Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1250

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3481
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Found at i:264 original size:18 final size:17

Alignment explanation


    Indices: 226--265  Score: 53
    Period size: 18  Copynumber: 2.3  Consensus size: 17

        216 TATATAATAT

                            *
        226 AAATAAAAAAAAAGCAT
          1 AAATAAAAAAAAAGCAA

                          *   
        243 AAATAATAAAAAAATCAA
          1 AAATAA-AAAAAAAGCAA

                 
        261 AAATA
          1 AAATA

        266 GAATGCAAAC


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  17    6  0.30
  18   14  0.70

ACGTcount: A:0.78, C:0.05, G:0.03, T:0.15


Consensus pattern (17 bp):   
AAATAAAAAAAAAGCAA
Done.