genome.fa.s1249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1249
Parameters: 2 7 7 80 10 50 1000
Length:  38693

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88--157	20	3.6	19	86	9	88	31	15	17	35	1.91
1812--1864	20	2.7	19	88	11	72	37	13	18	30	1.89
2317--2369	20	2.7	19	88	11	72	37	13	18	30	1.89
4209--4411	79	2.6	80	85	7	254	51	12	18	17	1.76
4225--4780	41	13.6	41	71	12	266	48	13	19	17	1.81
4385--4480	49	2.0	48	83	2	120	54	13	15	16	1.72
4355--4780	122	3.4	123	75	7	308	48	13	20	17	1.80
5158--5239	41	2.0	41	92	0	137	45	12	20	21	1.84
5700--5860	30	5.4	29	71	12	130	50	22	13	13	1.75
5568--6133	60	9.6	60	75	7	426	49	19	15	15	1.80
5615--6133	176	2.9	175	79	6	521	49	20	14	15	1.79
5568--5976	116	3.5	115	78	8	396	48	20	15	15	1.82
6230--6377	59	2.5	59	77	6	147	47	16	13	22	1.82
7433--7481	13	4.2	13	73	24	54	38	18	10	32	1.84
7532--7605	19	3.8	19	87	1	94	36	12	18	32	1.88
7590--7615	13	2.0	13	100	0	52	38	15	15	30	1.88
10230--10270	19	2.2	18	86	8	55	51	21	0	26	1.48
11330--11355	13	2.0	13	100	0	52	30	15	15	38	1.88
11394--11467	20	3.7	20	72	15	71	31	17	12	39	1.86
11394--11486	41	2.3	40	96	1	168	31	18	12	37	1.88
11414--11486	20	3.6	20	81	3	101	31	19	13	35	1.91
12558--12671	20	5.6	20	75	4	120	38	13	17	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12576--12693	21	5.7	21	74	5	123	43	11	16	28	1.83
12558--12693	41	3.3	41	98	1	263	41	12	16	29	1.85
12732--12757	13	2.0	13	100	0	52	38	15	15	30	1.88
18865--18942	20	3.7	20	76	18	77	25	15	15	43	1.86
18929--18967	13	3.0	13	96	0	69	30	17	15	35	1.91
21405--21518	20	5.6	20	75	4	120	38	13	17	30	1.88
21423--21540	21	5.7	21	74	5	123	43	11	16	28	1.83
21405--21540	41	3.3	41	98	1	263	41	12	16	29	1.85
21561--21623	19	3.6	19	76	24	84	36	15	19	28	1.92
21579--21636	13	4.0	13	76	23	62	37	15	17	29	1.90
21561--21636	32	2.4	32	100	0	152	36	15	18	28	1.92
22481--22650	83	2.0	83	100	0	340	24	27	3	44	1.70
23407--23431	13	1.9	13	100	0	50	32	16	16	36	1.90
27157--27182	13	2.0	13	100	0	52	30	15	15	38	1.88
27221--27294	20	3.7	20	72	15	71	31	17	12	39	1.86
27221--27313	41	2.3	40	96	1	168	31	18	12	37	1.88
27241--27313	20	3.6	20	81	3	101	31	19	13	35	1.91
31712--31741	3	10.0	3	92	0	51	33	36	0	30	1.58
33315--33363	13	4.2	13	75	24	63	36	18	12	32	1.88
33315--33384	33	2.1	33	89	7	106	34	18	12	34	1.89
33412--33468	19	2.9	19	80	12	71	33	17	15	33	1.92
34111--34259	44	3.4	44	68	14	117	42	11	20	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33928--34253	88	3.7	88	80	7	360	43	12	19	23	1.86
34510--34808	112	2.7	112	80	2	305	36	12	14	36	1.84

Tables:   1

The End!