Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1248
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76318
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Found at i:2304 original size:476 final size:476
Alignment explanation
Indices: 3--8096 Score: 11289
Period size: 476 Copynumber: 17.0 Consensus size: 476
1 AA
* * * * * *
3 ACTAATCCCCATTCTTTTCCGCATTAGGCAACC-TAAACATAGTCAATCATCAAGTCAAGAATAG
1 ACTAATCCCCATTCTTTTCAGGATTAGGC-ACCATAAACGTAGTGAA-C-TC-A-T-TAGGATAG
* * * * *
67 ACGGAATTGATGCTTTGGATTCGCAAGGATGGA-TTCTTTACTCCATTTTCTATAAAGTCTAAGT
60 ACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGT
* * *
131 TCGTGCCTCAAATGAGACAAATAAGGATTCTATTAATGATCTTCATTCATTTTGTGATT-CGGCA
125 TCGTGCCTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAC-GCA
* * * *
195 CTATAAACACATTCTTTTCG-TAGGGATAAATGATTTTAACGATTTTCCTTTTGCATGGAAATCA
189 CTATAAACACATTCTTTTCGTTA-GGATAAATGATATTGATGATTTT-CTTTTGCGTGGAAATCA
* * * ** *
259 TTTCTTTGCCCTATTTTCGCTAAAATAAAAA-TCAT-CCTAAATTTTGACAATCATTGATTCTTG
252 TTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCG
* * * *
322 CAACAGTCTCCATTC-TTTCAAGATTGGGAACTAAGAACCCATTCCATTCATTAGGATACAAGAC
317 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAT
* * * *
386 ATTTATGCTTTTGGTGTCGCAA-AAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTG
382 ATTGATGC-TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* **
450 CCTCTTAAATAAGACAAGCGCGAATAGTCAT
446 CCTCTTAAATAAGACAAACATGAATAGTCAT
* * * * *
481 ACTAATCACCATTCTTTTCAGCATTAGGCACCATAAAACCTAGTCAACTCATTAGGATAGACGGA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AAACGTAGTGAACTCATTAGGATAGACGAA
* * *
546 ATTGATGCTTTGGACTCGCTAGAATGGATTTCTTCACT-CATTTTCTGTAAAGTCTAAGTTCGTG
65 ATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTG
* * * * * * * * *
610 TCTAAAATGAGACAAATAAAGATTCTGGTAATGATCTTCGTTCATTTTATGATTAGGCGA-TATT
130 CCTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGC-ACTA-T
* * * * * *
674 AAACACATTCTTTTTC-ATATGGATAATTCATATTGACGATTTTCTTATGCATGGAAATCATTTC
193 AAACACATTC-TTTTCGTTA-GGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTC
* * *
738 TTTGCCCTATTTTCCTTAAAATAAAAATCCATCCCTTAATTATGACAATCATCGATTCTCGTAAC
256 TTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAAC
803 AGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTTCATTAGGATACATGATATT
321 AGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCC-TTCATTAGGATACATGATATT
* * *
868 GATGCTTTGGTGTCACAAGAAGAGGTTTT-TTTCCATCC-TTTTTGTTAGAATAAAAGTTTGCCT
385 GATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA-CCGTTTTTGTTAGAATCAAAGTTTGCCT
*
931 CTTAAATAAGACAAACATGAATAGACAT
449 CTTAAATAAGACAAACATGAATAGTCAT
* * ** * *
959 ACTAACCCCCATTCTTTTTATCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACTG-A
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGAC-GAA
* * **
1023 ATTGATGCTTTGGATTCGCAAGAATTGATTTCTGCACTCCAATTTCTACAAAGTCTAAGTTCGTG
65 ATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTG
* * * * * *
1088 CCTCAAATGAGACAAACATA-GATTTTAGTAAAGATCTTCATTCTTTTTGTGATTAGGCACAATA
130 CCTCAAATAAGACAAACA-AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATA
* ** * * *
1152 AACAAATT-TCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGGAATCATTTCTTC
194 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* * *
1216 GCCCTACTTTCCCTAAAA-AACAATTCATCCCTTAATTATGACAATCATCGATTCTCGTAACAGT
259 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * *
1280 CTCTATTCTTTTCAAGATTGGGAACTAGGAACCCATTCCCTTCATTAGGATACAAGACATTGATG
324 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATG
* * *
1345 CTTTGGTGTCGCGAGAAAAGGTTTTCTTTCCACCATTATTGTTAGAATCAAAGTTTGCCTCTTAA
389 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
1410 ATAAGACAAACACGAATAGTCAT
454 ATAAGACAAACATGAATAGTCAT
* * * * * *
1433 GCTATTCCCTAATCTTTTCAGGATTAGGCACCATAAACGT--T-AACTCATTAGGAAAGA-AACA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGA-A
* * *
1494 ATTGATGCATTGGATTCGCAAGAATTGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCCTG
65 ATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTG
* * * * *
1559 CTTCAAATGAGACAAACAAGGATTCTAGGAGTGATCTTCATTCATTTTGTGATTACGTACTATAA
130 CCTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTAT-A
* * * * * *
1624 AACATATTCTTTTC-TCTAGGATAAATGATATTGATGATTTTGTTTTTCATGGAAAACATTTCAT
194 AACACATTCTTTTCGT-TAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
* * * * * *
1688 TGCCTTATTTTCCTTAAAATAAAAATTCATCCGTTAATTATGACAATCATCGATTCACGTAACAA
258 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * *
1753 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCATTAGGATACAAGACATTGAT
323 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGAT
* * *
1818 GCTTTGGTGTCGCAAGAAAAAGTTTTCTTTCCACCATTATTGTTAGAATCAAAGTTTGCCTCTTA
388 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
*
1883 AATAAGACAAACAAGAATAGTCAT
453 AATAAGACAAACATGAATAGTCAT
* * * * * **
1907 GCTAATCCCTAATCTATTCAGGATTAGGCACCATAAACGTAGTGAGCTCAGAAGGATAGACGAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* * * *
1972 TTGATGCTTTGGATTCGCTAGAATGGATTTCTTCACTCCAATTTCTGTAAAGCCTAAGGTCATGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * * * * *
2037 CTCAAAAAAGACAAACCAGCATTCTAGTAATGATCGTTGA-TCATTTTATGATTACACACTATAA
131 CTCAAATAAGACAAACAAGGATTCTAGTAATGATC-TTCATTCATTTTGTGATTACGCACTATAA
* *
2101 ACACATTCTCTTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
195 ACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
* *
2166 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCCTCAATTCTCATAACAGTC
260 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
*
2231 TCCATTCTTTTCAAGATTAGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGATATTGATG
325 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGATATTGATG
* * * *
2295 CTTTGGTGTCGCAAGAAAATGTTTCCTTTCCACCGTTTTTGTCAGAATCAAAATTTGCCTCTTAA
389 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
2360 ATAAGACAAACATGAATAGTCAT
454 ATAAGACAAACATGAATAGTCAT
* * * * * * *
2383 ACTAATCGCTAATCTTTTCTGGATTAGGCACCATAAACATAGTAAACTCCTTAGGATAGACGAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* *
2448 TTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGCCTAAGTTCGTGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * * *
2513 TTCAAATAACAAAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGTACTATAAA
131 CTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAA
* *
2578 CACATTCTTTTCATTAGGATAAATGATATTGATGATTTTCTTTTACGTGGAAATCATTTCTTTGC
196 CACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTGC
* * *
2643 CCTATTTTCCCTAAAATAAAAATTTCATCCCTTAATTATAACAATAATCAATTCTCGTTATC-GT
261 CCTATTTTCCCTAAAATAAAAA-TTCATCCCTTAATTATGACAATCATCAATTCTCG-TAACAGT
* * *
2707 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACAAGACATTAATG
324 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATG
2772 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
389 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
2837 ATAAGACAAACATGAGTAGTCAT
454 ATAAGACAAACATGAATAGTCAT
* * * * **
2860 ATTAATCCCCATTCTTTTCAAGATTAGACACCATAAACGTAGTGAGCTCAGAAGGATAGACGAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* * * *
2925 TTGATGCTTTGGATTCGCTAGAATGGATTTCTTCACTCCAATTTCTGTAAAGCCTAAGGTCATGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * * * *
2990 CTCAAAAAAGACAAACCAA-CATTCTAGTAATGATTGTTGA-TCATTTTATGATTACGCACTATA
131 CTCAAATAAGACAAA-CAAGGATTCTAGTAATGA-TCTTCATTCATTTTGTGATTACGCACTATA
3053 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
194 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* * * *
3118 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTATTTATGATAATCCTCAATTCTCATAACAGT
259 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
**
3183 CTCCATTCTTTTCAAGATTGGGAACTAAGAACTTATTCCCTTCATTAGGATA-AGTGATATTGAT
324 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGATATTGAT
* * * *
3247 GCTTTGGTGTCGCAAG-AAATGTTTCCTTTCAACCGTTTTTGTCAGAATCAAAGTTTGCCTCTTA
388 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
*
3311 AATAAGACAAACACGAATAGTCAT
453 AATAAGACAAACATGAATAGTCAT
* * * * * * *
3335 ACTAATCGCTAATCTTTTCAGGATTAGGCACCATAAACATAGTCAACTCCTTGGGATAGACGAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* * **
3400 TTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTTTGTAAACCCTAAGTTCGTGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * * *
3465 TTCAAATAACAAAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGTACTATAAA
131 CTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAA
* * * *
3530 CACATTCTTTTCGTTAGGATAAATGCTATTAATGATTTTTCTTTTTCATGGAAATCATTTCTTTG
196 CACATTCTTTTCGTTAGGATAAATGATATTGATGA-TTTTCTTTTGCGTGGAAATCATTTCTTTG
* ** * * * * *
3595 CCTTAGCTTCCTTTAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCACATAATAGTC
260 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
*
3660 TCCATTCTTTTCAAGATTGGGAACTAAGAATCCATTCCCTTCATTAGGATACATGATATTGATGC
325 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATGC
* * * *
3725 TTTGGTGTCACAAGAAAAGGTTTTTTTTTCACCGTTTTTGTTAGAATCAAAGTTTCCCTCTTAAA
390 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAA
* * *
3790 TAAGTCAAACAAGAATAGTCAG
455 TAAGACAAACATGAATAGTCAT
* * * * * *
3812 ATTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTGAGCTCATTAGGAAAGACAAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* * *
3877 TTGATGCTTTAGATTCGCAAGAATGGATTTCGTCACTCCAATTTTTGTAAAGTCTAAGTTCGTGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * * * *
3942 CTCAACTAAGACAAACAAGGAATCTAGTAATGATATTCATTCATTTTCTGATTAGGCACTATAAA
131 CTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAA
*
4007 TACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTGC
196 CACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTGC
* *
4072 CCTATTTTCCCTAAAATAAAAATTTCATCCCTTAATTATGACAATAATCAATTCTCGTAACCGTC
261 CCTATTTTCCCTAAAATAAAAA-TTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
* * *
4137 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACAAGACATTAATGC
325 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATGC
*
4202 TTTGGTGTCACAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAA
390 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAA
4267 TAAGACAAACATGAATAGTCAT
455 TAAGACAAACATGAATAGTCAT
* * * * ** *
4289 ATTAATCCCCATTCTTTTCAGGATTAGACACCATAAACGTAGTGAGCTTAGAAAGATAGACGAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* * * * *
4354 TTGATGCTTTGGATTCGCTAGAATGGATTTCCTCACTCCAATTTCTGTAAAGCCTAAGGTCATGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * * * *
4419 CTCAAAAAAGACAAACCAGCATTCTAGTAATGATCGTCGA-TCATTTTATGATTACGCACTATAA
131 CTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTC-ATTCATTTTGTGATTACGCACTATAA
*
4483 ACACATGCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
195 ACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
* * *
4548 CCTTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCCTCAATTCTCATAACAGTC
260 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
4613 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGATATTGATG
325 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGATATTGATG
* * *
4677 CTTTGGTGTCGCAAGAAATGGTTTCCTTTCCACCGTTTTTGTTAGAATCAAAGTTTCCCTCTTAA
389 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
4742 ATAAGTCAAACATGAATAGTCAT
454 ATAAGACAAACATGAATAGTCAT
* ** * * *
4765 ATTAATCCCCACACTTTTTTA-GATTAGGCACCATAAACGTAGTGAGCTCATTACGATAGACGAA
1 ACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAA
* * * *
4829 ATTAATGCTTTGGATTCGCAAGAATGGATTTCGTCACTCCAATTTTTGTAAAGTCTAAGTTCCTG
65 ATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTG
* *
4894 CCTCAACTAAGACAAACAAGGATTCTAGTAAT-ATCTTCATTCATTTTGTGATTAGGCACTATAA
130 CCTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAA
* * *
4958 ATACATTCTTTTTGTTAGGATAAATGATATTGTTGATTTTCTTTTGCGTGGAAATCATTTCTTTG
195 ACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
* * *
5023 CCCTATTTTCCCTAAAATAAAAATTTCATCCCTTAATTATGACAATAATCAATTCTCGTAACCGC
260 CCCTATTTTCCCTAAAATAAAAA-TTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * *
5088 CTCCATTCTTTTCAAGATTAGGAACTAAGAACCCATTCTCTTCATTAGGATACATGACATGGATG
324 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATG
* * *
5153 CTTTGGTGTCACAAGAAAAGGTTTTCCTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTGTTAA
389 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
5218 ATAAGGCAAACATGAATAGTCAT
454 ATAAGACAAACATGAATAGTCAT
* * * ** *
5241 ACTAGTCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGCCAACTCAATAGGATAGACG-AA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
*
5305 TATGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCATG
66 T-TGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTG
** * * *
5370 TTTCAAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATTACGTACTATAA
130 CCTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAA
* * * * *
5435 ACAAATCCTTTTCGCTAGGATAAATGATATTGATGATTTTGGTTTT-CCTGGAAATCATTTCTTT
195 ACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTT-CTTTTGCGTGGAAATCATTTCTTT
* * * * *
5499 GCCTTATTTTTCTTAAAATAAAAATTCATCCCTTAATTAAGACAATCATCAATTCACGTAACAGT
259 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
5564 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATG
324 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATG
* * * *
5629 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTCCCTCTTAA
389 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
5694 ATAAGTCAAACATGAATAGTCAT
454 ATAAGACAAACATGAATAGTCAT
* * * * *
5717 ATTAATCCCCATTCTTTTCAGGATTAGACACCATAAACGTAGTGAGCTCATTAGGATAGATGAAG
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* *
5782 TTGATGCTTTGAATTCGCAAGAATGGATTTCTTCACTCCAATTTTTGTAAAGTCTAAGTTCGTGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * * * *
5847 TTCAATTAAGACAAA-AAGGATTCTAGTAATGATCTTAATTTATTTTGTGATTAGGCACTATAAA
131 CTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAA
* *
5911 TACATTCTTTTCGTTAGCG-TAAATGATAATGATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
196 CACATTCTTTTCGTTAG-GATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
* *
5975 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCCTCAATTCTCATAACAGTC
260 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
6040 TCCATTCTTTTCAAGATT-GGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGATATTGATG
325 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGATATTGATG
* * * * *
6103 CTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCATTTTTATTAGAATCAAAATTTGCCTCCTAA
389 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
6168 AT-AGTACAAACACGAATAGTCAT
454 ATAAG-ACAAACATGAATAGTCAT
* * * * * * *
6191 ACTAATCGCTAATGTTTTTAGGATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* * *
6256 TTAATGCTTTGGATTTGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCATGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * *
6321 TTCAAATAACACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGA-TACGTACTATAAA
131 CTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAA
* * * * *
6385 CACATTCTTTTCGTTAGGATAAATGCTATTAATGATTTTTCTTTTTCATGAAAATCATTTCTTTG
196 CACATTCTTTTCGTTAGGATAAATGATATTGATGA-TTTTCTTTTGCGTGGAAATCATTTCTTTG
* * * * * * *
6450 CCTTAGTTTCCTTTAAATAAAAATTCAACCCTTAATTATGACAATCCTCAATTCACGTAACAGTC
260 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
6515 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATGC
325 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATGC
* *
6580 TTTGGTGTCGTAAGAAAAGGTTTTCTTTTCACCGTTTTTGTTAGAATCAAAGTTT-CCTTCTTAA
390 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCC-TCTTAA
* *
6644 ATAAGTCAAACGTGAATAGTCAT
454 ATAAGACAAACATGAATAGTCAT
* * ** * * *
6667 ATTAATCCCCACTCTTTTTTGGATTAGGCACGATAAACGTAGTGAGCTCATTACGATAGACGAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* * *
6732 TTAATGATTTGGATTCGCAAGAATGGATTT-TGTCACTCCAATTTTTGTAAAGTCTAAGTTCGTG
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCT-TCACTCCAATTTCTGTAAAGTCTAAGTTCGTG
* * * *
6796 CCTCAACTGAGACAAACAAGGATTCTAATAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
130 CCTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAA
* **
6861 ATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTCC
195 ACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
* * *
6926 CCCTATTTTCCATAAAATAAAAATTCATCCCTTAATTATGACAATAATCAATTCTCGTAACGGTC
260 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
* *
6991 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATGGATGC
325 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATGC
* * * *
7056 TTTGGTGTCGTAAGAAAAGGTTTTCTTTCCACCATTTTAGTTAGAATCAAAGTTTGCCTGTTAAA
390 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAA
7121 TAAGACAAACATGAATAGTCAT
455 TAAGACAAACATGAATAGTCAT
* * * *
7143 ACTAGTCCCCATTCTTTTCAGCATTAGGCACCATAAACCTAG-GCAACTCAATAGGATAGACG-A
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTG-AACTCATTAGGATAGACGAA
*
7206 ATATGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCAT
65 AT-TGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
** * * *
7271 GTTTCAAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATTACGTACTATA
129 GCCTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATA
* * * * * *
7336 AACATATCCTTTTCGCTAGGATAAATGATATTGATGATTTTGTTTTTCCTGGAAATCATTTCTTT
194 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* * * * * * *
7401 GCCTTATTTTCCTTAAAGTAAAAATTCATCCCTTAATTATGACCATCATCGATTCACGTAACAGC
259 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
7466 CTCCATTCTTTTCAAGATT-GGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATG
324 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATG
* *
7530 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTTCACCGTTTTTGTTAGAATCAAAGTTTCCCTCTTAA
389 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
7595 ATAAGTCAAACATGAATAGTCAT
454 ATAAGACAAACATGAATAGTCAT
* * *
7618 ATTAATCCCCATTCTTTTCAGGATTAGACACCATAAACGTAGTGAGCTCATTAGGATAGACGAAA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
* *
7683 TTGATGCTTTGGACTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCATGC
66 TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
* * *
7748 TTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
131 CTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAA
* *
7813 TACATTCTTTTCGTTAGCG-TAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTG
196 CACATTCTTTTCGTTAG-GATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTG
*
7877 CCCTATTTTTCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
260 CCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTC
* * * * *
7942 TCGATTCTTTTCAAGATTGAGAACTAAGAACCCATTCCCTTCATTAGGGTACAAGACATTGATGC
325 TCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATGC
* *
8007 TTTGGTGTTGTAAGAAAAGGTTTTCTTTCCA-CGATTTTTGTTAGAATCAAAGTTTGCCTCTTAA
390 TTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCG-TTTTTGTTAGAATCAAAGTTTGCCTCTTAA
8071 ATAAGACAAACATGAATAGTCAT
454 ATAAGACAAACATGAATAGTCAT
8094 ACT
1 ACT
8097 TGATGACAAC
Statistics
Matches: 6786, Mismatches: 748, Indels: 166
0.88 0.10 0.02
Matches are distributed among these distances:
470 1 0.00
471 128 0.02
472 10 0.00
473 111 0.02
474 804 0.12
475 1251 0.18
476 2681 0.40
477 1509 0.22
478 245 0.04
479 46 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAACTCATTAGGATAGACGAAA
TTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGC
CTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAA
CACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTTGC
CCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTCT
CCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATGCT
TTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAAT
AAGACAAACATGAATAGTCAT
Found at i:8754 original size:153 final size:153
Alignment explanation
Indices: 8476--8781 Score: 585
Period size: 153 Copynumber: 2.0 Consensus size: 153
8466 ATGCTAACAA
*
8476 GCCCAACTTTTAGTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
1 GCCCAACTTTTAGTTAAACCCAAATAAAAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
*
8541 ACCAGCAGGCCCTTTATTACAAAATAACCTAAGTCCTAATTCAATCCATTGGAGCCCATATCTTC
66 ACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTC
8606 CAAATATATGCAATTAACTAGCT
131 CAAATATATGCAATTAACTAGCT
8629 GCCCAACTTTTAGTTAAACCCAAATAAAAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
1 GCCCAACTTTTAGTTAAACCCAAATAAAAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
*
8694 ACCAGCAGGTCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTC
66 ACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTC
8759 CAAATATATGCAATTAACTAGCT
131 CAAATATATGCAATTAACTAGCT
8782 TGGGCTCTTC
Statistics
Matches: 150, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
153 150 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (153 bp):
GCCCAACTTTTAGTTAAACCCAAATAAAAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACA
ACCAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTC
CAAATATATGCAATTAACTAGCT
Found at i:13266 original size:18 final size:19
Alignment explanation
Indices: 13224--13273 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
13214 TCCATCTTCT
13224 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
13242 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
13260 TCTCTCCTATCTCT
1 TCTCTCCTCTCTCT
13274 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.08, C:0.44, G:0.02, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:13270 original size:9 final size:9
Alignment explanation
Indices: 13258--13318 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
13248 CTCTCTCTAT
13258 TATCTCTCC
1 TATCTCTCC
13267 TATCTCTCC
1 TATCTCTCC
* *
13276 T-CCTAT-C
1 TATCTCTCC
* *
13283 -ATCCCTCA
1 TATCTCTCC
*
13291 TATCTCTAC
1 TATCTCTCC
13300 TATCTCTCC
1 TATCTCTCC
13309 TATCTCTCC
1 TATCTCTCC
13318 T
1 T
13319 CCTATCATCC
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
9 33 0.85
ACGTcount: A:0.15, C:0.43, G:0.00, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:13278 original size:12 final size:12
Alignment explanation
Indices: 13263--13339 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 12
13253 TCTATTATCT
13263 CTCCTATCTCTC
1 CTCCTATCTCTC
13275 CTCCTATCATC-C
1 CTCCTATC-TCTC
*
13287 CT-C-ATATCT-
1 CTCCTATCTCTC
*
13296 CTACTA--TCT-
1 CTCCTATCTCTC
13305 CTCCTATCTCTC
1 CTCCTATCTCTC
13317 CTCCTATCATC-C
1 CTCCTATC-TCTC
13329 CTCCTATCTCT
1 CTCCTATCTCT
13340 TCTTTCTCTT
Statistics
Matches: 54, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
9 12 0.22
10 3 0.06
11 7 0.13
12 28 0.52
13 4 0.07
ACGTcount: A:0.14, C:0.45, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:13285 original size:42 final size:42
Alignment explanation
Indices: 13230--13348 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
13220 TTCTTCTCTC
* * * *
13230 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
*
13272 CTCCTCCTATCATCCCTCATATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
* *
13314 CTCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
13349 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.12, C:0.44, G:0.01, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:18085 original size:476 final size:476
Alignment explanation
Indices: 14956--30869 Score: 12058
Period size: 476 Copynumber: 33.5 Consensus size: 476
14946 GTTTTCATCA
* * *
14956 ATACTAATCCCCATTCTTTTCAGCATTAGGCAACATAAACATAGTCAACTCATCAGGATAGACGG
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
*
15021 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTGTAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * * *
15086 GTCTAAAATGAGACAAATAAAGATTCTGGTAATGATCTTCATTCATTTTGTGATTAGGTGA-TAT
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG-CACTAT
* * * *
15150 AAACACATTCTTTTCG-TATGGATAATTGATATTGACGATTTTCTTATGCACGGAAATCATTTCT
195 AAACACATTCTTTTCGTTA-GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
* * * * * *
15214 TTGCCCTATTTTCCATAAAATAAAAATCCATCCCTTAATTATGATAGTCATCGATTCTCGTAATA
259 TTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACA
*
15279 GTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGA
324 GTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGA
15344 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
389 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
*
15409 AAATAAGACAAACATGAATAGAC
454 AAATAAGACAAACATGAATAGTC
15432 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACTG
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGAC-G
* * * *
15497 -AATTGATGATTTGGATTCGCAAGAATGGATTTCTGCACTCCAATTTCT-CAAAGACTAAGTTCG
65 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* * * * * *
15560 TGCCTCAATTGAGATAAACATGGATTCTAGTAAAGATCTTCATTCTTTTTGTGATTAGGCACAAT
130 TGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* ** * * *
15625 AAACAAATTCTCCTCTTTAGGATAAATGATATTGATGATTTTTTTTTGCTTGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
** * * * * *
15690 CACCCTACTTTCCCTAAAA-AAAAATTCATCCCTAAATTATGACTATCATCGATTCTTGTAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * * * * *
15754 TCTCTATTCTTTTCAAAATTGGGAACTAGGAAGCCATTCTCTTCATTAGGATACAAGACATTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* * *
15819 GCTTTGGTGTCGCGAGAAAAGGTTTTCTTTCCACCATTATTGTTAGAATCAAAGTTTGCCTCTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
**
15884 AATAAGACAAACGCGAATAGTC
455 AATAAGACAAACATGAATAGTC
* * * * * * *
15906 ATGCTAATCCCTAATCTTTTCAAG-ACTAGGCACCATAAACAT--T-AACTAATTAGGAAAGACA
1 ATACTAATCCCCATTCTTTTC-AGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACG
* * * * *
15967 AAATTGATGCTTTAGATTCGCCAGAATTGATTTCTTCACTCCAATTTCCGTAAAGTCTAAGTTCC
65 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* * * * *
16032 TGCTTCAAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATTACGTACTAA
130 TGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
16097 AAACATATTCTTTTTGCTAGGATAAATGATATTGATGATTTTGTTAT-CATGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * * *
16161 TGCCTTATTTTCCTTAAAATAAAAATTCATCCCTTAATTATGACAATCATCGATTCACGTAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * * * * *
16226 TCTCCAATCTTTTCGAGATTGGGAACAAAGAACCCATTCCCTTCATTAGGATATAAGACAGTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* * *
16291 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTATTAGAATAAAAGTTTGCCTCTTT
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
16356 AATAAGACAAACATGAATAGTC
455 AATAAGACAAACATGAATAGTC
* * * * * * *
16378 ATACTAATCCCTATTCTTTTCAGCGTTAGGCACTATAAACATAGCCAACTAAATAGGAAAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * * * *
16443 AATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCCCT-CAATTTTTTGTAAGGTCTAGGTTCG
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA-TTTCTGTAAAGTCTAAGTTCG
* * *
16507 TGCCTCAAATGAGACAAATAAGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGAACTAT
130 TGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* *
16572 GAACACATTCTTTTCGTTAGGATAAATGATATTGACGATTTTCTTTTGCATGGAAATCATTT-TT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
** * * *
16636 TGCCCTATTTTTGCTAAAATAAAAATTCATCCCTAAATTTTGACAATCATCAATTCTCGCAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * * *
16701 TCTCCATTCTTTTCAAGATTAGGAACTAAAAACCCGTTCCCTTCATTAGGATACAAGACATTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
*
16766 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTGA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
16831 AATAAGACAAACATGAATAGTC
455 AATAAGACAAACATGAATAGTC
* *
16853 ATACTAATCCCCATTCTTTTCAGCATTAGGCAACATAAACATAGTCAACTCATTAGGATAGACGG
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
** **
16918 AATTGATGCTTTGGATTCGCTGGAATGGATTTCTTCACTCCAATTTCTACAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * *
16983 GCGTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCTTTTTGTGATTAGGCACAATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
** * * *
17048 AACACATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTC
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* * * *
17113 ACCCTACTTTCCCT-AAA-AAAAATTCATCCCTAAATTATGACAAT-ATTCGATTCTCGTAACAG
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCA-TCAATTCTCGTAACAG
* * ** * * * *
17175 TCTCAAATCTTTTCAAGATTCAGAACTAGGAACCCATTCACTTCATTAAGATACAAGACATTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* * ** * *
17240 ACTTTGGTGTCGCGAGAAAAGGTTTTCTTTCCACCGTTAATGTTAGAATCAATGTTTGCCTTTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
17305 AATAAGACAAACATGAATAGTC
455 AATAAGACAAACATGAATAGTC
* * * * * * * * *
17327 GTGCTAATCTCTAATCTTTTCAGGATTAGGCACCTTAAACAT--T-AACTCATTAGGAAAGACAA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
17389 AATTGGTGCTTTGGATTCGCAAGAATTGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCCT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * *
17454 GCTTCAAATGAGCCAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGTACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
17519 AACAAATCCTTTTCGCTAGGATAAATGATATTGATGATTTTGGTTTT-CCTGGAAATCATTTCTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTT-CTTTTGCATGGAAATCATTTCTT
* * * *
17583 TGCCTTATTTTTCTTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCACGTAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* *
17648 TCTCCATTCTTTTCAAGACTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
17713 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
* * *
17778 AAAAAGACAAACATGAAAAGGC
455 AATAAGACAAACATGAATAGTC
* * *
17800 ATACTAATCCCCACTATTTTCAGCATTAGGCACCATAAACATAGTCAACTCAGTAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
17865 AATTGATGCTTTGGATTCTCAAGAATGGATTTCTTCACTCCAATTCCTGTAAAGTCTAAGTTCAT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
17930 GCCTCAAATGAGACAAACAAGGATTCTAGTAATTATCGTC-TATCATTTTGTGATTATGCACTAT
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCAT-TCATTTTGTGATTAGGCACTAT
* ** * **
17994 AAACACATTCTTTCCGTTAGGATAAAACATATTGATGATTTTCTTTTTCATAAAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * ** * **
18059 TGCCCTATTTTCCTTAAAATAAAAATTCATCCTTTAATTATGGTAATCATCAATTCTCGGAATTG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
*
18124 TCTCCATTCTTTTCATGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* * * *
18189 GCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCATCGTTTTTGTTAAAATCAAAGTTTGCCTCTTT
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
18254 AATAAGACAAACATGAATAGTC
455 AATAAGACAAACATGAATAGTC
* * * * * * *
18276 ATACTAATCCCTATTATTTTCAGTATTAGGCACCATAAACATAGCCAATTTAATAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
18341 AATTGATGCTTTGGATTCGCAAGAATGGATTTATTCACTCCATTTTCTATAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
18406 GCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTGATTTTGTGATTAGGCACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *
18471 AATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTCCTTTTGCATGGAAATCATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* *
18536 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGAAATAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * * *
18601 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCATGCTTTAGGATACCTGACATGGATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* * *
18666 CTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTGTTAGAATCAAAGTTTGCCTATTAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
18731 ATAAGACAAACATGAATAGTC
456 ATAAGACAAACATGAATAGTC
* * * *
18752 ATACTAATCCCCATTCTTTTCAGCATTAGGCACAATAAACATAGCCAACTCAATAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* *
18817 AATTGACGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTGTAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
*
18882 GCCTCAACT-AGGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
131 GCCTCAAATGA-GACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* *
18946 AAATACATTCTTTTCG-T----T--A--ATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * * * *
19002 TGCCCTATTTTTCGTAAAATAAAAATTCGTCCCTTAATTATTACAATCATCAATCCTCGTAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * *
19067 TCTCCATTCATTTCAAGAATGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATGGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* *
19132 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAGTCAAAGTTTGCCTATTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
*
19197 AATAAGAAAAACATGAATAGTC
455 AATAAGACAAACATGAATAGTC
* * *
19219 ATACTAATCCCCATTCTTTTCATCATTAGGCACCATAAACATAGCCAACTCAATAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
*
19284 AATTGATGCTTTGGATTCACAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * *
19349 ACTTCAAATGACACAAACAAGGATTCTGGTAATGATCTTCATTCATTTTGTGATTA--CATCCTA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA--CTA
* * **
19412 TAAACACATTCTTTTCCTTAGGATGAATGATATTGATGATTTTCTTTTTAATGGAAATCATTTCT
194 TAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
* * * *
19477 TTG-CC--TTTTCCTTAAAATAAAAATTCATCCCTTTATTATGACAATCATCGATTCTTGTAACA
259 TTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACA
19539 GTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGA
324 GTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGA
19604 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
389 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
* *
19669 AAATAAGACAAACACGAATAGTT
454 AAATAAGACAAACATGAATAGTC
* * * * * *
19692 GTGCTAATCCCTAATCTTTTCAGGATTAGGCACCCATAAACATAGTCAACTCATCAGGATAGACG
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCA-CCATAAACATAGTCAACTCATTAGGATAGACG
* * * *
19757 AAATTGATGCTTTGCATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGGAAAGTCTATGCTCG
65 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* *
19822 TGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
130 TGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * ** *
19887 AAATACATTCTTTTCGTTAGGATAAATGATATTGATGGTTTTCTTTTGTGTGGAATTCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * * *
19952 TGCCTTATTTTCCCTAAAATAAAAATTCATCCCATAATTATGACAATAATCAATTCTCATAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * *
20017 TCTCCATTCTTTTCAAGAATGGGAACTAAGAACCCATTCACTTCATTAGGATACATGACATGGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* *
20082 GCTTTGGTGTCGCAAGAAAAGG-TTTCTTTCCACCATTTTTGTTAGAATCAAAGTTTGCCTATTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
*
20146 AATAAGACAAACATGAATAGCC
455 AATAAGACAAACATGAATAGTC
* *
20168 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGCCAACTCAATAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * * *
20233 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTATAAAATCTAAGTTTGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * *
20298 GCCTCCAATGAGACAAATAAGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTTGACACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
20363 AACACATTCTTTTCGTAAGGATAAATGATATTAACGATTTTCTTTTTCATGGAAATCATTTCCTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* * * * *
20428 GCCCTATTTTCCTTAAAATAAAAATCCATCCCTTAATTATGACAGTCATCGATTCTTGTAACAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
*
20493 CTCCATTCTTTTCAAGATTGGGAGCTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* *
20558 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTTTTTGTTAGAATCAAAGTTTGCCTCTTTA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
20623 ATAAGACAAACATGAATAGTC
456 ATAAGACAAACATGAATAGTC
* * * * * *
20644 ATACTAATCCCTATTCTTTTCAGCGTTAGGCACCATAAACATAGCCAACTTAATAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * * * *
20709 AATTGATGCTTTGGATTCGCAAGAATTGATTTATTCACTCCATTTTCTATAAAGTCTAAGTTCAT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
20774 GCCTCAACT-AGGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGT
131 GCCTCAAATGA-GACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
20838 AAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTCTTGCGTGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * * * *
20903 TGCCGTATTTTCCCTAAAATAAAAGTTCATCCGTAAATTATGACAATAATCAATTCTCGTAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * *
20968 TCTCCATTCTTTTCAAGATTGGGAACTAAAAACCCATTCCCTTCATTAGGATACAAGACTTTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* *
21033 GCTTTGGTGTCGTAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTCCCTCTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
*
21098 AATAAGTCAAACATGAATAGTC
455 AATAAGACAAACATGAATAGTC
* * ** * * * * **
21120 ATATTAATCCCCATTCTTTTCTGGTTTAGGCACCCTAAACGTAGTGAGCTCATTACAATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
** ** *
21185 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTAAAATTTCTACAATGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* *
21250 GCCTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCTTTTTGTGATTAGGCACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
21315 AATACATTTTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTGT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
*
21380 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCATAACAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * *
21445 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCCTTCCCTTCTTTAGGATA-AGTGATATTGAT
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGACATTGAT
* * *
21509 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTTTTTGTTAGAATCAAAGCTTCCCTCTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
** *
21574 AATAAGTTAAACGTGAATAGTC
455 AATAAGACAAACATGAATAGTC
* * * * ** * *
21596 TTATTAATCTCCATTCTTTTCAGGATTAGGCATAATAAAAATAGTCAACTCATTAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
** * *
21661 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTACAATGTCTATGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * * *
21726 GCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCATCGTTCATTTTGTGAGTAGGCACAATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *** * *
21791 AACACTTTCCGCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* * * * * *
21856 GCCCTACTTTCCCAAAAATAAAAATTCATCCCTAAATTATAACAATCATCGATTCTCGTAGCAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * *
21921 CTCCATTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCGTTAGGATACATGATATTGATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
*
21986 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTCCCTCTTAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
22051 ATAAGTCAAACATGAATAGTC
456 ATAAGACAAACATGAATAGTC
* * * * * * *
22072 ATATTAATCCCTATTCTTTTCTGGATTAGGCACCATAAA-ATGTAGTGAGCTCATTA-CATTAGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACA--TAGTCAACTCATTAGGA-TAGA
*
22135 CGAAATTGATGCTTTGGATTCGCAAGAATTGATTTCTTCACTCCAACTTT-TGTAAAGTCTAAGT
63 CGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA-TTTCTGTAAAGTCTAAGT
* * *
22199 TTGTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
127 TCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* * * * *
22264 TCTAAATACATTTTTTTTCGTTAGGATAAAAGATATTGATGATTTTCTTTTGCGTGG-AATCATT
192 TATAAACACA-TTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATT
*
22328 TCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATAATCAATTCTCGTA
256 TCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTA
* * *
22393 ACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCTCTTCATTAGGATACAAGACTT
321 ACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACAT
*
22458 TGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTCCCT
386 TGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCT
*
22523 CTTAAATAAGACAAACATAAATAGTC
451 CTTAAATAAGACAAACATGAATAGTC
* * * * * * * *
22549 ATATTTATCTCCTTTCTTTTCAGGATTAGGCACCATTAACATAGTCAACTCATTCGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* *** *
22614 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTACAATTTCAACAATGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
22679 GCCTCAAATAAGACAAACAAGGATTCTAGTAAAGATCTTCATTCTTTTTGTGATTAGGCACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
22744 AATACATTTTTTTCGTTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCATTTCTGT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* * * * *
22809 GCCTTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCAGCAATTCCCATAATAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * *
22874 CTCCATTCTTTTCAAGATTGGGAACCAAGAACCCCTTCCCTTCATTAGGATA-AGTGATATTCAT
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGACATTGAT
* * * * * *
22938 GCTTTGGTGTCGTAAGAAAAGGTTTTCTTTCCACTGATTTTGTTAGAGTCGAAGTTTCCCTCTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
*** *
23003 AATAATTTAAACGTGAATAGTC
455 AATAAGACAAACATGAATAGTC
* * * ** * * *
23025 ATATTAATCTCCATTCTTTTCAGGATTAGGCATAATAAAAATAGCCAACTCATTAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* ** * * *
23090 AATTGATGCTTTGGATTCGCAAGAATGGATTTGTTCACTCCAATTTCTACAATGTCTATGTTCAT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * * * *
23155 GCCTTAAATGAG----ACAATG-TCCAAG-AATGGAT-TT-GTTCATTTTGTGATTAGGCACAAC
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAAT-GATCTTCATTCATTTTGTGATTAGGCACTAT
* *** * *
23212 AAACACTTTCTACCCTTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * * * *
23277 TGCCCTACTTTCCCTAAAATAAAAATTCATCCCTAAATTATAACAATCATCGATTCTCGTAGCAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* *
23342 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATAGATGAAATTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
23407 GCTTTGGAT-TCGCAA-AAATGGATTTC-TTCACTCCAATTTTTG-TA-AAGTCTAAGTTTGTGC
390 GCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACC-GTTTTTGTTAGAA-TCAAAG-TT-TGC
* * *
23467 CTC--AACTAAGACAAACAAGGAT--TC
449 CTCTTAAATAAGACAAACATGAATAGTC
* * ** ** * * * **** * *
23491 TAGTAATGATCTTCATTCATTTTGTG-ATTAGGCACTATAAACACATTTTTTTTCGTTAGGATAA
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCATAAACATA-GTCAACTCATTAGGATAG
* * * *** * ** * ** * ** * **
23555 ATGATATTGATGATTTTCTTTGGCGTGGAAAT-CATTTCTTTGC-CCTATTTTCCCTAAAATAAA
62 ACGAAATTGATGCTTTGGATTCGC-AAG-AATGGATTTCTTCACTCC-AATTTCTGTAAAGTCTA
* * * * * *** * * * **
23618 AATTCATCCCT-TAATTATGACAATA-ATCAATTCTCGTAA-CAGTCTCCATTC-TTTTCAAGAT
124 AGTTCGTGCCTCAAATGA-GACAA-ACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGAT
* * * ** * ** ** * ** *
23679 TGGGAACTA-AGAACCCATTCCCTTCATTAGGATACAA-GACT-TTGATGCCTTGGTGTCACAAG
185 TAGGCACTATA-AACACATTCTTTTCGTTAGGATA-AATGA-TATTGATGATTTTCTTTTGCATG
* *** * * ** * * * * * *
23741 AAAAGGTTTTCTTT-CCATCGTTTT-TTTAGAATCAAAGTT--TCCCTCTTAAATAAGACAAACA
247 GAAATCATTTCTTTGCCCT-ATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACAATCA
* ** * * * * ** * * * *
23802 TTAATAGTCAT-ACTAATC-CCTATTGTTTTC-AGCGTTACGCAC-CAGAA-ACATAGCCAAC-T
309 TCAATTCTCGTAAC-AGTCTCC-ATTCTTTTCAAG-ATTGGGAACTAAGAACCCAT-TCC--CTT
* * * * * * * * * *
23861 C-TATAGGATAGACGAAATTGATGCTTTGGAT-TTGAAAG-AATGGATTTC-CTCACTCCATTTT
368 CAT-TAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACCGTTTT
* * * *
23922 CTG-TA-AAGTCTAAGTTCGTGCCTC--AACTAAGACAAACAAGGAT--TC
430 -TGTTAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* * ** ** ** *** **
23967 TAGTAATGATCTTCATTCATTTTGTG-ATTAGGCACTGTGAATACAT--TCTTTTTGTTAGGATA
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCAT-AA-ACATAGTCAACTCATTAGGATA
* * * * *** * * * ** * ** * **
24029 AATGATATTGATGATTTTCTTTTGCACGGAAAT-CATTTCTTTGC-CCTATTTTCCCTAAAATAA
61 GACGAAATTGATGCTTTGGATTCGCA-AG-AATGGATTTCTTCACTCC-AATTTCTGTAAAGTCT
** * * * * *** * * **
24092 AAGTTTATCCCT-TAATTATGACAATCATCAATTCTCA-TAAT-AGTCTCCATT-TTTTTCAAGA
123 AAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCT-AGTAATGA-TCTTCATTCATTTT-GTGA
* * * * * * * * * * * ** * * *
24153 ATGGGAACTA-AGAACCCATT-TCCTTCATTAGGATACATAACATGGATGCTTTGGTGTCGCAAG
184 TTAGGCACTATA-AACACATTCT-TTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* ** ** ** * * ** * * *
24216 AAAATGTTTTCTTCCCACCGT-TTTT-GTTAGAATCAATGTT--TGCCTCTTAAATAAGACAAAC
247 GAAATCATTTCTTTGC-CC-TATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACAATC
* ** * * * * * * ** * *
24277 ATGAATAGTCAT-ACTAATCCCCATTATTTTC-AGCATTGGGCACCATA-AACATAGTCAAC-TC
308 ATCAATTCTCGTAAC-AGTCTCCATTCTTTTCAAG-ATTGGGAACTA-AGAACCCATTC-CCTTC
* * * * * ***
24338 ATTAGGATAGATGAAATTGATGCTTTGGAT-TCGCAAG-AATGGATTT-GTT-CACTCCAATTT-
369 ATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTCCAC-CGTTTTTG
** * * * * *
24398 CCACAATGTCTAAGTTCATGCCTC--AAATGAGACAAACTTGGAT--TC
432 TTAGAA--TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* ** ** * * ** *
24443 TAGTA-AAGATCATCATTCGTTTTGTG-ATTAGGCACAATAAACACT-TTCTGCTCTTTAGGATA
1 -A-TACTA-ATCCCCATTC-TTTTCAGCATTAGGCACCATAAACA-TAGTCAACTCATTAGGATA
* * * * *** * * ** * ** * *
24505 AATGATATTGATGATTTTCTTTTGCGTGAA-AAT-CATTTCTTTGC-CCTATTTTCCCTAAAATA
61 GACGAAATTGATG-CTTTGGATT-CG-CAAGAATGGATTTCTTCACTCC-AATTTCTGTAAAGTC
* ** * * * * *** * * * * **
24567 AAAGTTTATCCCT-TAATTATGACAATCATCAATTCTCGTAA-CAGTCTCCATT-TTTTTCAAGA
122 TAAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGA
* * * * ** * * * * ** * * *
24629 ATGGGAACTA-AGAACCCATTCCCTTCATTAGGATACAA-CACATTGATGCTTTGGTGTCGCAAG
184 TTAGGCACTATA-AACACATTCTTTTCGTTAGGATA-AATGATATTGATGATTTTCTTTTGCATG
* *** * ** * ** * * * *
24692 AAAAGGTTTTCTTTCCACCGT-TTTT-GTTAGAATCAAAGCTGC--CCCTTAAATAAGACAAACA
247 GAAATCATTTCTTTGC-CC-TATTTTCCCTAAAAT-AAAAATTCATCCCTTAATTATGACAATCA
** * * * * * * ** * *
24753 -CAAATAGTCGT-GCTAATC-CCAAATCTTTTCAGGATTAGGCACCGT-A-AACGTAATCAAC-T
309 TC-AATTCTCGTAAC-AGTCTCC-ATTCTTTTCAAGATT-GGGAAC-TAAGAACCCATTC-CCTT
* ** * * * * * * *
24812 CATTAGGATAGACAAAATTGATGCTTTGGAT-TCGAAAGAATA-GATTTC-TTCACTCCAATTTC
368 CATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACC-GTTTT
* * * * *
24874 TG-TA-AAGTCTAAGTTCGTG-CT-TCAAATGAGACAAACAAGGAT--TC
430 TGTTAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* ** * * * * * *** *
24918 -TAGTAATGAACTTCATTCATTTT--GTTATTACGCACTATAAACACATTCTTTTCGTTAGGATA
1 ATACTAAT---CCCCATTC-TTTTCAG-CATTAGGCACCATAAACATAGTCAACTCATTAGGATA
* * * * *** ** * * * * *
24980 AATGATATTGATGATTTTCTTTTTCATGGAAAT-CATTTCTTTGC-CT-TATTTTCCT-TAAAAT
61 GACGAAATTGATGCTTTGGATTCGCA-AG-AATGGATTTC-TT-CACTCCAATTT-CTGTAAAGT
** * * * * * ** * ** * * ***
25041 AAAAATCCAT-CTCTTAATTTTGACAATCATCGATTCTCA-TAA-CAGTCTCCATTC-TTGTCAA
121 CTAAGTTCGTGC-CTCAAATGAGACAAACAAGGATTCT-AGTAATGA-TCTTCATTCATT-TTGT
* * * * * * * ** * *
25102 GATTGGGAACTA-AGAACCCATT-TCCTTCATTAGGATACATGATATTGATGCTTTAGTGTCGCA
182 GATTAGGCACTATA-AACACATTCT-TTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * ** * *** * * ** * *
25165 AGAAAATGTTTTCTTT-CCATCATTTTTGTTAGATTCAAAGTTTC-TCTCCTAAATAAGTGA-AA
245 TGGAAATCATTTCTTTGCCCT-ATTTTCCCTAAAAT-AAAAATTCATC-CCTTAATTA-TGACAA
* ** * * * * * *
25227 -CATGAATAGTC--AGACTAATCCCCATTCTTTTC-TGCATTAGGCACCATA-AA--CATTGTCA
306 TCATCAATTCTCGTA-AC-AGTCTCCATTCTTTTCAAG-ATTGGGAACTA-AGAACCCA-T-TC-
* * * * * * *
25285 AC-TCATTAGGACAAATGAAATTGATGCTTTGGAT-TCGCAAG-AATGGATTTCTTCTCC-CCAT
364 CCTTCATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTT-TCCACCGT
* * * * *
25346 TTTCTG-TA-AAGTCTAAGTTCGTGCCTC--AAATGAGACAAATAAGGAT--TC
427 TTT-TGTTAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* ** * * * * ** * * *
25394 AAGTAAC-GATCTTCATTCATTTT--GTAATT-GCGCACTATAAACAGA-TTATTTTTATTTGAA
1 -A-T-ACTAATCCCCATTC-TTTTCAG-CATTAG-GCACCATAAACATAGTCA-ACTCATTAGGA
* * * * *** * * ** * **
25454 TAAATGATATTGATGATTTTCTTTTGCGTGAA-AAT-CATTTCTTTGC-CCTATTTTCCCTAAAA
59 TAGACGAAATTGATG-CTTTGGATT-CG-CAAGAATGGATTTCTTCACTCC-AATTTCTGT-AAA
* ** * * * * * * *** * *
25516 ATAAAAATTCATCCCT-TAATTATGACAATCATCAATTCTCA-TAA-CAGTCTCCATTC-TTTTC
119 GTCTAAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCT-AGTAATGA-TCTTCATTCATTTT-
** * * * ** * * * ** * *
25577 AAGATTGGGAACTA-AGAACCCATTCCCTTCATTAGGATAAGTGATATTGATGCTTTGGTGTCGC
180 GTGATTAGGCACTATA-AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGC
*** *** * ** * * * * * **
25641 AACAAAAGGTTTTCTTTCCACCGT-TTTT-GTTAGAATCAAAGTT--TCCCTCTTAAATAAGTTA
244 ATGGAAATCATTTCTTTGC-CC-TATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACA
* * ** ** ** * * * * * * ** ***
25702 AACATGAATAGTTATATTAATCTCTATTCTTTGCAAGATTAGGCACCATA-AACGTAGTGAGC-T
305 ATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTA-AGAACCCA-TTCCCTT
* * * * * * * *
25765 CATTAGGATAGACGAAATTGAAGCCTTGGAT-TCGCAAG-AATGGATTTC-TT-CACTCTAATTT
368 CATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTCCAC-C--GTTT
* * * * * *
25826 TTG-TA-ATGTCTAAGTTCATG-CT-TCAAATGAGACAAATAAGAAT--TC
429 TTGTTAGA-ATCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* * ** ** * * * * ***
25871 TAGTAATGATCTTCATTCATTTTGTG-ATTACGTACTATAAACACT-TTCTTTTCATTAGGATA-
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCATAAACA-TAGTCAACTCATTAGGATAG
** * * *** ** * * * * *
25933 AATAATATTAATGATTTTCTTTTTCATGGAAAT-CATTTCATTGC-C-CTATTTTCCT-TAAAAT
62 ACGAA-ATTGATGCTTTGGATTCGCA-AG-AATGGATTTC-TT-CACTCCAATTT-CTGTAAAGT
** * * * * * * * ** * * **
25994 AAAAATTCATCCCT-TAGTTATGACAATCATCGATTCTCGTAA-GAGTCTCCATTC-TTTTCAAG
121 CTAAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTG
* * * ** * * * ** * * *
26056 ATT-GGAAACTA-AGAACCCTTTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCAA
183 ATTAGG-CACTATA-AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* *** * ** * * ** * * * * *
26119 GAAAAGGTTTTCTTTCCACCGT-TTTT-ATTAGATTCAAAGTTTC-TCTCATAAATAAGACAAAC
246 GGAAATCATTTCTTTGC-CC-TATTTTCCCTAAAAT-AAAAATTCATCCCTTAATTATGACAATC
* ** * * * * * ** *
26181 ATTAATAGTCAT-ACTAATCCCCATTCTTTTC-AGCATTAGGCACCATAAGCATAGACA---AC-
308 ATCAATTCTCGTAAC-AGTCTCCATTCTTTTCAAG-ATT-GGGAAC-TAAG-A-ACCCATTCCCT
* * * * * * * * * *
26240 TCAATAGGATAGACGAAATTGATGCTTTGGAT-TTGCAA-CAATGGATTTC-TTCACTCCAATTT
367 TCATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACC-GTTT
* * * * * * *
26302 CTG-TA-AAGTCTAAGTTCGTG-CT-TCAAATGAGACAAATAAGGAT--TC
429 TTGTTAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* * ** ** * * * * * * *** * *
26347 TAGTAATGATCTTCATTCATTTTGTG-ATTACGTACTATAAATACATTCTTTTCGTTAGGATAAA
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGA
* * *** * ** * ** * * **
26411 TGAAATTGATGATTTTCTTTTGCGTGGAAAT-CATTTCTTTGC-CCTATTTTCCT-TAAAATAAA
63 CGAAATTGATGCTTTGGATTCGC-AAG-AATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCTA
* * * * * * * * ** * **
26473 AATCCATCCCT-TAATTATGATAATCATCGATTCTCA-TAACTG-TCTCCATTC-TTTTAAAGAT
124 AGTTCGTGCCTCAAATGA-GACAAACAAGGATTCT-AGTAA-TGATCTTCATTCATTTT-GTGAT
* * * ** * * * * ** * *
26534 TGGGAACTA-AGAACCCATTCCCTTCGTTAGGATACATGGCT-TGGATGCTTTGGTGTCT-CAAG
185 TAGGCACTATA-AACACATTCTTTTCGTTAGGATAAAT-GATATTGATGATTTTCT-TTTGCATG
* *** * *** * * * * *
26596 AAAAGGTTTTCTTT-CCACCATTTTTGTTAGAATCAAAGTT--TGCCTCTTGAA-TAAGACAAAC
247 GAAATCATTTCTTTGCC-CTATTTTCCCTAAAATAAAAATTCAT-CC-CTT-AATTATGACAATC
* ** * * * * * * *
26657 ATTAATAATCAT-ACTAATCCCCATTCTTTTC-AGCATTAGGCACCATA-AA--CATAGCCAAC-
308 ATCAATTCTCGTAAC-AGTCTCCATTCTTTTCAAG-ATTGGGAACTA-AGAACCCAT-TCC--CT
* * * * * * * * *
26716 TCAATAGGATAGAAGAAATTGATGCTTTGGAT-TTG-AA-ACAATGGATTTC-TTCACTCCAATT
367 TCATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGA-AAAGGTTTTCTTTC-CACC-GTT
* * * * * *
26777 TTTG-TA-AAGTCTACGTTCGTG-CT-TCAAATGAGACAAACAAGGAT--TC
428 TTTGTTAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* * ** ** * *** * * * *** * *
26823 TAGTAATGATCTTCATTCATTTTGTG-AGTACATACTATAAACACATTCTTTTCGTTAGGATAAA
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGA
* * * *** ** * * * * * **
26887 GGATATTGATGATTTTCTTTTTCATGGAAAT-CATTTCTCTGC-CT-TATTTTCCT-TAAAATAA
63 CGAAATTGATGCTTTGGATTCGCA-AG-AATGGATTTCT-T-CACTCCAATTT-CTGTAAAGTCT
* * * ** * * ** * * * **
26948 AAATTCATCCCT-TTATTATGACAATCATCGATTCTGGTAA-CAGTCTCCATTC-TTTTCAAGAT
123 AAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGAT
* * * ** * * * * ** * * * *
27010 TGGGAACTA-AGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
185 TAGGCACTATA-AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * *** * * * * * *
27074 AAGGC-TTTCTTT-CCACTGTTTTTGATAGAATCAAAGTT--TGCCTCTTAAATAAGACAAACA-
249 AA-TCATTTCTTTGCC-CTATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACAATCAT
** * * * ** * * * ** * *
27134 CGAATAGTCGT-GCTAATC-CCTAATCTTTTCTGGATTAGGCACCATA-AACATAGTCAAC-TCA
310 C-AATTCTCGTAAC-AGTCTCC-ATTCTTTTCAAGATTGGGAACTA-AGAACCCATTC-CCTTCA
* * * * * * * *
27195 TTAGGATAGACGAAATTAATGCTTTGGAT-TCGCAAG-AATGGATTTC-TTCACTCCAATTTTTG
370 TTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACC-GTTTTTG
* * ** * * * *
27257 -TA-AAGTCTAAGTTCGTGT-TTCAAATGAGACAAAGAAGGAT--TC
432 TTAGAA-TCAAAGTTTGCCTCTT-AAATAAGACAAACATGAATAGTC
* * ** ** * * * * * * *** * *
27299 TAGTAATGATCTTCATTCATTTTGTG-AGTACGTACTATAAACACATTCTTTTCGTTAGGATAAA
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGA
* * * *** ** * * * * * **
27363 GGATATTGATGATTTTCTTTTTCATGGAAAT-CATTTCTTTGC-CT-TATTTTCCT-TAAAATAA
63 CGAAATTGATGCTTTGGATTCGCA-AG-AATGGATTTC-TT-CACTCCAATTT-CTGTAAAGTCT
* * * ** * * ** * * * **
27424 AAATTCATCCCT-TTATTATGACAATCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTCAAGAT
123 AAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGAT
* * * ** * * * * ** * * * *
27486 TGGGAACTA-AGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
185 TAGGCACTATA-AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
*** * ** * * * * * *
27550 AAGGTTTTCTTTCCACCGT-TTTT-GTTAGAATCAAAGTT--TGCCTCTTAAATAAGACAAACA-
249 AATCATTTCTTTGC-CC-TATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACAATCAT
** * * * * * * * ** * *
27610 CGAATAGTCGT-GCTAATC-CCTAATCTTTTCAGGATTTGGCACCATA-AACATAGTCAAC-TCA
310 C-AATTCTCGTAAC-AGTCTCC-ATTCTTTTCAAGATTGGGAACTA-AGAACCCATTC-CCTTCA
* * * * * * *
27671 TTAGGATAGACGAAATTGATGCTTTGCAT-TCGCAAG-AATGGATTTC-TT-CACTTCAATTTTT
370 TTAGGATACATGACATTGATGCTTTG-GTGTCGCAAGAAAAGGTTTTCTTTCCAC--C-GTTTTT
* * ** * *
27732 G-TA-AAGTCTATGTTTGTGCCTC--AACCAAGACAAACAAGGAT--TC
431 GTTAGAA-TCAAAG-TT-TGCCTCTTAAATAAGACAAACATGAATAGTC
* ** ** * * * * * * *
27775 -TAGTAATGGTCTTCATTCATTTTGTG-ATTACGCACTATAAATACATTC-TCTTCGTTAGGATA
1 ATACTAA---TCCCCATTC-TTTTCAGCATTAGGCACCATAAACATAGTCAAC-TCATTAGGATA
* * * * * ** * * * ** * ** * *
27837 AATGATATTGACGATTT-TCTTCTACATGGAAAT-CATTTCTTTTC-CCTATTTTCCCTAAAATA
61 GACGAAATTGATGCTTTGGATTC-GCA-AG-AATGGATTTCTTCACTCC-AATTTCTGTAAAGTC
* * * * * * * *** * * * **
27899 AAAATTCATCCCT-TAATTATGACAATCATCAATTATCA-TAA-CAGTCTCCATTC-TTTTCAAG
122 TAAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCT-AGTAATGA-TCTTCATTCATTTT-GTG
* * * * ** * ** * * *
27960 ATTGGGAAC-AAAGAACCCATTCCCTTCATTAGGATACCTAATATTTGCCTGATTTTCTTTTTCA
183 ATTAGGCACTATA-AACACATTCTTTTCGTTAGGATAAATGATA-TTG-ATGATTTTCTTTTGCA
* * *
28024 TGGAAATCATTTCTTTGCCTTATTTTCCTTAAAATAAAAATTCATCCCTTTATTATGACAATCAT
245 TGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCAT
*
28089 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGG
310 CAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGG
* *
28154 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGTTAGAATC
375 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATC
*
28219 AAAATTTGCCTCTTAAATAAGACAAACATGAATAGTC
440 AAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* *
28256 ATACTAATCCCCATTCCTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
28321 AATTAATGCTTTGGATTCGCAAGAATGGATTACTTCACTCCAATTTTTGTAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
28386 GCTTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGTACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
** * *
28451 AACACATTCTCCTCTTTAGGATAAATGATATTTATGATTTTCTTTTGCATGGAAATCATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* *
28516 GCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAATTATGACAATCATCGATTCTCGTAACAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * *
28581 CTCCATTCTTTTCAAGATTGGGAATTAAGAACCCATTCCCTACATTAGGATACATGATATTGATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
28646 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGCCACATAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
28711 ATAAGACAAACATGAATAGTC
456 ATAAGACAAACATGAATAGTC
* *
28732 ATACTAATCCCCATTCTTTTCAGCATTGGGCACCATAAACATAGTCAACTCAATAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
28797 AATTGATGCTTTGGATTTGTAAGAATGGATTTCTTCACTCCAATTTCTATAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * ** *
28862 -ACTACGAATGAGACAAACAAGGATTCTAGGGATGATCTTCATTCATTTTGTAATTAGGCACTAT
131 GCCT-CAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * **
28926 AAACACATTCTTTTCGTTTGGATAAATGATACTGATGATTTTCTTTTGTGTGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* **
28991 TGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTAATAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* *
29056 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCTC-TCTATTAGGATA-AGTGATATTG
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTC-ATTAGGATACA-TGACATTG
* *
29119 ATGCTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCATTTTTGTTAGAATCAAAGTTTGCCTCT
388 ATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCT
* **
29184 TAAATAAGGCAAACACAAATAGTC
453 TAAATAAGACAAACATGAATAGTC
* ** * * *
29208 ATACTAATTCAAAATCTTTTCAGGATTAGGCACCATAAACATAGTCAACTCATTAGGATAGAGGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* ** *
29273 AATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTTTGTACGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* *
29338 GCTTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTAT-
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
*
29402 AATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* * *
29467 GCCCTATTTTCCGTAAAATAAAAATTTATCCCTTAACTATGACAATCATCAATTCTCGTAACAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * * *
29532 CTTCATTCTTTTCCAGATTGAGAACTAAGAACCCATTCCCTTCATTAGGATACAAGACATTTATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* * *
29597 TTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA-C--TGTT-ATAGAATCAAAGTTTGCCTCTTAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
29658 ATAAGACAAACATGAATAGTC
456 ATAAGACAAACATGAATAGTC
* *
29679 ATAATAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCAATAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
29744 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * * *
29809 ACTTCGAATAAGACAAACAAGGATTCTACG-GATGATCTTCATTCATTTTGTAATTAGGCACTAT
131 GCCTCAAATGAGACAAACAAGGATTCTA-GTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
29873 AAACACATTCTTTTCGTT-GGATAAATAATACTAATGATTTTCTTTTGCGTGGAAATCATTTCCT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
** **
29937 TGCCAGATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTAATAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * * *
30002 TCTCCATTCTTTTCAAGACTGGGAACTAAGAATCAATTCCCTTCATTAGGATA-AGTGATATTGA
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGACATTGA
*
30066 TGCTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
389 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
* *
30131 AAATAAGGCAAACACGAATAGTC
454 AAATAAGACAAACATGAATAGTC
* * * * *
30154 ATACTAATTCCTAATCTTTTCGGTATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
30219 AATTAATGCTTTGGATTCGTAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTATGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* *
30284 GCTTCAAATGAGACAAACAA-GATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
30348 AATACATTCTTTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCGTGGAAAACATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* * * *
30413 GCCCTATTTTCCTTAAAATAAAAATTAATCCCTTAATTATGACAATCATCGAGTCTCGTAACAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * *
30478 CTTCATTCTTTTCCAGATTGGGAACTAAGAACCCATTCCCTTCTTTAGGATACATGATATTGATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* *
30543 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGTTAGAATCAAAGTTTCCCTCTTAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
* *
30608 ATAAGTCAAACATTAATAGTC
456 ATAAGACAAACATGAATAGTC
* * *
30629 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGCCAACTCAATAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * * * *
30694 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACCCCAATTTTTTTTAAGGCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * * * *
30759 GCTTCAAAGGAGACAAACAGGGATTCTAGTAAAGATCTTCATTCATTTTGAGATTAAGTACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
30824 AACATATTCTTTTCGCTAAGATAAATGATATTGACGATTTTCTTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTT
30870 TCATAAAATT
Statistics
Matches: 13369, Mismatches: 1693, Indels: 752
0.85 0.11 0.05
Matches are distributed among these distances:
465 2 0.00
466 2 0.00
467 431 0.03
468 59 0.00
469 248 0.02
470 40 0.00
471 690 0.05
472 357 0.03
473 437 0.03
474 729 0.05
475 2478 0.19
476 6488 0.49
477 991 0.07
478 287 0.02
479 107 0.01
480 13 0.00
481 5 0.00
482 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
ATAAGACAAACATGAATAGTC
Found at i:18718 original size:952 final size:952
Alignment explanation
Indices: 14956--32175 Score: 13586
Period size: 952 Copynumber: 18.2 Consensus size: 952
14946 GTTTTCATCA
* * *
14956 ATACTAATCCCCATTCTTTTCAGCATTAGGCAACATAAACATAGTCAACTCATCAGGATAGACGG
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
*
15021 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTGTAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * * *
15086 GTCTAAAATGAGACAAATAAAGATTCTGGTAATGATCTTCATTCATTTTGTGATTAGGTGA-TAT
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG-CACTAT
* * * **
15150 AAACACATTCTTTTCG-TATGGATAATTGATATTGACGATTTTCTTATGCACGGAAATCATTTCT
195 AAACACATTCTTTTCGTTA-GGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCT
* * * * * *
15214 TTGCCCTATTTTCCATAAAATAAAAATCCATCCCTTAATTATGATAGTCATCGATTCTCGTAATA
259 TTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACA
*
15279 GTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGA
324 GTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGA
15344 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
389 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
*
15409 AAATAAGACAAACATGAATAGACATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACAT
454 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACAT
* * *
15474 AGTCAACTCATTAGGATAGACTG-AATTGATGATTTGGATTCGCAAGAATGGATTTCTGCACTCC
519 AGCCAACTCATTAGGATAGAC-GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCC
* * * * * *
15538 AATTTCT-CAAAGACTAAGTTCGTGCCTCAATTGAGATAAACATGGATTCTAGTAAAGATCTTCA
583 AATTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCA
* * * ** *
15602 TTCTTTTTGTGATTAGGCACAATAAACAAATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
648 TTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTT
* * ** * *
15667 TTTTTGCTTGGAAATCATTTCTTCACCCTACTTTCCCTAAAA-AAAAATTCATCCCTAAATTATG
713 CTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATG
* * * * * * * *
15731 ACTATCATCGATTCTTGTAACAGTCTCTATTCTTTTCAAAATTGGGAACTAGGAAGCCATTCTCT
778 ACAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCT
* * * *
15796 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCGAGAAAAGGTTTTCTTTCCACCATTATTG
843 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTG
**
15861 TTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACGCGAATAGTC
908 TTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* * * * * * *
15906 ATGCTAATCCCTAATCTTTTCAAG-ACTAGGCACCATAAACAT--T-AACTAATTAGGAAAGACA
1 ATACTAATCCCCATTCTTTTC-AGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACG
* * * * *
15967 AAATTGATGCTTTAGATTCGCCAGAATTGATTTCTTCACTCCAATTTCCGTAAAGTCTAAGTTCC
65 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* * * * *
16032 TGCTTCAAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATTACGTACTAA
130 TGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * *
16097 AAACATATTCTTTTTGCTAGGATAAATGATATTGATGATTTTGTTAT-CATGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
* * * *
16161 TGCCTTATTTTCCTTAAAATAAAAATTCATCCCTTAATTATGACAATCATCGATTCACGTAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * * * * *
16226 TCTCCAATCTTTTCGAGATTGGGAACAAAGAACCCATTCCCTTCATTAGGATATAAGACAGTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* * *
16291 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTATTAGAATAAAAGTTTGCCTCTTT
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
* * *
16356 AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGCGTTAGGCACTATAAACATA
455 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATA
* * * * *
16421 GCCAACTAAATAGGAAAGACGAAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCCCT-CAA
520 GCCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
* * * * * *
16485 TTTTTTGTAAGGTCTAGGTTCGTGCCTCAAATGAGACAAATAAGGATTCTAGCAATGATCTTCAT
585 -TTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCAT
* * *
16550 TCATTTTGTGATTAGGAACTATGAACACATTCTTTTCGTTAGGATAAATGATATTGACGATTTTC
649 TCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTC
** * *
16615 TTTTGCATGGAAATCATTT-TTTGCCCTATTTTTGCTAAAATAAAAATTCATCCCTAAATTTTGA
714 TTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGA
* * * *
16679 CAATCATCAATTCTCGCAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAAAACCCGTTCCCTT
779 CAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTT
*
16744 CATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGT
844 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGT
*
16809 TAGAATCAAAGTTTGCCTCTGAAATAAGACAAACATGAATAGTC
909 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* *
16853 ATACTAATCCCCATTCTTTTCAGCATTAGGCAACATAAACATAGTCAACTCATTAGGATAGACGG
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
** **
16918 AATTGATGCTTTGGATTCGCTGGAATGGATTTCTTCACTCCAATTTCTACAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * *
16983 GCGTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCTTTTTGTGATTAGGCACAATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
** * *
17048 AACACATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTC
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* * * *
17113 ACCCTACTTTCCCT-AAA-AAAAATTCATCCCTAAATTATGACAAT-ATTCGATTCTCGTAACAG
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCA-TCAATTCTCGTAACAG
* * ** * * * *
17175 TCTCAAATCTTTTCAAGATTCAGAACTAGGAACCCATTCACTTCATTAAGATACAAGACATTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* * ** * *
17240 ACTTTGGTGTCGCGAGAAAAGGTTTTCTTTCCACCGTTAATGTTAGAATCAATGTTTGCCTTTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
* * * * * * *
17305 AATAAGACAAACATGAATAGTCGTGCTAATCTCTAATCTTTTCAGGATTAGGCACCTTAAACAT-
455 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATA
* * * * *
17369 --TAACTCATTAGGAAAGACAAAATTGGTGCTTTGGATTCGCAAGAATTGATTTCTTCACTCCAA
520 GCCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
* * * *
17432 TTTCTGTAAAGTCTAAGTTCCTGCTTCAAATGAGCCAAACAAGGATTCTAGTAATGATCTTCATT
585 TTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATT
* * * * * *
17497 CATTTTGTGATTACGTACTATAAACAAATCCTTTTCGCTAGGATAAATGATATTGATGATTTTGG
650 CATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTT-C
* * * *
17562 TTTT-CCTGGAAATCATTTCTTTGCCTTATTTTTCTTAAAATAAAAATTCATCCCTTAATTATGA
714 TTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGA
* *
17626 CAATCATCAATTCACGTAACAGTCTCCATTCTTTTCAAGACTGGGAACTAAGAACCCATTCCCTT
779 CAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTT
*
17691 CATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGT
844 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGT
* * *
17756 TAGAATCAAAGTTTGCCTCTTAAAAAAGACAAACATGAAAAGGC
909 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* * *
17800 ATACTAATCCCCACTATTTTCAGCATTAGGCACCATAAACATAGTCAACTCAGTAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
17865 AATTGATGCTTTGGATTCTCAAGAATGGATTTCTTCACTCCAATTCCTGTAAAGTCTAAGTTCAT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
17930 GCCTCAAATGAGACAAACAAGGATTCTAGTAATTATCGTC-TATCATTTTGTGATTATGCACTAT
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCAT-TCATTTTGTGATTAGGCACTAT
* ** * * **
17994 AAACACATTCTTTCCGTTAGGATAAAACATATTGATGATTTTCTTTTTCATAAAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
* * ** * **
18059 TGCCCTATTTTCCTTAAAATAAAAATTCATCCTTTAATTATGGTAATCATCAATTCTCGGAATTG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
*
18124 TCTCCATTCTTTTCATGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* * * *
18189 GCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCATCGTTTTTGTTAAAATCAAAGTTTGCCTCTTT
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
* * *
18254 AATAAGACAAACATGAATAGTCATACTAATCCCTATTATTTTCAGTATTAGGCACCATAAACATA
455 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATA
* * * * *
18319 GCCAATTTAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTATTCACTCCAT
520 GCCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
* *
18384 TTTCTATAAAGTCTAAGTTCGTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATT
585 TTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATT
* * *
18449 GATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTCCT
650 CATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCT
18514 TTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
715 TTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
* * * *
18579 AATCATCAATTCTCGAAATAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCATGC
780 AATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTC
* * * * *
18644 TTTAGGATACCTGACATGGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTGTTTTTGTT
845 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTT
*
18709 AGAATCAAAGTTTGCCTATTAAATAAGACAAACATGAATAGTC
910 AGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* * * *
18752 ATACTAATCCCCATTCTTTTCAGCATTAGGCACAATAAACATAGCCAACTCAATAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* *
18817 AATTGACGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTGTAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
*
18882 GCCTCAACT-AGGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
131 GCCTCAAATGA-GACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
*
18946 AAATACATTCTTTTCG-T----T--A--ATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
* * * * *
19002 TGCCCTATTTTTCGTAAAATAAAAATTCGTCCCTTAATTATTACAATCATCAATCCTCGTAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * *
19067 TCTCCATTCATTTCAAGAATGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATGGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* *
19132 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAGTCAAAGTTTGCCTATTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
* *
19197 AATAAGAAAAACATGAATAGTCATACTAATCCCCATTCTTTTCATCATTAGGCACCATAAACATA
455 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATA
* *
19262 GCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCACAAGAATGGATTTCTTCACTCCAA
520 GCCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
* * * * *
19327 TTTCTGTAAAGTCTAAGTTCGTACTTCAAATGACACAAACAAGGATTCTGGTAATGATCTTCATT
585 TTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATT
* *
19392 CATTTTGTGATTA--CATCCTATAAACACATTCTTTTCCTTAGGATGAATGATATTGATGATTTT
650 CATTTTGTGATTAGGCA--CTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTT
** * *
19455 CTTTTTAATGGAAATCATTTCTTTG-CC--TTTTCCTTAAAATAAAAATTCATCCCTTTATTATG
713 CTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATG
* *
19517 ACAATCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCT
778 ACAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCT
19582 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTG
843 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTG
* *
19647 TTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACACGAATAGTT
908 TTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* * * * * *
19692 GTGCTAATCCCTAATCTTTTCAGGATTAGGCACCCATAAACATAGTCAACTCATCAGGATAGACG
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCA-CCATAAACATAGTCAACTCATTAGGATAGACG
* * * *
19757 AAATTGATGCTTTGCATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGGAAAGTCTATGCTCG
65 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* *
19822 TGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
130 TGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
19887 AAATACATTCTTTTCGTTAGGATAAATGATATTGATGGTTTTCTTTTGTGTGGAATTCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
* * * *
19952 TGCCTTATTTTCCCTAAAATAAAAATTCATCCCATAATTATGACAATAATCAATTCTCATAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * *
20017 TCTCCATTCTTTTCAAGAATGGGAACTAAGAACCCATTCACTTCATTAGGATACATGACATGGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* *
20082 GCTTTGGTGTCGCAAGAAAAGG-TTTCTTTCCACCATTTTTGTTAGAATCAAAGTTTGCCTATTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
*
20146 AATAAGACAAACATGAATAGCCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATA
455 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATA
* *
20211 GCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAT
520 GCCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
* * * * *
20276 TTTCTATAAAATCTAAGTTTGTGCCTCCAATGAGACAAATAAGGATTCTAGTAATGATCTTCTTT
585 TTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATT
* * * * *
20341 CATTTTGTGATTTGACACTATAAACACATTCTTTTCGTAAGGATAAATGATATTAACGATTTTCT
650 CATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCT
* * * *
20406 TTTTCATGGAAATCATTTCCTTGCCCTATTTTCCTTAAAATAAAAATCCATCCCTTAATTATGAC
715 TTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
* * * *
20471 AGTCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAGCTAAGAACCCATTCCCTTC
780 AATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTC
*
20536 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTTTTTGTT
845 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTT
*
20601 AGAATCAAAGTTTGCCTCTTTAATAAGACAAACATGAATAGTC
910 AGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* * * * * *
20644 ATACTAATCCCTATTCTTTTCAGCGTTAGGCACCATAAACATAGCCAACTTAATAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * * * *
20709 AATTGATGCTTTGGATTCGCAAGAATTGATTTATTCACTCCATTTTCTATAAAGTCTAAGTTCAT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
20774 GCCTCAACT-AGGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGT
131 GCCTCAAATGA-GACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* *
20838 AAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTCTTGCGTGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
* * * * *
20903 TGCCGTATTTTCCCTAAAATAAAAGTTCATCCGTAAATTATGACAATAATCAATTCTCGTAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
* * *
20968 TCTCCATTCTTTTCAAGATTGGGAACTAAAAACCCATTCCCTTCATTAGGATACAAGACTTTGAT
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGAT
* *
21033 GCTTTGGTGTCGTAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTCCCTCTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
* * * ** * *
21098 AATAAGTCAAACATGAATAGTCATATTAATCCCCATTCTTTTCTGGTTTAGGCACCCTAAACGTA
455 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATA
** * ** **
21163 GTGAGCTCATTACAATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTAAAA
520 GCCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
* * *
21228 TTTCTACAATGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCATT
585 TTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATT
* * *
21293 CTTTTTGTGATTAGGCACTATAAATACATTTTTTTCGTTAGGATAAATGATATTGATGATTTTCT
650 CATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCT
* *
21358 TTTGCGTGGAAATCATTTCTGTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
715 TTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
* *
21423 AATCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCCTTCCCTTC
780 AATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTC
* * *
21488 TTTAGGATA-AGTGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTTTTTGT
845 ATTAGGATACA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGT
* * ** *
21552 TAGAATCAAAGCTTCCCTCTTAAATAAGTTAAACGTGAATAGTC
909 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* * * * ** * *
21596 TTATTAATCTCCATTCTTTTCAGGATTAGGCATAATAAAAATAGTCAACTCATTAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
** * *
21661 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTACAATGTCTATGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * * * * *
21726 GCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCATCGTTCATTTTGTGAGTAGGCACAATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *** *
21791 AACACTTTCCGCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* * * * * *
21856 GCCCTACTTTCCCAAAAATAAAAATTCATCCCTAAATTATAACAATCATCGATTCTCGTAGCAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * *
21921 CTCCATTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCGTTAGGATACATGATATTGATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
*
21986 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTCCCTCTTAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
* * * * *
22051 ATAAGTCAAACATGAATAGTCATATTAATCCCTATTCTTTTCTGGATTAGGCACCATAAA-ATGT
456 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACA--T
** * * *
22115 AGTGAGCTCATTA-CATTAGACGAAATTGATGCTTTGGATTCGCAAGAATTGATTTCTTCACTCC
519 AGCCAACTCATTAGGA-TAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCC
* * * *
22179 AACTTT-TGTAAAGTCTAAGTTTGTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTC
583 AA-TTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTC
* * * *
22243 ATTCATTTTGTGATTAGGCACTCTAAATACATTTTTTTTCGTTAGGATAAAAGATATTGATGATT
647 ATTCATTTTGTGATTAGGCACTATAAACACA-TTCTTTTCGTTAGGATAAATGATATTGATGATT
*
22308 TTCTTTTGCGTGG-AATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTA
711 TTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTA
* *
22372 TGACAATAATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCT
776 TGACAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCC
* *
22437 CTTCATTAGGATACAAGACTTTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTT
841 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTT
* *
22502 TGTTAGAATCAAAGTTTCCCTCTTAAATAAGACAAACATAAATAGTC
906 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* * * * * * * *
22549 ATATTTATCTCCTTTCTTTTCAGGATTAGGCACCATTAACATAGTCAACTCATTCGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* *** *
22614 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTACAATTTCAACAATGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
22679 GCCTCAAATAAGACAAACAAGGATTCTAGTAAAGATCTTCATTCTTTTTGTGATTAGGCACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
22744 AATACATTTTTTTCGTTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCATTTCTGT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* * * * *
22809 GCCTTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCAGCAATTCCCATAATAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * *
22874 CTCCATTCTTTTCAAGATTGGGAACCAAGAACCCCTTCCCTTCATTAGGATA-AGTGATATTCAT
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGACATTGAT
* * * * * *
22938 GCTTTGGTGTCGTAAGAAAAGGTTTTCTTTCCACTGATTTTGTTAGAGTCGAAGTTTCCCTCTTA
390 GCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
*** * * * * ** *
23003 AATAATTTAAACGTGAATAGTCATATTAATCTCCATTCTTTTCAGGATTAGGCATAATAAAAATA
455 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATA
* *
23068 GCCAACTCATTAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAATGGATTTGTTCACTCCAA
520 GCCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
* * * * * * * * *
23133 TTTCTACAATGTCTATGTTCATGCCTTAAATGAG----ACAATG-TCCAAG-AATGGAT-TT-GT
585 TTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAAT-GATCTTCAT
* * * *** *
23190 TCATTTTGTGATTAGGCACAACAAACACTTTCTACCCTTTAGGATAAATGATATTGATGATTTTC
649 TCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTC
* * * *
23255 TTTTGCGTGGAAATCATTTCTTTGCCCTACTTTCCCTAAAATAAAAATTCATCCCTAAATTATAA
714 TTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGA
* *
23320 CAATCATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTT
779 CAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTT
* * * * * *
23385 CATTAGGATAGATGAAATTGATGCTTTGGAT-TCGCAA-AAATGGATTTC-TTCACTCCAATTTT
844 CATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACC-GTTTT
* * * *
23447 TG-TA-AAGTCTAAGTTTGTGCCTC--AACTAAGACAAACAAGGAT--TC
906 TGTTAGAA-TCAAAG-TT-TGCCTCTTAAATAAGACAAACATGAATAGTC
* * ** ** * * * **** * *
23491 TAGTAATGATCTTCATTCATTTTGTG-ATTAGGCACTATAAACACATTTTTTTTCGTTAGGATAA
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCATAAACATA-GTCAACTCATTAGGATAG
* * * *** * ** * ** * ** * **
23555 ATGATATTGATGATTTTCTTTGGCGTGGAAAT-CATTTCTTTGC-CCTATTTTCCCTAAAATAAA
62 ACGAAATTGATGCTTTGGATTCGC-AAG-AATGGATTTCTTCACTCC-AATTTCTGTAAAGTCTA
* * * * * *** * * * **
23618 AATTCATCCCT-TAATTATGACAATA-ATCAATTCTCGTAA-CAGTCTCCATTC-TTTTCAAGAT
124 AGTTCGTGCCTCAAATGA-GACAA-ACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGAT
* * * ** * ** ** * ** **
23679 TGGGAACTA-AGAACCCATTCCCTTCATTAGGATACAA-GACT-TTGATGCCTTGGTGTCACAAG
185 TAGGCACTATA-AACACATTCTTTTCGTTAGGATA-AATGA-TATTGATGATTTTCTTTTGCGTG
* *** * * ** * * * * * *
23741 AAAAGGTTTTCTTT-CCATCGTTTT-TTTAGAATCAAAGTT--TCCCTCTTAAATAAGACAAACA
247 GAAATCATTTCTTTGCCCT-ATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACAATCA
* ** * * * * ** * * * *
23802 TTAATAGTCAT-ACTAATC-CCTATTGTTTTC-AGCGTTACGCAC-CAGAA-ACATAGCCAAC-T
309 TCAATTCTCGTAAC-AGTCTCC-ATTCTTTTCAAG-ATTGGGAACTAAGAACCCAT-TCC--CTT
* * * * * * * * * *
23861 C-TATAGGATAGACGAAATTGATGCTTTGGAT-TTGAAAG-AATGGATTTC-CTCACTCCATTTT
368 CAT-TAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACCGTTTT
* * * * * * **
23922 CTG-TA-AAGTCTAAGTTCGTGCCTC--AACTAAGACAAACAAGGAT--TCTAGTAATGATCTTC
430 -TGTTAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATCCCC
** ** * *** ** * * * *
23981 ATTCATTTTGTG-ATTAGGCACTGTGAATACAT--TCTTTTTGTTAGGATAAATGATATTGATGA
489 ATTC-TTTTCAGCATTAGGCACCAT-AA-ACATAGCCAACTCATTAGGATAGACGAAATTGATGC
*** * * * ** * ** * ** ** * *
24043 TTTTCTTTTGCACGGAAAT-CATTTCTTTGC-CCTATTTTCCCTAAAATAAAAGTTTATCCCT-T
551 TTTGGATTCGCA-AG-AATGGATTTCTTCACTCC-AATTTCTATAAAGTCTAAGTTCGTGCCTCA
* * *** * * ** * * *
24105 AATTATGACAATCATCAATTCTCA-TAAT-AGTCTCCATT-TTTTTCAAGAATGGGAACTA-AGA
613 AATGA-GACAAACAAGGATTCT-AGTAATGA-TCTTCATTCATTTT-GTGATTAGGCACTATA-A
* * * * * * * * ** * * * * ** *
24166 ACCCATT-TCCTTCATTAGGATACATAACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTC
673 ACACATTCT-TTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* ** * * ** * * * * ** *
24230 CCACCGT-TTTT-GTTAGAATCAATGTT--TGCCTCTTAAATAAGACAAACATGAATAGTCAT-A
737 GC-CC-TATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACAATCATCAATTCTCGTAA
* * * * * ** * * *
24290 CTAATCCCCATTATTTTC-AGCATTGGGCACCATA-AACATAGTCAAC-TCATTAGGATAGATGA
798 C-AGTCTCCATTCTTTTCAAG-ATTGGGAACTA-AGAACCCATTC-CCTTCATTAGGATACATGA
* * * * *** ** * *
24352 AATTGATGCTTTGGAT-TCGCAAG-AATGGATTT-GTT-CACTCCAATTT-CCACAATGTCTAAG
859 CATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTCCAC-CGTTTTTGTTAGAA--TCAAAG
* * *
24412 TTCATGCCTC--AAATGAGACAAACTTGGAT--TC
920 TT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* ** ** * * ** *
24443 TAGTA-AAGATCATCATTCGTTTTGTG-ATTAGGCACAATAAACACT-TTCTGCTCTTTAGGATA
1 -A-TACTA-ATCCCCATTC-TTTTCAGCATTAGGCACCATAAACA-TAGTCAACTCATTAGGATA
* * * * *** * * ** * ** * *
24505 AATGATATTGATGATTTTCTTTTGCGTGAA-AAT-CATTTCTTTGC-CCTATTTTCCCTAAAATA
61 GACGAAATTGATG-CTTTGGATT-CG-CAAGAATGGATTTCTTCACTCC-AATTTCTGTAAAGTC
* ** * * * * *** * * * * **
24567 AAAGTTTATCCCT-TAATTATGACAATCATCAATTCTCGTAA-CAGTCTCCATT-TTTTTCAAGA
122 TAAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGA
* * * * ** * * * * ** * * **
24629 ATGGGAACTA-AGAACCCATTCCCTTCATTAGGATACAA-CACATTGATGCTTTGGTGTCGCAAG
184 TTAGGCACTATA-AACACATTCTTTTCGTTAGGATA-AATGATATTGATGATTTTCTTTTGCGTG
* *** * ** * ** * * * *
24692 AAAAGGTTTTCTTTCCACCGT-TTTT-GTTAGAATCAAAGCTGC--CCCTTAAATAAGACAAACA
247 GAAATCATTTCTTTGC-CC-TATTTTCCCTAAAAT-AAAAATTCATCCCTTAATTATGACAATCA
** * * * * * * ** * *
24753 -CAAATAGTCGT-GCTAATC-CCAAATCTTTTCAGGATTAGGCACCGT-A-AACGTAATCAAC-T
309 TC-AATTCTCGTAAC-AGTCTCC-ATTCTTTTCAAGATT-GGGAAC-TAAGAACCCATTC-CCTT
* ** * * * * * * *
24812 CATTAGGATAGACAAAATTGATGCTTTGGAT-TCGAAAGAATA-GATTTC-TTCACTCCAATTTC
368 CATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACC-GTTTT
* * * * * * **
24874 TG-TA-AAGTCTAAGTTCGTG-CT-TCAAATGAGACAAACAAGGAT--TC-TAGTAATGAACTTC
430 TGTTAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTCATACTAAT---CCCC
* * * * ** *** * * * * *
24932 ATTCATTTT--GTTATTACGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGAT
489 ATTC-TTTTCAG-CATTAGGCACCATAAACATAGCCAACTCATTAGGATAGACGAAATTGATGCT
*** ** * * * * * ** * * *
24995 TTTCTTTTTCATGGAAAT-CATTTCTTTGC-CT-TATTTTCCT-TAAAATAAAAATCCAT-CTCT
552 TTGGATTCGCA-AG-AATGGATTTC-TT-CACTCCAATTT-CTATAAAGTCTAAGTTCGTGC-CT
* * ** * ** * * *** * *
25055 TAATTTTGACAATCATCGATTCTCA-TAA-CAGTCTCCATTC-TTGTCAAGATTGGGAACTA-AG
611 CAAATGAGACAAACAAGGATTCT-AGTAATGA-TCTTCATTCATT-TTGTGATTAGGCACTATA-
* * * * * ** * * * * **
25116 AACCCATT-TCCTTCATTAGGATACATGATATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTT
672 AACACATTCT-TTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* *** * * ** * * * **
25180 T-CCATCATTTTTGTTAGATTCAAAGTTTC-TCTCCTAAATAAGTGA-AA-CATGAATAGTC--A
736 TGCCCT-ATTTTCCCTAAAAT-AAAAATTCATC-CCTTAATTA-TGACAATCATCAATTCTCGTA
* * * * * * * * *
25239 GACTAATCCCCATTCTTTTC-TGCATTAGGCACCATA-AA--CATTGTCAAC-TCATTAGGACAA
797 -AC-AGTCTCCATTCTTTTCAAG-ATTGGGAACTA-AGAACCCA-T-TC-CCTTCATTAGGATAC
* * * *
25299 ATGAAATTGATGCTTTGGAT-TCGCAAG-AATGGATTTCTTCTCC-CCATTTTCTG-TA-AAGTC
855 ATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTT-TCCACCGTTTT-TGTTAGAA-TC
* * * * *
25359 TAAGTTCGTGCCTC--AAATGAGACAAATAAGGAT--TC
916 AAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* ** * * * * ** * * *
25394 AAGTAAC-GATCTTCATTCATTTT--GTAATT-GCGCACTATAAACAGA-TTATTTTTATTTGAA
1 -A-T-ACTAATCCCCATTC-TTTTCAG-CATTAG-GCACCATAAACATAGTCA-ACTCATTAGGA
* * * * *** * * ** * **
25454 TAAATGATATTGATGATTTTCTTTTGCGTGAA-AAT-CATTTCTTTGC-CCTATTTTCCCTAAAA
59 TAGACGAAATTGATG-CTTTGGATT-CG-CAAGAATGGATTTCTTCACTCC-AATTTCTGT-AAA
* ** * * * * * * *** * *
25516 ATAAAAATTCATCCCT-TAATTATGACAATCATCAATTCTCA-TAA-CAGTCTCCATTC-TTTTC
119 GTCTAAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCT-AGTAATGA-TCTTCATTCATTTT-
** * * * ** * * * ** * *
25577 AAGATTGGGAACTA-AGAACCCATTCCCTTCATTAGGATAAGTGATATTGATGCTTTGGTGTCGC
180 GTGATTAGGCACTATA-AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGC
**** *** * ** * * * * * **
25641 AACAAAAGGTTTTCTTTCCACCGT-TTTT-GTTAGAATCAAAGTT--TCCCTCTTAAATAAGTTA
244 GTGGAAATCATTTCTTTGC-CC-TATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACA
* * ** ** ** * * * * * * ** ***
25702 AACATGAATAGTTATATTAATCTCTATTCTTTGCAAGATTAGGCACCATA-AACGTAGTGAGC-T
305 ATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTA-AGAACCCA-TTCCCTT
* * * * * * * *
25765 CATTAGGATAGACGAAATTGAAGCCTTGGAT-TCGCAAG-AATGGATTTC-TT-CACTCTAATTT
368 CATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTCCAC-C--GTTT
* * * * * * * * **
25826 TTG-TA-ATGTCTAAGTTCATG-CT-TCAAATGAGACAAATAAGAAT--TCTAGTAATGATCTTC
429 TTGTTAGA-ATCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATCCCC
** * * * ** *** ** * *
25885 ATTCATTTTGTG-ATTACGTACTATAAACACT-TTCTTTTCATTAGGATA-AATAATATTAATGA
489 ATTC-TTTTCAGCATTAGGCACCATAAACA-TAGCCAACTCATTAGGATAGACGAA-ATTGATGC
*** ** * * * * * ** * * *
25947 TTTTCTTTTTCATGGAAAT-CATTTCATTGC-C-CTATTTTCCT-TAAAATAAAAATTCATCCCT
551 TTTGGATTCGCA-AG-AATGGATTTC-TT-CACTCCAATTT-CTATAAAGTCTAAGTTCGTGCCT
* * * * ** * * ** *
26008 -TAGTTATGACAATCATCGATTCTCGTAA-GAGTCTCCATTC-TTTTCAAGATT-GGAAACTA-A
611 CAAATGA-GACAAACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGATTAGG-CACTATA
* * ** * * * ** * * * * ***
26068 GAACCCTTTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTT
672 -AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* ** * * ** * * * * * * ** *
26133 TCCACCGT-TTTT-ATTAGATTCAAAGTTTC-TCTCATAAATAAGACAAACATTAATAGTCAT-A
736 TGC-CC-TATTTTCCCTAAAAT-AAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAA
* * * * ** * * * *
26194 CTAATCCCCATTCTTTTC-AGCATTAGGCACCATAAGCATAGACA---AC-TCAATAGGATAGAC
798 C-AGTCTCCATTCTTTTCAAG-ATT-GGGAAC-TAAG-A-ACCCATTCCCTTCATTAGGATACAT
* * * * * * * * *
26254 GAAATTGATGCTTTGGAT-TTGCAA-CAATGGATTTC-TTCACTCCAATTTCTG-TA-AAGTCTA
857 GACATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACC-GTTTTTGTTAGAA-TCAA
* * * * *
26314 AGTTCGTG-CT-TCAAATGAGACAAATAAGGAT--TC
918 AGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC
* * ** ** * * * * * * *** * *
26347 TAGTAATGATCTTCATTCATTTTGTG-ATTACGTACTATAAATACATTCTTTTCGTTAGGATAAA
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGA
* * *** * ** * ** * * **
26411 TGAAATTGATGATTTTCTTTTGCGTGGAAAT-CATTTCTTTGC-CCTATTTTCCT-TAAAATAAA
63 CGAAATTGATGCTTTGGATTCGC-AAG-AATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCTA
* * * * * * * * ** * **
26473 AATCCATCCCT-TAATTATGATAATCATCGATTCTCA-TAACTG-TCTCCATTC-TTTTAAAGAT
124 AGTTCGTGCCTCAAATGA-GACAAACAAGGATTCT-AGTAA-TGATCTTCATTCATTTT-GTGAT
* * * ** * * * * ** * **
26534 TGGGAACTA-AGAACCCATTCCCTTCGTTAGGATACATGGCT-TGGATGCTTTGGTGTCT-CAAG
185 TAGGCACTATA-AACACATTCTTTTCGTTAGGATAAAT-GATATTGATGATTTTCT-TTTGCGTG
* *** * *** * * * * *
26596 AAAAGGTTTTCTTT-CCACCATTTTTGTTAGAATCAAAGTT--TGCCTCTTGAA-TAAGACAAAC
247 GAAATCATTTCTTTGCC-CTATTTTCCCTAAAATAAAAATTCAT-CC-CTT-AATTATGACAATC
* ** * * * * * * *
26657 ATTAATAATCAT-ACTAATCCCCATTCTTTTC-AGCATTAGGCACCATA-AA--CATAGCCAAC-
308 ATCAATTCTCGTAAC-AGTCTCCATTCTTTTCAAG-ATTGGGAACTA-AGAACCCAT-TCC--CT
* * * * * * * * *
26716 TCAATAGGATAGAAGAAATTGATGCTTTGGAT-TTG-AA-ACAATGGATTTC-TTCACTCCAATT
367 TCATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGA-AAAGGTTTTCTTTC-CACC-GTT
* * * * * * * * **
26777 TTTG-TA-AAGTCTACGTTCGTG-CT-TCAAATGAGACAAACAAGGAT--TCTAGTAATGATCTT
428 TTTGTTAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATCCC
** * *** * * ** *** * * * * *
26836 CATTCATTTTGTG-AGTACATACTATAAACACATTCTTTTCGTTAGGATAAAGGATATTGATGAT
488 CATTC-TTTTCAGCATTAGGCACCATAAACATAGCCAACTCATTAGGATAGACGAAATTGATGCT
*** ** * * * * * ** * * *
26900 TTTCTTTTTCATGGAAAT-CATTTCTCTGC-CT-TATTTTCCT-TAAAATAAAAATTCATCCCT-
552 TTGGATTCGCA-AG-AATGGATTTCT-T-CACTCCAATTT-CTATAAAGTCTAAGTTCGTGCCTC
** * * ** * * * ** * *
26960 TTATTATGACAATCATCGATTCTGGTAA-CAGTCTCCATTC-TTTTCAAGATTGGGAACTA-AGA
612 AAATGA-GACAAACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGATTAGGCACTATA-A
* ** * * * * ** * * * * *
27022 ACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGC-TTTCTTT
673 ACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA-TCATTTCTTT
* *** * * * * * * ** *
27086 -CCACTGTTTTTGATAGAATCAAAGTT--TGCCTCTTAAATAAGACAAACA-CGAATAGTCGT-G
737 GCC-CTATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACAATCATC-AATTCTCGTAA
* * ** * * * ** * * * *
27146 CTAATC-CCTAATCTTTTCTGGATTAGGCACCATA-AACATAGTCAAC-TCATTAGGATAGACGA
798 C-AGTCTCC-ATTCTTTTCAAGATTGGGAACTA-AGAACCCATTC-CCTTCATTAGGATACATGA
* * * * * * *
27208 AATTAATGCTTTGGAT-TCGCAAG-AATGGATTTC-TTCACTCCAATTTTTG-TA-AAGTCTAAG
859 CATTGATGCTTTGG-TGTCGCAAGAAAAGGTTTTCTTTC-CACC-GTTTTTGTTAGAA-TCAAAG
* ** * * * *
27268 TTCGTGT-TTCAAATGAGACAAAGAAGGAT--TC
920 TTTGCCTCTT-AAATAAGACAAACATGAATAGTC
* * ** ** * * * * * * *** * *
27299 TAGTAATGATCTTCATTCATTTTGTG-AGTACGTACTATAAACACATTCTTTTCGTTAGGATAAA
1 -A-TACTAATCCCCATTC-TTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGA
* * * *** ** * * * * * **
27363 GGATATTGATGATTTTCTTTTTCATGGAAAT-CATTTCTTTGC-CT-TATTTTCCT-TAAAATAA
63 CGAAATTGATGCTTTGGATTCGCA-AG-AATGGATTTC-TT-CACTCCAATTT-CTGTAAAGTCT
* * * ** * * ** * * * **
27424 AAATTCATCCCT-TTATTATGACAATCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTCAAGAT
123 AAGTTCGTGCCTCAAATGA-GACAAACAAGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGAT
* * * ** * * * * ** * * ** *
27486 TGGGAACTA-AGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
185 TAGGCACTATA-AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGA
*** * ** * * * * * *
27550 AAGGTTTTCTTTCCACCGT-TTTT-GTTAGAATCAAAGTT--TGCCTCTTAAATAAGACAAACA-
249 AATCATTTCTTTGC-CC-TATTTTCCCTAAAATAAAAATTCAT-CC-CTTAATTATGACAATCAT
** * * * * * * * ** * *
27610 CGAATAGTCGT-GCTAATC-CCTAATCTTTTCAGGATTTGGCACCATA-AACATAGTCAAC-TCA
310 C-AATTCTCGTAAC-AGTCTCC-ATTCTTTTCAAGATTGGGAACTA-AGAACCCATTC-CCTTCA
* * * * * * *
27671 TTAGGATAGACGAAATTGATGCTTTGCAT-TCGCAAG-AATGGATTTC-TT-CACTTCAATTTTT
370 TTAGGATACATGACATTGATGCTTTG-GTGTCGCAAGAAAAGGTTTTCTTTCCAC--C-GTTTTT
* * ** * * * **
27732 G-TA-AAGTCTATGTTTGTGCCTC--AACCAAGACAAACAAGGAT--TC-TAGTAATGGTCTTCA
431 GTTAGAA-TCAAAG-TT-TGCCTCTTAAATAAGACAAACATGAATAGTCATACTAA---TCCCCA
** * * * * ** * * * * * * *
27790 TTCATTTTGTG-ATTACGCACTATAAATACATTC-TCTTCGTTAGGATAAATGATATTGACGATT
490 TTC-TTTTCAGCATTAGGCACCATAAACATAGCCAAC-TCATTAGGATAGACGAAATTGATGCTT
** * * * ** * ** * ** * * * *
27853 T-TCTTCTACATGGAAAT-CATTTCTTTTC-CCTATTTTCCCTAAAATAAAAATTCATCCCT-TA
553 TGGATTC-GCA-AG-AATGGATTTCTTCACTCC-AATTTCTATAAAGTCTAAGTTCGTGCCTCAA
* * *** * * * ** * * *
27914 ATTATGACAATCATCAATTATCA-TAA-CAGTCTCCATTC-TTTTCAAGATTGGGAAC-AAAGAA
614 ATGA-GACAAACAAGGATTCT-AGTAATGA-TCTTCATTCATTTT-GTGATTAGGCACTATA-AA
* ** * ** * * *
27975 CCCATTCCCTTCATTAGGATACCTAATATTTGCCTGATTTTCTTTTTCATGGAAATCATTTCTTT
674 CACATTCTTTTCGTTAGGATAAATGATA-TTG-ATGATTTTCTTTTGCATGGAAATCATTTCTTT
* * * *
28040 GCCTTATTTTCCTTAAAATAAAAATTCATCCCTTTATTATGACAATCATCGATTCTCGTAACAGT
737 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
28105 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
802 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* * *
28170 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTCTGTTAGAATCAAAATTTGCCTCTTAA
867 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
28235 ATAAGACAAACATGAATAGTC
932 ATAAGACAAACATGAATAGTC
* *
28256 ATACTAATCCCCATTCCTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGATGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
28321 AATTAATGCTTTGGATTCGCAAGAATGGATTACTTCACTCCAATTTTTGTAAAGTCTAAGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* * *
28386 GCTTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGTACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
** * * *
28451 AACACATTCTCCTCTTTAGGATAAATGATATTTATGATTTTCTTTTGCATGGAAATCATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* *
28516 GCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAATTATGACAATCATCGATTCTCGTAACAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * *
28581 CTCCATTCTTTTCAAGATTGGGAATTAAGAACCCATTCCCTACATTAGGATACATGATATTGATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
28646 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTTGCCACATAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
28711 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTGGGCACCATAAACATAG
456 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAG
* * * *
28776 TCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTTGTAAGAATGGATTTCTTCACTCCAAT
521 CCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAAT
* * **
28841 TTCTATAAAGTCTAAGTTCGT-ACTACGAATGAGACAAACAAGGATTCTAGGGATGATCTTCATT
586 TTCTATAAAGTCTAAGTTCGTGCCT-CAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATT
* * *
28905 CATTTTGTAATTAGGCACTATAAACACATTCTTTTCGTTTGGATAAATGATACTGATGATTTTCT
650 CATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCT
** *
28970 TTTGTGTGGAAATCATTTCTTTGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
715 TTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
** *
29035 AATCATCAATTCTAATAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCTC-TC
780 AATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTC
* * *
29099 TATTAGGATA-AGTGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCATTTTTG
845 -ATTAGGATACA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTG
* **
29163 TTAGAATCAAAGTTTGCCTCTTAAATAAGGCAAACACAAATAGTC
908 TTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* ** * * *
29208 ATACTAATTCAAAATCTTTTCAGGATTAGGCACCATAAACATAGTCAACTCATTAGGATAGAGGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* ** *
29273 AATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTTTGTACGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* *
29338 GCTTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTAT-
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *
29402 AATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* * *
29467 GCCCTATTTTCCGTAAAATAAAAATTTATCCCTTAACTATGACAATCATCAATTCTCGTAACAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * * *
29532 CTTCATTCTTTTCCAGATTGAGAACTAAGAACCCATTCCCTTCATTAGGATACAAGACATTTATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* * *
29597 TTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA-C--TGTT-ATAGAATCAAAGTTTGCCTCTTAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
*
29658 ATAAGACAAACATGAATAGTCATAATAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAG
456 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAG
* *
29723 TCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAAT
521 CCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAAT
* * * * * *
29788 TTCTGTAAAGTCTAAGTTCGTACTTCGAATAAGACAAACAAGGATTCTACG-GATGATCTTCATT
586 TTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTA-GTAATGATCTTCATT
* * * *
29852 CATTTTGTAATTAGGCACTATAAACACATTCTTTTCGTT-GGATAAATAATACTAATGATTTTCT
650 CATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCT
* * **
29916 TTTGCGTGGAAATCATTTCCTTGCCAGATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
715 TTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGAC
** * * *
29981 AATCATCAATTCTAATAACAGTCTCCATTCTTTTCAAGACTGGGAACTAAGAATCAATTCCCTTC
780 AATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTC
* *
30046 ATTAGGATA-AGTGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTTTTGT
845 ATTAGGATACA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGT
* *
30110 TAGAATCAAAGTTTGCCTCTTAAATAAGGCAAACACGAATAGTC
909 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
* * * * *
30154 ATACTAATTCCTAATCTTTTCGGTATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
30219 AATTAATGCTTTGGATTCGTAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTATGTTCGT
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
* *
30284 GCTTCAAATGAGACAAACAA-GATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATA
131 GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
30348 AATACATTCTTTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCGTGGAAAACATTTCTTT
196 AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
* * * *
30413 GCCCTATTTTCCTTAAAATAAAAATTAATCCCTTAATTATGACAATCATCGAGTCTCGTAACAGT
261 GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
* * * *
30478 CTTCATTCTTTTCCAGATTGGGAACTAAGAACCCATTCCCTTCTTTAGGATACATGATATTGATG
326 CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
* *
30543 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGTTAGAATCAAAGTTTCCCTCTTAA
391 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
* *
30608 ATAAGTCAAACATTAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAG
456 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAG
* * *
30673 CCAACTCAATAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACCCCAAT
521 CCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAAT
* * * * * * * *
30738 TTTTTTTAAGGCTAAGTTCGTGCTTCAAAGGAGACAAACAGGGATTCTAGTAAAGATCTTCATTC
586 TTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTC
* * * * * *
30803 ATTTTGAGATTAAGTACTATAAACATATTCTTTTCGCTAAGATAAATGATA-T--TGA-------
651 ATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTT
*
30858 ---C---G-----A--T-TTT---CT-TTTT--C----AT-AAAATTCATCCCTTAATTATGATA
716 TTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACA
* *** * * * *
30898 ATCATCGATTCTCGTATTTGTCTCCATTCTTTTCATGATTGGGAGCTAAGAACCCATTTCTTTCA
781 ATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCA
* * * * *
30963 TTAGGATAAATGATACTGATGCTTTAGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTTTTTGTTA
846 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTA
* * * * *
31028 GAATCAAAGTTT-CTCTCCTAATTATGTCAAACATGAATAGTA
911 GAATCAAAGTTTGC-CTCTTAAATAAGACAAACATGAATAGTC
* * * *
31070 AAACTAATCCCCATTCTTTTTAGCATTAGGCACCATAAACATTA-TCAACTCATTAGTATAGATG
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACA-TAGTCAACTCATTAGGATAGACG
* * *
31134 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTATAAAGTCTAAGTTCA
65 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
*
31199 TGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTAT
130 TGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
31264 AAACACAATATTTTCGTTTGGATAAATGATACTAATGATTTCCGTTTGCGTGGAAATCATTTCTT
195 AAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
* **
31329 TGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTAATAACAG
260 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
*
31394 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGATATTGA
325 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGACATTGA
* * *
31458 TGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTTTTGTTAGAATGAAAGTTTGCCTCTT
389 TGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTT
* * * * *
31523 AAATAAGACAAACACGAATAGTCATACTAATTCCTAATCTTTTCAGGATTAGGCACCATAAACAT
454 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACAT
* * * *
31588 AGTCAACTCATTAGAATAGATGAAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCA
519 AGCCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCA
* * *
31653 ATTTCTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCAT
584 ATTTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCAT
* * * *
31718 TTATTTTGTGATTAGGCACTATAAATACATTCTTTTCATTAGGATAAATGATATTGGTGATTTTC
649 TCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTC
* *
31783 TTTTGCGTGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCTCTTAATTATGA
714 TTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGA
* ***
31848 CAATCATCAATTCTCGTAACAGTCTTCATTCTTTTCAAGATAAAGAACTAAGAACCCATTCCCTT
779 CAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTT
* * * *
31913 CATTAGGATACAAGACATTTATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCTACCG---TT-A
844 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGT
31974 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
909 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
*
32018 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCAATAGGATAGACGA
1 ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
* * *
32083 AATTGATGCTTTGGATTAGCAAGAATGGATTTC-TCTACTCCATTTTCTGTAAAGTCTAAGTTTG
66 AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC-ACTCCAATTTCTGTAAAGTCTAAGTTCG
* * *
32147 TGCCGCAAAAGAGACAAATAAGGATTCTA
130 TGCCTCAAATGAGACAAACAAGGATTCTA
32176 ATAACAGTCT
Statistics
Matches: 13959, Mismatches: 1861, Indels: 902
0.83 0.11 0.05
Matches are distributed among these distances:
915 1 0.00
916 300 0.02
917 500 0.04
918 1 0.00
920 3 0.00
921 1 0.00
923 4 0.00
927 2 0.00
928 1 0.00
930 2 0.00
933 1 0.00
935 1 0.00
938 2 0.00
940 222 0.02
941 170 0.01
942 8 0.00
943 475 0.03
944 207 0.01
945 382 0.03
946 1239 0.09
947 1210 0.09
948 206 0.01
949 731 0.05
950 646 0.05
951 1428 0.10
952 4035 0.29
953 1461 0.10
954 477 0.03
955 204 0.01
956 24 0.00
957 8 0.00
958 5 0.00
959 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (952 bp):
ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACGA
AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCGT
GCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
AACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTTT
GCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGT
CTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAA
ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAG
CCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAAT
TTCTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTC
ATTTTGTGATTAGGCACTATAAACACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTT
TTGCATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACA
ATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCA
TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTA
GAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
Found at i:23622 original size:318 final size:310
Alignment explanation
Indices: 23074--23712 Score: 920
Period size: 318 Copynumber: 2.0 Consensus size: 310
23064 AATAGCCAAC
* *
23074 TCATTAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAATGGATTTGTTCACTCCAATTTCTA
1 TCATTAGGATAGATGAAATTGATGCTTTGGATTCGCAAAAATGGATTTCTTCACTCCAATTTCTA
* * * * * * *
23139 CAATGTCTATGTTCATGCCTTAAATGAGACAATGTCCAAGAATGGATTTGTTCATTTTGTGATTA
66 CAAAGTCTAAGTTCATGCCTCAAAAGAAACAAGGTCCAAGAATGGATTTATTCATTTTGTGATTA
* *
23204 GGCACAACAAACACTTTCTACCCTTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAAT
131 GGCACAACAAACACTTTCTACCCGTTAGGATAAATGATATTGATGATTTTCTTTGGCGTGGAAAT
* *
23269 CATTTCTTTGCCCTACTTTCCCTAAAATAAAAATTCATCCCTAAATTATAACAATCATCGATTCT
196 CATTTCTTTGCCCTACTTTCCCTAAAATAAAAATTCATCCCTAAATTATAACAATAATCAATTCT
*
23334 CGTAGCAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCT
261 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCT
* *
23384 TCATTAGGATAGATGAAATTGATGCTTTGGATTCGCAAAAATGGATTTCTTCACTCCAATTTTTG
1 TCATTAGGATAGATGAAATTGATGCTTTGGATTCGCAAAAATGGATTTCTTCACTCCAATTTCTA
* ** * *
23449 TAAAGTCTAAGTTTGTGCCTCAACTAAGACAAACAAGGATTCTAGTAAT-GATCTTCATTCATTT
66 CAAAGTCTAAGTTCATGCCTCAA--AAG--AAACAAGG-TCCAAG-AATGGAT-TT-ATTCATTT
* * * ***
23513 TGTGATTAGGCACTATAAACACATTTTTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTGG
123 TGTGATTAGGCACAACAAACAC-TTTCTACCCGTTAGGATAAATGATATTGATGATTTTCTTTGG
* * *
23578 CGTGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATA
187 CGTGGAAATCATTTCTTTGCCCTACTTTCCCTAAAATAAAAATTCATCCCTAAATTATAACAATA
23643 ATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCT
252 ATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCT
23702 TCATTAGGATA
1 TCATTAGGATA
23713 CAAGACTTTG
Statistics
Matches: 290, Mismatches: 30, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
310 78 0.27
312 2 0.01
314 6 0.02
315 7 0.02
316 5 0.02
317 27 0.09
318 165 0.57
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (310 bp):
TCATTAGGATAGATGAAATTGATGCTTTGGATTCGCAAAAATGGATTTCTTCACTCCAATTTCTA
CAAAGTCTAAGTTCATGCCTCAAAAGAAACAAGGTCCAAGAATGGATTTATTCATTTTGTGATTA
GGCACAACAAACACTTTCTACCCGTTAGGATAAATGATATTGATGATTTTCTTTGGCGTGGAAAT
CATTTCTTTGCCCTACTTTCCCTAAAATAAAAATTCATCCCTAAATTATAACAATAATCAATTCT
CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCT
Found at i:28050 original size:161 final size:161
Alignment explanation
Indices: 27849--28157 Score: 528
Period size: 161 Copynumber: 1.9 Consensus size: 161
27839 TGATATTGAC
*
27849 GATTTTCTTCTACATGGAAATCATTTCTTTTCCCTATTTTCCCTAAAATAAAAATTCATCCCTTA
1 GATTTTCTTCTACATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTA
27914 ATTATGACAATCATCAATTATCATAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACCCA
66 ATTATGACAATCATCAATTATCATAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACCCA
27979 TTCCCTTCATTAGGATACCTAATATTTGCCT
131 TTCCCTTCATTAGGATACCTAATATTTGCCT
* * * * *
28010 GATTTTCTTTTTCATGGAAATCATTTCTTTGCCTTATTTTCCTTAAAATAAAAATTCATCCCTTT
1 GATTTTCTTCTACATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTA
* * * *
28075 ATTATGACAATCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCA
66 ATTATGACAATCATCAATTATCATAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACCCA
28140 TTCCCTTCATTAGGATAC
131 TTCCCTTCATTAGGATAC
28158 ATGACATTGA
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
161 138 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (161 bp):
GATTTTCTTCTACATGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTA
ATTATGACAATCATCAATTATCATAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACCCA
TTCCCTTCATTAGGATACCTAATATTTGCCT
Found at i:31766 original size:476 final size:475
Alignment explanation
Indices: 30874--32175 Score: 1898
Period size: 476 Copynumber: 2.7 Consensus size: 475
30864 TCTTTTTCAT
* * *** *
30874 AAAATTCATCCCTTAATTATGATAATCATCGATTCTCGTATTTGTCTCCATTCTTTTCATGATTG
1 AAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
* * * * *
30939 GGAGCTAAGAACCCATTTCTTTCATTAGGATAAATGATACTGATGCTTTAGTGTCGCAAGAAAAG
66 GGAACTAAGAACCCATTCCCTTCATTAGGAT-AATGATATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * *
31004 GTTTTCTTTCCATCGTTTTTGTTAGAATCAAAGTTT-CTCTCCTAATTATGTCAAACATGAATAG
130 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC-CTCTTAAATAAGACAAACATGAATAG
* * * *
31068 TAAAACTAATCCCCATTCTTTTTAGCATTAGGCACCATAAACATTA-TCAACTCATTAGTATAGA
194 TCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACA-TAGTCAACTCATTAGAATAGA
*
31132 TGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTATAAAGTCTAAGTT
258 TGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTGTAAAGTCTAAGTT
* *
31197 CATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACT
323 CGTGCCTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTTGTAATTAGGCACT
* *
31262 ATAAACACAATATTTTCGTTTGGATAAATGATACTAATGATTTCCGTTTGCGTGGAAATCATTTC
388 ATAAACACAATATTTTCATTAGGATAAATGATACTAATGATTTCCGTTTGCGTGGAAATCATTTC
31327 TTTGCCATATTTTCCCTAAAATA
453 TTTGCCATATTTTCCCTAAAATA
**
31350 AAAATTCATCCCTTAATTATGACAATCATCAATTCTAATAACAGTCTCCATTCTTTTCAAGATTG
1 AAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
*
31415 GGAACTAAGAACCCATTCCCTTCATTAGGATAAGTGATATTGATGTTTTGGTGTCGCAAGAAAAG
66 GGAACTAAGAACCCATTCCCTTCATTAGGATAA-TGATATTGATGCTTTGGTGTCGCAAGAAAAG
* * *
31480 GTTTCCTTTCCACCGTTTTTGTTAGAATGAAAGTTTGCCTCTTAAATAAGACAAACACGAATAGT
130 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* * * *
31545 CATACTAATTCCTAATCTTTTCAGGATTAGGCACCATAAACATAGTCAACTCATTAGAATAGATG
195 CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGAATAGATG
* *
31610 AAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
260 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTGTAAAGTCTAAGTTCG
* * *
31675 TGCTTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCATTTATTTTGTGATTAGGCACTAT
325 TGCCTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTTGTAATTAGGCACTAT
* * * * ** * *
31740 AAATACATTCTTTTCATTAGGATAAATGATATTGGTGATTTTCTTTTGCGTGGAAATCATTTCTT
390 AAACACAATATTTTCATTAGGATAAATGATACTAATGATTTCCGTTTGCGTGGAAATCATTTCTT
*
31805 TGCCCTATTTTCCCTAAAATA
455 TGCCATATTTTCCCTAAAATA
* * **
31826 AAAATTCATCTCTTAATTATGACAATCATCAATTCTCGTAACAGTCTTCATTCTTTTCAAGATAA
1 AAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
* * * *
31891 AGAACTAAGAACCCATTCCCTTCATTAGGATACAAGACATTTATGCTTTGGTGTCGCAAGAAAAG
66 GGAACTAAGAACCCATTCCCTTCATTAGGATA-ATGATATTGATGCTTTGGTGTCGCAAGAAAAG
* *
31956 GTTTTCTTTCTACCG---TT-ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
130 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* * *
32017 CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCAATAGGATAGACG
195 CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGAATAGATG
* *
32082 AAATTGATGCTTTGGATTAGCAAGAATGGATTTC-TCTACTCCATTTTCTGTAAAGTCTAAGTTT
260 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC-ACTCCATTTTCTGTAAAGTCTAAGTTC
* * *
32146 GTGCCGCAAAAGAGACAAATAAGGATTCTA
324 GTGCCTCAAATGAGACAAACAAGGATTCTA
32176 ATAACAGTCT
Statistics
Matches: 741, Mismatches: 80, Indels: 14
0.89 0.10 0.02
Matches are distributed among these distances:
471 2 0.00
472 182 0.25
473 2 0.00
475 4 0.01
476 549 0.74
477 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (475 bp):
AAAATTCATCCCTTAATTATGACAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
GGAACTAAGAACCCATTCCCTTCATTAGGATAATGATATTGATGCTTTGGTGTCGCAAGAAAAGG
TTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTC
ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGAATAGATGA
AATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCATTTTCTGTAAAGTCTAAGTTCGT
GCCTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTTGTAATTAGGCACTATA
AACACAATATTTTCATTAGGATAAATGATACTAATGATTTCCGTTTGCGTGGAAATCATTTCTTT
GCCATATTTTCCCTAAAATA
Found at i:32449 original size:317 final size:313
Alignment explanation
Indices: 31864--32492 Score: 929
Period size: 317 Copynumber: 2.0 Consensus size: 313
31854 TCAATTCTCG
*
31864 TAACAGTCTTCATTCTTTTCAAGATAAAGAACTAAGAACCCATTCCCTTCATTAGGATACAAGAC
1 TAACAGTCTCCATTCTTTTCAAGATAAAGAACTAAGAACCCATTCCCTTCATTAGGATACAAGAC
* * *
31929 ATTTATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCTACCGTTATAGAATCAAAGTTTGCCTCT
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTATAGAATCAAAGTTTGCCTCT
* *
31994 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACA
131 TAAATAAGACAAACACGAATAGTCATACTAATCCCCAATCTTTTCAGCATTAGGCACCATAAACA
* *
32059 TAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTAGCAAGAATGGATTTCTCTACTCC
196 TAGTCAACTCAATAGAATAGACGAAATTAATGCTTTGGATTAGCAAGAATGGATTTCTCTACTCC
* * *
32124 ATTTTCTGTAAAGTCTAAGTTTGTGCCGCAAAAGAGACAAATAAGGATTCTAA
261 AATTTCTGTAAAGTCTAAGTTCGTGCCGCAAAAGAGACAAACAAGGATTCTAA
*** *
32177 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGA
1 TAACAGTCTCCATTCTTTTCAAGATAAAGAACTAAGAACCCATTCCCTTCATTAGGATACA-AGA
* * * *
32241 TATTGATGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTTTTGTTAGAATGAAAGTTTG
65 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCG---TT-ATAGAATCAAAGTTTG
* * *
32306 CCTCTTAAATAAGACAAACACGAATAGTCATACTAATTCCTAATCTTTTCAGGATTAGGCACCAT
126 CCTCTTAAATAAGACAAACACGAATAGTCATACTAATCCCCAATCTTTTCAGCATTAGGCACCAT
* * *
32371 AAACATAGTCAACTCATTAGAATAGATGAAATTAATGCTTTGGATTCGCAAGAATGGATTTCT-T
191 AAACATAGTCAACTCAATAGAATAGACGAAATTAATGCTTTGGATTAGCAAGAATGGATTTCTCT
** * *
32435 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCGAACGAGACAAACAAGGATTCTA
256 -ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCGCAAAAGAGACAAACAAGGATTCTA
32493 GGAATGATCT
Statistics
Matches: 281, Mismatches: 29, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
312 1 0.00
313 95 0.34
316 3 0.01
317 182 0.65
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (313 bp):
TAACAGTCTCCATTCTTTTCAAGATAAAGAACTAAGAACCCATTCCCTTCATTAGGATACAAGAC
ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTATAGAATCAAAGTTTGCCTCT
TAAATAAGACAAACACGAATAGTCATACTAATCCCCAATCTTTTCAGCATTAGGCACCATAAACA
TAGTCAACTCAATAGAATAGACGAAATTAATGCTTTGGATTAGCAAGAATGGATTTCTCTACTCC
AATTTCTGTAAAGTCTAAGTTCGTGCCGCAAAAGAGACAAACAAGGATTCTAA
Found at i:32561 original size:317 final size:313
Alignment explanation
Indices: 31865--32563 Score: 877
Period size: 317 Copynumber: 2.2 Consensus size: 313
31855 CAATTCTCGT
* * * * * *
31865 AACAGTCTTCATTCTTTTCAAGATAAAGAACTAAGAACCCATTCCCTTCATTAGGATACAA-GAC
1 AACAGTCTCCATTCTTTTCAAGATTAAGAACTAAGAACACATTCCCTTCACTAAGATA-AATGAT
* * * *
31929 ATTTATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCTACCGTTATAGAATCAAAGTTTGCCTCT
65 ATTGATGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTATAGAATCAAAGTTTGCCTCT
* *
31994 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACA
130 TAAATAAGACAAACACGAATAGTCATACTAATCCCCAATCTTTTCAGCATTAGGCACCATAAACA
* *
32059 TAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTAGCAAGAATGGATTTCTCTACTCC
195 TAGTCAACTCAATAGAATAGACGAAATTAATGCTTTGGATTAGCAAGAATGGATTTCTCTACTCC
* * * *
32124 ATTTTCTGTAAAGTCTAAGTTTGTGCCGCAAAAGAGACAAATAAGGATTCTAAT
260 AATTTCTGTAAAGTCTAAGTTCGTGCCGCAAAAGAGACAAACAAGGATTCTAAG
** * * * *
32178 AACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATAAGTGATA
1 AACAGTCTCCATTCTTTTCAAGATTAAGAACTAAGAACACATTCCCTTCACTAAGATAAATGATA
* *
32243 TTGATGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTTTTGTTAGAATGAAAGTTTGCC
66 TTGATGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCG---TT-ATAGAATCAAAGTTTGCC
* * *
32308 TCTTAAATAAGACAAACACGAATAGTCATACTAATTCCTAATCTTTTCAGGATTAGGCACCATAA
127 TCTTAAATAAGACAAACACGAATAGTCATACTAATCCCCAATCTTTTCAGCATTAGGCACCATAA
* * *
32373 ACATAGTCAACTCATTAGAATAGATGAAATTAATGCTTTGGATTCGCAAGAATGGATTTCT-TCA
192 ACATAGTCAACTCAATAGAATAGACGAAATTAATGCTTTGGATTAGCAAGAATGGATTTCTCT-A
** * * *
32437 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCGAACGAGACAAACAAGGATTCTAGG
256 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCCGCAAAAGAGACAAACAAGGATTCTAAG
* * * * * ** *
32495 AA-TGATCTTCATTCATTTT-GAGATTAAGTACTATA-AACATATTCTTTTCGCTAAGATAAATG
1 AACAG-TCTCCATTC-TTTTCAAGATTAAGAACTA-AGAACACATTCCCTTCACTAAGATAAATG
32557 ATATTGA
63 ATATTGA
32564 CGATTTTCTT
Statistics
Matches: 332, Mismatches: 45, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
312 1 0.00
313 94 0.28
316 4 0.01
317 228 0.69
318 5 0.02
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33
Consensus pattern (313 bp):
AACAGTCTCCATTCTTTTCAAGATTAAGAACTAAGAACACATTCCCTTCACTAAGATAAATGATA
TTGATGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTATAGAATCAAAGTTTGCCTCTT
AAATAAGACAAACACGAATAGTCATACTAATCCCCAATCTTTTCAGCATTAGGCACCATAAACAT
AGTCAACTCAATAGAATAGACGAAATTAATGCTTTGGATTAGCAAGAATGGATTTCTCTACTCCA
ATTTCTGTAAAGTCTAAGTTCGTGCCGCAAAAGAGACAAACAAGGATTCTAAG
Found at i:33574 original size:476 final size:476
Alignment explanation
Indices: 32177--39814 Score: 10657
Period size: 476 Copynumber: 16.1 Consensus size: 476
32167 AGGATTCTAA
32177 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGA
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGA
* * * *
32241 TATTGATGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTTTTGTTAGAATGAAAGTTTG
65 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * * *
32306 CCTCTTAAATAAGACAAACACGAATAGTCATACTAATTCCTAATCTTTTCAGGATTAGGCACCAT
130 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * * *
32371 AAACATAGTCAACTCATTAGAATAGATGAAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTC
195 AAACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
*
32436 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCGAACGAGACAAACAAGGATTCTAGGAATGAT
260 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGAT
* * * *
32501 CTTCATTCATTTTGAGATTAAGTACTATAAACATATTCTTTTCGCTAAGATAAATGATATTGACG
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACG
*
32566 ATTTTCTTTTTCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
390 ATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
32631 TTATGACAATCATCAATTCTCG
455 TTATGACAATCATCAATTCTCG
* *** *
32653 TAACAGTCTTCATTCTTTTCAAGATAAAGAACTAAGAACCCATTCCCTTCATTAGGATACAAGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* * *
32718 ATTTATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCTACCG---TT-ATAGAATCAAAGTTTGC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
32779 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
*
32844 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTTGCAAGAATGGATTTC-TCT
196 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC-
* * ** * * * *
32908 ACTCCATTTTCTGTAAAGTCTAAGTTTGTGCCGCAAAAGAGACAAATAAGGATTCTA-AAACGAT
260 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGAT
* *
32972 CTTCATTCATTTTGTGATTCGGCACTATAAACACATTCTTTTCG-TAAGGATAAATGATATTAAC
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAA-GATAAATGATATTGAC
** * * *
33036 GATTTTCTTTTGCATGGAAATCATTTCTTTGCCTTATTTTCCTTAAAATAAAAATCCATCCCTTA
389 GATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTA
* *
33101 ATTATGACAATTATCGATTCTCG
454 ATTATGACAATCATCAATTCTCG
* * * *
33124 TAACAGTCTCCGTTATTTTCAATATTGGGAACTAAGAACCCATTCCCTTAATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* * * * ** *
33189 GTTGATGCTTTGGGGTCACAAGAAAAGGTTTTCTTTCCACCGTTTATAATAGAATCAAAGTTTAC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
* *
33254 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGCGTTAGGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
* * *
33319 AACATAGTCAACTCATTAGGATAGACGGAATTGATGCTTTGGATTCGCAAGAATGGATTTCTGCA
196 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
* * * * *
33384 CTCCAATTTCTATAAAGCCTAAGTTCATGCTTCGAACGAGACAAACAAGGATTCTAGGGATGATC
261 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGATC
* * * *
33449 TTCATTCATTTTGAGATTAAGTACTATAAACATATTCTTTTCGCTAAGATAAATGATATTGACGA
326 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACGA
*
33514 TTTTCTTTTTCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAAT
391 TTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAAT
33579 TATGACAATCATCAATTCTCG
456 TATGACAATCATCAATTCTCG
* * * *
33600 TAACAGTCTTCATTCTTTTCGAGATTGAGAACTAAGAACCCATTCCCTTCATTAGGATACAAGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* **
33665 ATTTATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCG----TAATAGAATCAAAGTTTGC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
33726 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
* *
33791 AACATAGTCAACTCAAAAGGATAGACGAAATTGATGCTTTGGATTCGCAACAATGGATTTCTTCA
196 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
* * *
33856 CTCTAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACAAACAAGGATTCTAGTAGAT-AT
261 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGA-ATGAT
* ** * **
33920 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCATTAGGATAAATGATATTGGTG
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACG
* ** *
33985 ATTTTCTTTTGCGTGGAAATCATTTCTTTGCCCTATTTTCCATAAAATAAAAATTCATCCCTTAA
390 ATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
* *
34050 TTATGACAATAATCAATTCTAG
455 TTATGACAATCATCAATTCTCG
* * *
34072 TAACAGTCTCAATTCTTCTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACAAGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* * * *
34137 ATTTATGCTTTGGTGTCGTAAGAAAAGGTTTTCTTTCTACCATTTTTGTTAGAATCAAAGTTTGC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
* * * *
34202 CTATTAAATAAGACAAACAAGAATAGTCATACTAATCCCCACTCTTTTCAGCATTAGGCACCACA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
* *
34267 AACATAGCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAAAGGATTTCTTCA
196 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
* * *
34332 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTC-AACTAAGACAAACAAGGATTCTAGTAATGAT
261 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAAC-GAGACAAACAAGGATTCTAGGAATGAT
* * * * *
34396 CTTCATTTATTTTGTGATTAGGCACTATAAATAAATTCTTTTC-CTTATGATAAATGATATTGAT
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGC-TAAGATAAATGATATTGAC
* *
34460 GATTTTCTTTTGCA-AGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTTATCCCTT
389 GATTTTCTTTTGCATA-AAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTT
*
34524 AATTATAACAATCATCAATTCTCG
453 AATTATGACAATCATCAATTCTCG
*
34548 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACAAGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* * *
34613 ATTTATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
*
34678 CACTTAAATAAGACAAACATGAATAGGT-ATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
131 CTCTTAAATAAGACAAACATGAATA-GTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * *
34742 AAACATAGTCAACTCAAAAGGATAGACGAAATTGACGCTTTGGATTCGTAAGAATGGATTTCTTC
195 AAACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * * *
34807 ACTCTAATTTCTGTAAAGCCTAAGTTCGTACTTCGAACGAGACAAACAAGGATTCTAGGAATGAT
260 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGAT
* * *
34872 CTTCATTCATTTTGTGATTAAGTACTATAAACATATTCTTTTCGCTAAGATAAATGATATTGACG
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACG
* *
34937 ATTTTCTTTTTCATAAAAATCATTTCTTTGCCCTATTTTCCGTAAAATAAAAATTCATCCCTTAA
390 ATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
* *
35002 TTATGATAATCATCGATTCTCG
455 TTATGACAATCATCAATTCTCG
* * * *
35024 T-ACTTGTCTCCATTCTTTTCATGATTGGGAGA-TAGGAACCCAATT-CCTTCATTAGGATAAAT
1 TAAC-AGTCTCCATTCTTTTCAAGATTGGGA-ACTAAGAACCC-ATTCCCTTCATTAGGATACAT
* * * * **
35086 GATACTGATGCTTTAGTGTCGCAAGAAAAGATTTTCTTTCCTTCGTTTTTGTTAGAATCAAAGTT
63 GACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTT
* * * * * * *
35151 T-CTCGCCTAATTATGTCAAACATGAATAGTAATACTAATCCCCATTCTTTTTAGCATTAGGCAC
128 TGC-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCAC
* * * *
35215 CATAAACATTA-TCAACTCATTAGTATAGATGAAATTGATGCTTTGGATTTGCAAGAATGGATTT
192 CATAAACA-TAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTT
* * * * * *
35279 CTTCACTCCATTTTCTATAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAA
256 CTTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAA
** * * ** *
35344 CCATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTTTCGTTTGGATAAATGATACT
321 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATT
* * * ** * * **
35409 AATGATTTTCTTTTGCGTGGATATCATTTCTTTGCCATATTTTCCCTAAAA-AAAAATTTGTCCC
386 GACGATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCC
* **
35473 TTAATTATGACAATCACCAATTCTAA
451 TTAATTATGACAATCATCAATTCTCG
35499 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGA
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGA
* * *
35563 TATTGATGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
65 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
** * * * *
35628 CCTCTTAAATAAGACAAACGCGAATAGTCATACTAATTCCTAATCTTTTCAGGATTAGGCACCAT
130 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * * *
35693 AAACATAGTCAACTCATTAGAATAGACGAAATTAATGCTTTGGATTCGCAAGAATGGATTTCTGC
195 AAACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * *
35758 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACAAACAAGGATTCTAGTAAAGAT
260 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGAT
* * * * * **
35823 CTTCATTCATTTTGTGATTAGGCAGTATAAATACATTCTTTTTGTTAGGATAAATGATATTGGTG
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACG
* * *
35888 ATTTTCTTTTGCGTGGAAAA-CATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCACTTA
390 ATTTTCTTTTGCAT-AAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTA
* *
35952 ATTATGACAATAATCAATTCTAG
454 ATTATGACAATCATCAATTCTCG
* * * *
35975 TAAGAGTCTCCATTCTTCTCAAGATTGGGAATTAAGAACCCACTCCCTTCATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* * * *
36040 ATGGATGCTTTGGTATCGCAAGAAAAGGTTTTCTTTCCACCGGTTTTGTTAGAATCAAATTTTGC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
* * *
36105 CTATTAAATAAGACAAACAAGAATAGTCATACTAATCCCCACTCTTTTCAGCATTAGGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
*
36170 AACATAGCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
196 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
* * *
36235 CTCCAATTTCTGTAAAGGCTAAGTTCGTGCTTCAAAGGAGACAAACAAGGATTCTAGTAATGATC
261 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGATC
* ** * * *
36300 TTCATTTATTTTGTGATTAGGCACTATAAATGCATTCTTTTCGTTAGGATAAATGATATTGATGA
326 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACGA
* *
36365 TTTTCTTTTGCA-AGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTTATCCCTTAA
391 TTTTCTTTTGCATA-AAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
36429 TTATGACAATCATCAATTCTCG
455 TTATGACAATCATCAATTCTCG
* *
36451 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCAGTCCCTTCATTAGGATACAAGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* * * * *
36516 ATTTATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCAACATTTCTGATAGAATCAAAGTTTGC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
* * * *
36581 CACTTAAATAAGACAAACATGAATAGTCATACTAATCTCCATTCTTTTCAGCTTTTGGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
* *
36646 AACATAGTCAACTCAAAAGGATAGACGAAATTGATGCTTTGGATTCGCAAAAATGGATTTCTTCA
196 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
* * * *
36711 CTCCAATTTCTGTAAAGCCTAAGTTCATACTTCGAACGAGACAAACAAGGATTCTAGGAATGATC
261 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGATC
* * * *
36776 TTCATTCATTTTGTGATTAAGTACTATAAACATATTCTTTTCGCTAAGATAAATGATATTGGCGA
326 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACGA
* * *
36841 TTTTCTTTTTCTTAAAAATCATTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAT
391 TTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAAT
* * * *
36906 TATTATAATTATCGATTCTCG
456 TATGACAATCATCAATTCTCG
*** * * * * * *
36927 TATTTGTCTCAATTCTTTTCATGATTGGGAGCTAAGAACCCATTTCCTTCATTAGGATAAATGAT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* * * *
36992 ACTGATGCTTTAGG-GTCGCAAGAAAAGGTTTTCCTTCCATCATTTTTGTTAGAATCAAAGTTTG
66 ATTGATGCTTT-GGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * *
37056 CCTATTAAATACGACAAACAAGAATAGTCATACTAATCCCCATTCCTTTCAGCATTAGGCACCAT
130 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* *
37121 AAACATAGCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTG
195 AAACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* *
37186 ACTCCAATTTCTGTAAAGCCTAAGTTCGTGCTTCGAACGAGACAAACAAGGATTCTAGGAATGAT
260 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGAT
* * *
37251 CTTCATTCATTTTGTGATTAAGTACTATAAACATATTCTTTTCGCTAAGATAAATGATATTGACG
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACG
* *
37316 ATTTTCTTTTTCATAAAAATCATTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAA
390 ATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
* * *
37381 TTATGATAATCATCGATTCTTG
455 TTATGACAATCATCAATTCTCG
* * * * ** *
37403 T-ACTTGTCTCCATTCATTTCATGATTGGGAGCTAAGAACCCATTTGTCTTCATTAGGATAAATG
1 TAAC-AGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCA-TTCCCTTCATTAGGATACATG
* * * * *
37467 ATACTGATGCTTTAGTGTCGCAAGAAATGGTTTTCTTTCCATCGTTTTTGTTAGAATCAAAGTTT
64 ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * * * * * *
37532 -CTCTCCTAATTATGTCAAACATTAATAGTCATATTAATCCCCATTCTTTTTAGCATTAGGCACC
129 GC-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACC
* * * *
37596 ATAAACATTA-TCAACTCATTAGCATAGATGAAATTGATGCTTTGGATTCGCAAGAATGGGTTTC
193 ATAAACA-TAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTC
* * * * *
37660 TTCACTCCATTTTCTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAAT
257 TTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAAT
* * * * * ** * *
37725 GATCTTCATTCATTTTGTAAATAGGCACAATAAACACATTCTTTTTGTTTGGATAAATGATACTA
322 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTG
* * **
37790 ATGATTTTCTTTTGCGTGGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCT
387 ACGATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCT
* *
37855 TAATTATGACAATAATCAATTCTAG
452 TAATTATGACAATCATCAATTCTCG
** * *
37880 TAACAGTCTCCATTCTTCGCAAGATTCGGAACTAAAAACCCATTCCCTTCATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* *
37945 ATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTTTTTGTTAGAATCAAAGTTTGC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
* * *
38010 CTATTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCCTTTCAGCATTAGGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
* *
38075 AACATAGCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTGA
196 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
* * *
38140 CTCCAATTTCTATAAAGCCTAAGTTCGTGCTTCGAACGAGACAAACAAGGATTCTAGGAATGATC
261 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGATC
* * *
38205 TTCATTCATTTTGTGATTAAGTACTATAAACATATTCTTTTCGCTAAGATAAATGATATTGACGA
326 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACGA
* * *
38270 TTTTGTTTTTCATAAAAATCATTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAT
391 TTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAAT
* *
38335 TATGATAATCATCGATTCTCG
456 TATGACAATCATCAATTCTCG
*** ** * * * * *
38356 TATTTGTCTCCATTCTTTTCTTGATTGGGAGCTAAGAACCCGTTTCCTTCATTAGGATAAATGAT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* * * * *
38421 ACTGATGATTTAGTGTCGCAAGATAAGGTTTTCTTTCCATCGTTTTTGTTAGAATCAAAGTTT-C
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
* * * * * * *
38485 TCTCCTAATTATGTCAAACATTAATAGTCATACTAATTCCCATTCTTTTCGGCATTAGGCACCAT
131 -CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * * * * *
38550 AAACATAGTCAACTCATTGGGATTGGCGAAATTGTTGCTTTGGATTCGCAAGAATGGGTTTCTTC
195 AAACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * * *
38615 ACTCCATTTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
260 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGAT
* * * ** * * *
38680 CTTCATTCATTTTGTAATTAGGCACTATAAATACATT-TTTTCGTTTGGATAAATGATACTAATG
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACG
* ** * *
38744 ATTTTCTTTTGCGTGGAAATCATTTCTTTACCATATTTTCCCTAAAATAAAAATTCATCCCTTAA
390 ATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
**
38809 TTATGACAATCATCAATTCTAA
455 TTATGACAATCATCAATTCTCG
38831 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGA
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TGA
* * * * *
38895 TATTCATGTTTTGGTGTCGCAAGAAAAGGTTTCCTTTCCACCATTTTTGTTAGAATCAAAGTTTG
65 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * *
38960 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATTCCTAATCTTTTCAGGATTAGGCACCAT
130 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * * * *
39025 AAACATAGTCAACTCATTAGAATAGACGAAATTAATGCTTTGGATTCACAAGAATGGATTTGTTC
195 AAACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * *
39090 ACTCCAATTTCTGTAAAGCCTAAGTTCATGCTTCGAACGAGACAAACAAGGATTCTAGGAATGAT
260 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGAT
* * *
39155 CTTCATTCATTTTGTGATTAAGTACTATAAACATATTCTTTTCGCTAAGATAAATGATATTGACG
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACG
* * * *
39220 ATTTTCTTTTTCCTAAAAATCATTTCTTTGCCGTATTTTCCTTAAAAT-AAAATTCATCCCTTAA
390 ATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
**
39284 TTATGACAATCATTGATTCTCG
455 TTATGACAATCATCAATTCTCG
* * * *
39306 CAATAGTCTCCATTCTTTTCATGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
* *
39371 ATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTCC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
* * * * *
39436 CTCTTAAATAAGTCAAACATGAATAGTCATATTAATCCCCATTCTTTTCTGGATTAGGCACAATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
* * * * *
39501 AACGTAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAAAGGATTTCTTCA
196 AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
* * *
39566 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTC-AACTAAGACAAACAAGGATTCTAGTAATGAT
261 CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAAC-GAGACAAACAAGGATTCTAGGAATGAT
* * * * *
39630 CTTCATTTATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
325 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACG
** * * *
39695 ATTTTCTTTTGCATGTAAATCATTTCTTTACCCTATTTTCCCTAAAATAAAAATTTATCCCTTAT
390 ATTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAA
*
39760 TTATGACAATCATCAATTCTCA
455 TTATGACAATCATCAATTCTCG
* *
39782 TAACAGTTTGCATTCTTTTCAAGATTGGGAACT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACT
39815 GATGAAAACC
Statistics
Matches: 6358, Mismatches: 747, Indels: 114
0.88 0.10 0.02
Matches are distributed among these distances:
470 3 0.00
471 234 0.04
472 609 0.10
473 4 0.00
474 12 0.00
475 1430 0.22
476 3633 0.57
477 429 0.07
478 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
AACATAGTCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCA
CTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAACGAGACAAACAAGGATTCTAGGAATGATC
TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCGCTAAGATAAATGATATTGACGA
TTTTCTTTTGCATAAAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAAT
TATGACAATCATCAATTCTCG
Found at i:40693 original size:15 final size:15
Alignment explanation
Indices: 40655--40694 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
40645 CAAGAATACA
40655 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
40670 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
40685 AAAAAAAAAA
1 AAAAAAAAAA
40695 CCAGTATTTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:41463 original size:12 final size:11
Alignment explanation
Indices: 41441--41558 Score: 72
Period size: 12 Copynumber: 10.9 Consensus size: 11
41431 AGAGAAAGAA
*
41441 GAGAGAGGAGG
1 GAGATAGGAGG
41452 GATGATAGGAGG
1 GA-GATAGGAGG
*
41464 AGAGACAGGA--
1 -GAGATAGGAGG
*
41474 GAGATAGTA--
1 GAGATAGGAGG
41483 GAGATAGGAGG
1 GAGATAGGAGG
41494 GATGATAGGAGG
1 GA-GATAGGAGG
*
41506 AGAGACAGGA--
1 -GAGATAGGAGG
*
41516 GAGATAGTA--
1 GAGATAGGAGG
41525 GAGATAGGAGG
1 GAGATAGGAGG
41536 GATGATAGGAGG
1 GA-GATAGGAGG
*
41548 AGAGACAGGAG
1 -GAGATAGGAG
41559 AGATAATAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
9 30 0.34
11 6 0.07
12 45 0.52
13 6 0.07
ACGTcount: A:0.40, C:0.03, G:0.47, T:0.10
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:41475 original size:9 final size:9
Alignment explanation
Indices: 41461--41563 Score: 65
Period size: 9 Copynumber: 12.1 Consensus size: 9
41451 GGATGATAGG
*
41461 AGGAGAGAC
1 AGGAGAGAT
41470 AGGAGAGAT
1 AGGAGAGAT
*
41479 AGTAGAGAT
1 AGGAGAGAT
*
41488 AGGAGGGAT
1 AGGAGAGAT
* *
41497 --GATAG-G
1 AGGAGAGAT
*
41503 AGGAGAGAC
1 AGGAGAGAT
41512 AGGAGAGAT
1 AGGAGAGAT
*
41521 AGTAGAGAT
1 AGGAGAGAT
*
41530 AGGAGGGAT
1 AGGAGAGAT
* *
41539 --GATAG-G
1 AGGAGAGAT
*
41545 AGGAGAGAC
1 AGGAGAGAT
41554 AGGAGAGAT
1 AGGAGAGAT
41563 A
1 A
41564 ATAGAGAGAG
Statistics
Matches: 69, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
7 6 0.09
8 8 0.12
9 55 0.80
ACGTcount: A:0.42, C:0.03, G:0.45, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:41491 original size:18 final size:18
Alignment explanation
Indices: 41464--41576 Score: 64
Period size: 18 Copynumber: 5.6 Consensus size: 18
41454 TGATAGGAGG
41464 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
41482 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GAT---AGT
41506 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
41524 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GAT---AGT
*
41548 AGAGACAGGAGAGATAAT
1 AGAGACAGGAGAGATAGT
*
41566 AGAGAGAGGAG
1 AGAGACAGGAG
41577 GGATGACAGA
Statistics
Matches: 73, Mismatches: 10, Indels: 24
0.68 0.09 0.22
Matches are distributed among these distances:
18 31 0.42
20 4 0.05
21 12 0.16
22 4 0.05
24 22 0.30
ACGTcount: A:0.42, C:0.03, G:0.44, T:0.11
Consensus pattern (18 bp):
AGAGACAGGAGAGATAGT
Found at i:41492 original size:42 final size:42
Alignment explanation
Indices: 41431--41591 Score: 259
Period size: 42 Copynumber: 3.8 Consensus size: 42
41421 TAGCCCTCAA
* *
41431 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
41473 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
41515 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
41557 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
41592 GAGAGAAGAA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 112 1.00
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:47814 original size:476 final size:476
Alignment explanation
Indices: 46569--50754 Score: 5892
Period size: 475 Copynumber: 8.8 Consensus size: 476
46559 GTTGTCATCA
* *
46569 GGAACTAAGAACCCATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTAGCAAGAAAAG
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * *
46634 GTTTTCTTTCCACCGTTTTTGTTCGAATCAAAGTTTGCCTCCTAAATAAGACAAACATGAAT-GA
66 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* *
46698 CTATACTAATCCCTATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTGGGATAGAC
131 C-ATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGAC
* * * * * * *
46763 GGAATTGAGGCTTTGGACTCGCAAGAATGGATTTCTTCACTCCATTTTCCGTAAAGTCTAAATTT
195 GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTC
* * * *
46828 GTGTCTCAAATGAGACAAATAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
260 GTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * * * *
46893 TAAAGACATTCTTTTCGTTTGGATAAATGATATTAACGATTTTCTTTTGCACGAAAATCACTTCA
325 TAAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
* * *
46958 TTGCCCTATTTTCCTTAAAATAAAAATCCATCCCTTATTTATGACAATCATC-GATTCTCATAAC
390 TTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAG-TTCTCATAAC
47022 AGTCTCCATTC-TTTCAAGATTG
454 AGTCTCCATTCTTTTCAAGATTG
* *
47044 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAA-
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
*
47108 GTTTT-TATTCCACCGTTGTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAG
66 GTTTTCT-TTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAG
* * * *
47172 TCATACTAATTCCCATTCTTTTCGGCATTAGGCACCATAAACATAGTCAACTCATTGGGATAGGC
130 TCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGAC
* * *
47237 GAAATTGATGCTTTGGATTTGCAAGAATGGATTTCTTCCCTCCATTTTCTGTAAAGTCTAAGTTC
195 GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTC
* * * * * *
47302 GTGTCTCAAATGAGACAAATAAGGATTCTGGTAATGATCTTCATTCATTTTATGATTAGGCACTA
260 GTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * *
47367 TAAACACATTCTTTTCGTTTGGATAAATGATTTTGACGATTTTCTTTTTCATGGAAATCATTTAT
325 TAAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
* * *
47432 TTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAATTATTACAATCATCAGTTCTCGTAACA
390 TTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAGTTCTCATAACA
*
47497 GTCTCCATTCTTTTCGAGATTG
455 GTCTCCATTCTTTTCAAGATTG
* * * * *
47519 GGAACAAAGAACCCATTCCCTTCTTTAGAATACATGACATTGACGCTTTGCTGTCGCAAGAAAAG
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * *
47584 GTTTTCTTCCCACCGTTTTTGTTAGAATCAAAGTTTGCTTGTTAAAAAAGACAAACATGAATAGT
66 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* * * *
47649 CATACTAATCCCCATTCTTTTCAGCATTAGGAACCATAAACGTAGTGAGCTCATTAGGATAGACG
131 CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACG
* *
47714 AAATCGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTATAAGTTCG
196 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* *
47779 TGCCTCAACTAAGACAAACAGGGATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
261 TGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
47844 AAATACATTCTTTTCATTAGGATAAACGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT
326 AAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * * *
47909 TGCCCTATTTTCCCTAAAATAAAAAATCATCCCCTAATTATGACAATCATAAATTCTCATAACAG
391 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAGTTCTCATAACAG
* * *
47974 TCTCCATTCATTTCAGGTTTG
456 TCTCCATTCTTTTCAAGATTG
* * * * *
47995 GGAACTAAGAACCCATTTCCTTCTTTA-GATAAATGATATTGATGCTTTGGTGTCACAAGAAAAG
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* *
48059 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTCCCTCTTAAATAAGTCAAACATGAATAGT
66 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* * * * *
48124 CATA-TCAATCTCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTGAGCTCATTAGGATAGAC
131 CATACT-AATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGAC
* * * *
48188 GAAATTGACGCTTTGGATTCGCAAAAATGGATTTCTTCACTCCAATTTTTGTAAAGTTTAAGTTC
195 GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTC
* * * * *
48253 GTGCCTCAACTAAGACAAACAAGGATTCTACTAGTGACCTTCACTCTTTTTGTGATTAGGCACTA
260 GTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
** * * *
48318 T-AATACATTCTCGTCGTTAAGATAAATGATATTGATGATTCTCTTTTGCGTGGAAATCATTTCT
325 TAAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
* *
48382 TTGCCCTATTTTCCCAAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTCATAACA
390 TTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAGTTCTCATAACA
48447 GTCTCCATTCTTTTCAAGATTG
455 GTCTCCATTCTTTTCAAGATTG
* *
48469 GGAACAAAGAACCTATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * *
48534 GCTTTCTTTCCATCGTTTTTCTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGT
66 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* * * *
48599 CATACTAATCCCCATTCCTTTCAGCATTAGGCACCATAAACGTAGTGAGCTCATTAGGATAGACG
131 CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACG
* * * * *
48664 AAATTGATGCTTTGGATTTGCAAGAAAGAATTTCTTCACTCCAATTTCTGTAAAATCTATGTTCG
196 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* * *
48729 TGCCTCAACTAAGACAAACAGGGATTCTAGTAATGATCTTCATTCATTTTGTGTTTAGGCACTAC
261 TGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
48794 AAATACAATCTTTTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
326 AAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * *
48859 AGCCCTATTTTCCCTAAAATAAATAA-TCATCCCATAATTATGACAATCATCAGTTCTCGTAACA
391 TGCCCTATTTTCCCTAAAATAAA-AATTCATCCCTTAATTATGACAATCATCAGTTCTCATAACA
48923 GTCTCCA-TCTTTTCAAGATTG
455 GTCTCCATTCTTTTCAAGATTG
* * * * * *
48944 AGAACAAAGAACCCATTCCTTTCATTAAGATACAAGACATTGATGGTTTGGTGTCGCAAGAAAAG
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* *
49009 GTTTTCTTTCCACCGTTTTTATTAGAATCAAAGTTTGCCTCTTAAGTAAGACAAACATGAATAGT
66 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* * *
49074 CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATCAGAATAGATG
131 CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACG
*
49139 GAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
196 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* *
49204 TGCCTTAACTAAGACAAACAGGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
261 TGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * *
49269 AAATACAATCTTTTCATTAGGATAAACGATATTGGTGATTTTCTTTTGCGTGGAAATCATTTCTG
326 AAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * *
49334 AGCCCTATTTTCCCTAAAATAAAAAATCATCCCTTAATTATGACAATCATCAGTTCTCGTAACAG
391 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAGTTCTCATAACAG
49399 TCTCCATTCTTTTCAAGATTG
456 TCTCCATTCTTTTCAAGATTG
* *
49420 GGAACAAAGAACCCATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAG
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * *
49485 GTTTTCTTTCCACCCTTTTTGCTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACACGAATAGT
66 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* * * * * * *
49550 CGTGCTAATCCCTAATCTTTTCAGGATTAGGCACCATAAACATAGTCAACTCATTAGAATAGACA
131 CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACG
* *
49615 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAAATTCTGTAAAGTGTAAGTTCG
196 AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
* * * * * *
49680 TGCTTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGTACTAG
261 TGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
49745 AAACATATT-TTTTCGTTAGGATAAATGATATTGATGA-TTTCTTTTTCATGGAAATCATTTCTT
326 AAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
* * * * * * * * *
49808 TGCCTTTTTTTCCTTCAAATAAAAATCCATCTCATAATTATGACAATCATC-GATTGTCGTAACA
391 TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAG-TTCTCATAACA
*
49872 GTCTCCATTCTTTTCAAGATTA
455 GTCTCCATTCTTTTCAAGATTG
* * * * *
49894 GGAACTAAGAACCCATTTCCTTTATTAGGATACATGATATTGATGCTTTAGTGTCGCAAGAAAAT
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * *
49959 GTTTTCTTTCCATCATTTTTGTTAGAATCAAAGTTT-CTCTCCTAAATAAGTCAAACATGAATAG
66 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC-CTCTTAAATAAGACAAACATGAATAG
* * ** * *
50023 TCATACTAATCCCCAATCTTTTTAGCATTAGGCGGCATAAACATTGTCAACTCATTACGATAGAC
130 TCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGAC
**
50088 GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCCATAAAGTCTAAGTTC
195 GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTC
* * * * * * * *
50153 ATTCCTCAAATGAGACAAATAAGGATTCAAGTAACGATCTTCATTCATTTTGTAATTAGGCACTA
260 GTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * * * *
50218 TAAACAGATTCTTTTTGTTTGGACAAATTATATTGATAATTTTCTTTTGC-GGGAAAATCATTTC
325 TAAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AAATCATTTC
* * * * *
50282 TTTGCCCCATTTTCCTTAAAATAAAAATTCATCCCCTAATTATGACAATCATAAATTCTCATAAC
389 TTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAGTTCTCATAAC
* *
50347 AGTCTCCTTTCTTTTCAAGTTTG
454 AGTCTCCATTCTTTTCAAGATTG
* * * * * *
50370 GGAACTAAGAACCCATTTCCTTCTTTAGGATAAATAATATTGATGCTTTGGTGT--C-ATAAAAG
1 GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * *
50432 GTTTTCTTTCCACCGTTTTTGTTAAAATCAAAGTTTCCCTCTTAAATAAGTCAAACATGAATAGT
66 GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
* * * * *
50497 CATA-TCAATCTCTATTCTTTTCAGGATTAGGCACCATAAACATAGTGAGCTCATTAGGATAGAC
131 CATACT-AATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGAC
* *
50561 AAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTTTGTAAAGTCTAAGTTC
195 GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTC
* *
50626 GTGCCTCAACTAAGACAAATAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTA
260 GTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
** *
50691 T-AATACATTCCCTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCATTTCT
325 TAAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
50755 GAATGCTTAT
Statistics
Matches: 3329, Mismatches: 360, Indels: 47
0.89 0.10 0.01
Matches are distributed among these distances:
472 51 0.02
473 239 0.07
474 915 0.27
475 1155 0.35
476 966 0.29
477 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
GGAACTAAGAACCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
GTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGT
CATACTAATCCCCATTCTTTTCAGCATTAGGCACCATAAACATAGTCAACTCATTAGGATAGACG
AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTCG
TGCCTCAACTAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
AAATACATTCTTTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTT
TGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAGTTCTCATAACAG
TCTCCATTCTTTTCAAGATTG
Found at i:51525 original size:13 final size:13
Alignment explanation
Indices: 51507--51532 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51497 CAATTTTTGG
51507 TGTATCGATACAT
1 TGTATCGATACAT
51520 TGTATCGATACAT
1 TGTATCGATACAT
51533 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:51544 original size:32 final size:33
Alignment explanation
Indices: 51487--51550 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
51477 TACAAGCCAA
**
51487 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
51520 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
51551 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:51557 original size:19 final size:18
Alignment explanation
Indices: 51487--51557 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
51477 TACAAGCCAA
51487 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
51507 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
51520 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
51539 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
51558 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:53612 original size:21 final size:20
Alignment explanation
Indices: 53583--53625 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
53573 GGCTAGTGTG
* *
53583 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGCGACCT
*
53604 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
53624 GG
1 GG
53626 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:54085 original size:13 final size:13
Alignment explanation
Indices: 54067--54104 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
54057 ATAATCACCC
54067 TGTATCGATACAG
1 TGTATCGATACAG
*
54080 TGTATCGATACAT
1 TGTATCGATACAG
*
54093 TGTATCAATACA
1 TGTATCGATACA
54105 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:56208 original size:15 final size:15
Alignment explanation
Indices: 56188--56218 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
56178 ATTACGTTTG
*
56188 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
56203 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
56218 G
1 G
56219 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:60295 original size:13 final size:13
Alignment explanation
Indices: 60277--60302 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60267 CAATTTTTGG
60277 TGTATCGATACAT
1 TGTATCGATACAT
60290 TGTATCGATACAT
1 TGTATCGATACAT
60303 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:60314 original size:32 final size:33
Alignment explanation
Indices: 60257--60320 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
60247 TACAAGCCAA
**
60257 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
60290 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
60321 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:60327 original size:19 final size:18
Alignment explanation
Indices: 60257--60327 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
60247 TACAAGCCAA
60257 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
60277 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
60290 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
60309 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
60328 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:60386 original size:20 final size:20
Alignment explanation
Indices: 60360--60416 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
60350 TACATCTTTT
60360 TCATGTATCGATACTTTGCAA
1 TCATGTATCGATACTTTG-AA
60381 -CATGTATCGATACTTTGAA
1 TCATGTATCGATACTTTGAA
**
60400 TTGTGTATCGATACTTT
1 TCATGTATCGATACTTT
60417 TAAGGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (20 bp):
TCATGTATCGATACTTTGAA
Found at i:69610 original size:158 final size:157
Alignment explanation
Indices: 69443--70084 Score: 355
Period size: 159 Copynumber: 4.1 Consensus size: 157
69433 CCCTCTTAAA
* *
69443 TAAGTCAAACATGAATAGTCATATCAATCTCCATTCTTTTCAGGATTAGGCACCATAAACGTAGT
1 TAAGACAAACAAGAATAGTCATATCAATCTCCATTCTTTTCAGGATTAGGCACCATAAACGTA-T
*
69508 GAGC-TCATTAGGATAGACGAAATTGATGCTTTGGATTCGGAAGAATGGATTTCTTCACTCCAAT
65 GAGCTTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAAT
*
69572 TTTTGTAAAGTCTAAGTTCGCGCCTCAAC
130 TTTTGTAAAGTCAAAGTTCGC-CCTCAAC
* * * *
69601 TAAGACAAACAAGGAT--TC-TAGT-AATGACCTTCATTCTTTT-TGTGATTAGGCACTATAATA
1 TAAGACAAACAAGAATAGTCATA-TCAAT---CTCCATTCTTTTCAG-GATTAGGCACCATAA-A
*** * * * * * *** * ** * **
69661 C--ATTCTCTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAAT-CATTTCTTTG
60 CGTATGAGCTTCATTAGGATAGACGAAATTGATGCTTTGGATTCGC-AAG-AATGGATTTCTTCA
* ** * * * * * *
69723 C-CCTATTTTCCCTAAAATAAAAATTCATCCCTTAAT
123 CTCCAATTTT-TGTAAAGTCAAAGTTC-GCCCTCAAC
* * ** ** * * * * * * *
69759 TATGACAATCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATT-GGGAACAAAGAACCTAT
1 TAAGACAAACAAGAATAGTCATATCAATCTCCATTCTTTTCAGGATTAGGCACCATA-AACGTAT
*** * *** * * * * *
69823 TCCCTTCATTAAGATATTTGACATTGATGCTTTGG-TGTCGCAAGAAAAGGCTTTTTTTC-CACC
65 GAGCTTCATTAGGATAGACGAAATTGATGCTTTGGAT-TCGCAAG-AATGG-ATTTCTTCACTCC
* * * *
69886 -GTTTTTGTTAGAA-TCAAAGTTTGCCTCTTAAA
127 AATTTTTG-TA-AAGTCAAAGTTCGCC-CTCAAC
* * *
69918 TAAGACAAACAAGAATAGTCATA-CTAATCCCCATTCCTTTCAGCATTAGGCACCATAAACGTAG
1 TAAGACAAACAAGAATAGTCATATC-AATCTCCATTCTTTTCAGGATTAGGCACCATAAACGTA-
69982 TGAGC-TCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
64 TGAGCTTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAA
* *
70046 TTTTTGTAAAGTCTAAGTTCGTACCTCAAC
129 TTTTTGTAAAGTCAAAGTTCG-CCCTCAAC
70076 TAAGACAAA
1 TAAGACAAA
70085 TAAGGATTCT
Statistics
Matches: 344, Mismatches: 106, Indels: 68
0.66 0.20 0.13
Matches are distributed among these distances:
155 5 0.01
156 5 0.01
157 50 0.15
158 127 0.37
159 133 0.39
160 20 0.06
161 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (157 bp):
TAAGACAAACAAGAATAGTCATATCAATCTCCATTCTTTTCAGGATTAGGCACCATAAACGTATG
AGCTTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATT
TTTGTAAAGTCAAAGTTCGCCCTCAAC
Found at i:73695 original size:476 final size:476
Alignment explanation
Indices: 60686--73682 Score: 18121
Period size: 476 Copynumber: 27.4 Consensus size: 476
60676 GATCCTAATA
* * *
60686 ATTTCTTTGCCCTATTTTCCCAAAAATAAGAATTCATCCCTTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * * *
60751 TTAACAGACTCCAGTCTTTTCAAAATTGGGAACAAAGAACCCATTCCCTTCATTAGGATACTTGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* *
60816 CATTGATGCCTTGGTGTCGCAAGAAAAGGCTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * *
60881 CCTCTTAAATAAGACAAACAAGAATAGTTATAATAATCCCCATTCCTTTCAGCATTAGGCA-CAG
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA-
* * * * * *
60945 TAAACATAGTCAACTCATTAGTATAGACGGAATTAATGCTTTGGATTCGCCAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
** * * * * *
61010 CACTCCAATTTCTACAAAGTCCAAGTTCGTGCCTCAAATGAGATAAATATGGATTCTAGTAAAGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * * * * * *
61075 TCTTCATTCTTTTTGTGATTAGGCACAATAAACACAGTCTTCTCTTTAGGATAAACGATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
*
61140 GATTTTCTTTTGCGTGGAAATA
455 GATTTTCTTTTGCGTGGAAATC
* *
61162 ATTTCCTTGCCCTATTTTCCCTAAAATAAAAATTTATCCCTTAATTATGACAATCATCAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
*
61227 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACAAGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * *
61292 CATTGATGCTTTGGTGTCCCAAGAAAAGGTTTTCTTTCCCCCGTTTTTGTTAGAATCAAAGTTTC
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * * * * *
61357 CCTCTTAATTAAGTCAAACATGAATAGTAATATTGATCTCCATTCTTTTCAGGATTAGGCACCAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * *
61422 AAACGTAGTGAGCTCATAAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATAGATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * *
61487 CCTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACAAACAGGGATTCTAGTAATGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * * * *
61552 CTTCATTCATTTTGTGATTACGTACTATAAACACTTTCTTTTCGTTAGGATAAATGATATTAATG
391 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
* *
61617 ATTTTCTTTTTCATGGAAATC
456 ATTTTCTTTTGCGTGGAAATC
* * * * * * * *
61638 ATTTCTTTGCCTTTTTTTCCATAAAATAAAAATCCATCTCATAATTATGACAATCATCGATTGTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * *
61703 GTAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAGAACCCATTTCCTTTATTAGGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * * * *
61768 TATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCATCATTTTTGTTAGAATCAAAGTTT-
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * **
61832 CTCTCCTAAATAAGTCAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGCATTAGGCGGCA
196 C-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
* * * *
61897 TAAACATTGTCAACTCATTACGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* ** * * * * *
61962 CACTCCATTTTCCATAAAGTCTAAGTTCATTCCTCAAATGAGACAAATAAGGATTCAAGTAACGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * * * * ** *
62027 TCTTCATTCATTTTGTAATTAGGCACTATAAACAGATTCTTTTCATTTGGGCAAATTATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
* *
62092 AATTTTCTTTTGCG-GGAAAAGC
455 GATTTTCTTTTGCGTGG-AAATC
* * *
62114 ATTTCTTTGCCCCATTTTCCCTAAAATAAAAATTCATCCCCTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * * * *
62179 ATAACAGTCTCCTTTCTTTTCAAGTTTGGGAACTAAGAACTCATTTCCTTCTTTAGGATAAATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * * *
62244 TATTGATGCTTTGGTGTCACATA-AAAAAGTTTTCTTTCCACCGTTTTTGTTAAAATCAAAGTTT
131 CATTGATGCTTTGGTGTCGCA-AGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * * * *
62308 CCCTCTTAAATAAGTCAAACATGAATAGTCATA-TCAATCTCTATTCTTTTCAGGATTAGGCACC
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACT-AATCCCCATTCTTTTCAGCATTAGGCACC
* *
62372 ATAAACATAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCT
259 ATAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCT
* * * *
62437 TCACTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAACTAAGACAAATAAGGATTCTAGTAATG
324 TCACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATG
* * * *
62502 ACCTTCATTCTTTTTATGATTAGGCACTAT-AATACATTCTCTTCGTTAGGATAAATGATATTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGA
62566 TGATTTTCTTTTGCGTGGAAATC
454 TGATTTTCTTTTGCGTGGAAATC
* * * *
62589 ATTTCTCTGCCCTATTTTCCCAAAAATAAGAATTCATCCCTTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * *
62654 -TAAACAGACTCCAGTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCATTAGGATACTTG
66 GT-AACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATG
*
62718 ACATTGATGCTTTGGTGTCGCAAGAAAAGGCTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * * *
62783 GCCTCTTAAATAAGACAAACAAGAATAGTTATACTAATCCCCATTCCTTTCAGCATTAGGCACCG
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
* *
62848 TAAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * *
62913 CACTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAACTAAGACAAATAAGGATTCTAGTAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * *
62978 TCTTCATTCTTTTTGTGATTAGGCACTAT-AATACATGCTCTAT-GTTAGGATAAATGATATTGA
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCT-TTTCGTTAGGATAAATGATATTGA
63041 TGATTTTCTTTTGCGTGGAAATC
454 TGATTTTCTTTTGCGTGGAAATC
* * * *
63064 ATTTCTCTGCCCTATTTTCCCAAAAATAAGAATTCATCCCTTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * *
63129 TTAACAGACTCCAGTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCATTAGGATACTTGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * *
63194 CATTGATGTTTTAGTGTCGCAAGAAAAGGCTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * * * *
63259 CCTCTTAAATAAGACAAACAAGAATAGTAATATTGATCTCCATTCTTTTCAGGATTAGGCACCAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * *
63324 AAACGTAGTGAGCTCATAAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATAGATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * *
63389 CCTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAATGAGATAAACAAGGATTCTAGTAATGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * * * * *
63454 TTTCATTCATTTTGTGATTACGTACTATAAACACTTTCTTTTCGTTAGGATAAATGATATTAATG
391 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
* *
63519 ATTTTCTTTTTCATGGAAATC
456 ATTTTCTTTTGCGTGGAAATC
* * * *
63540 ATTTATTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAATTATTACAATCATCAGTTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * *
63605 GAAACAGTCTCCATTCTTTTCGAGATTGGGAACAAAGAACCCAATCCCTTCTTTAGGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * *
63670 CATTGATGCTTTGCTGTCACAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTC
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * * * *
63735 CCTCTTAAATAAGTCAAACATGAATAGTAATATTGATCTCCATTCTTTTCAGGATTAGGCACCAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * *
63800 AAACGTAGTGAGCTCATAAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATAGATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * * * *
63865 CCTCCAATTTCTGTAAAGTCTAAGTTCATGCTTCAATTGAGACAAATAAGGATTCTAGTAATGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * *
63930 CTTCATTCCTTTTGTGATTAGGCACTAT-AATACCTGCTCTTT-GTTAGGATAAATGATATTGAT
391 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCT-TTTCGTTAGGATAAATGATATTGAT
63993 GATTTTCTTTTGCGTGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
* * * *
64015 ATTTCTTTGCCCTATTTTCCCAAAAATAAGAAGTCATCCCTTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * *
64080 TTAACAGACTCCAGTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCATTAGGATACAAGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
*
64145 CATTGATGCTTTGGTGTAGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * * * * *
64210 CCTCTTAAATAAGACAAACACGAATAGTCGTGCTAATCCCTAATCTTTTCAGGATTAGGCGCCAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * * *
64275 AAACATAGTCAACTCATTAGAATAGACAAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * * *
64340 ACTCCAAATTCTATAAAGTGTAAGTTCGTGCTTCAAATGAGACAAACAAGGATTCTAGTAATGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * * * * *
64405 CTTCATTCATTTTGTGATTACGTACTAGAAACATATTTTTTTCGTTAGGATAAATGATATTGATG
391 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
*
64470 ATTTTCTATTT-CATGGAAATC
456 ATTTTCT-TTTGCGTGGAAATC
* * * * * *
64491 ATTTCTTTG-CCTTTTTTGCCTTAAAATAAAAATCCATCTCATAATTATGACAATCATCGATTCT
1 ATTTCTTTGCCCTATTTT-CCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCT
* * *
64555 CGTAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAGAACCCATTTCCTTTATTAGGATACATG
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATG
* * * * * *
64620 ATATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTCCCATCATTTTTGTTAGAATCAAA-TTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * * * **
64684 TCTCTCCTAAATAAGTCAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGCATTAGGCGGC
195 GC-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACC
* * * *
64749 ATAAACATTGTCAACTCATTACGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCT
259 ATAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCT
* ** * * * * * *
64814 TCACTCCATTTTCCATAAAGTCTAAGTTCATTCTTCAAATGAGACAAATAAGGATTCAAGTAACG
324 TCACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATG
* * * * * * *
64879 ATCTTCATTCATTTTATAATTAGGCACTATAAACAGATTCTTTTCGTTTGGACAAATTATATTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGA
*
64944 TAATTTTCTTTTGCG-GGAAAATC
454 TGATTTTCTTTTGCGTGG-AAATC
* * *
64967 ATTTCTTTGCCCCATTTTCCCTAAAATAAAAATTCATCCCCTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * * * *
65032 ATAACAGTCTCCTTTCTTTTCAAGTTTGGGAACTAAGAACCCATTTCCTTCTTTAGGATAAATGT
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * * * *
65097 TATTGATGCTTTGGTGTCACATGAAAAGGTTTTCTTTCCACCGTTTTTGTTAAAATCAAAGTTTC
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * *
65162 CCTCTTAAATAAGTCAAACATGAATAGTCATA-TCAATCTCTATTCTTTTCAGGATTAGGCACCA
196 CCTCTTAAATAAGACAAACATGAATAGTCATACT-AATCCCCATTCTTTTCAGCATTAGGCACCA
* *
65226 TAAACGTAGTGAACTCATAAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATAGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * *
65291 CCCTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACAAACAGGGTTTCTAGTAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * * * * * * *
65356 TCTTCATTCATTTTGGGATTACGTACTATAAACACTTTCTTGTCGTTCGGATAAATGATATTAAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
* *
65421 GATTTTCTTTTCCATGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
* ** * * * *
65443 ATTTATTTGTACTATTTTCCTTAAAACAAAAATTCATCCCTTAATTATTACAATCATCAGTTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* *
65508 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCTTTAGGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* *
65573 CATTGATGGTTTGCTGTCGCAAGAAAAGGTTTTC-TTCTCACCGTTTTTGTTAGAATCAAAGTTT
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTC-CACCGTTTTTGTTAGAATCAAAGTTT
* * *
65637 GCTTGTTAAAAAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
*
65702 TAAACGTAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * *
65767 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAACTAAGACAAACAGGGATTTTAGTAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
*
65832 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCATTAGGATAAATGATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
*
65897 GATTTTCTTTTGCATGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
* * *
65919 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAAATCATCCCCTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * * *
65984 ATAACAGTCTCCATTCATTTCAAGTTTGGGAACTAAGAACCCATTTCCTTCTTTA-GATAAATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * *
66048 TATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTC
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * *
66113 CCTCTTAAATAAGTCAAATATGAATAGTCATA-TCAATCTCCATTCTTTTCAGGATTAGGCACCA
196 CCTCTTAAATAAGACAAACATGAATAGTCATACT-AATCCCCATTCTTTTCAGCATTAGGCACCA
* * *
66177 TAAACGTAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAAAAGGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * * * *
66242 CACTCCAATTTTTGTAAAGTTTAAGTTCATGCCTCAACTAAGACAAACAAGGATTCTAGCAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * * * ** *
66307 CCTTTATTCTTTTTTTGATTAGGCACTAT-AATACATTCTCGTCGTTAAGATAAATGATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
*
66371 GATTCTCTTTTGCGTGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
66393 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* *
66458 ATAACAGTCTCCATTCTTTTCAAGATTGGGAACGAAGAACCCATTCCCTTCATTAGGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
*
66523 CATTGATGCTTTGGTGTCGCAAGAAAAGGCTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * *
66588 CCTCTTAAATAAAACAAACAAGAATAGTCATACTAATCCCCATTCCTTTCAGCATTAGGCACCAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* *
66653 AAACGTAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAAAGGATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * * * *
66718 ACTCCAATTTCTGTAAAATCTATGTTCGTGCCTCAACTAAGACAAACAGGGATTCTAGTAATGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * * *
66783 CTTCATTCATTTTGTGTTTAGGCACTATAAATATAATT-TTTTCATTAGGATAAACGATATTGAT
391 CTTCATTCATTTTGTGATTAGGCACTATAAATA-CATTCTTTTCGTTAGGATAAATGATATTGAT
66847 GATTTTCTTTTGCGTGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
* * *
66869 ATTTCTTAGCCCTATTTTCCCTAAATTAAATAA-TCATCCCTTAATTATGACAATCATCAGTTCT
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAA-AATTCATCCCTTAATTATGACAATCATCAATTCT
* * * * *
66933 CGTAACAGTCTCCATTCTTTTCAAGATTGAGAACAAAGAACCCATTCCTTTCATTAAGATACAAG
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATG
* *
66998 ACATTGATGGTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTATTAGAATCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
*
67063 GCCTCTTAACTAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
* * * * * *
67128 TAAACATAGTCAACTCATCAGGATAGATGGAATTGATGCTTTGGATTAGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * *
67193 CACTCCAATTTCTGTAAAGTTTATGTTCGTGCCTCAACTAAGACAAACAAGGATTCTAGTAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* *
67258 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCCTTTCATTAGGATAAATGATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
* * *
67323 GATTTTCTTTTGTGTAGAAACC
455 GATTTTCTTTTGCGTGGAAATC
*
67345 ATTCCTTTGCCCTATTTT-CCTAAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCT
1 ATTTCTTTGCCCTATTTTCCCT-AAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCT
* *
67409 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCATTAGGATACAAG
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATG
* *
67474 ACATTGATGCTTTGGTGTCCCAAGAAAAGGTTTTCTTTCCCCCGTTTTTGTTAGAATCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * * * * * * *
67539 CCCTCTTAATTAAGTCAAACATGAATAGTAATATTGATCTCCATTCTTTTCAGGATTAGGCACCA
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
* * *
67604 TAAACGTAGTGAGCTCATTAGAATAGACAAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * *
67669 CACTCCAAATTCTATAAAGTGTAAGTTCGTGCTTCAAATGAGACAAACAAGGATTCTAGTAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * * * * *
67734 TCTTCATTCATTTTGTGATTACGTACTAGAAACATATTTTTTTCGTTAGGATAAATGATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
* *
67799 GATTTTCTTTTTCATGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
* * * * * * *
67821 ATTTCTTTGCCTTTTTTTCCTTAAAATAAAAATCCATCTCATAATTATGACAATCATCGATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * *
67886 GTAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAGAACCCATTTCCTTTATTAGAATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * * * *
67951 TATTGATGCTTTAGTGTCGCAAGAAAATGTTTTCTTTCCATCATTTTTGTTAGAATCAAAGTTT-
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * **
68015 CTCTCCTAAATAAGTCAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGCATTAGGCGGCA
196 C-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
* * * *
68080 TAAACATTGTCAACTCATTACGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* ** * * * * *
68145 CACTCCATTTTCCATAAAGTCTAAGTTCATTCCTCAAATGAGACAAATAAGGATTCAAGTAACGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * * * * * * *
68210 TCTTCATTCATTTTGTAATTAGGCACTATAAACAGATTCTTTTCATTTGGACAAATTATATTGAC
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
*
68275 AATTTTCTTTTGCG-GGAAAATC
455 GATTTTCTTTTGCGTGG-AAATC
* *
68297 ATTTCTTTGCCCTATTTTCCCTAAAATAAGAATTCATCCCTTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * *
68362 TTAACAGACTCCAGTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCATTAGGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * *
68427 CATTAATGCTTTAGTGTCGCAAGAAAAGGCTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * * * *
68492 CCTCTTAAATAAGACAAACAAGAATAGTAATATTGATCTCCATTCTTTTCAGGATTAGGCACCAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * * * *
68557 AAACGTAGTGAGCGCATAAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAATAGATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* **
68622 CCTCCAATTTCTGTAAAGTCTAAGTTCGTGTTTCAAATGAGACAAACAAGGATTCTAGTAATGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * * * *
68687 CTTCATTCATTTTGTGATTATGTACTATAAACAC-TTTTTTTCGTTAGGATAAATGATATTAATG
391 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
* *
68751 ATTTTCTTTTTCATGGAAATC
456 ATTTTCTTTTGCGTGGAAATC
* * * * *
68772 ATTTATTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAATTATTACAATCATCAGTTCTG
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * *
68837 GAAACAGTCTCCATTCTTTTCGAGATTTGGAACAAAGAACCCATTCCCTTCTTTAGGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * *
68902 CATTGATGATTTCGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGTTAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * *
68967 CTTGTTAAAAAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGTATTAGGCACCAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* *
69032 AAACGTAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTTGATT--C--G-A---ATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * * * *
69089 ACTCCAATTTCTATAAAGTCTAAGTTCGTGCCTCAACTAAGACAAACAGGGATTTTAGTAATGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * *
69154 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCATTAGGACAAACGATATTGATG
391 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
69219 ATTTTCTTTTGCGTGGAAATC
456 ATTTTCTTTTGCGTGGAAATC
* *
69240 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAAATT-ATCCCCTAATTATGACAATCATGAATTCT
1 ATTTCTTTGCCCTATTTTCCCTAAAAT-AAAAATTCATCCCTTAATTATGACAATCATCAATTCT
* * * * * * *
69304 CATAACAGTCTCCATTCATTTCAAGTTTAGGAACTAAGAACCCATTTCCTTCTTTA-GATAAATG
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATG
* *
69368 ATATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * * *
69433 CCCTCTTAAATAAGTCAAACATGAATAGTCATA-TCAATCTCCATTCTTTTCAGGATTAGGCACC
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACT-AATCCCCATTCTTTTCAGCATTAGGCACC
* *
69497 ATAAACGTAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTGGATTCGGAAGAATGGATTTCT
259 ATAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCT
* * * *
69562 TCACTCCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAACTAAGACAAACAAGGATTCTAGTAATG
324 TCACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATG
* * *
69627 ACCTTCATTCTTTTTGTGATTAGGCACTAT-AATACATTCTCTTCGTTAGGATAAATGATATTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGA
69691 TGATTTTCTTTTGCGTGGAAATC
454 TGATTTTCTTTTGCGTGGAAATC
69714 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * **
69779 ATAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACCTATTCCCTTCATTAAGATATTTGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
69844 CATTGATGCTTTGGTGTCGCAAGAAAAGGCTTTT-TTTCCACCGTTTTTGTTAGAATCAAAGTTT
131 CATTGATGCTTTGGTGTCGCAAGAAAAGG-TTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* *
69908 GCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCCTTTCAGCATTAGGCACCA
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
*
69973 TAAACGTAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * * *
70038 CACTCCAATTTTTGTAAAGTCTAAGTTCGTACCTCAACTAAGACAAATAAGGATTCTAGTAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * *
70103 TCTTCATTCTTTTTGTGATTAGGCACTAT-AATACATTCTCTTCATTAGGATAAATGATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
70167 GATTTTCTTTTGCGTGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
* * *
70189 ATTTCTTTGCCCTATTTTCCCTAAAATAAGAATTCATCCCGTAATTATGACAATCATAAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * *
70254 TTAACAGACTCCAGTCTTTTCAAGATTGGGAACAAAGAACCCATTCCCTTCATTAGGATACTTGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
*
70319 CATTGATGCTTTGGTGTCACAAGAAAAGGCTTTT-TTTCCACCGTTTTTGTTAGAATCAAAGTTT
131 CATTGATGCTTTGGTGTCGCAAGAAAAGG-TTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* *
70383 GCCTCTTAAATAAGACAAACAAGAATAGTCATACAAATCCCCATT-TCTTTCAGCATTAGGCACC
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT-TTTCAGCATTAGGCACC
* *
70447 ATAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTTC-CATGAAAGGATTTC
259 ATAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGA-TTCGCAAGAATGGATTTC
* * * * *
70511 TTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAACTAAGACAAACATGGACTCTAGTAAT
323 TTCACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAAT
* * *
70576 GATCTTCATTCATTTTGTGATTAGGCACTATATATACAATT-TTTTCATTAGGATAAACGATATT
388 GATCTTCATTCATTTTGTGATTAGGCACTATAAATAC-ATTCTTTTCGTTAGGATAAATGATATT
70640 GATGATTTTCTTTTGCGTGGAAATC
452 GATGATTTTCTTTTGCGTGGAAATC
* * * *
70665 ATTTCTTTGCCCAACTTTCCCTAAAATAAAAATTCATCCCTAAATTATGACAATCATCGATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * *
70730 ATAACAGTCTCCATTCTTTTCAAGATTGGAAACAAAGAACCCATTCCCTTCATTAGGATACTTGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
70795 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* *
70860 CCTATTAAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* ** * *
70925 AAACATAGCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCACAAGAATGGATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * * * * * *
70990 ACCCCAATTTTTTTAAAGGCTAAGTTCGTGCTTCAAAGGAGACAAACAAGGATTCTAGTATTGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * * *
71055 CTTCATTCATTTTGTGATTACGTACTATAAATACATTCGTTTCGTTAGGATAAATGATATTAATG
391 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
*
71120 ATTTTCTTTTGCGTGGAAAAC
456 ATTTTCTTTTGCGTGGAAATC
71141 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAA-CAATCAATTCT
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATC-ATCAATTCT
* * *
71205 AGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTTCCTTCAGTAGGATACATG
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATG
* *
71270 ACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTCTTAGAATCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * *
71335 GCCTATTAAATAAGACAAATATGAATAGTCATACTCATCCCCATTCTTTTCAGCATTAGGCACCA
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
* ** *
71400 TAAACATAGCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * * * * *
71465 CACCCCAATTTTTTTAAAGGCCAAGTTCGTGCTTCAAAGGAGACAAACAAGGATTCTAGTAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * * * * *
71530 TCTTCATTCATTTTGTGATTACGTACTATAAACACTTTCTTTTCGTTAGGATAAATAATATTAAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
*
71595 GATTTTCATTTT-CATGGAAATC
455 GATTTTC-TTTTGCGTGGAAATC
* * * * *
71617 ATTTCTTTGCCCTATTTTCCTTAAAATAAAAATTAATCCCCTAATTATAACAATCATCGATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * * * *
71682 GTAACAGTCTCCATTCTTTTCCAGATTGGGAACTAAGAACCCGTTCCTTTCTTTAAGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * *
71747 TATTAATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTC
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
* * * *
71812 CCTCTTAAATAAGTCAAACATGAATAGTCATATTAATCCCCTTTGTTTTCTAG-ATTAGGCACCA
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGCATTAGGCACCA
*
71876 TAAACGTAGTGAGCTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * *
71941 CACACCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAACTAAGACAAACAAGGATTCTAGCAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
*
72006 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTAAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
*
72071 GATTTTCTTTTGCATGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
** * * *
72093 ATTTCTTTGCAGTATTTTCCCTAAAAGAAAAATTTATCCCTTAACTATGACAATCATCAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * *
72158 ATAACAGTCTTCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACAAGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* *
72223 CATTTATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCG---TT-ATAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
*
72284 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCTCCATTCTTTTCAGCATTAGGCA-CAT
196 CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
* * * *
72348 AAACATAGTCAACTCAATAGGATAGAAGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
261 AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
* * *
72413 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCTTCGAATGAGACAAACAAGGATTCTAGGAATGAT
326 ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
* * * * * *
72478 CTTCATTCATTTTGTGATTAAGTACTATAAACATATTCTTTTCGCTA-G------G--ATTGACG
391 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
* * **
72534 ATTTTCTTTTTCATAAAAATC
456 ATTTTCTTTTGCGTGGAAATC
* * * * *
72555 A-TTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTATTTATAATAATCATCGATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
*** * * * * *
72619 GTATTTGTCTCCATTCTTTTCATGATTGGGAGCTAAGAACCCATTTCTTTCATTAGGATAAATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * * *
72684 -TTCTGATGCTTTAGTGTCGCAAGAAAAGGTTTTCTTTCCATCATTTTTGTTAGAATCAAAGTTT
131 CAT-TGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * * * *
72748 CCCTCCTAAATATGTCAAACACGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
* ** *
72813 TAAACATAGCCAACTCAATAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* * * * * * * ** *
72878 AACTCCAATTTCTGTAAAGTCTAAGTTCATACTTCGAATTAGAGAAACAAGGATTCTAGGGAGGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* * * * * *
72943 TCTTCATTCTTTTTGTAATTAGGCACTATAAACACATTCTTTTCGTTTGGATAAATGATACTAAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
73008 GATTTTCTTTTGCGTGGAAATC
455 GATTTTCTTTTGCGTGGAAATC
* *
73030 ATTTCTTTGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTA
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * *
73095 ATAACAGTCTCCATTCTTTTCAAGATTGGGAACTAACAACTCATTCCCTTCATTAGGATA-AGTG
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-TG
* * * * * *
73159 ATATTGACGCTTTGGTGTTGTAAGAAAAGGGTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTT
* * * * * * *
73224 GCCTCTTAAATAAGGCAAACACGAATAGTCATACTAATTCCTAATCCTTTCAGGATTAGGCACCA
195 GCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCA
* * * *
73289 TAAACATAGTCAACTCATTAGGATAGATGAAATTAATGCTTTGGATTCGCAAGAATGGATTTCTT
260 TAAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTT
* *
73354 CACTCCAATTTCTGTAAAGTCTATGTTCGTGCTTCAAATGAGACAAACAAGGATTCTAGTAATGA
325 CACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA
* *
73419 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTGAGGATAAATGATATTAAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGAT
*
73484 GATTTTCTTTTGCGTGGAAAAC
455 GATTTTCTTTTGCGTGGAAATC
*
73506 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTTATCCCTTAATTATGACAATCATCAATTCTC
1 ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
* * *
73571 GTAACAGTCTCCACTCTTTTCAAGATTGGGAACTAAGAACCCAATCCCTTCATTAGGATACAAGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
* * *
73636 CATTTATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCATTTT
131 CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTT
73683 CCATAGAATC
Statistics
Matches: 11187, Mismatches: 1243, Indels: 182
0.89 0.10 0.01
Matches are distributed among these distances:
460 1 0.00
461 143 0.01
462 24 0.00
464 3 0.00
465 70 0.01
466 165 0.01
467 266 0.02
468 141 0.01
469 7 0.00
470 2 0.00
471 168 0.02
472 68 0.01
473 11 0.00
474 322 0.03
475 3023 0.27
476 6732 0.60
477 41 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
GTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGA
CATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTG
CCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCAT
AAACGTAGTGAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTC
ACTCCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGAT
CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTTTTCGTTAGGATAAATGATATTGATG
ATTTTCTTTTGCGTGGAAATC
Found at i:74047 original size:390 final size:389
Alignment explanation
Indices: 73318--74071 Score: 1222
Period size: 390 Copynumber: 1.9 Consensus size: 389
73308 AGGATAGATG
* *
73318 AAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTATGTTCG
1 AAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTACAATTTCTGTAAAGTCTAAGTTCG
* * * *
73383 TGCTTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
66 TACTTCAAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTAATTAGGCACTAC
* *
73448 AAATACATTCTTTTCGTGAGGATAAATGATATTAATGATTTTCTTTTGCGTGGAAAACATTTCTT
131 AAACACATTCTTTTCGTGAGGATAAATGATACTAATGATTTTCTTTTGCGTGGAAAACATTTCTT
* * **
73513 TGCCCTATTTTCCCTAAAATAAAAATTTATCCCTTAATTATGACAATCATCAATTCTCGTAACAG
196 TGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTAATAACAG
*
73578 TCTCCACTCTTTTCAAGATTGGGAACTAAGAACCCAATCCCTTCATTAGGATACAAGACATTTAT
261 TCTCCACTCTTTTCAAGATTGGGAACTAAGAACCCAATCCCTTCATTAGGATACAAGACATTGAT
* * *
73643 GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCATTTTCCATAGAATCAAATTTCGATAGACA
326 GCTTTGGGGTCGCAAG-AAAGGTTTCCTTTCCACCATTTTCCATAGAATCAAATTTCGATAGACA
* * *
73708 AAATTGATGCTTTGGATTCGCGAGAATGGATTTCTTCACTACAATTTCTGTAAAGTCTAAGTTTG
1 AAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTACAATTTCTGTAAAGTCTAAGTTCG
* *
73773 TACTTCGAATGAGACAAACAAGGATTCTAGGGATGATCTTCATTCATTTTGTAATTAGGCACTAC
66 TACTTCAAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTAATTAGGCACTAC
** *
73838 AAACACATTCTTTTCGTTTGGATAAATGATACTAATGATTTTCTTTTGCGTGGAAATCATTTCTT
131 AAACACATTCTTTTCGTGAGGATAAATGATACTAATGATTTTCTTTTGCGTGGAAAACATTTCTT
73903 TGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTAATAACAG
196 TGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTAATAACAG
* * * *
73968 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGTGATATTGA
261 TCTCCACTCTTTTCAAGATTGGGAACTAAGAACCCAATCCCTTCATTAGGATACA-AGACATTGA
*
74032 TGCTTTGGGGTCGCAAGAAAGGTTTCCTTTCCACCGTTTT
325 TGCTTTGGGGTCGCAAGAAAGGTTTCCTTTCCACCATTTT
74072 TGTTAGAATC
Statistics
Matches: 334, Mismatches: 29, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
389 21 0.06
390 313 0.94
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (389 bp):
AAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTACAATTTCTGTAAAGTCTAAGTTCG
TACTTCAAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTAATTAGGCACTAC
AAACACATTCTTTTCGTGAGGATAAATGATACTAATGATTTTCTTTTGCGTGGAAAACATTTCTT
TGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTAATAACAG
TCTCCACTCTTTTCAAGATTGGGAACTAAGAACCCAATCCCTTCATTAGGATACAAGACATTGAT
GCTTTGGGGTCGCAAGAAAGGTTTCCTTTCCACCATTTTCCATAGAATCAAATTTCGATAGACA
Found at i:75504 original size:474 final size:474
Alignment explanation
Indices: 73700--76302 Score: 3395
Period size: 474 Copynumber: 5.5 Consensus size: 474
73690 ATCAAATTTC
* *
73700 GATAGACAAAATTGATGCTTTGGATTCGCGAGAATGGATTTCTTCACTACAATTTCTGTAAAGTC
1 GATAGACAAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTC
* * * *
73765 TAAGTTTGTACTTCGAATGAGACAAACAAGGATTCTAGGGATGATCTTCATTCATTTTGTAATTA
66 TAAGTTCGTGCTTCGAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATTA
* * * * * * * *
73830 GGCACTACAAACACATTCTTTTCGTTTGGATAAATGATACTAATGATTTTCTTTTGCGTGGAAAT
131 AGCACTATAAACATATTCTTTTC-CTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
*
73895 CATTTCTTTGCCATATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCT
195 CATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCT
**
73960 AATAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA-AGT
260 CGTAACAGTCTCCATTCTTTTC-AGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA-T
* *
74024 GATATTGATGCTTTGGGGTCGCAAG-AAAGGTTTCCTTTCCACCGTTTTTGTTAGAATCAAAGTT
323 GACATTGATGCTTTGGGGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTT
* ** * * * * * *
74088 TTCCTTTTAAATAAGACAAACACGAATAGTCATACTAATTCCTAATCTTTTCGGGATTAGGCACC
388 TGCCTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACC
*
74153 ATAAACATAGTCAACTCATTAG
453 ATAAACATAGTCAACTCAATAG
* * * *
74175 GATAGACGAAATTAATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCTAATTTCTGTAAATTC
1 GATAGACAAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTC
* * * *
74240 TAAGTTCGTGCCTC-AACTAAGACAAACAAGGATTCTA-GTATGATCTTCATTTATTTTGTGATT
66 TAAGTTCGTGCTTCGAA-TGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATT
* * * * **
74303 AGGCACTATAAATACATTCTTTTCTTTAGGATAAATGATATTGACAATTTTCTTTTGCATGGAAA
130 AAGCACTATAAACATATTCTTTTC-CTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* *
74368 TCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTTATCCCTTAATTATTAC-A--ATCAATTC
194 TCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTC
*
74430 TCGTAACAGTCTCCATTCTTTTCAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACAAG
259 TCGTAACAGTCTCCATTCTTTTCAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATG
* * * *
74495 ACATTTATGCTTTGGTGGTCGCAAGAAAAAG-TTTCTTTCCACC---ATT-ATAGAATCAAAGTT
324 ACATTGATGCTTTGG-GGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTT
74555 TGCCT-CT---TAA-A-AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACC
388 TGCCTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACC
74614 ATAAACATAGTCAACTCAATAG
453 ATAAACATAGTCAACTCAATAG
* * * *
74636 GATAGACGAAATTGATGCTTTGGATTCGGAAGAATGGATTTCTTTACTCCAATTTCTATAAAGTC
1 GATAGACAAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTC
* *
74701 TAAGTTCGTGCTTCGAATGAGACAAACAAGGAATCTATGAATGATCTTCATTCATTTTGTGATTA
66 TAAGTTCGTGCTTCGAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATTA
* * * *
74766 AGTACTACAAACATATTCTTTTCGCTAGGATAAATGATATTGATGATTTTCTTTTTCA-GAAAAA
131 AGCACTATAAACATATTCTTTTC-CTAGGATAAATGATATTGATGATTTTCTTTTGCATG-GAAA
* * * *
74830 TCA-TTCTTTGCCCTATTTT-CTTAAAATAAAAATTAATCCCTTAATTATGATAATCATCCATTC
194 TCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATT-
**** * * *
74893 CTCGTTTTTGTCTCCATTGTTTTCATGATTGGGATCTAAGAACCC-TT-CCTTCATTAGGATAAA
258 CTCGTAACAGTCTCCATTCTTTTCA-GATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACA
* * *** * *
74956 TGATACTGATGCTTTAATGTCGCAAGAAAAGGTTTTCTTTCCATCGTTTTTGTTGGAATCAAAGT
322 TGACATTGATGCTTTGGGGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGT
* * * *
75021 TTCCCTCCTAAATATGTCAAACATGAATAGTCATACTAATTCCCCATTCTTTTCAGTATTAGGCA
387 TTGCCTCCTAAATAAGACAAACATGAATAGTCATACTAA-TCCCCATTCTTTTCAGCATTAGGCA
*
75086 CCATAAACATAGCCAACTCAATAG
451 CCATAAACATAGTCAACTCAATAG
* *
75110 GATAGACGAAATTGATGCTTTTGGATTCGCAAAGAATGGATTTCTTCACTCCATTTTCTGTAAAG
1 GATAGACAAAATTGATGC-TTTGGATTCGC-AAGAATGGATTTCTTCACTCCAATTTCTGTAAAG
* ** * * * * *
75175 TCTAAGTTTGTGCCGCAAATGAGATAAATAAGGATTCTAGTAATGATCTTCGTTCATTTTGTGAT
64 TCTAAGTTCGTGCTTCGAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGAT
* * * *
75240 T-CGCCACTAT-AACACT-TTCTCCTTT-TTAGGATAAATGATATTGATGATTTTCTTCTGTATG
129 TAAG-CACTATAAACA-TATTCT--TTTCCTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * * *
75301 GAATTCATTTCTTTGCCTTATTTTCCTTAAAATAAAAATTCATCCCTTAATTATGACAATCATCG
190 GAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCA
* * *
75366 ATTCTCGAAATAGTCTCCATTCTTTTCAGATTGGGAACT-AGAACCCATTCCCTTCAGTAGGATA
255 ATTCTCGTAACAGTCTCCATTCTTTTCAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATA
75430 CATGACATTGATGC-TTGGGGTCGCAAGAAAAGGTTTTCTTTCCACCG-TTTTGTTAGAATCAAA
320 CATGACATTGATGCTTTGGGGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAA
* * * *
75493 GTTTGCCTCCT-AATAAGACAAACACGAATAGTCATGCTAATCCCTAATCTTTTCAG-ATTAGGC
385 GTTTGCCTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGC
* *
75556 AACCATAAACATAGTCAACTTATTAG
450 -ACCATAAACATAGTCAACTCAATAG
* * * *
75582 GATAGACAAAATTGATGCCTTGGATTCACAA-CATTGA-TTCTTCACTTCC-ATTTCCTGTAAAG
1 GATAGACAAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCAC-TCCAATTT-CTGTAAAG
*
75644 TCTAAGTTCGTGCTTCCAATGAGACAAACAAGGAATTCTAGGAATGATCTTCATTCATTTTGTGA
64 TCTAAGTTCGTGCTTCGAATGAGACAAACAAGG-ATTCTAGGAATGATCTTCATTCATTTTGTGA
*
75709 TTACTA-TACTATAAACATATTCTTTTCGCTAGGATAAATGATATTGATGATTTTTCTTTTGCAT
128 TTA--AGCACTATAAACATATTCTTTTC-CTAGGATAAATGATATTGATGA-TTTTCTTTTGCAT
* *
75773 GGAAATCATTTCTTTGCCCTATTTTCCCTAAAA-GAAAATTTATCCCTTAATTATGACAATCATC
189 GGAAATCATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATC
*
75837 AATTCTCGTAACAGTCTCCATTCTTTCCAGATT-GGAACTAAGAACCCATTCCCTTCATTAGGAT
254 AATTCTCGTAACAGTCTCCATTCTTTTCAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGAT
* * * *
75901 ACAAGACATTTATGCTTTGGTGCCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAA
319 ACATGACATTGATGCTTTGGGGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAA
* * * *
75966 AG-TTGCCTCTTAAATAAGACAAACATGAATAGTCAAACTAATCCCCATTATTTTCAGCATTGGG
384 AGTTTGCCTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGG
*
76030 CACCATAAACATAGTCAACACAATAG
449 CACCATAAACATAGTCAACTCAATAG
* * * * *
76056 GATAGACAAAATTGATGCCTTGGATTC-AAACATTGGA-TTCTTCACTCCATTTTCTGTAAAGTC
1 GATAGACAAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTC
* *
76119 TAAGTTCGTGCTTCGAATGAGACAAACATGTATTCTAGGAATGATCTTCATTCATTTTGTGATTA
66 TAAGTTCGTGCTTCGAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATTA
* * * *
76184 TGTACTATAAACATATTCTTTTCGCTAGGATAAATG--A-TGTTGATTTTCTTTTTCATGGAAAT
131 AGCACTATAAACATATTCTTTTC-CTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* *
76246 CATTTCTTTGCCCTATTTTCCATAAAATAAAAATTCATCCCTTAAATATGACAATCA
195 CATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCA
76303 ACGATTCACA
Statistics
Matches: 1867, Mismatches: 205, Indels: 119
0.85 0.09 0.05
Matches are distributed among these distances:
460 28 0.01
461 171 0.09
462 95 0.05
463 46 0.02
464 22 0.01
465 18 0.01
466 3 0.00
467 77 0.04
468 46 0.02
469 43 0.02
470 88 0.05
471 114 0.06
472 214 0.11
473 170 0.09
474 347 0.19
475 190 0.10
476 152 0.08
477 43 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
GATAGACAAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTC
TAAGTTCGTGCTTCGAATGAGACAAACAAGGATTCTAGGAATGATCTTCATTCATTTTGTGATTA
AGCACTATAAACATATTCTTTTCCTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
ATTTCTTTGCCCTATTTTCCCTAAAATAAAAATTCATCCCTTAATTATGACAATCATCAATTCTC
GTAACAGTCTCCATTCTTTTCAGATTGGGAACTAAGAACCCATTCCCTTCATTAGGATACATGAC
ATTGATGCTTTGGGGTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGC
CTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTAGGCACCATA
AACATAGTCAACTCAATAG
Done.