGCCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
193 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACA
* * * * * * * * ** *
25590 TGGATTCTAGTAAGGATATTCATGCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAG
258 CGAATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAG
* * * * *
25655 GATAAATGATAATGATGATTTTCT-TTT-GCATGAAAATATTTTCGTTGCCCTATTTTCCTTAAA
323 GATAAATGATATTGATGATTTT-TGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAA
* * * * * * * *
25718 ATCAAAATACATCCCTTAATTATGACAAGCATCGATTCTCGCAACAGTCTCCAC
387 ATAAAAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCAC
25772 TATCTGGATA
Statistics
Matches: 1272, Mismatches: 108, Indels: 25
0.91 0.08 0.02
Matches are distributed among these distances:
951 81 0.06
952 425 0.33
953 760 0.60
954 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (952 bp):
ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTTAT
GGAATCTAAATTTGTCTTTTAAATAACACAAACATGAATTGTCATACTAATCCCCATTCTTTTCA
GGATTAGGCACCATAAATTTAGTCTTCTCAATAAGATACACGATATTGATGCTTTGGTTTCACAA
GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACACGA
ATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAAATATATTCTCCTCATTAGGAT
AAATGATATTGATGATTTTTGTTTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATAA
AAATTCAACCCTTAAATATGACAAGTATCAATTCTCACAATAGTCTCCACCCTTATCAAGTTTGG
GAACCAAGAAACATTCCCTTCATTAGGATACATGGAATTGATGCTTTGGTGTCACAAGAAAAGGT
TTTCTTTCCACTGTTTTTTATGGAATCTAAATTTGTATTTTAAATAACACAAACATGAATTGTCA
TACTAATCCCCATTATTTTCAGCATTAGGCACCATAAACATAGTCTTCTCAATAGGATACACGAT
ATTGATGCTTTGGTATCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATATTCATG
CCTCAAATGAGACAAACACGAATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACAATAA
ATACATTCTCCTAATTAGGATAAATGATATTGATGATTTTTGTTTGGCATTGAAATCTTTTCTTT
GCTCTAGTTCCCTTAAAATAAAAATTCAACCCTGAAATAAGACAAGCATCAATTATCATAACAGT
CACCACCCTTATCAAGATTAGGAACCAACAAACATTCCCTTC
Found at i:27407 original size:475 final size:476
Alignment explanation
Indices: 26529--34039 Score: 8507
Period size: 475 Copynumber: 15.8 Consensus size: 476
26519 TAGGCATAAC
* * * *
26529 AAACATATTCTCCTAATTAGGATAAATGATATTGATGATTTTTGTTTTGCATGGAAATATTTTCT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCT
* * *
26594 TTGCCCTATTTTCCATAAAAT-AAAATTCATCCCTTAAATATGACAAGCATTGATTCGT-GCAAC
65 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATT-GTCGTAAC
* * * * * *
26657 AATCTCCACTCTTTTCAAGATTGGGAACCAAGGA-ACTTTCCCTTTATTAGGATACACGACATTG
129 AGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTG
* *
26721 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCT
194 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * * **
26786 TAAATAAGACAAACATGAATAGTCATACCAATCCCCATTCTTTTTAGGATTAGGCACCACGAACA
259 TAAATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
* *
26851 TAGTCTTCTTATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACC
324 TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * *
26916 AATTTTTGTAAAGTCTAGGTTCGTGCCTTAAATGAGACAAATAAGGATTCTAGTAATGACCTTCA
389 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* *
26981 TTCA-ATTGTGATTAGGCAGTAT
454 TTCATTTTGTGATTAGGCACTAT
* * * * * *
27003 AGACACATTCTCCTTACTAGGATACATGATATTGATGATTTGCTTTTGCATGAAAATCTTTTCTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * ** *
27068 TGCCCTATTTTCCTTAAAATCAAGGTTTATCCCTTAAATAAGGCAAGCATTGATTCCCGTAACAC
66 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACAG
* * * *
27133 TC-CCAATTCTTTTCAAGATTGGGAACCAAAAACACAATCCC-TCTATTGGGATACGTGACATTG
131 TCTCC-ATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC-ATTAGGATACATGACATTG
* * ** * * * *
27196 ATGCTTTAGAGTCATAAGAAAAGCTTTTCTTTCTACAATTTTTGATAGAATCGAAGTTTGTCACT
194 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * * *
27261 TATATACGACAACCATGAATACTCATACTAA-CCCCTATTCTTTTCAGGATTAGGAACCATAAAC
259 TAAATAAGACAACCATGAATACTCATACTAATCCCC-ATTCTTTTTAGGATTAGGCACCATAAAC
* * * *
27325 ATAGTCTTCTCATAAAGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCCTCACAC
323 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
** * * *
27390 CAATTTTTACAAAGTCTAAGTTCGTGCCTCAAACGTGACAAACATGGATTCTACTAATGATCTTC
388 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* *
27455 AATT-TTTTTGTGATTAGGCACAAT
453 -ATTCATTTTGTGATTAGGCACTAT
** * *
27479 AAACACATTCTCCTCATTAAAATCAATGATATTAATG-TTTT-TTTTGCATGGAAATCTTTTCTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * *
27542 TGCTCTATTTTCCTTAAAAT-AAAAGTTCATCCCTTAAATATGACAAGCATCGATTCTCGCAATA
66 TGCCCTATTTTCCTTAAAATCAAAA-TTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACA
* ** * *
27606 GTCACCACACTTTTCAAGATTGGGAACCAAGAA-ACATTCCCTTCTTTAGGATACATGGCATTGA
130 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
27670 TGCTTTGGTGTCACAAGAAATGGTTTTCTTTCCACCATTTTTTGATAGAATCAAGGTTTATCTCT
195 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTCTCT
* * * * ** * * * *** ** * **
27735 T--A-AA-ATAACCAAGAAATGCT-TTGGT-GT-CACAATAAATCAAGGTTTATTTCCACCATAA
259 TAAATAAGACAACCATG-AATACTCATACTAATCCCCATTCTTTTTAGGATTA--GGCACCATAA
* * *
27793 ACATAGTCTTCTCA-ATAGTATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCC
321 ACATAGTCTTCTCATA-AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* * *
27857 CACCAATTTTTGTACAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATC
385 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
27922 TTCATTCATTTTGTGATTAGGCACTAT
450 TTCATTCATTTTGTGATTAGGCACTAT
* ** * *
27949 AAACACATTCTCCTAATTTTGATAAATGATATTGATGATTTTCTTTTGCTTTGAAATCTTTTCTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * * * * *
28014 TGCCCTATTTTTCATAAAATCAAAATTTAT-CCTTGAAATAAGGCAAGCATTGATTCTTGTGACA
66 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT-AAATATGACAAGCATCGATTGTCGTAACA
* * * * * *
28078 GACTCCATT-TTTTCAAGAATGGGAACCAAAAATACATTCCTTTCATTAGGATACAAGACATTGA
130 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * * *
28142 TGGTTTGGTGTTGTAAGAAAAGGTTTTCTTTCCTCCATTTTT-TTAAGAATCAAAGTTTGTCACT
195 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT-AGAATCAAAGTTTGTCTCT
* * * * * ***
28206 TAAATAAGACAAACGTGAACAGC-CATACCAATCCCCATTCTTCTTAGGATTAGGTGGCATAAAC
259 TAAATAAGACAACCATGAATA-CTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
* * * * ** * *
28270 ATAGTATTCTCATAAGGACACACAATATTAACACTTTGGTTTTGTAAGAAAGGCTTTCTTCCCAC
323 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
*
28335 CAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTC
388 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
28400 ATTCATTTTGTGATTAGGCACTAT
453 ATTCATTTTGTGATTAGGCACTAT
* * * *
28424 AAACACATTCTCCTTATTAGGATAAATGTTAATGATGATTTTCTTTTGCATGGAAATCTTTTCAT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * * *
28489 TGCCCAATTTTCCTTAAAATCAAAAGTCATTCCTTAAATATGACAAGGAACGACTGTCGTAATAG
66 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACAG
* *
28554 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCATTAGGATGCATGACATTGAT
131 TCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * *
28619 G-TTTGCTCTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATAAAAGTTTGCCCCTTA
196 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * *
28683 AATAAGACAACCATCAAGACTCGTACTAATCCCCATTCTTTTTAGGGTTAGGCACCGTAAACATA
261 AATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATA
* * * ** * *
28748 GTCATCTCATAAGGATACATGATATTAACACTTTGGTTTTGCAAGAAAGGCTTTCTTCACACCAA
326 GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * * * * *
28813 TTTCTGCAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCCACTACTGATCTTCATT
391 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
*
28878 TATTTTGTGATTAGGCACTAT
456 CATTTTGTGATTAGGCACTAT
* * *
28899 AAACATATTCTCCTCATTATCTCCTCATTAAGATAAATGATAATGATGCTTTTCTTTTGCATGGA
1 AAAC--A-------CA-T-TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * *
28964 AATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGGATCAAT
55 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGAT
* * * * * *
29029 TGTCGTAACAGCCTCCATTCCTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAAGATGC
120 TGTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATAC
* * * *
29094 ATGACATTGATG-TTTGCTATCGCAAGAAAAACTTTTCTTTCCACAATTTTTGATAGAATCAAAG
185 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
* ** * **
29158 TTTGTCTCTTACATAAGACAATAATTAATACTCATACTAATCCTTATTCTTTTTAGGGA-TAGGC
250 TTTGTCTCTTAAATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTA-GGATTAGGC
* ** *
29222 ACCATAAACATAGTCATCTCATAAGGATACACGATATTGACACTTTGGTTTTGCAAGAAAGGCTT
314 ACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
** * * * * * *
29287 TCTTTACACCAATTTTTGCAAGGTCTAAGTTTGTGCCTCAAATGAAACAAACATGGAATCTTGTA
379 TCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * *
29352 AGGATTTTCACTCATTTTGCGATTAGGCATTAT
444 ATGATCTTCATTCATTTTGTGATTAGGCACTAT
* *
29385 AAACACATTCTCCTCATCAGGATAAATGATATTGATGTTTTTCTTTT-CGATGGAAATCTTTTCT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCT
* * * * * * *
29449 TTGCCTTATTTCCCATAAAATCAAAGTTTATCCCTTAAATATGACAAGAATTGATTGTCGTAACA
65 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACA
* * *
29514 GTCTCCATTCTTTTCACGATTGGGAACCAAGAATACATTCCCTTCATTAGGATGCATGACATTGA
130 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
29579 TGCTTTGGTGTCGCAAGAAACA-CTTTTATTTTCACCATTTTTGATAGAATCACA-TTTTTCCTC
195 TGCTTTGGTGTCGCAAGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTC
* * * * *
29642 TTAAATAAGACATCCAAGAAGACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAT
258 TTAAATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
* * * *
29707 TTAGTCTTCTCA-ATAGGATACACGATATTGATGCTTTGGTTCCACAAGAAAGGCTTTTTTCCCA
323 ATAGTCTTCTCATA-AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
* * * * *
29771 CCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAACGAGACAAACATGAATTCTAGCAAGGATCTT
387 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* *
29836 CATTCATTTTGTGATTAAGCACTAC
452 CATTCATTTTGTGATTAGGCACTAT
* * * ** * * *
29861 AAA-AAATTCTCCTCGTT-GTGATAAATGATATTTATGATTTTCTTTTGCGCGAAAATATTATCT
1 AAACACATTCTCCTCATTAG-GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * *
29924 TTGCCCTATTTTCCTTAAAATCAAAAGTCATCCCTTAAATATGATAAGAATAGATTGTCATAACA
65 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACA
* * * * * *
29989 ATCTCCATTCTTTTCAAGATTAGGAACTAAGAACACATTCCCTTCGTTAGGGTACATGGCATTGA
130 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * ** *
30054 TGCTTTGGTGTCACAAGAAATGGTTTTCTTTCCACTGTTTTTTGATAGAATCAAAGTTTATCTCT
195 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAGAATCAAAGTTTGTCTCT
* * * ** * *
30119 CAAATAATACAAACATGAATTGTCATACTAATCCCCATTATTTTTAGCATTAGGCACCAT-AA-A
259 TAAATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
* * * * * *
30182 TAGTCTTTTCATTAGGATACACGACATTGATACTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACC
324 TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACC
* *
30247 AATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAAATGGATTCTAGTAATGATCTTCA
389 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
*
30312 TTCATTTTCTGATTAGGCACTAT
454 TTCATTTTGTGATTAGGCACTAT
* * *
30335 AAACACATTCTCCTCATTATGATAAATGATATTGACGATTTTCTTTTGCATGGAAATATTTTCTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * **
30400 TACCCTATTTTCCACAAAATTAAAATTCATCCCTTAAATATGACAAGAATC-ATTTGTCACAACA
66 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGA-TTGTCGTAACA
* * *
30464 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATTCCCTTCTTTAGGATGCATGACATTGA
130 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * *
30529 TGCTTTGGTGTCGCAAGAAAAACTTTTATTTCCACCATTTTTGATAGAATCAAAGTTT-TCCTCA
195 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTCT
* * *
30593 TAAAAAAGACAACCATGAAGACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
259 TAAATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
* * *
30658 TAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCTACC
324 TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * * *
30723 AATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATTGATTCGAGAAATGATCTCCA
389 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
*
30788 TTCATTTTGTGATTAGGCACAAT
454 TTCATTTTGTGATTAGGCACTAT
* * *
30811 AAACGCATTCTCCTCATTAGGATAAA--AGA-TGATGATTTT-TTTTGCATGGAAATCTTTTTTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
** * * * * * * * *
30872 TGCTTTATTTTCCTTAAAATAAAAATTCAACCCTCAAATATGACAAGCTTCGATTCTTGCAATAG
66 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACAG
* * *
30937 TCTCCACTCTTTTCAAGATTGGGAACCAAGAA-ACATTCCTTTCATTAGGATACATGGCATTGAT
131 TCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
31001 GCTTTGGTGTCACAAGAAATGGTTTTCTTTCCACCGTTTTTTGATTGAATCAAAGTTTGTCTCTT
196 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * * *
31066 AAATAACACAAACATGAAT-CATCATACTAATACCTATT-ATTTTCGGCATTAGGCACCATAAAC
260 AAATAAGACAACCATGAATAC-TCATACTAATCCCCATTCTTTTTAGG-ATTAGGCACCATAAAC
* * * * * *
31129 ATATTCTTCTCATCAGGATACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTTTCCCAC
323 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * *
31194 CAATTTTTGTAAAGTCTAAGCTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTC
388 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
*
31259 ATTTATTTTGTGATTAGGCACTAT
453 ATTCATTTTGTGATTAGGCACTAT
* * * * * **
31283 AAACGCATTCTTCTAATTATGATAAATGATACTGATGATTTTCTTTTGGTTGGAAATCTTTTCTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * * * * *
31348 TGCCCTATTTTCCATAAAATCAAAATTCATCTATGAAATAAGGCAAGCA-CTGATTCTTGTAATA
66 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATC-GATTGTCGTAACA
* * * * *
31412 GTCTCTATTCATTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGA
130 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* ** * ** * *
31477 TGCTTTGGGGTCATAAGAAAAGCTTCTCTTTCCACTGTTTTTTAATAGAATCAAAGTTTGCCTCT
195 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAGAATCAAAGTTTGTCTCT
* * * * * * *
31542 TAAAGAAGACAATCATGAAGACTCATACTAGTTCCTACTCTTTTTAGGATTAGGCACCATAAACA
259 TAAATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
* * *** * *
31607 TAGTCATCTCATAAGGATGCACGATATTGACAATTTGGTTTTC-CAAGAAAGGCCTTCCTCCCAC
324 TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTCGCAAGAAAGGCTTTCTTCCCAC
* * *
31671 CAATTTTGGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTC
388 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
** *
31736 ATTCATTTTGTGATTAGGCTTTCT
453 ATTCATTTTGTGATTAGGCACTAT
* * * * *
31760 AATCACATTCTCCTCATTAGGATAAATGATAATGATAATTTTCTTTTGCGTGAAAATCTTTT-TT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * *
31824 TGCCCTATTTTCTTTAAAATCAAAATTCATCCCTTAAATATGATAAGGATCGATTGTCATAACAG
66 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACAG
* * * * * *
31889 TCTCCATTCTTTTCAAGATTGGGAACCAGGAGCACTTTCCCTTCATTAGGATGCATGGCATTGAA
131 TCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
31954 G-TTTGCTATCGTAAGAAAAGCTTTCCTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTA
196 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * ** **
32018 TATAAGATAACCATGAATAATCATACTAATCCTTATTCTTTTTTTGATTAGGCACCAT-AACATA
261 AATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATA
*** * * * * * *
32082 GTCTTCAGTTTAGGATACATGATATGGATGATTTCGTTTCGAAAGAAAGGCTTT-TTCCCACCAA
326 GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * * * *
32146 TTTTTGTGAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGAATCTAGTAAAGATTTTCATT
391 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
32211 CATTTTGTGATTAGGCACTAT
456 CATTTTGTGATTAGGCACTAT
* * *
32232 AAACACATTCTCCTCATTAGGATAAACGATATTGATG-TTTTTTTTGTGCATGAAAATCTTTTCT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT-TGCATGGAAATCTTTTCT
* ** * * * * *
32296 TTACCCT-TTTTCCCAAAAAAAATCAAAGTTTATCCCTTAAATATCACAAGAATCGATTGTCATA
65 TTGCCCTATTTT-CC--TTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTA
* * * * *
32360 ATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAGAATACATTCCCTTCATTAGGATGCGTGACAT
127 ACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACAT
* * * * *
32425 TGAAGCTTTGGTGTCGCAAGAAAAACTTTTATTTCCACCAGTTTTGATAGAATCAAAGTGTT-CC
192 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT-TTGTC
* * * * *
32489 TCTTAAATAAGACAACCATAAAGACTCATACTAATCCCCATTCTTCTCAGGATTAGGCACCATCA
256 TCTTAAATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAA
* * *
32554 ACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCC
321 ACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC
* * * * * *
32619 ACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAAGGAGACAAACATGAATTCTAGCAAGGATCT
386 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
*
32684 TCATTCTTTTTGTGATTAGGCACTAT
451 TCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
32710 AAACACATTTTCCTCATTATGATAAATGTTATTTATG-TTTTCTTTTGCGTGGAAATATTATCTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * * *
32774 TGCCCTATTTT-TTCTAAAATCAAAATTCATCACTTAAATATGATAAGAATCAATTGTCATAAAA
66 TGCCCTATTTTCCT-TAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACA
* * *
32838 ATCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCATTAGGATACATGGCATTGA
130 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * ** *
32903 TGCTTTGGTGTCACAAGAAATGGTTTTCCTTCCACTGTTTTTTGATAGAATTAAAGTTTGTCTCT
195 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAGAATCAAAGTTTGTCTCT
* ** ** * * * * *
32968 CAAATAACTCAAAAAAGACT-CATCGTACTAATCCCCATTATTTTTAGCATTAGGCACCATAAAC
259 TAAATAAGACAACCATGAATAC-TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
* * *
33032 ATAGTCTTCTCTTTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCCTTT-TTCCCA
323 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTCTTCCCA
* * * * *
33096 CCAATTTTTGTAAAGTCTAAGTTCTTGCGTTAAATGAGACAAACTTGGATTCTAGTAATGATCGT
387 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * *
33161 CCTTCATTTTGAGATTAGGCATTAT
452 CATTCATTTTGTGATTAGGCACTAT
* * * *
33186 AAACACATTCTCCTCATTATGATAAATGATATTGACGACTTTCTTTTGCATGGAAATGTTTTAC-
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT-CT
* * * * * **
33250 TTACCCTAGTTTCCTTAAAATTAAAATTCATCCCTTAAATATGACAAGAATCGTTTGTAATAACA
65 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACA
** * *
33315 GTCTCCATTCTTTTCAAGATTGGGAACCTGGAATACATTCCCGTCATTAGGATGA-ATGACATTG
130 GTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGAT-ACATGACATTG
* * * *
33379 ATGCTTTGGAGTCGCAAGAAAAACTTTTATTTCCACCATTTTCGATAGAATCAAAGTTT-TCCTC
194 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTC
* * * * *
33443 ATAAATAGGACAACCATGAAGACTTATACTAATCCCCATTCTTTTTAAGATTAGGCACCATAAAC
258 TTAAATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
*
33508 ATAGTCTTCTCATAAGGACACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
323 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * * * *
33573 TAATTTTTGCAAAGTCTAAGTTTGTGTCTCAAATGAGACAAACATGGATTCCAGAAATGATCTTT
388 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* *
33638 ATTCATTTTGTGATCAGGCACAAT
453 ATTCATTTTGTGATTAGGCACTAT
33662 AAACACATTCTCCTCATTAGGATAAGA-GATATTGATGATTTT-TTTTGCCA-GGAAATCTTTTC
1 AAACACATTCTCCTCATTAGGATAA-ATGATATTGATGATTTTCTTTTG-CATGGAAATCTTTTC
* * * * * * * * * *
33724 TTTGCTCTATTTTTCGTAAAATAAAAATTCAACCCTTAAATGTGACAAGCATCGATTCTTGCAAT
64 TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAAC
* * * * *
33789 AGACTCCA-CCTTTTTCAAGATTGGGAACGAAGAA-ACATTCCATTCATTAGGATACATGGCATT
129 AGTCTCCATTC-TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
* * * ** *
33852 GATGCTTTGGTGTCACAAGAAATGGTTTTCTTTCCACTGTTTTCTGATAGAATTAAAGTTTGTCT
193 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT-TGATAGAATCAAAGTTTGTCT
* * * * * * *
33917 CTCAAATAACACATA-CAAGAAT-CGTCATACTAATCCCCAATATTTTTAGCATTTGGCACCATA
257 CTTAAATAAGACA-ACCATGAATAC-TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATA
* * * * * *
33980 AACATAGTATTCTTATTAA-GATACACGGTATTGACGCTTTGGTTTTGCAGGAAAGGCTTT
320 AACATAGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
34040 TTTTAGTTCA
Statistics
Matches: 5925, Mismatches: 996, Indels: 231
0.83 0.14 0.03
Matches are distributed among these distances:
468 9 0.00
469 6 0.00
470 181 0.03
471 128 0.02
472 598 0.10
473 167 0.03
474 582 0.10
475 1788 0.30
476 1339 0.23
477 565 0.10
478 143 0.02
484 3 0.00
485 1 0.00
486 413 0.07
487 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTGTCGTAACAG
TCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
AATAAGACAACCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATA
GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
CATTTTGTGATTAGGCACTAT
Found at i:30352 original size:158 final size:158
Alignment explanation
Indices: 29217--33698 Score: 940
Period size: 158 Copynumber: 28.3 Consensus size: 158
29207 TTTTTAGGGA
* * * * ** *
29217 TAGGCACCATAAACATAGTCAT-CTCATAAGGATACACGATATTGACACTTTGGTTTTGCAAGAA
1 TAGGCACCATAAACACATTC-TCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAA
* * * * ** * *
29281 AGGCTTTCTTT-ACACCAATTTTTGCAAGGTCTAAGTTTGTGCCTCAAATGAAACAAACATGGAA
65 AGGCTTT-TTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGAT
* * * * *
29345 TCTTGTAAGGATTTTCACTCATTTTGC-GAT
129 TCTAGTAATGATCTCCATTCATTTT-CTGAT
** * * * ** *
29375 TAGGCATTATAAACACATTCTCCTCATCAGGATAAATGATATTGATGTTTTTCTTTTCG-ATGGA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTTCGCA-AGA
* ** ** *** * * * *
29439 AA-TCTTTTCTTTGC-CTTATTTCCCATAAAATCAAAGTTTATCCCTTAAAT-ATGACAAGA-AT
64 AAGGCTTTT-TTCCCACCAATTT-TTGTAAAGTCAAAGTTCATGCCTCAAATGA-GACAA-ACAT
* * * * *
29500 TGATTGTCGTAA-CAGTCTCCATTC-TTTTCACGAT
125 GGATTCTAGTAATGA-TCTCCATTCATTTTC-TGAT
* * * * * *
29534 TGGGAACCA-AGAATACATTC-CCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGA
1 TAGGCACCATA-AACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
** ** * * * * **
29597 AACACTTTTATTTTCACC-ATTTTTGATAGAA-TCACA-TT-TTTCCTCTTAAATAAGACATCCA
64 AAGGCTTTT-TTCCCACCAATTTTTG-TA-AAGTCAAAGTTCATGCCTC--AAATGAGACAAACA
* * * * * *
29658 AGAAGACTC-A-TACTAATCCCCATTC-TTTTCAGGAT
124 TG--GATTCTAGTAATGATCTCCATTCATTTTC-TGAT
*** * * * * * *
29693 TAGGCACCATAAATTTAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTCCACAAGAAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
* * *
29758 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAACGAGACAAACATGAATTC
66 GGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTC
* * * *
29823 TAGCAAGGATCTTCATTCATTTTGTGAT
131 TAGTAATGATCTCCATTCATTTTCTGAT
* * * * * * * * ** * **
29851 TAAGCACTACAAA-AAATTCTCCTCGTT-GTGATAAATGATATTTATGATTTTCTTTTGCGCGAA
1 TAGGCACCATAAACACATTCTCCTCATTAG-GATACATGATATTGATGCTTTGGTTTCGCAAGAA
*** * * * * * *
29914 AATATTATCTTT-GC-CCTATTTTCCT-TAAAATCAAAAG-TCATCCCTTAAAT-ATGATAAGA-
65 AGGCTT-T-TTTCCCACCAATTTT--TGTAAAGTC-AAAGTTCATGCCTCAAATGA-GACAA-AC
* * ** *
29973 ATAGATTGTCA-TAACAATCTCCATTC-TTTTCAAGAT
123 ATGGATTCT-AGTAATGATCTCCATTCATTTTC-TGAT
* * * * ** * *
30009 TAGGAACTA-AGAACACATTC-CCTTCGTTAGGGTACATGGCATTGATGCTTTGGTGTCACAAGA
1 TAGGCACCATA-AACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
* *** * * *
30072 AATGG-TTTTCTTTCCACTGTTTTTTGATAGAA-TCAAAGTTTAT-CTCTCAAATAATACAAACA
64 AA-GGCTTTT-TTCCCACCAATTTTTG-TA-AAGTCAAAGTTCATGC-CTCAAATGAGACAAACA
* * * * *
30134 TGAATTGTCA-TACTAATCCCCATT-ATTTT-TAGCAT
124 TGGATTCT-AGTAATGATCTCCATTCATTTTCT-G-AT
* * ** * * * *
30169 TAGGCACCAT-AA-ATAGTCTTTTCATTAGGATACACGACATTGATACTTTGGTTTTGCAAGAAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
* *
30232 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAAATGGATTC
66 GGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTC
*
30297 TAGTAATGATCTTCATTCATTTTCTGAT
131 TAGTAATGATCTCCATTCATTTTCTGAT
* * * * * ** * *
30325 TAGGCACTATAAACACATTCTCCTCATTATGATAAATGATATTGACGATTTTCTTTTGCATGGAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAA
** ** * *** * * * * *
30390 A-TATTTTCTTTAC-CCTATTTTCCACAAAATTAAAATTCATCCCTTAAAT-ATGACAAGA-AT-
65 AGGCTTTT-TTCCCACCAATTTT-TGTAAAGTCAAAGTTCATGCCTCAAATGA-GACAA-ACATG
* ** *
30450 CATT-T-GTCACAACAGTCTCCATTC-TTTTCAAGAT
126 GATTCTAGT-A-ATGA-TCTCCATTCATTTTC-TGAT
* * * * * * *
30484 TGGGAACCA-AGAATACATTC-CCTTCTTTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGA
1 TAGGCACCATA-AACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
** * * ** *
30547 AAAACTTTTATTTCCACC-ATTTTTGATAGAA-TCAAAGTT--TTCCTCATAAAAAAGACAACCA
64 AAGGCTTTT-TTCCCACCAATTTTTG-TA-AAGTCAAAGTTCATGCCTC--AAATGAGACAAACA
* * * * *
30608 TGAAGACTC-A-TACTAATCCCCATTC-TTTTCAGGAT
124 TG--GATTCTAGTAATGATCTCCATTCATTTTC-TGAT
* * * * *
30643 TAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
* * * * *
30708 GGCTTTCTTCCTACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATTGATTC
66 GGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTC
* * *
30773 GAGAAATGATCTCCATTCATTTTGTGAT
131 TAGTAATGATCTCCATTCATTTTCTGAT
* * * * * *
30801 TAGGCACAATAAACGCATTCTCCTCATTAGGATAAAAGATGA-TGAT--TTT--TTTTGCATGGA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGAT-ATTGATGCTTTGGTTTCGCA-AGA
* ** *** * * * ** * *
30861 AA-TCTTTTTTTTGC-TTTATTTTCCT-TAAAATAAAAATTCAACCCTCAAAT-ATGACAAGCTT
64 AAGGC-TTTTTTCCCACCAATTTT--TGTAAAGTCAAAGTTCATGCCTCAAATGA-GACAAACAT
* * * * *
30922 CGATTCTTGCAAT-AGTCTCCACTC-TTTTCAAGAT
125 GGATTCTAGTAATGA-TCTCCATTCATTTTC-TGAT
* * * ** * *
30956 TGGGAACCA-AGAA-ACATTC-CTTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGA
1 TAGGCACCATA-AACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
* ** * * * *
31018 AATGG-TTTTCTTTCCACCGTTTTTTGATTGAA-TCAAAGTT--TGTCTCTTAAATAACACAAAC
64 AA-GGCTTTT-TTCCCACCAATTTTTG--TAAAGTCAAAGTTCATG-C-CTCAAATGAGACAAAC
* * * *
31079 ATGAATCATCATACTAAT-A-C-CTATT-ATTTTCGGCAT
123 ATGGAT--TC-TAGTAATGATCTCCATTCATTTTCTG-AT
* * * * *
31115 TAGGCACCATAAACATATTCTTCTCATCAGGATACATGATATTGATGTTTTGGTTTTGCAAGAAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
* *
31180 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCATGCCTCAAATGAGACAAACATGGATTC
66 GGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTC
* * * *
31245 TAGTAAGGATCTTCATTTATTTTGTGAT
131 TAGTAATGATCTCCATTCATTTTCTGAT
* * * * * * * * ** * ***
31273 TAGGCACTATAAACGCATTCTTCTAATTATGATAAATGATACTGATGATTTTCTTTTGGTTGGAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTTCGCAAGAA
* ** * ** * * * * * * *
31338 A-TCTTTTCTTTGC-CCTATTTTCCATAAAATCAAAATTCAT-CTATGAAATAAGGCAAGCACT-
65 AGGCTTTT-TTCCCACCAATTTT-TGTAAAGTCAAAGTTCATGC-CTCAAATGAGACAAACA-TG
* * *
31399 GATTCTTGTAAT-AGTCTCTATTCA-TTTCAAGAT
126 GATTCTAGTAATGA-TCTCCATTCATTTTC-TGAT
* * * * * * ** **
31432 TGGGAACCAAAAACACATTC-CTTTCATTAAGATACATGACATTGATGCTTTGGGGTCATAAGAA
1 TAGGCACCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAA
* ** *
31496 AAGCTTCTCTTT-CCA-CTGTTTTT-TAATAGAATCAAAGTT--TGCCTCTTAAA-GAAGACAAT
65 AGGCTT-T-TTTCCCACCAATTTTTGTAA-AG--TCAAAGTTCATGCCTC--AAATG-AGACAAA
* * * * **
31555 CATGAAGACTC-A-TACT-AGT-TCCTACTCTTTTTAGGAT
122 CATG--GATTCTAGTAATGA-TCTCC-ATTCATTTTCTGAT
* * * * * ***
31592 TAGGCACCATAAACATAGTCAT-CTCATAAGGATGCACGATATTGACAATTTGGTTTTC-CAAGA
1 TAGGCACCATAAACACATTC-TCCTCATTAGGATACATGATATTGATGCTTTGG-TTTCGCAAGA
* ** * * * * *
31655 AAGGCCTTCCTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
64 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGAT
* *
31720 TCTAGTAATGATCTTCATTCATTTTGTGAT
129 TCTAGTAATGATCTCCATTCATTTTCTGAT
** * * * ** ** * **
31750 TAGGCTTTC-TAATCACATTCTCCTCATTAGGATAAATGATAATGATAATTTTCTTTTGCGTGAA
1 TAGGC-ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAA
** ** * * * * * * * ** *
31814 AATCTTTTTTTGC-CCTATTTTCTTTAAAATCAAAATTCATCCCTTAAAT-ATGATAAGGATCGA
65 AGGCTTTTTTCCCACCAATTTT-TGTAAAGTCAAAGTTCATGCCTCAAATGA-GACAAACATGGA
* * *
31877 TTGTCA-TAA-CAGTCTCCATTC-TTTTCAAGAT
128 TTCT-AGTAATGA-TCTCCATTCATTTTC-TGAT
* * ** * * * ** * * * *
31908 TGGGAACCAGGAGCACTTTC-CCTTCATTAGGATGCATGGCATTGAAG-TTTGCTATCGTAAGAA
1 TAGGCACCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAA
* * * * * * *
31971 AAGCTTTCCTTT-CCACC-ATTTTTGATAAAATCAAAGTT--TGTCTCTTATATAAGATAACCAT
65 AGGCTTT--TTTCCCACCAATTTTTG-TAAAGTCAAAGTTCATG-C-CTCAAATGAGACAAACAT
* * * * * *
32032 GAATAATC-A-TACTAATC-CTTATTCTTTTTTTGAT
125 GGAT--TCTAGTAATGATCTC-CATTCATTTTCTGAT
* * * * * *
32066 TAGGCACCAT-AACATAGTCT--TCAGTTTAGGATACATGATATGGATGATTTCGTTTCGAAAGA
1 TAGGCACCATAAACACATTCTCCTCA--TTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
* * *
32128 AAGGC-TTTTTCCCACCAATTTTTGTGAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGAA
64 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGAT
* * * *
32192 TCTAGTAAAGATTTTCATTCATTTTGTGAT
129 TCTAGTAATGATCTCCATTCATTTTCTGAT
* * * ** * *
32222 TAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTGATG-TTTTTTTTGTGCATGAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTT-CGCAAGAA
** * * ** * * * * *
32286 AATCTTTTCTT--TACC-CTTTTTCCCAAAAAAAATCAAAGTTTATCCCTTAAAT-ATCACAAGA
65 AGGCTTTT-TTCCCACCAATTTTT-----GTAAAGTCAAAGTTCATGCCTCAAATGA-GACAA-A
* * *
32347 -ATCGATTGTCA-TAAT-AGTCTCCATTC-TTTTCAAGAT
122 CATGGATTCT-AGTAATGA-TCTCCATTCATTTTC-TGAT
* * * * * * * * *
32383 TGGGAAGCA-AGAATACATTC-CCTTCATTAGGATGCGTGACATTGAAGCTTTGGTGTCGCAAGA
1 TAGGCACCATA-AACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
** * * * *
32446 AAAACTTTTATTTCCACC-AGTTTTGATAGAA-TCAAAGTGT--T-CCTCTTAAATAAGACAACC
64 AAGGCTTTT-TTCCCACCAATTTTTG-TA-AAGTCAAAGT-TCATGCCTC--AAATGAGACAAAC
* * * * * * *
32506 ATAAAGACTC-A-TACTAATCCCCATTC-TTCTCAGGAT
123 AT--GGATTCTAGTAATGATCTCCATTCATTTTC-TGAT
* * * * *
32542 TAGGCACCATCAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
* ** * *
32607 AGCTTTTTTCCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAAGGAGACAAACATGAATTC
66 GGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTC
* * * * *
32672 TAGCAAGGATCTTCATTCTTTTTGTGAT
131 TAGTAATGATCTCCATTCATTTTCTGAT
* * * * * * ** * **
32700 TAGGCACTATAAACACATTTTCCTCATTATGATAAATGTTATTTATG-TTTTCTTTTGCGTGGAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGC-AAGAA
** * * * * * * * *
32764 A-TATTATCTTTGCC-CTATTTTTTCTAAAATCAAAATTCAT-CACTTAAAT-ATGATAAGA-AT
65 AGGCTT-T-TTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGC-CTCAAATGA-GACAA-ACAT
** * ** *
32824 CAATTGTCA-TAAAAATCTCCATTC-TTTTCAAGAT
125 GGATTCT-AGTAATGATCTCCATTCATTTTC-TGAT
* * * ** * *
32858 TGGGAACTA-AGAACACATTC-CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGA
1 TAGGCACCATA-AACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
*** * * **
32921 AATGG-TTTTCCTT-CCACTGTTTTTTGATAGAA-TTAAAGTT--TGTCTCTCAAATAACTCAAA
64 AA-GGCTTTT--TTCCCACCAATTTTTG-TA-AAGTCAAAGTTCATG-C-CTCAAATGAGACAAA
** * * * * *
32981 -AAAGACTCATCGTACTAATCCCCATT-ATTTT-TAGCAT
122 CATGGATTC-TAGTAATGATCTCCATTCATTTTCT-G-AT
* * * * * *
33018 TAGGCACCATAAACATAGTCTTCTCTTTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
* * * * * *
33083 GGCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCGTTAAATGAGACAAACTTGGATTC
66 GGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTC
**
33148 TAGTAATGATCGTCC-TTCATTTTGAGAT
131 TAGTAATGATC-TCCATTCATTTTCTGAT
** * * * * * *
33176 TAGGCATTATAAACACATTCTCCTCATTATGATAAATGATATTGACGACTTT-CTTTTGCATGGA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTTCGCA-AGA
* * * * * * * * * *
33240 AATG-TTTTACTTACC-CTAGTTTCCT-TAAAATTAAAATTCATCCCTTAAAT-ATGACAAGA-A
64 AAGGCTTTT--TTCCCACCAATTT-TTGTAAAGTCAAAGTTCATGCCTCAAATGA-GACAA-ACA
* * * * * *
33300 TCGTTTGTAATAA-CAGTCTCCATTC-TTTTCAAGAT
124 TGGATTCTAGTAATGA-TCTCCATTCATTTTC-TGAT
* * * * * **
33335 TGGGAACC-TGGAATACATTC-CCGTCATTAGGATGA-ATGACATTGATGCTTTGGAGTCGCAAG
1 TAGGCACCAT-AAACACATTCTCC-TCATTAGGAT-ACATGATATTGATGCTTTGGTTTCGCAAG
** * * * *
33397 AAAAACTTTTATTTCCACC-ATTTTCGATAGAA-TCAAAGTT--TTCCTCATAAAT-AGGACAAC
63 AAAGGCTTTT-TTCCCACCAATTTTTG-TA-AAGTCAAAGTTCATGCCTC--AAATGA-GACAAA
* * * * * **
33457 CATGAAGACT-TA-TACTAATCCCCATTCTTTTTAAGAT
122 CATG--GATTCTAGTAATGATCTCCATTCATTTTCTGAT
* * * * * *
33494 TAGGCACCATAAACATAGTCTTCTCATAAGGACACACGATATTGATGCTTTGGTTTCGCAAGAAA
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
* * * * ** *
33559 GGCTTTCTTCCCACTAATTTTTGCAAAGTCTAAGTTTGTGTCTCAAATGAGACAAACATGGATTC
66 GGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTC
* * ** *
33624 CAGAAATGATCTTTATTCATTTTGTGAT
131 TAGTAATGATCTCCATTCATTTTCTGAT
* * *
33652 CAGGCACAATAAACACATTCTCCTCATTAGGATA-AGAGATATTGATG
1 TAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATG
33699 ATTTTTTTTG
Statistics
Matches: 3044, Mismatches: 949, Indels: 662
0.65 0.20 0.14
Matches are distributed among these distances:
153 2 0.00
154 43 0.01
155 77 0.03
156 149 0.05
157 250 0.08
158 1038 0.34
159 989 0.32
160 356 0.12
161 114 0.04
162 19 0.01
163 7 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
TAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
GGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTC
TAGTAATGATCTCCATTCATTTTCTGAT
Found at i:35915 original size:475 final size:476
Alignment explanation
Indices: 35023--41486 Score: 6776
Period size: 475 Copynumber: 13.7 Consensus size: 476
35013 AATGATCGAT
* *
35023 TACATTCCCTTCATTAGGATGCATGACATTGAAGCTTTGGTGTCGCAAGAAAAACCTTTATTTCC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
* * *
35088 ACCAATTTTGATAGAATCAAAG-TTTTCCTCTTAAATAAAACAACCATGAAGACTTATACTAATC
66 ACCATTTTTGATAGAATCAAAGTTTTTCC-CTTAAATAAGACAACCATGAAGACTCATACTAATC
* *
35152 CCCATTCTTCTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
130 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
*
35217 TTTGGTTTCGCAACG-AAGGCCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAA
195 TTTGGTTTCGCAA-GAAAGG-CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * *
35280 ATGAGATAAACATGTATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
258 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * * * * * *
35345 TCTCCTCATTATGATAAATGTTATTTATG-TTTTCTCTTGCGTGGTAATATTATCTTTGCCCAAT
323 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * ** *
35409 TTTCCTTAAAATCAAAATCCATCCCTTAAATATCACAAGAATCGTTTGTCAAAACAATCTCCATT
388 TTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATT
*
35474 CTTTTCAAGATTGGGAACCAGGAA
453 CTTTTCAAGATTGGGAACCAAGAA
35498 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
**
35563 ACCATTTTTGATAGAATCAAAGTTTTTCCCAAAAATAAGACAACCATGAAGACTCATACTAATCC
66 ACCATTTTTGATAGAATCAAAGTTTTTCCCTTAAATAAGACAACCATGAAGACTCATACTAATCC
* * * * *
35628 CTATTCTTATCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAAGATATTAATGCT
131 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCT
** * *
35693 TTGGTTTCAG-AAGAAAGGCTTTCTTCCCACCAATTTTTACAAAGTCTAAGTTCGTGCCTCGAAT
196 TTGGTTTC-GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * *
35757 AAGACAAACATGGATTCCAGAAATGATCTTCATTCATTTTGTGATCAGCCA-TAATAAACACATT
260 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATT
* * * * * ** * *
35821 CTCGTTATTAGGATAAATGGTAATGATGATTTTATTTTGCGCGAAAATCTTTT-TTTGCCCTTTT
324 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * * * *
35885 TTCTTTAAAATCAAAATTCATCCATTAAATATGACATGGATTGATTGTCGTAATAGTCTCCATTC
389 TTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATTC
35950 TTTTCAAGATTGGGAACCAAGAA
454 TTTTCAAGATTGGGAACCAAGAA
* * * * * * * *
35973 CACTTTCCCTTCATTAGGATGCATGGCATTGAAG-TTTGTTGTTGCAAGAAAAGCTTTTCTTTCC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
* * * * * ** * *
36037 CCCGTTTTTGATAAAATCAAAGTTTGTCTCTTGTATAAGACAACCATGAATAATCATACTAATCC
66 ACCATTTTTGATAGAATCAAAGTTTTTCCCTTAAATAAGACAACCATGAAGACTCATACTAATCC
* * * *** * * * *
36102 TCATTCCTTTCTGGATTAGGCACCATAATTGTAGTCTTCTCTTTAGGATGCATGATATGGATGAT
131 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCT
** * *
36167 TTGGTTTCAAAAGAAAGGC-TGCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATCCCTCAAATG
196 TTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * * *
36231 AGACAAACATGGAATCTAGTAAAGATTTTTATTCATTTTGTGATTAAGCA-TGATAAACACATTC
261 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTC
* * * * *
36295 TCCTCATTAGGATAAACGATGTTGATGTTTTTCTTTAGCATGGAAATCTTTTCTTTGCCATATTT
325 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
36360 CCCATAAAATCAAAGTTCATCCCTTAAATATGACAAGAATCGACTGTCGTAACAGTCTCCATTCT
390 TCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATTCT
36425 TTTCAAGATTGGGAACCAAGAA
455 TTTCAAGATTGGGAACCAAGAA
*
36447 TACATTCCCTTCATTAGGATGCATGACATTGAAGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
* * * *
36512 ACTATTTTTGATAGAATCAAAG-TTTTCCTCATAAATAAGACAACCATGAAGACTCAAAGTAATC
66 ACCATTTTTGATAGAATCAAAGTTTTTCC-CTTAAATAAGACAACCATGAAGACTCATACTAATC
* * * * *
36576 CCCATTCTTTTCAAGATTAGGCACCATAAGCATAGTCTTCTCATAAGGATACACGATATTAATGC
130 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
* * * *
36641 TTTGGTTTCGGAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAATTCGTGCCTCAAAT
195 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * * *
36706 GAGACAAACATGAATTCCAGAAATGATCTTCATTCATTTTGTGATCAGGCACAATAAACATATTC
260 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * *
36771 TCCTCAATAGGATAAATGATAATGATGATTTTCTTTTGCGTGAAAATCTTTT-TTCGCCCTTTTT
325 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
36835 TTCTCTAAAAT-AAAATTTCATCCCTTAAATATGGCAAGGATCGATTGTCGTAACAGCCTCCATT
390 TCCT-TAAAATCAAAA-TTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATT
*
36899 CTTTTCAAGATTGGGAGCCAAGAA
453 CTTTTCAAGATTGGGAACCAAGAA
* * * * * * * * *
36923 CACTTTTCCCTTCATTAGGATGCATGGCGTTGAAG-TTTGCTATCTCAAGAAAAGCTTTTATTTC
1 TAC-ATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTC
* * * * * * *
36987 CACCGTTTTTGATAAAATCAAAGTTTGTCTC-T---T-----AACCATGAATAATCGTACTAATC
65 CACCATTTTTGATAGAATCAAAGTTTTTCCCTTAAATAAGACAACCATGAAGACTCATACTAATC
* * *** * * * * *
37043 CTCAATCTTTTTTTGATTAGGCAGCATAAACAGAGTCTTCTCTTTAGGATACATGATATGGATGA
130 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
* * * * *
37108 TTTGGTTTTGAAACAAAGGCTTT-TTCCCACCAATTTTTATGAAGTCTAAGTTCATGCCTCAAAT
195 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * *
37172 GAGACAAACATGGAATCTAGTAAAGATTTTCATCCATTTTGGGATTAGGCACTATAAACACATTC
260 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
** *
37237 TCCTCATTAGGATAAACAATATTGATG-TTTCTCTTTTGCATGAAAATCTTTTCTTTGCCCTA-T
325 TCCTCATTAGGATAAATGATATTGATGATTT-TCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * *
37300 TTCTCATAAAATCAAAGTTCATCCCTTAAATATGACAAGAATCGATTGTCATAATAGTCTCCATT
389 TTC-CTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATT
37365 CTTTTCAAGATTGGGAACCAAGAA
453 CTTTTCAAGATTGGGAACCAAGAA
* *
37389 TACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGCAAG-AAAACTTTTATTTCC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
* *
37453 ACCATTTTTGATAGAATCAAAG-TTTTCCTCATAAATAAGACAACCTTGAAGACTCATACTAATC
66 ACCATTTTTGATAGAATCAAAGTTTTTCC-CTTAAATAAGACAACCATGAAGACTCATACTAATC
* * * *
37517 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATGTTAATGC
130 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
* * ***
37582 TTTGGTTTCGGAAGAAAGGCTTTCTTCCCACCAATTTTTTGCAAAGTCTAAGTTTGGGCCTCAAA
195 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * *
37647 TGAGACAAACATGGATTCCA-TAAATGATCTTCATTCATTTTGTGATGAGGCACAATAAACACAT
259 TGAGACAAACATGGATTCTAGT-AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* ** * * * *
37711 TCTCTTCATTAGGATAAAAAATGTTGATGATTTT-TTTTGCGTGGAAATCTTTTCTTTGCTCAAT
323 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * * * * * * **
37775 TTTCCTTGAAATAAAAATTCAACCCTCAAATATGACAAGCATCGATTCTTGCAATAGTCTCCACC
388 TTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATT
37840 CTTTTCAAGATTGGGAACCAAGAA
453 CTTTTCAAGATTGGGAACCAAGAA
** * * * *** * *
37864 -ACATTCCCTTCATTAGGATATATGGCATTAATGCTTTGGTGTCACAAGAAATGGTTTTCTTTCA
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
* * * * * * * * *
37928 ACCATTTTCAGATAAAATTAAAGTTTGTCTCTCAAATAACACATA-CAAGAA-TCGTCATACTAA
66 ACCATTTT-TGATAGAATCAAAGTTTTTCCCTTAAATAAGACA-ACCATGAAGAC-TCATACTAA
* * * * * *
37991 TCCCCAATATTTTTAGCATTAGGCACCATAAACGTAGTCTTCTCTTTAGGATACATGATATTGAT
128 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAT
* *
38056 GCTTTGGCTTT-GCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCACA
193 GCTTTGG-TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* *
38119 AATGAGACAAACATGGGTTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
257 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * ** *
38184 TTCTCCTAATTATGATAAATGATACTGATGATTTTCTTTTGGTTGGAAATCTTTTCTTTGCCCAA
322 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * ** * * * * * * * *
38249 TTTTCCATAAAATAAAAATTCATCTATGAAATAAGGCAAGCA-CTGATTCTTGTAACAGTCTTCT
387 TTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATC-GATTGTCGTAACAGTCTCCA
*
38313 TTCATTTT-AAGATT-GG-A--AACAA
451 TTC-TTTTCAAGATTGGGAACCAAGAA
* * * * ** * *
38335 -ACATTCCTTTCATTAAGATACATGACATTGATGCTTTGGGGTCATAA-AAAAAGCTTCTCTTTC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAA-CTTTTATTTC
* * * * *
38398 CACTATTTTTGATAGAATCAAAGTTTGT--C-----T-CG--AA-C----AG--TCATTCCAATC
65 CACCATTTTTGATAGAATCAAAGTTTTTCCCTTAAATAAGACAACCATGAAGACTCATACTAATC
* * * * * *
38446 CCCATTCTTTTTAGGATTAGGCACCATAAACACAATCTTCTAATAAGGATGCATGATATTGATGC
130 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
** * * ** * * * * **
38511 TTTCATTTTGCAAGAAAGGCTTTCTTACTGCCAATTTTTGTGACGTTTAAATTTGTGCCTCAAAT
195 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * * *
38576 AAGACAAACATGGATTCTAGTAATGATCTTCCTTTATTTTGTGTTTTGACACTATAAACACATTC
260 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *** * * ** *
38641 TCCTTATTAGGATAAATGATAACAATGATTTTCTTTTCCATGAAAATCTTTTGATTCCCCTATTT
325 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * *
38706 TCCTTAAAATCAAAATTCATTCCTTAAATATGACAAGGATCGATTGTCATAATAGTCCCCATTCT
390 TCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATTCT
*
38771 TTTTAAGATTGGGAACCAAGAA
455 TTTCAAGATTGGGAACCAAGAA
* *** * * *
38793 CACATTCCCTTCATTAGGATGCATGACATTGATG-TTTGCCATCGCAAGGAAAGCTTTTCTTTCC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
* * * * *
38857 ACCGTTTTTGATAGAATCAAA-ATTTGCCTTTAAAATAAGACAACCATGAAGAGT-ATACTAATC
66 ACCATTTTTGATAGAATCAAAGTTTTTCCCTT-AAATAAGACAACCATGAAGACTCATACTAATC
* * * **
38920 CCCATTCATTTT-AGGGTTAGGCACCATAAATATAGTCATCTC--------ACA-G-TATTGACA
130 CCCATTC-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATG
* * * * *
38974 CTTTGGTTTTGCAAGAAAGGCTTTCTACCCGCCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAA
194 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * *
39039 TTAGACAAACAAGGATTCTAGTACTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
259 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * *
39104 CTCCTCATAAGGATAAATGATAATGATGA-TTTATTTTGCATGGAAATCTTTTCCTTGCCCTATT
324 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * *
39168 TTCTTTAAAATCAAAATTCATCCTTTAAATATGACATGGATCGATTGTCGTAACAGTCTCCATTC
389 TTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATTC
* *** **
39233 TTTACAAGATAATGAACTGAGAA
454 TTTTCAAGATTGGGAACCAAGAA
* * * * * * * *
39256 CACATTCTCTTCATTAGGATGCATGACATTGAT-ATTTGCTGTCGCGAGAAAAGCTTTTCTTTTC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
* * * * * * * *
39320 ACCGTTTTTGATAGAATCAAAGCTTGTCTCTCATAA-AAGACAACCACGAATAATCATACTAATC
66 ACCATTTTTGATAGAATCAAAGTTTTTCCCTTA-AATAAGACAACCATGAAGACTCATACTAATC
* *
39384 CCCATTCTTTTCTA-GATTAGGCACTATAAACATAGTCTTCTCTTTAGG-TACATG-TATTGATG
130 CCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATG
* ** * * * *
39446 ATTTGGTTTCAAAAGAATGGCTTT-TCCCCACCAATTTTCGTAAAGTCTAAGTTCATGCCTCAAG
194 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * *
39510 TGAGACAAACATGGAATCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACAATAAACACATT
259 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
** * ** * *
39575 CTCCTCATTAGGATAAGCGATATTGATGTTTTTCTTCCGCATCGAAATCTTTTCTTTTCCCTA-T
324 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * * * * *
39639 TGCTTGTAAAATCAAAATTCATCCCTTAAATATGACAAAAATCAATTGTCATAACAGTGTCCACT
389 TTCCT-TAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATT
* * * *
39704 ATTTTCAAGATTAGGAACTAGGAA
453 CTTTTCAAGATTGGGAACCAAGAA
* *
39728 TACATT--CTTCATTAGGATGCATAACATTGATGCTTTGGTGTCGCAAGAAAAATTTTTATTTCC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
** *
39791 ACCAGGTTTGATAGAATCAAAG-TTTTCCTCTTAAATAAGACAACCATGAAGACTCATGCTAATC
66 ACCATTTTTGATAGAATCAAAGTTTTTCC-CTTAAATAAGACAACCATGAAGACTCATACTAATC
* *
39855 CCCATTCTTATCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
130 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
* * * *
39920 TTTGGTTTCGTAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAAT
195 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * *
39985 GAGACAAACATGAATTCTAGCAAGGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTC
260 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * * * ** * *
40050 TCCTCGTTATGACAAATGATATTTACGATTTTCTTTTGCGTGAAAAGATTATCTTTGCCTTATTT
325 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * *
40115 TCCTGAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCATAACAATCTCCATTCT
390 TCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATTCT
* *
40180 TTTCAGGATTGGGAACTAAGAA
455 TTTCAAGATTGGGAACCAAGAA
* * * ** * * * * * *
40202 CACATTGCTTTCATTAGGATAAATGGCATTGATGCTTTGGTATCACAGGAAATGA-TTTTCTTTC
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAA-AACTTTTATTTC
** * * * * *
40266 CATCGTTTTTTGATAGAATCAAAGTTTGTCTCTCAAATAACTA-AAACATG--GA-TCATTAAAC
65 CA-CCATTTTTGATAGAATCAAAGTTTTTCCCTTAAATAA-GACAACCATGAAGACTCA-T--AC
* ** * *
40327 TAATCCCCATT-TTTTTAACATTAGGCACCATGAACATAGTCTTCTCATTAGGATACACGATATT
125 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * * *
40391 GATGCTTTGGTTTTGCGAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCCAAGTTCGTGCCT
190 GATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
* * * * * * *
40456 CAAATGAGATAAAAATGGATTCCAGTAATGTTCTTCGTTCATTTTGTGATTAGGCACAAAAAACA
255 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* ** * *
40521 CATTCTCTTTGTTTGGATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCTC
320 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * * * * *
40585 TATTTCCCTTAAAATAAAAATTCA-ACCTGTAAATATGACAAGGATCGATTCTTGCAATAGTCTC
385 TATTTTCCTTAAAATCAAAATTCATCCCT-TAAATATGACAAGAATCGATTGTCGTAACAGTCTC
** * * *
40649 CACCCTTTTTTAAGATTGAGAAGCAAGAA
449 CATTC-TTTTCAAGATTGGGAACCAAGAA
* * * * * * *
40678 -ACAATCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAATGA-TTTTCTTTT
1 TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAA-AACTTTTATTTC
* * * ** * * * * * * *
40741 CACCGTTTTTGGATCGAATAAAAGTTGATCTCTCAAATAACACAAACAGGAA-TCGTCGTACTAA
65 CACCATTTTT-GATAGAATCAAAGTTTTTCCCTTAAATAAGACAACCATGAAGAC-TCATACTAA
* * * * * * *
40805 TCCCCATTATTTTTAGCATTAGGCACCATAAACATAGTTTTCTCATTACGATACACGATATTGAC
128 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAT
*
40870 GCTTTGGCTTT-GCAAGTAAGGCTTT-TATCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
193 GCTTTGG-TTTCGCAAGAAAGGCTTTCT-TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
* *
40933 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACAT
256 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * *
40998 ATTCTCCTCATTATGATAAATGATATTCATGATTTTCTTTTGCATGGAAATATTTTCTTTCCCCT
321 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * * * *
41063 ATTTTTC-T----T--AAA---A----TTAAATATGACAAGAATTGTTTTTCATAACAGTCTCTA
386 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCA
* *
41114 TTCTTTTCAAGATTGGGAACTAAAAA
451 TTCTTTTCAAGATTGGGAACCAAGAA
* * * * * *
41140 TACATTTCCTTTATTAGGATGCA-AAGCATTGACGCTTTTGTGTCACAAGAAAAACTTTTATTTC
1 TACATTCCCTTCATTAGGATGCATGA-CATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTC
* *
41204 CACCATTTTTGATAGAATTAAAG-TTTTCCTCTTAAATAAG---A-CATGAATACTCATACTAAT
65 CACCATTTTTGATAGAATCAAAGTTTTTCC-CTTAAATAAGACAACCATGAAGACTCATACTAAT
* * * * * * *
41264 CCCTATTCTTTTCAAGATTTGGCACCATAAATATAGTCTTCTCA-TAGGGATAAACGATATTGAA
129 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA-GGATACATGATATTGAT
* * * * * *
41328 GCTTTGGTTTCACAAGAAAGGCCTTCTTCCCACAAATTTTTGCAAAATCTAAGTTCGTGCCTCAA
193 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * *
41393 ATGAGACAAACATGGATTCCAGTAATAATCTTCATTCATTTTGTGATTAGGCACAATAAACACAT
258 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
41458 TCTCCTCATTAGGATAAATGATATTGATG
323 TCTCCTCATTAGGATAAATGATATTGATG
41487 CTTTGGTGTC
Statistics
Matches: 4987, Mismatches: 872, Indels: 277
0.81 0.14 0.05
Matches are distributed among these distances:
452 3 0.00
453 85 0.02
454 193 0.04
455 4 0.00
456 1 0.00
457 7 0.00
458 244 0.05
459 38 0.01
460 1 0.00
461 3 0.00
462 38 0.01
463 289 0.06
464 193 0.04
465 68 0.01
466 225 0.05
467 101 0.02
468 3 0.00
469 2 0.00
470 53 0.01
471 296 0.06
472 135 0.03
473 162 0.03
474 788 0.16
475 979 0.20
476 948 0.19
477 121 0.02
478 7 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
TACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTATTTCC
ACCATTTTTGATAGAATCAAAGTTTTTCCCTTAAATAAGACAACCATGAAGACTCATACTAATCC
CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCT
TTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATCGATTGTCGTAACAGTCTCCATTCTT
TTCAAGATTGGGAACCAAGAA
Found at i:44250 original size:475 final size:473
Alignment explanation
Indices: 41451--47403 Score: 6247
Period size: 475 Copynumber: 12.5 Consensus size: 473
41441 AGGCACAATA
* * *
41451 AACACATTCTCC-TCATTAGGATAAATGATATTGATGCTTTGGTGTCACAAGAAATGGTTTTCTT
1 AACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA-GCTTTTCTT
* * * * *
41515 TTCACCGTTTTTTGATAGAGTCAAAGTTTTCTCTCAAATAATAGA-AACC-TGAA-TCGTCGTAC
64 TCCACCG-TTTTTGATAGAATCAAAGTTTTCTCTTAAAT-A-AGACAACCATGAAGAC-TCATAC
* * * * * *
41577 TAATCCCCAATATTTTTAGCG-TTAGGCACAAAAAACATAGTCTTCTTATTAGGATACATGATAT
125 TAATCCCCATTCTTTTTAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * * * * *
41641 TGATGATATAGCTTT-GCAATAAAGGCTTTTTTCCCACCCATTTTTG-AAAGTCTAAGTTCATGC
189 TGACGCT-TTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
41704 CAT-ATATGAGACAAACATGGGTTCTTGTAAGGATCTTCATTTATTTTGTGATTAAGCACTATAA
253 C-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * ** *
41768 ACACATTCTTCTAAATATGATAAATGATACTGATGATTTTCTTTTGGTTGCAAATCTTTTCTTTG
317 ACACATTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * * * * *
41833 CCCTATTTTCCATGAAATCAAAATTCAT-CTTTGAAATAAGGCAAGCACTGGTTCT-TGTAATAG
382 CCCTATTTTCCTTAAAATCAAAATTCATCCCTT-AAATATGACAAG-AATTGTT-TGTGTAACAG
* *
41896 TCTCCATTCATTTCAAGATTGGGAACCAAA
444 TCTCCATTCTTTTCAAGATTGGGAACCAAG
* * * * * * *
41926 AACACATTCCTTTCATTAAGATACATTACATTAATGCTTTGGGGTCATATGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAG-AAAGCTTTTCTTT
** * * * * *
41991 CCACAATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAACAGTCATTCCAAT
65 CCACCGTTTTTGATAGAATCAAAGTTT-TCTCTTAAATAAGACAACCATGAAGACTCATACTAAT
* * * * * * * *
42056 CCCCATTCTTTTTAGGATTGGGCACCATAAACCTAATCTTTTGATAAAGATACACGATATTGACA
129 CCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGACG
* * * * ***
42121 TTTTGGTTTGGCAAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTAAATCAAA
194 CTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * * * * * * *
42186 TGAGACAAAAATGAATTCTAGCAAGGATCTTCATTCCTTTTGTGAATAGGTAGTATAAACACAAT
259 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
42251 CTCTTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGGAAATTTTTTCATTGCCCTATT
324 CTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * ** * * * *
42316 TTCCTTAAAATCAAAATTAATTCCTTAAATATAAGA-AATGCTTCTTTTTCTTTTAACAGACTCC
389 TTCCTTAAAATCAAAATTCATCCCTTAAATAT--GACAA-GAAT-TGTTT-GTGTAACAGTCTCC
*
42380 ATTCTTTTCAAGATTGGGAACCAAA
449 ATTCTTTTCAAGATTGGGAACCAAG
* * * * * *
42405 AACACATTCCTTTTATTAGGATACATGACATTGATCCTTTAGG-GCCATAAGAAATGCTTCT-TT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCACAAGAAA-GCTTTTCTT
* * ** * * * * * *
42468 TCCACCATTGTTGAGGGAATCAATA-TTTGTCTATTAAATAAGACAAACATGAATAGTCACACCA
64 TCCACCGTTTTTGATAGAATCAA-AGTTT-TCTCTTAAATAAGACAACCATGAAGACTCATACTA
** * *
42532 ATCCCCATTAATTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGA
127 ATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
* * * * ** * * *
42597 CACTTTCGTTTGGCAAGAAAGGCTTTTTTGCCATTAATTTTTGCATAGTCTAAGTTCGTGCCTCA
192 CGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * *
42662 AATGAGACAAACATGGATT-TGAGTAATGATCTTCCTTCCA-TTTGTGTTTAGACACTATAAACG
257 AATGAGACAAACATGGATTCT-AGTAATGATCTTCATT-CATTTTGTGATTAGGCACTATAAACA
* * * * * * *
42725 CATTCTCCACATTAGGATAAATTATAATGATGATTTTTTTTTGCATGAAAATCTTTTCATTGCCC
320 CATTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * * * * * *
42790 TATTTTCTTTGAAATCAAAATTCATTCCTTCAATTTGACAAGGATCGATCGTTGTAACAGTCTCC
385 TATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATTGTTTG-TGTAACAGTCTCC
* * *
42855 ATTCTTTTTAAGATTGGGATCCAAA
449 ATTCTTTTCAAGATTGGGAACCAAG
* * * *
42880 AACACATTCCCTTCATTAGGATGCATGACATTGATGCTTT-CTGTCGCAAAAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC-AAGAAAGCTTTTCTTT
* * *
42944 CCACTGTTTTTGATAGAATCAAA-TTTTGCCTCTAAAATAAGACAACCATGAAGAGT-ATACTAA
65 CCACCGTTTTTGATAGAATCAAAGTTTT--CTCTTAAATAAGACAACCATGAAGACTCATACTAA
* * *
43007 TCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCATCTCATAAGGATACACGGTATTGAC
128 TCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAC
* * * * * *
43072 ACTTTGGTTTTC-CAAGAAAGGCTTTCTACCCACCAA-TTTTGCAAAGTCTAAATTCGTGCCTCA
193 GCTTTGG-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * *
43135 AATTAGACAAACATCGATTCTAGTAATGATCTTCATTCATTTTGTAATTACGCACTATAAACACA
257 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * **
43200 TTCTCCTCCTTAGGATAAATGATAATGATGATTTTATTTTGCATAAAAATCTTTTCTTTGCCCTA
322 TTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * *
43265 TTTTCCTTAAAATCAAAATTTATCCCTTAAAAATGACAAGGATTGATTGTCGTAACAGTCTCCAT
387 TTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATTGTTTGT-GTAACAGTCTCCAT
*
43330 TCTTTTCAAGA-TGGTGAACTAAG
451 TCTTTTCAAGATTGG-GAACCAAG
* * * *
43353 AAACACATTCCCTTCATTAGGATGCATGACATTGAT-ATTTGTTGTCGCAAGAAAGCTTTTCTTT
1 -AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAGCTTTTCTTT
* * * *
43417 CCACCGTTTTTGATAGAATCAAAACTTGTCTCTTATAA-AAGACAACCATGAATAATCATACTAA
65 CCACCGTTTTTGATAGAATC-AAAGTTTTCTCTTA-AATAAGACAACCATGAAGACTCATACTAA
* *
43481 TCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGATATTGA
128 TCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
* * ** * *
43545 TGATTTGGTTTCAAAAGAAAGGC-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTTA
192 CGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * *
43609 AATGAGACAAACATGGAATCTAGTAATGTTCTTCATTCATTTTGTGATTAGGGACTATAAACACA
257 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * *
43674 TTTTCCTCATTATGATAAATGATATTCATGATTTTCTTTTGCATGGAAATATTTTTTTTACCCTA
322 TTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* *
43739 TTTTCCTTAAAATTAAAATTCATCCCTTAAATATGACAAGAATTGTTTGTGATAACAATCTCCAT
387 TTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATTGTTTGTG-TAACAGTCTCCAT
*
43804 TCTTTTCAAGATTGGGAACTAAG
451 TCTTTTCAAGATTGGGAACCAAG
* * * * * *
43827 AATACATTCCCTTCATTAGGATGCATGACATTGATGCCTTCGTGTCGCAAGAAAGCTTTTATTTC
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAGCTTTTCTTTC
**
43892 CACCAG-TTTTGATAGAATCAAAGTTTTCCTCTTAAATAAGACAACCATGAAGACTTGTACTAAT
66 CACC-GTTTTTGATAGAATCAAAGTTTT-CTCTTAAATAAGACAACCATGAAGACTCATACTAAT
* * *
43956 CCCCATTCTTCTTAGGATTAGGCACCATGAACATAGTCTTCTCATTAGGATACACGATATTGATG
129 CCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGACG
* * *
44021 CTTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTTAAA
194 CTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * * *
44086 TGAGACAAACATGAATTCTAGCAAGGAGCTTCATTCATTTTGTGATTAGGGACTATAAACACATT
259 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
44151 CTCCTCATTATGATAAATGATATTCATGATTTTCTTTTGCATGGAAATATTTTTTTTACCATATT
324 CTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* *
44216 TTCCTTAAAATTAAAATTCATCCCTTAAATATGACAAGAATTGTTTGTGATAACAATCTCCATTC
389 TTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATTGTTTGTG-TAACAGTCTCCATTC
*
44281 TTTTCAAGATTGGGAACTAAG
453 TTTTCAAGATTGGGAACCAAG
* * * * * * *
44302 AATACATTCCCTTCATTAGGATGCATGCCATTGATGCCTTCGTGTCGCAAGAAAGCTTTTATTTC
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAGCTTTTCTTTC
*
44367 CACCAG-TTTTGATAGAATCAAAGTTTTCCTCTTAAATAAGACAACCATGAAGACTTATACTAAT
66 CACC-GTTTTTGATAGAATCAAAGTTTT-CTCTTAAATAAGACAACCATGAAGACTCATACTAAT
* * *
44431 CCCCATTCTTCTTAGGATTAGGCACCATGAACATAGTCTTCTCATTAGGATACACGATATTGATG
129 CCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGACG
* * *
44496 CTTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTTAAA
194 CTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * * *
44561 TGAGACAAACATGAATTCTAGCAAGGATCTTCATTCATTTTGTGATTAGGGACTATAAGCACATT
259 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * * * **
44626 CTCCTCGTTATGATAAATGATATTTATGATTTTCTTTTGCGTGAAAATATTATCTTTAACCTATT
324 CTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * *** * *
44691 TTCCTTAAAATCAAAATTCATCCCTTAAATATGATAAAAATCAATTGTCATAACAATCTCCATTC
389 TTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATTGTTTGT-GTAACAGTCTCCATTC
*
44756 TTTTCAAGATTGGGAACTAAG
453 TTTTCAAGATTGGGAACCAAG
* * * * * * * * *
44777 AACACATTGCTTTCGTTAGGATAAATGGCATTAATGCTTTGGTATCACGAGAAATGGTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA-GCTTTTCTTT
* * * **
44842 CCACCGTTTTTTGATAGAATCAAAGTTTGTCTCTCAAATAACACAAACATG--GATCGTTGTACT
65 CCACCG-TTTTTGATAGAATCAAAGTTT-TCTCTTAAATAAGACAACCATGAAGA-C-TCATACT
* *
44905 AATCCCCATT-TTTTTAGCATTAGGCACCATAAACATAGTCTTTTCATTAGGATACACGATATTG
126 AATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG
* * *
44969 AAGCTTTGGGTTT-GCGAGAAAGGC-TTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCT
191 ACGCTTT-GGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
* * * * *
45032 CAAATGAGAC--ACGTGGATTCCAGTAATGATCTTCATTCATTTTGTGATTAGGTACAAAAAACA
255 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * *
45095 CATTCTCCTTATT-TGGATAAATGATATTAATGATTTT-TTTTGCATCGAAATCTTTTCTTTGCT
320 CATTCTCCTCATTAT-GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * * * *
45158 CTATTTCCCCTTAAAATAAAAATTCAACCCGTAAATATGACAA-AGATCGATTCT-TGCAATAGT
384 CTATTT-TCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGA-ATTG-TT-TGTGTAACAGT
** * **
45221 CTCCACCCTTTTTAAGATTGGGAAGTAAG
445 CTCCATTCTTTTCAAGATTGGGAACCAAG
* * *
45250 AA-ACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGATATGATTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGA-AAGCTTTTCTTT
* * * * * * * *
45314 CCACCGTTTTTGGATCGAATCAAAGTTTGTCTCTCAAAAAACACAAACATGAATAATCGTACTAA
65 CCACCGTTTTT-GATAGAATCAAAGTTT-TCTCTTAAATAAGACAACCATGAAGACTCATACTAA
* * * *
45379 TCCCCATTATTTTTAGCATTAGACACCATAAACATAGTCTTCTCATTAGGATACACGATATTCAC
128 TCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAC
* *
45444 GCTTTGGTTTTGCAAGCAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
193 GCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * *
45509 ATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATTAACACAT
258 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * * *
45574 TCTCCTCATTATGATAAATGATATTCATGATTTTCTTTTGCGTGGAAATATTTTCTTTACCTTAC
323 TCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * *
45639 TTTCCTTAAAATTAAAATTCATCCCTTAAATATGACAATAATTGTTTTTGATAATAGTCTCCATT
388 TTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATTGTTTGTG-TAACAGTCTCCATT
* *
45704 CTTTTCAAGATTAGGAACTAAG
452 CTTTTCAAGATTGGGAACCAAG
* * * * * * *
45726 AATACATTCCCTTCATTAGGATGCATGACATTGATGCCTTAGTGTCGCAAGAAAAACTTTTATTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAG-AAAGCTTTTCTTT
* *
45791 CCACCATTTTTTATAGAATCAAAGTTTTCCTCTTAAATAAGACAACCATGAAGACTCATACTAAT
65 CCACCGTTTTTGATAGAATCAAAGTTTT-CTCTTAAATAAGACAACCATGAAGACTCATACTAAT
* * * * * * *
45856 CCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATAAACGATATTGAAG
129 CCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGACG
* * * *
45921 CTTTGGTTTAGCAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAA
194 CTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* *
45986 TGAGACGAACATGGATT-TCAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACAT
259 TGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * *
46050 TCTCCTCATTAGGATAAATGATATTGAAGATTTT-TTTTGCTTGGAAATCTTTTCATTGCTCTAT
323 TCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * * * * *
46114 TTTCCTTAAAATAAAAATTCAACCCTTCAATATCACAAGCACCAAT-TCT-TGCAATAGTCTCCA
388 TTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAG-A--ATTGTTTGTGTAACAGTCTCCA
**
46177 CCCTTTTCAAGATTGGGAACCAA-
450 TTCTTTTCAAGATTGGGAACCAAG
* * * *
46200 AAAACATTCCCTTCATTTGGATACATGGCATTGATGCTTTGGTGTCACAAGAAATGGTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA-GCTTTTCTTT
* * *
46265 CCACCGTTTTTTGACAGAATCAAAGTTTTCT-TTCAAATAACACAAACC-TGAA-TCGTCATACT
65 CCACCG-TTTTTGATAGAATCAAAGTTTTCTCTT-AAATAAGAC-AACCATGAAGAC-TCATACT
* * * * * *
46327 AATGCCCAATATTTTTAGCATTAGGCACCATAAACGTAGTCTTCTCATTAGGATACATGATATTG
126 AATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG
* * * * **
46392 ATGCTTTGGCTTT-TCAATAAAGGCTTTTTTCCAACCAATTTTT-TAAAAGTCTTTGTTCATGCC
191 ACGCTTTGG-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT-AAAGTCTAAGTTCATGCC
* * * * * * **
46455 TCAAATAAGACAAACATGTG-TTCTAGTAAGGAACTTCATTTATTTTGTAATTGGGTGCTATAAA
254 TCAAATGAGACAAACATG-GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * ** **
46519 CACATTGTCCTAAATATAATAAATGATACGGATGATTTTCTTTTGGTTGGAAATCTTTTCTTTGC
318 CACATTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-
* * * * * * * * *
46584 CCCTATATTCCATAAAATCAAATTTCAT-CATTGAAATAAGGCAAGCATTGATACT-TGTAATAG
382 CCCTATTTTCCTTAAAATCAAAATTCATCCCTT-AAATATGACAAGAATTG-T-TTGTGTAACAG
* * *
46647 TCTCCAGTCATTTCAAGATTGGAAACCAA-
444 TCTCCATTCTTTTCAAGATTGGGAACCAAG
* * * * * * * * *
46676 AAGCATATTCCTTTCATTAAGATACAAGACATTAATGCTTTGGGGACATAAGAAAAGCTTCTCTT
1 AA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAG-AAAGCTTTTCTT
* * * * * * * * * *
46741 TCCACTGTTTATGGTAGAATGAAAGTTTGGCTCTTAAATAAGACAAACATGAATAGTCATGCCAA
64 TCCACCGTTTTTGATAGAATCAAAGTTT-TCTCTTAAATAAGACAACCATGAAGACTCATACTAA
* * * * *
46806 GCCCCATTCTTTTTAGGATTAGCCACCATAAACATAGTTTTCTGATAAGGATACACGATATTGAC
128 TCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAC
* * * * *
46871 ACTTTGATTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAA
193 GCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC--
* *
46936 AAAT-AGACAAACATGGATTCAAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAT
256 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * *
47000 ATTCTCCTCCTTAGGATAAAAGATATTGATGATTTCCTTTTGCATGAAAATCTTTTCATTGCCCT
321 ATTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * * * * * * *
47065 ATTTT-CTTAAAATCAAAATTAATTCCTTACATATGACAAGGATCGATTATCGTAACAGCCTGCA
386 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATTGTTTGT-GTAACAGTCTCCA
* *
47129 TTCTTTT-AAGTTTGAGAACCAAG
450 TTCTTTTCAAGATTGGGAACCAAG
* * * * *
47152 AACACATTCCCTTCGTTAGGATGCCTGACATTGATG-TTT-AT-T-GCAAGAAAAGC-TTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAG-AAAGCTTTTCTTT
* * * *
47212 CCACCGTTTTTGATAAAATCAAAGTTTGCCTCTTAAAAAAGACAGCCATGAAGACTCATACTAAT
65 CCACCGTTTTTGATAGAATCAAAGTTT-TCTCTTAAATAAGACAACCATGAAGACTCATACTAAT
* * ** * * *
47277 CCCCATTCTTTTTAGGATTAGGCACCGTAAACA-AGGTCATCTCACAAGAATACATGCTATTGAC
129 CCCCATTCTTTTTAGGATTAGGCACCATAAACATA-GTCTTCTCATTAGGATACACGATATTGAC
* * * * *
47341 ACTTTTGGTTTTC-CAAGAAAGGCTTTCTACCCGCCAATTTTTGCAAAGTCTAAGTTCATGCCT
193 GC-TTTGG-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
47404 GCTGTAGCAA
Statistics
Matches: 4673, Mismatches: 687, Indels: 240
0.83 0.12 0.04
Matches are distributed among these distances:
469 1 0.00
470 112 0.02
471 66 0.01
472 150 0.03
473 542 0.12
474 929 0.20
475 1266 0.27
476 759 0.16
477 345 0.07
478 415 0.09
479 86 0.02
480 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (473 bp):
AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAGCTTTTCTTTC
CACCGTTTTTGATAGAATCAAAGTTTTCTCTTAAATAAGACAACCATGAAGACTCATACTAATCC
CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGACGCT
TTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
CCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAATTCATCCCTTAAATATGACAAGAATTGTTTGTGTAACAGTCTCCATTCTTT
TCAAGATTGGGAACCAAG
Found at i:44648 original size:158 final size:158
Alignment explanation
Indices: 43484--44649 Score: 519
Period size: 158 Copynumber: 7.4 Consensus size: 158
43474 ATACTAATCC
* * * * * * * * *
43484 CCATTCTTTT-CTAGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGATATTGATGA
1 CCATTCTTTTAGT-GATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGC
* * * *
43548 TTTGGTTTCAAAAGAAAGGC-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAAT
65 TTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATCCCTTAAAT
* * *
43612 GAGACAAACATGGAA-TCTAGTAATGTTCT
130 GAGACAAACAT-GAATTCTAGCAAGGATCT
* * * * *
43641 TCATTCATTTT-GTGATTAGGGACTATAAACACATTTTCCTCATTATGATAAATGATATTCATGA
1 CCATTC-TTTTAGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGC
** ** * *** * * *
43705 TTTTCTTTTGCATGGAAATATTTTTTTTACC-CT-ATTTTCCT-TAAAAT-TAAAATTCATCCCT
65 TTTGGTTTCACA-AGAAA-GGCTTTTTTCCCACTAATTTT--TGTAAAGTCT-AAGTTCATCCCT
* * * **
43766 TAAAT-ATGACAAGA-ATTG-TTTGT-GATAACAATCT
125 TAAATGA-GACAA-ACA-TGAATTCTAG-CAAGGATCT
* * ** *
43800 CCATTCTTTTCA-AGATT-GGGAACTA-AGAATACATTC-CCTTCATTAGGATGCATGACATTGA
1 CCATTCTTTT-AGTGATTAGGG-ACTATA-AACACATTCTCC-TCATTAGGATAAATGATATTGA
* * * * * * * * *
43861 TGCCTTCGTGTCGCAAGAAA-GCTTTTATTTCCAC-CAGTTTTGATAGAA-TCAAAGTT-TTCCT
62 TGCTTTGGTTTCACAAGAAAGGCTTTT-TTCCCACTAATTTTTG-TA-AAGTCTAAGTTCATCC-
* * ** * * *** *
43922 CTTAAATAAGACAACCATGAAGACTTGTACTAATCC
123 CTTAAATGAGACAAACATGAATTCTAGCAAGGATCT
* * * * * * * *
43958 CCATTCTTCTTAG-GATTAGGCACCATGAACATAGTCTTCTCATTAGGATACACGATATTGATGC
1 CCATTCTT-TTAGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGC
*
44022 TTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTTAAAT
65 TTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATCCCTTAAAT
*
44087 GAGACAAACATGAATTCTAGCAAGGAGCT
130 GAGACAAACATGAATTCTAGCAAGGATCT
* * * *
44116 TCATTCATTTT-GTGATTAGGGACTATAAACACATTCTCCTCATTATGATAAATGATATTCATGA
1 CCATTC-TTTTAGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGC
** ** * *** * * *
44180 TTTTCTTTTGCATGGAAATATTTTTTTTACCA-T-ATTTTCCT-TAAAAT-TAAAATTCATCCCT
65 TTTGGTTTCACA-AGAAA-GGCTTTTTTCCCACTAATTTT--TGTAAAGTCT-AAGTTCATCCCT
* * * **
44241 TAAAT-ATGACAAGA-ATTG-TTTGT-GATAACAATCT
125 TAAATGA-GACAA-ACA-TGAATTCTAG-CAAGGATCT
* * ** **
44275 CCATTCTTTTCA-AGATT-GGGAACTA-AGAATACATTC-CCTTCATTAGGATGCATGCCATTGA
1 CCATTCTTTT-AGTGATTAGGG-ACTATA-AACACATTCTCC-TCATTAGGATAAATGATATTGA
* * * * * * * * *
44336 TGCCTTCGTGTCGCAAGAAA-GCTTTTATTTCCAC-CAGTTTTGATAGAA-TCAAAGTT-TTCCT
62 TGCTTTGGTTTCACAAGAAAGGCTTTT-TTCCCACTAATTTTTG-TA-AAGTCTAAGTTCATCC-
* * * * *
44397 CTTAAATAAGACAACCATGAAGACTTATA-CTA--ATCC
123 CTTAAATGAGACAAACATG-A-A-TTCTAGCAAGGATCT
* * * * * * * *
44433 CCATTCTTCTTAG-GATTAGGCACCATGAACATAGTCTTCTCATTAGGATACACGATATTGATGC
1 CCATTCTT-TTAGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGC
*
44497 TTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTTAAAT
65 TTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATCCCTTAAAT
44562 GAGACAAACATGAATTCTAGCAAGGATCT
130 GAGACAAACATGAATTCTAGCAAGGATCT
* * * *
44591 TCATTCATTTT-GTGATTAGGGACTATAAGCACATTCTCCTCGTTATGATAAATGATATT
1 CCATTC-TTTTAGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATT
44650 TATGATTTTC
Statistics
Matches: 736, Mismatches: 190, Indels: 165
0.67 0.17 0.15
Matches are distributed among these distances:
155 4 0.01
156 13 0.02
157 79 0.11
158 397 0.54
159 216 0.29
160 24 0.03
161 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
CCATTCTTTTAGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCT
TTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCATCCCTTAAATG
AGACAAACATGAATTCTAGCAAGGATCT
Found at i:49255 original size:214 final size:214
Alignment explanation
Indices: 48878--49299 Score: 557
Period size: 214 Copynumber: 2.0 Consensus size: 214
48868 CATTGATGTT
*
48878 TGCTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTACCTTTTAAATA
1 TGCTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTA-CTTCTAAATA
* *
48943 AGACAACCATGAAGACTCATACTAATCCTTATTCTTTCTAGGATTAGGCACCATAAACAAAGTCA
65 AGACAACCATGAAGAATCATACTAATCCTCATTCTTTCTAGGATTAGGCACCATAAACAAAGTCA
* * *
49008 TCTCATAAGGAAACACGATATTGACACTTTGGTTTTC-CAA-AAAGGCTTTCTACCCACTAATTC
130 TCTCATAAGCAAACACGATATTGACACTTTGG-TTTCGAAAGAAAGGCTTT-TACCCACCAATTC
49071 TTGCAAAGTCTAAGTGCATGCC
193 TTGCAAAGTCTAAGTGCATGCC
* * * *
49093 TGCTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT-GTTCCTATATA
1 TGCTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTACTT-CTAAATA
* *
49157 AGACAACCATGAATAATCATACTAATCCTCATTCTTCTCT-GGATTAGGCACCATAAACATAGTC
65 AGACAACCATGAAGAATCATACTAATCCTCATTCTT-TCTAGGATTAGGCACCATAAACAAAGTC
* * * * * * * * *
49221 TTCTCTTTAGCACACATGATATTGATGA-TTTGGTTTCGAAAGAAAGGCTTTTTCCTACCAATTT
129 ATCTCATAAGCAAACACGATATTGA-CACTTTGGTTTCGAAAGAAAGGCTTTTACCCACCAATTC
*
49285 TTGTAAAGTCTAAGT
193 TTGCAAAGTCTAAGT
49300 TCTTGCCTCA
Statistics
Matches: 180, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
213 6 0.03
214 110 0.61
215 64 0.36
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.34
Consensus pattern (214 bp):
TGCTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTACTTCTAAATAA
GACAACCATGAAGAATCATACTAATCCTCATTCTTTCTAGGATTAGGCACCATAAACAAAGTCAT
CTCATAAGCAAACACGATATTGACACTTTGGTTTCGAAAGAAAGGCTTTTACCCACCAATTCTTG
CAAAGTCTAAGTGCATGCC
Done.