genome.fa.s1257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1257
Parameters: 2 7 7 80 10 50 1000
Length:  106541

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380--474	34	2.6	37	80	8	106	22	13	23	41	1.89
5154--5189	2	18.0	2	100	0	72	50	0	0	50	1.00
6751--6784	2	17.0	2	100	0	68	0	50	0	50	1.00
8949--8988	19	2.1	19	100	0	80	22	10	20	47	1.79
11191--11223	6	5.5	6	100	0	66	48	18	0	33	1.48
14442--14471	2	15.5	2	93	6	53	53	0	0	46	1.00
16662--16721	29	2.0	30	81	9	70	40	0	1	58	1.08
22539--22563	2	12.5	2	100	0	50	52	0	48	0	1.00
22721--22779	18	3.2	18	68	17	50	42	6	3	47	1.46
22709--22779	37	1.9	36	86	13	101	40	5	4	49	1.46
23395--23447	23	2.2	25	80	12	67	26	15	1	56	1.49
25159--25208	23	2.1	24	82	10	59	68	10	2	20	1.29
26274--26321	23	2.0	23	88	11	71	66	0	0	33	0.92
26286--26335	23	2.2	23	82	10	59	60	2	2	36	1.20
26488--26627	46	3.0	47	83	10	164	50	0	2	47	1.16
26520--26612	26	3.7	26	72	16	88	51	0	1	47	1.07
26529--26575	21	2.4	19	89	7	67	53	0	0	46	1.00
26545--26612	27	2.4	27	83	9	75	51	0	1	47	1.09
26488--26619	48	2.8	47	84	10	148	50	0	2	47	1.13
26607--26661	14	3.9	14	83	6	67	50	1	1	45	1.22
26633--26672	21	1.9	21	84	0	53	57	0	0	42	0.98
26607--26662	29	2.0	29	85	3	78	50	1	1	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32919--33051	71	1.9	69	83	9	171	53	0	0	45	1.05
32954--33246	113	2.7	107	81	15	318	50	1	2	45	1.21
33131--33211	32	2.5	32	82	13	87	49	0	3	46	1.19
33154--33228	32	2.4	30	80	14	80	52	0	2	45	1.15
33233--33275	21	2.2	19	83	8	50	60	4	4	30	1.37
33565--33778	107	2.0	107	88	6	319	43	3	2	50	1.31
34357--34704	91	3.8	92	89	4	546	42	7	15	34	1.76
35845--35880	11	3.2	12	84	15	58	61	0	0	38	0.96
36093--36222	43	2.9	44	67	17	115	56	2	3	37	1.27
35642--36297	296	2.2	295	89	2	1001	46	7	8	37	1.63
36322--36364	22	2.0	22	81	9	52	58	2	0	39	1.11
36519--36556	9	4.1	9	86	6	58	44	0	0	55	0.99
36519--36556	19	2.1	18	90	5	58	44	0	0	55	0.99
38156--38184	2	14.5	2	100	0	58	48	0	0	51	1.00
44391--45007	59	10.6	59	73	9	266	26	12	14	46	1.80
44408--44988	117	5.0	115	74	9	360	27	12	14	45	1.81
44408--44949	59	9.3	58	73	9	305	26	12	15	45	1.81
51110--51158	22	2.2	22	92	0	80	46	12	10	30	1.74
51908--51966	31	1.9	30	86	10	84	44	0	0	55	0.99
51929--52046	19	6.5	18	69	20	68	38	0	0	59	1.09
51991--52038	13	3.8	13	84	13	64	35	0	0	64	0.94
52580--52622	20	2.2	20	86	0	59	53	0	2	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52637--52672	14	2.6	14	91	8	56	58	0	0	41	0.98
52637--52683	13	3.2	14	80	17	51	55	0	0	44	0.99
53576--53631	27	2.0	28	93	3	96	26	12	12	48	1.77
53833--53888	19	2.7	20	79	15	60	48	0	1	50	1.11
54858--54897	16	2.5	16	79	0	53	32	0	5	62	1.17
54976--55027	27	1.9	27	84	0	68	44	0	1	53	1.11
55401--55430	3	10.0	3	100	0	60	66	0	0	33	0.92
56080--56120	20	2.0	20	90	9	64	70	0	0	29	0.87
57403--57442	15	2.6	16	92	4	64	67	0	25	7	1.16
58052--58097	22	2.1	22	84	8	58	39	6	0	54	1.26
58455--58487	14	2.2	16	89	10	52	51	0	3	45	1.16
58764--58793	12	2.5	12	88	0	51	16	56	0	26	1.40
58989--59030	18	2.3	18	87	0	57	42	4	4	47	1.45
59418--59461	23	2.0	23	86	8	65	47	4	4	43	1.44
68025--68058	16	2.1	16	88	0	50	35	2	0	61	1.11
71751--71799	19	2.6	19	90	0	71	24	14	4	57	1.55
73983--74041	26	2.3	27	80	14	70	44	0	0	55	0.99
74470--74514	13	3.5	12	82	11	54	37	0	2	60	1.09
74479--74512	14	2.6	13	90	9	52	38	0	0	61	0.96
75006--75072	27	2.3	29	77	7	75	53	7	10	28	1.62
76205--76248	22	2.0	22	81	0	52	56	0	2	40	1.11
77822--77851	14	2.2	14	94	5	53	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79523--79594	31	2.2	32	80	12	83	38	6	5	48	1.53
80580--80655	38	2.1	36	85	9	100	38	0	5	56	1.22
81115--81140	2	13.0	2	100	0	52	50	0	0	50	1.00
81569--81621	14	4.0	14	78	14	67	43	0	1	54	1.11
81567--81635	14	5.9	11	75	21	61	43	0	1	55	1.08
81567--81626	25	2.4	25	94	0	102	43	0	1	55	1.10
82183--82225	12	3.7	12	78	15	54	39	0	0	60	0.97
82686--82735	18	2.8	18	85	14	68	32	0	2	66	1.03
83838--83904	7	8.9	7	79	11	62	43	0	1	55	1.09
83834--83904	23	3.0	23	82	13	67	43	0	1	54	1.08
83838--83904	30	2.2	30	82	12	75	43	0	1	55	1.09
84381--84448	2	34.0	2	90	0	109	45	0	2	51	1.16
84841--84866	2	13.0	2	100	0	52	50	0	0	50	1.00
87069--87108	19	2.1	19	90	9	64	52	10	0	37	1.35
87133--87177	23	2.0	22	83	8	56	55	0	6	37	1.26
87911--87946	18	1.9	19	88	5	56	33	2	30	33	1.72
88743--88816	17	4.2	17	71	8	51	41	0	2	55	1.14
89962--89995	18	1.9	18	88	5	52	50	0	0	50	1.00
98281--98327	19	2.4	19	86	10	60	38	2	0	59	1.09
100406--100464	25	2.4	24	72	13	66	57	0	0	42	0.98
100707--100748	15	2.9	15	86	6	52	47	0	0	52	1.00
101891--101941	17	3.1	17	73	26	56	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101878--101951	33	2.2	33	83	4	96	60	1	0	37	1.05
101878--101950	32	2.2	34	85	7	96	60	1	0	38	1.06
101891--101954	18	3.7	18	75	23	66	56	0	0	43	0.99
101892--101972	32	2.7	31	80	16	82	55	0	0	44	0.99
102369--102455	42	2.1	42	97	0	165	27	10	33	28	1.90

Tables:   1

The End!