Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold126
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2080828
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 191490 characters in sequence are not A, C, G, or T
File 2 of 13
Found at i:171380 original size:13 final size:13
Alignment explanation
Indices: 171362--171386 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
171352 AAAAAAAATA
171362 TGTATCGATACAT
1 TGTATCGATACAT
171375 TGTATCGATACA
1 TGTATCGATACA
171387 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:172434 original size:18 final size:19
Alignment explanation
Indices: 172400--172442 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
172390 GTAAAATTAC
172400 TAAAAAATCAAAGTAAAAT
1 TAAAAAATCAAAGTAAAAT
172419 TAAAATAAT-AAA-TAAAAT
1 TAAAA-AATCAAAGTAAAAT
172437 TAAAAA
1 TAAAAA
172443 TGTTTTGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.04
18 11 0.48
19 8 0.35
20 3 0.13
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (19 bp):
TAAAAAATCAAAGTAAAAT
Found at i:180224 original size:17 final size:18
Alignment explanation
Indices: 180196--180234 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
180186 CTCCTTTAAG
*
180196 AAAACTATCATTTCTTTA
1 AAAACTATCATTTATTTA
180214 AAAACTA-CATTTATTTA
1 AAAACTATCATTTATTTA
180231 AAAA
1 AAAA
180235 AATTTATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAACTATCATTTATTTA
Found at i:180235 original size:18 final size:19
Alignment explanation
Indices: 180190--180235 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
180180 TGACCACTCC
*
180190 TTTAAGAAAACTATCATTTC
1 TTTAA-AAAACTATCATTTA
180210 TTT-AAAAACTA-CATTTA
1 TTTAAAAAACTATCATTTA
180227 TTTAAAAAA
1 TTTAAAAAA
180236 ATTTATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 8 0.33
18 12 0.50
19 1 0.04
20 3 0.12
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (19 bp):
TTTAAAAAACTATCATTTA
Found at i:181384 original size:21 final size:21
Alignment explanation
Indices: 181360--181402 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
181350 ACTCCTATTC
181360 AATTTTGAAAATTCATTATAA
1 AATTTTGAAAATTCATTATAA
181381 AATTTTGAAAATTCATTATAA
1 AATTTTGAAAATTCATTATAA
181402 A
1 A
181403 GGTTAGGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.42
Consensus pattern (21 bp):
AATTTTGAAAATTCATTATAA
Found at i:181827 original size:13 final size:13
Alignment explanation
Indices: 181809--181835 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
181799 ACATTATGCT
181809 TTGTATCGATACA
1 TTGTATCGATACA
181822 TTGTATCGATACA
1 TTGTATCGATACA
181835 T
1 T
181836 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:181844 original size:19 final size:19
Alignment explanation
Indices: 181820--181875 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
181810 TGTATCGATA
*
181820 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGCT
*
181839 CATTGTATCGATACATACT
1 CATTGTATCGATACATGCT
*
181858 CAACTGTATCGATACATG
1 C-ATTGTATCGATACATG
181876 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:188414 original size:13 final size:13
Alignment explanation
Indices: 188392--188432 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
188382 AAATGTTCTT
*
188392 TGTATCGATACAC
1 TGTATCGATACAA
*
188405 TGTATTGATACAA
1 TGTATCGATACAA
188418 TGTATCGATACAA
1 TGTATCGATACAA
188431 TG
1 TG
188433 GGTTACTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:191971 original size:42 final size:41
Alignment explanation
Indices: 191918--192068 Score: 194
Period size: 42 Copynumber: 3.6 Consensus size: 41
191908 AGTCGACAGA
* *
191918 CAGACGGAGGATAAAAAAGTTTCTCGGGTCTAAGTCGATGAG
1 CAGACGAAGGATAAAAAAGTCTCTCGGGTCTAAGTCGATG-G
* * * *
191960 CAGATGAAGGATAAAGAAGTCTCTCGAGTTTAAGTCGATGG
1 CAGACGAAGGATAAAAAAGTCTCTCGGGTCTAAGTCGATGG
* *
192001 ACAGACGAAAGATAAAAAAGTCTCTCGGGTCTAAGCCGATGGG
1 -CAGACGAAGGATAAAAAAGTCTCTCGGGTCTAAGTCGAT-GG
*
192044 CAGACGAATGATAAAAAAGTCTCTC
1 CAGACGAAGGATAAAAAAGTCTCTC
192069 AAGTTTGAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 91 0.97
43 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (41 bp):
CAGACGAAGGATAAAAAAGTCTCTCGGGTCTAAGTCGATGG
Found at i:192057 original size:84 final size:84
Alignment explanation
Indices: 191907--192074 Score: 237
Period size: 84 Copynumber: 2.0 Consensus size: 84
191897 TGAGCTCACA
* * * * *
191907 AAGTCGACAGACAGACGGAGGATAAAAAAGTTTCTCGGGTCTAAGTCGATGAGCAGATGAAGGAT
1 AAGTCGACAGACAGACGAAAGATAAAAAAGTCTCTCGGGTCTAAGCCGATGAGCAGACGAAGGAT
* *
191972 AAAGAAGTCTCTCGAGTTT
66 AAAAAAGTCTCTCAAGTTT
** * *
191991 AAGTCGATGGACAGACGAAAGATAAAAAAGTCTCTCGGGTCTAAGCCGATGGGCAGACGAATGAT
1 AAGTCGACAGACAGACGAAAGATAAAAAAGTCTCTCGGGTCTAAGCCGATGAGCAGACGAAGGAT
192056 AAAAAAGTCTCTCAAGTTT
66 AAAAAAGTCTCTCAAGTTT
192075 GAATTGCCGA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
84 73 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (84 bp):
AAGTCGACAGACAGACGAAAGATAAAAAAGTCTCTCGGGTCTAAGCCGATGAGCAGACGAAGGAT
AAAAAAGTCTCTCAAGTTT
Found at i:192172 original size:42 final size:41
Alignment explanation
Indices: 192126--192255 Score: 172
Period size: 42 Copynumber: 3.1 Consensus size: 41
192116 ATGTCTCTCG
*
192126 GGTCTAAGCCGATGGGCAGATGAAAGATAAAGAAGTCTCCTA
1 GGTCTAAGCCGACGGGCAGA-GAAAGATAAAGAAGTCTCCTA
* *
192168 GGTCTAAGCCGACGGGTAGACGAATGATAAAGAAGTCTCCTA
1 GGTCTAAGCCGACGGGCAGA-GAAAGATAAAGAAGTCTCCTA
* *
192210 GGTCTAAGCCGACGGGCAGACAAAGA-ATAAGAAGTCTTCTA
1 GGTCTAAGCCGACGGGCAGAGAAAGATA-AAGAAGTCTCCTA
*
192251 AGTCT
1 GGTCT
192256 GAGCTGACAA
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
40 1 0.01
41 20 0.26
42 57 0.73
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (41 bp):
GGTCTAAGCCGACGGGCAGAGAAAGATAAAGAAGTCTCCTA
Found at i:192274 original size:41 final size:42
Alignment explanation
Indices: 192101--192287 Score: 121
Period size: 42 Copynumber: 4.5 Consensus size: 42
192091 AAAGAATGGT
* ** ***
192101 AGACAAAGAATGAAGATGTCT-CTCGGGTCTAAGCCGATGGGC
1 AGACAAAGAATGAAGAAGTCTCCT-AAGTCTAAGCCGACAAGC
* * * ** *
192143 AGATGAAAG-ATAAAGAAGTCTCCTAGGTCTAAGCCGACGGGT
1 AGA-CAAAGAATGAAGAAGTCTCCTAAGTCTAAGCCGACAAGC
* * * **
192185 AGACGAATG-ATAAAGAAGTCTCCTAGGTCTAAGCCGACGGGC
1 AGAC-AAAGAATGAAGAAGTCTCCTAAGTCTAAGCCGACAAGC
* * *
192227 AGACAAAGAAT-AAGAAGTCTTCTAAGTCTGAGCTGACAAGC
1 AGACAAAGAATGAAGAAGTCTCCTAAGTCTAAGCCGACAAGC
* *
192268 ATACAAAGAGTGAAGAAGTC
1 AGACAAAGAATGAAGAAGTC
192288 ACCCGAGTCT
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
41 36 0.30
42 80 0.66
43 6 0.05
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (42 bp):
AGACAAAGAATGAAGAAGTCTCCTAAGTCTAAGCCGACAAGC
Found at i:205548 original size:13 final size:13
Alignment explanation
Indices: 205530--205559 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
205520 AAATTTCTTC
*
205530 ATGTATCGATACA
1 ATGTATCAATACA
205543 ATGTATCAATACA
1 ATGTATCAATACA
205556 ATGT
1 ATGT
205560 CCCATGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (13 bp):
ATGTATCAATACA
Found at i:205652 original size:19 final size:20
Alignment explanation
Indices: 205604--205656 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
205594 CTGCCACTTT
*
205604 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAA
* *
205624 TATGTCTCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
205643 CATGTATCGATACA
1 CATGTATCGATACA
205657 TTGTATTGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:208213 original size:13 final size:13
Alignment explanation
Indices: 208190--208229 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
208180 ATAGTAACCC
208190 ATGTATCGATACA
1 ATGTATCGATACA
* *
208203 TTGTATTGATACA
1 ATGTATCGATACA
208216 ATGTATCGATACA
1 ATGTATCGATACA
208229 A
1 A
208230 AGAATATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:209792 original size:51 final size:51
Alignment explanation
Indices: 209721--209999 Score: 237
Period size: 51 Copynumber: 5.4 Consensus size: 51
209711 TGAAAATAAT
* *
209721 GGGGTTGGAGTATCCACGATTGTGAGAAATCAATATTTTAGAAATAAGGCC
1 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCC
* * * * *
209772 GGGGTTGAAGTATTCCCGATTGTGAGAAATCGATATTTTGGAAATAAAGCT
1 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCC
* * * * * ***
209823 AGGGTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGGAGTATCCCCGATGAAAT-AA--C
1 GGGGTTGGAGTATCCCCGATTGTGAGA-AA------T-CAATAT--TTTA-GAAATAAAGCC
* **
209879 GGAGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATATGGCC
1 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCC
* *
209930 GGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCC
1 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCC
209981 GGGGTTGGAGTATCCCCGA
1 GGGGTTGGAGTATCCCCGA
210000 AATAACGGGG
Statistics
Matches: 174, Mismatches: 37, Indels: 34
0.71 0.15 0.14
Matches are distributed among these distances:
48 8 0.05
49 5 0.03
51 127 0.73
52 1 0.01
55 1 0.01
56 18 0.10
58 6 0.03
59 8 0.05
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.27
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCC
Found at i:209859 original size:28 final size:28
Alignment explanation
Indices: 209824--209897 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
209814 AATAAAGCTA
**
209824 GGGTTGGAGTATCCCCTCGGAAATAACG
1 GGGTTGGAGTATCCCCGAGGAAATAACG
*
209852 GGGTTGGAGTATCCCCGATGAAATAACG
1 GGGTTGGAGTATCCCCGAGGAAATAACG
*
209880 GAGTTGGAGTATCCCCGA
1 GGGTTGGAGTATCCCCGA
209898 TTGTGAGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCGAGGAAATAACG
Found at i:209986 original size:158 final size:155
Alignment explanation
Indices: 209692--210063 Score: 593
Period size: 158 Copynumber: 2.4 Consensus size: 155
209682 AAAATAAAAT
* * * *
209692 CGGGATTGGAGTATCCCCG-TGAAAATAATGGGGTTGGAGTATCCACGATTGTGAGAAATCAATA
1 CGGGGTTGGAGTATCCCCGATG-AAATAACGGAGTTGGAGTATCCCCGATTGTGAGAAATCAATA
* *
209756 TTTTAGAAATAAGGCCGGGGTTGAAGTATTCCCGATTGTGAGAAATCGATATTTTGGAAATAAAG
65 TTTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAG
*
209821 CTAGGGTTGGAGTATCCCCTCGGAAATAA
130 CCAGGGTTGGAGTAT-CCC-C-GAAATAA
209850 CGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTGTGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTGTGAGAAATCAATAT
*
209915 TTTAGAAATATGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGC
66 TTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGC
*
209980 CGGGGTTGGAGTATCCCCGAAATAA
131 CAGGGTTGGAGTATCCCCGAAATAA
*
210005 CGGGGTTGGAGTATCCCCGACGAAATAATCGGAGTTGGAGTATCCCCGATTGTGGAGAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA-CGGAGTTGGAGTATCCCCGATTGT-GAGAA
210064 TTGGTGTTTT
Statistics
Matches: 201, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
155 34 0.17
156 25 0.12
157 8 0.04
158 132 0.66
159 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (155 bp):
CGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTGTGAGAAATCAATAT
TTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGC
CAGGGTTGGAGTATCCCCGAAATAA
Found at i:210011 original size:25 final size:26
Alignment explanation
Indices: 209980--210053 Score: 105
Period size: 25 Copynumber: 2.8 Consensus size: 26
209970 GAAATAAAGC
209980 CGGGGTTGGAGTATCCCCGAAATAA-
1 CGGGGTTGGAGTATCCCCGAAATAAT
210005 CGGGGTTGGAGTATCCCCGACGAAATAAT
1 CGGGGTTGGAGTAT-CCC--CGAAATAAT
*
210034 CGGAGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
210054 TTGTGGAGAA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
25 14 0.32
26 6 0.14
28 11 0.25
29 13 0.30
ACGTcount: A:0.26, C:0.22, G:0.32, T:0.20
Consensus pattern (26 bp):
CGGGGTTGGAGTATCCCCGAAATAAT
Found at i:210045 original size:29 final size:28
Alignment explanation
Indices: 209984--210053 Score: 101
Period size: 29 Copynumber: 2.6 Consensus size: 28
209974 TAAAGCCGGG
*
209984 GTTGGAGTAT-CCC--CGAAATAACGGG
1 GTTGGAGTATCCCCGACGAAATAACGGA
210009 GTTGGAGTATCCCCGACGAAATAATCGGA
1 GTTGGAGTATCCCCGACGAAATAA-CGGA
210038 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
210054 TTGTGGAGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
25 10 0.25
26 3 0.08
28 8 0.20
29 19 0.47
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (28 bp):
GTTGGAGTATCCCCGACGAAATAACGGA
Found at i:210079 original size:105 final size:106
Alignment explanation
Indices: 209933--210126 Score: 266
Period size: 105 Copynumber: 1.8 Consensus size: 106
209923 TATGGCCGGG
* *
209933 GTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCC
1 GTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
*
209998 -GAAATAACGGGGTTGGAGTATCCCCGACGAAATAATCGGA
66 TGAAATAACGGGATTGGAGTATCCCCGACGAAATAATCGGA
* *** * *
210038 GTTGGAGTATCCCCGATTGTG-GAGAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCC
1 GTTGAAGTATCCCCGATTGTGAGA-AATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCC
210102 CTTGGAAATAACGGGATTGGAGTAT
65 C-T-GAAATAACGGGATTGGAGTAT
210127 TCCCAATTAT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
104 2 0.03
105 54 0.71
108 20 0.26
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (106 bp):
GTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
TGAAATAACGGGATTGGAGTATCCCCGACGAAATAATCGGA
Found at i:210168 original size:79 final size:79
Alignment explanation
Indices: 210005--210291 Score: 371
Period size: 79 Copynumber: 3.6 Consensus size: 79
209995 CCCGAAATAA
* * * * **
210005 CGGGGTTGGAGTATCCCCGAC-GAAATAATC-GGAGTTGGAGTATCCCCGATTGTGGAGAATTGG
1 CGGGGTTGGAGTATCCCC-TCGGAAATAA-CGGGA-TTGGAGTATCCCCGATTATGAAAAATTAA
*
210068 TGTTTTAGAAATAAAAT
63 TGTTTTAGAAATAAAAC
* * *
210085 CGGGGTTGGAGTATCCCCTTGGAAATAACGGGATTGGAGTATTCCCAATTATGAAAAATTAATGT
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTAATGT
*
210150 TTTAAAAATAAAAC
66 TTTAGAAATAAAAC
* * * *
210164 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATAT
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTAATGT
*
210229 TTTAGAAATAAAGC
66 TTTAGAAATAAAAC
* *
210243 TGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCCGAT
210292 GAAATAACGG
Statistics
Matches: 183, Mismatches: 22, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
79 155 0.85
80 28 0.15
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTAATGT
TTTAGAAATAAAAC
Found at i:210275 original size:107 final size:106
Alignment explanation
Indices: 210164--210367 Score: 320
Period size: 107 Copynumber: 1.9 Consensus size: 106
210154 AAAATAAAAC
* *
210164 CGGGGTTGGAGTATCCCCTCGA-AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATA
1 CGGGGTTGGAGTAT-CCC-CGAGAAATAACGGAGTTGGAGTATCCCCGATTATGAGAAATCAATA
* *
210228 TTTTAGAAATAAAGCTGGGGTTGGAGTATCCCCTCGGAAATAA
64 TTTTAGAAATAAAGCCGGGGTTGAAGTATCCCCTCGGAAATAA
*
210271 CGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTGTGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCGA-GAAATAACGGAGTTGGAGTATCCCCGATTATGAGAAATCAATAT
*
210336 TTTAGAAATAAGGCCGGGGTTGAAGTATCCCC
65 TTTAGAAATAAAGCCGGGGTTGAAGTATCCCC
210368 GATTGTGAGA
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
105 3 0.03
106 3 0.03
107 83 0.93
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (106 bp):
CGGGGTTGGAGTATCCCCGAGAAATAACGGAGTTGGAGTATCCCCGATTATGAGAAATCAATATT
TTAGAAATAAAGCCGGGGTTGAAGTATCCCCTCGGAAATAA
Found at i:210278 original size:28 final size:28
Alignment explanation
Indices: 210244--210318 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
210234 AAATAAAGCT
**
210244 GGGGTTGGAGTATCCCCTCGGAAATAAC
1 GGGGTTGGAGTATCCCCGAGGAAATAAC
*
210272 GGGGTTGGAGTATCCCCGATGAAATAAC
1 GGGGTTGGAGTATCCCCGAGGAAATAAC
*
210300 GGAGTTGGAGTATCCCCGA
1 GGGGTTGGAGTATCCCCGA
210319 TTGTGAGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.21
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCGAGGAAATAAC
Found at i:210354 original size:158 final size:156
Alignment explanation
Indices: 210192--210523 Score: 497
Period size: 158 Copynumber: 2.1 Consensus size: 156
210182 TCGAAAATAA
* *
210192 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCTGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
*
210257 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAA-CGGAGTTGGAGTATCCCCGATT
66 -CCC-C-GAAATAACGGGGTTGGAGTATCCCCGACGAAATAATCGGAGTTGGAGTATCCCCGATT
**
210321 GT-GAGAAATCAATATTTTAGAAATAAGGC
128 GTGGAG-AATCAATATTTTAGAAATAAAAC
* * *
210350 CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
210415 CCCCGAAATAACGGGGTTGGAGTATCCCCGACGAAATAATCGGAGTTGGAGTATCCCCGATTGTG
66 CCCCGAAATAACGGGGTTGGAGTATCCCCGACGAAATAATCGGAGTTGGAGTATCCCCGATTGTG
*** * *
210480 GAGAATTGGTGTTTTAGAAATAAAAT
131 GAGAATCAATATTTTAGAAATAAAAC
210506 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
210524 TTGGAAATAA
Statistics
Matches: 158, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
155 34 0.22
156 58 0.37
157 6 0.04
158 60 0.38
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (156 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
CCCCGAAATAACGGGGTTGGAGTATCCCCGACGAAATAATCGGAGTTGGAGTATCCCCGATTGTG
GAGAATCAATATTTTAGAAATAAAAC
Found at i:210372 original size:51 final size:51
Alignment explanation
Indices: 210303--210420 Score: 209
Period size: 51 Copynumber: 2.3 Consensus size: 51
210293 AAATAACGGA
*
210303 GTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAGGCCGGG
1 GTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGG
* *
210354 GTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGG
1 GTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGG
210405 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
210421 AATAACGGGG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGG
Found at i:210432 original size:25 final size:26
Alignment explanation
Indices: 210401--210474 Score: 105
Period size: 25 Copynumber: 2.8 Consensus size: 26
210391 GAAATAAAGC
210401 CGGGGTTGGAGTATCCCCGAAATAA-
1 CGGGGTTGGAGTATCCCCGAAATAAT
210426 CGGGGTTGGAGTATCCCCGACGAAATAAT
1 CGGGGTTGGAGTAT-CCC--CGAAATAAT
*
210455 CGGAGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
210475 TTGTGGAGAA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
25 14 0.32
26 6 0.14
28 11 0.25
29 13 0.30
ACGTcount: A:0.26, C:0.22, G:0.32, T:0.20
Consensus pattern (26 bp):
CGGGGTTGGAGTATCCCCGAAATAAT
Found at i:210466 original size:29 final size:28
Alignment explanation
Indices: 210405--210474 Score: 101
Period size: 29 Copynumber: 2.6 Consensus size: 28
210395 TAAAGCCGGG
*
210405 GTTGGAGTAT-CCC--CGAAATAACGGG
1 GTTGGAGTATCCCCGACGAAATAACGGA
210430 GTTGGAGTATCCCCGACGAAATAATCGGA
1 GTTGGAGTATCCCCGACGAAATAA-CGGA
210459 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
210475 TTGTGGAGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
25 10 0.25
26 3 0.08
28 8 0.20
29 19 0.47
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (28 bp):
GTTGGAGTATCCCCGACGAAATAACGGA
Found at i:210476 original size:421 final size:421
Alignment explanation
Indices: 209771--210838 Score: 1816
Period size: 421 Copynumber: 2.5 Consensus size: 421
209761 GAAATAAGGC
* * * ** *
209771 CGGGGTTGAAGTATTCCCGATTGTGAGAAATCGATATTTTGGAAATAAAGCTAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCTGGGGTTGGAGTAT
209836 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTG
66 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTG
*
209901 TGAGAAATCAATATTTTAGAAATATGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATAT
131 TGAGAAATCAATATTTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATAT
209966 TTTGGAAATAAAGCCGGGGTTGGAGTATCCCCGAAATAACGGGGTTGGAGTATCCCCGACGAAAT
196 TTTGGAAATAAAGCCGGGGTTGGAGTATCCCCGAAATAACGGGGTTGGAGTATCCCCGACGAAAT
210031 AATCGGAGTTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAG
261 AATCGGAGTTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAG
210096 TATCCCCTTGGAAATAACGGGATTGGAGTATTCCCAATTATGAAAAATTAATGTTTTAAAAATAA
326 TATCCCCTTGGAAATAACGGGATTGGAGTATTCCCAATTATGAAAAATTAATGTTTTAAAAATAA
210161 AACCGGGGTTGGAGTATCCCCTCGAAAATAA
391 AACCGGGGTTGGAGTATCCCCTCGAAAATAA
*
210192 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCTGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCTGGGGTTGGAGTAT
210257 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTG
66 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTG
210322 TGAGAAATCAATATTTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATAT
131 TGAGAAATCAATATTTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATAT
210387 TTTGGAAATAAAGCCGGGGTTGGAGTATCCCCGAAATAACGGGGTTGGAGTATCCCCGACGAAAT
196 TTTGGAAATAAAGCCGGGGTTGGAGTATCCCCGAAATAACGGGGTTGGAGTATCCCCGACGAAAT
210452 AATCGGAGTTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAG
261 AATCGGAGTTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAG
* * *
210517 TATCCCCTTGGAAATAACGGGATTGGAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAA
326 TATCCCCTTGGAAATAACGGGATTGGAGTATTCCCAATTATGAAAAATTAATGTTTTAAAAATAA
*
210582 AACCGGGGTTGGAGTATCCCCTTGAAAATAA
391 AACCGGGGTTGGAGTATCCCCTCGAAAATAA
210613 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCTGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCTGGGGTTGGAGTAT
* * *
210678 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-ATTAATGGGGTTGGAGTATCCCCGATTG
66 CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTG
* *** * * *** * * * * *
210742 TGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAT-AGAAAATTAGT
131 TGAGAAATCAAT-ATTTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAG-AAATCAAT
* * *
210806 GTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
194 ATTTTGGAAATAAAGCCGGGGTTGGAGTATCCC
210839 TGATTATGGA
Statistics
Matches: 612, Mismatches: 33, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
420 35 0.06
421 577 0.94
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (421 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCTGGGGTTGGAGTAT
CCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGGAGTTGGAGTATCCCCGATTG
TGAGAAATCAATATTTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATAT
TTTGGAAATAAAGCCGGGGTTGGAGTATCCCCGAAATAACGGGGTTGGAGTATCCCCGACGAAAT
AATCGGAGTTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAG
TATCCCCTTGGAAATAACGGGATTGGAGTATTCCCAATTATGAAAAATTAATGTTTTAAAAATAA
AACCGGGGTTGGAGTATCCCCTCGAAAATAA
Found at i:210500 original size:105 final size:106
Alignment explanation
Indices: 210354--210553 Score: 269
Period size: 105 Copynumber: 1.9 Consensus size: 106
210344 TAAGGCCGGG
* *
210354 GTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCC
1 GTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
*
210419 -GAAATAACGGGGTTGGAGTATCCCCGACGAAATAATCGGA
66 TGAAATAACGGGATTGGAGTATCCCCGACGAAATAATCGGA
* *** * *
210459 GTTGGAGTATCCCCGATTGTG-GAGAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCC
1 GTTGAAGTATCCCCGATTGTGAGA-AATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCC
*
210523 CTTGGAAATAACGGGATTGGAGTATTCCCGA
65 C-T-GAAATAACGGGATTGGAGTATCCCCGA
210554 TTATGAAAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
104 2 0.02
105 54 0.67
108 25 0.31
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (106 bp):
GTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
TGAAATAACGGGATTGGAGTATCCCCGACGAAATAATCGGA
Found at i:210572 original size:79 final size:79
Alignment explanation
Indices: 210426--210712 Score: 378
Period size: 79 Copynumber: 3.6 Consensus size: 79
210416 CCCGAAATAA
*** * * * *
210426 CGGGGTTGGAGTATCCCCGACGAAATAATC-GGAGTTGGAGTATCCCCGATTGTGGAGAATTGGT
1 CGGGGTTGGAGTATCCCCTTGGAAATAA-CGGGA-TTGGAGTATCCCCGATTATGAAAAATTGAT
*
210490 GTTTTAGAAATAAAAT
64 GTTTTAGAAATAAAAC
*
210506 CGGGGTTGGAGTATCCCCTTGGAAATAACGGGATTGGAGTATTCCCGATTATGAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCTTGGAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGATGT
210571 TTTAGAAATAAAAC
66 TTTAGAAATAAAAC
* * * * *
210585 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATAT
1 CGGGGTTGGAGTATCCCCTTGGAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGATGT
* *
210650 TTTGGAAATAAAGC
66 TTTAGAAATAAAAC
* * *
210664 TGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTTGGAAATAACGGGATTGGAGTATCCCCGAT
210713 GATTAATGGG
Statistics
Matches: 186, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
79 158 0.85
80 28 0.15
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTTGGAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGATGT
TTTAGAAATAAAAC
Found at i:210731 original size:27 final size:28
Alignment explanation
Indices: 210664--210739 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 28
210654 GAAATAAAGC
***
210664 TGGGGTTGGAGTATCCCCTCGGAAATAA
1 TGGGGTTGGAGTATCCCCGATGAAATAA
* *
210692 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 TGGGGTTGGAGTATCCCCGATGAAATAA
210719 TGGGGTTGGAGTATCCCCGAT
1 TGGGGTTGGAGTATCCCCGAT
210740 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 24 0.57
28 18 0.43
ACGTcount: A:0.21, C:0.18, G:0.34, T:0.26
Consensus pattern (28 bp):
TGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:210737 original size:106 final size:107
Alignment explanation
Indices: 210585--210788 Score: 270
Period size: 107 Copynumber: 1.9 Consensus size: 107
210575 GAAATAAAAC
*
210585 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAAT-A
1 CGGGGTTGGAGTATCCCC-TGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGA
* *
210649 TTTTGGAAAT-AAAGCTGGGGTTGGAGTATCCCCTCGGAAATAA
65 TTTTGGAAATAAAATC-GGAGTTGGAGTATCCCCTCGGAAATAA
* * * * ** *
210692 CGGGGTTGGAGTATCCCC-GATGATTAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGT
1 CGGGGTTGGAGTATCCCCTGA-AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGA
210756 TTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
65 TTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
210789 GATTATAGAA
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
105 2 0.02
106 34 0.40
107 44 0.52
108 4 0.05
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (107 bp):
CGGGGTTGGAGTATCCCCTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGAT
TTTGGAAATAAAATCGGAGTTGGAGTATCCCCTCGGAAATAA
Found at i:210832 original size:51 final size:51
Alignment explanation
Indices: 210720--210853 Score: 180
Period size: 51 Copynumber: 2.6 Consensus size: 51
210710 GATGATTAAT
* * * *
210720 GGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATC
1 GGGGTTGGAGTATCCCCGATTATG-AAAATTAGTGTTTTTGAAAATAAAACC
*
210772 GGAGTTGGAGTATCCCCGATTATAGAAAATTAGTG-TTTTGAAAATAAAACC
1 GGGGTTGGAGTATCCCCGATTAT-GAAAATTAGTGTTTTTGAAAATAAAACC
*
210823 GGGGTTGGAGTATCCCTGATTATGGAAAATT
1 GGGGTTGGAGTATCCCCGATTAT-GAAAATT
210854 GAGAAACTTA
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
51 42 0.58
52 30 0.41
53 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.31
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTATGAAAATTAGTGTTTTTGAAAATAAAACC
Found at i:213222 original size:21 final size:21
Alignment explanation
Indices: 213196--213237 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
213186 TTCCTAGATG
213196 TATCGATACAAAGAATCGATA
1 TATCGATACAAAGAATCGATA
* *
213217 TATCGATACAATGTATCGATA
1 TATCGATACAAAGAATCGATA
213238 CACAGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (21 bp):
TATCGATACAAAGAATCGATA
Found at i:219303 original size:20 final size:19
Alignment explanation
Indices: 219274--219329 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
219264 TTGGGCATAT
*
219274 TGTATCGATACATTTCTTCA
1 TGTATCGATACATTTCCT-A
* *
219294 TGTATTGATACAATGTCCTA
1 TGTATCGATAC-ATTTCCTA
219314 TGTATCGATACATTTC
1 TGTATCGATACATTTC
219330 ACTTACGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 4 0.13
20 21 0.70
21 5 0.17
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (19 bp):
TGTATCGATACATTTCCTA
Found at i:219399 original size:19 final size:19
Alignment explanation
Indices: 219354--219409 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
219344 CTGCCACTTT
*
219354 CATGTATCGATACAATTGAG
1 CATGTATCGATACAA-TGAA
*
219374 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
219393 CATGTATTGATACAATG
1 CATGTATCGATACAATG
219410 TATCAATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:221028 original size:162 final size:162
Alignment explanation
Indices: 220476--221073 Score: 624
Period size: 161 Copynumber: 3.7 Consensus size: 162
220466 CTCTTTCTCC
* * *
220476 AAAATATCATTT-TGTATCTTAATGGAAAACCTAAAAAGATACAAAAAGTTTTGAAA-CCTTTTA
1 AAAATACCATTTCT-TACCTTAATGG-AAACCCAAAAAGATACAAAAAGTTTTGAAATCC-TTTA
* * *
220539 TGCCCCTACGAACCCCCAGAGGAATATAAAAGATTAAAAAAATGATTTATATTTATTTAAATTAT
63 TACCCCTACGAACCCCCATAGGAATATAAAAGATT-AAAAAATGATTAATATTTATTTAAATTAT
* *
220604 GAAAGTGTTAATTTTATTTTATTTGTTTATTTTTGA
127 GAAAGTGTTAATTTTATTTTATTTATTTATTTTTAA
* * * * * *
220640 AAAATATCATTTCATACCTTAATGGAAACTCGAAAAGATACGAAAAGTTATGAAATCCTTTATAC
1 AAAATACCATTTCTTACCTTAATGGAAACCCAAAAAGATACAAAAAGTTTTGAAATCCTTTATAC
* * * * * * *** * *
220705 CCATATGGATCCCTATAGGAATATAAAAGATTAAAAAA-GATTAA-AGTTTCTTTCGGTTGTGTA
66 CCCTACGAACCCCCATAGGAATATAAAAGATTAAAAAATGATTAATA-TTTATTTAAATTATGAA
* * *
220768 AGTATTAATTTTATTTTATTTATTCA-TTTTCA
130 AGTGTTAATTTTATTTTATTTATTTATTTTTAA
* ** *
220800 AAAATACC-TTTATATACCTTAATGGAGTCCCTAAAAGATACAAAAAGTTTTTGAAATCCTTTAT
1 AAAATACCATTTCT-TACCTTAATGGAAACCCAAAAAGATACAAAAAG-TTTTGAAATCCTTTAT
* * *
220864 ACCCCTA-TAGACCCCCATAGGAATATAAAAGA-TAAAAAATGATTAATTTTTATTTTAATTATG
64 ACCCCTACGA-ACCCCCATAGGAATATAAAAGATTAAAAAATGATTAATATTTATTTAAATTATG
** * *
220927 GGAGTGTTGATTTAATTTTATTTATTTATTTTTAA
128 AAAGTGTTAATTTTATTTTATTTATTTATTTTTAA
* ** * *
220962 AAAATGCCATTTCTTACCTTAATGGAAACCCAAAAAGATACGAAAGGGTTTTCG-ATTCTTTTAT
1 AAAATACCATTTCTTACCTTAATGGAAACCCAAAAAGATAC-AAAAAGTTTT-GAAATCCTTTAT
*
221026 ACCCCTACGAACTCCCATAGGAATATAAAAGATTAAAAAA--ATTAATAT
64 ACCCCTACGAACCCCCATAGGAATATAAAAGATTAAAAAATGATTAATAT
221074 GAAAATATCT
Statistics
Matches: 356, Mismatches: 64, Indels: 31
0.79 0.14 0.07
Matches are distributed among these distances:
159 3 0.01
160 48 0.13
161 125 0.35
162 82 0.23
163 74 0.21
164 24 0.07
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.37
Consensus pattern (162 bp):
AAAATACCATTTCTTACCTTAATGGAAACCCAAAAAGATACAAAAAGTTTTGAAATCCTTTATAC
CCCTACGAACCCCCATAGGAATATAAAAGATTAAAAAATGATTAATATTTATTTAAATTATGAAA
GTGTTAATTTTATTTTATTTATTTATTTTTAA
Found at i:221899 original size:16 final size:15
Alignment explanation
Indices: 221878--221926 Score: 59
Period size: 16 Copynumber: 3.4 Consensus size: 15
221868 TTTCTACCTA
*
221878 TTTTTTTCTATTTTCT
1 TTTTTTTCT-TTCTCT
221894 TTTTTTTCTTTCTC-
1 TTTTTTTCTTTCTCT
221908 TTTTTTTC--TCTCT
1 TTTTTTTCTTTCTCT
221921 TTTTTT
1 TTTTTT
221927 AGCTGACCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 4 0.13
13 6 0.19
14 8 0.26
15 4 0.13
16 9 0.29
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTTCTTTCTCT
Found at i:221914 original size:14 final size:14
Alignment explanation
Indices: 221878--221926 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 14
221868 TTTCTACCTA
*
221878 TTTTTTTCTATTTTC
1 TTTTTTTCT-TTCTC
221893 TTTTTTTTCTTTCTC
1 -TTTTTTTCTTTCTC
221908 TTTTTTTC--TCTC
1 TTTTTTTCTTTCTC
221920 TTTTTTT
1 TTTTTTT
221927 AGCTGACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 11 0.34
14 8 0.25
15 4 0.12
16 9 0.28
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTCTTTCTC
Found at i:222762 original size:18 final size:19
Alignment explanation
Indices: 222741--222776 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
222731 CAAAAACTCA
222741 TGAAAA-TGAATTAATTTT
1 TGAAAACTGAATTAATTTT
*
222759 TGAAAACTGATTTAATTT
1 TGAAAACTGAATTAATTT
222777 GAAATAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (19 bp):
TGAAAACTGAATTAATTTT
Found at i:222932 original size:165 final size:163
Alignment explanation
Indices: 222590--222967 Score: 489
Period size: 165 Copynumber: 2.3 Consensus size: 163
222580 AAAACGCATG
* *
222590 ATTTTTGAAAAA-TAATTTAATATAAAATAAATAATGATATTTTATGAATTTTAAAAATTAAGAA
1 ATTTTT-AAAAACTGATTTAAT-TGAAATAAATAATGATATTTTATGAATTTTAAAAATTAAGAA
* * * *
222654 CCAAAAAAATCCTCTCGAAAAAAATACGTAGTAGAAAATAATGTATTTCGAAAAAAAGAAATTTC
64 CCAAAAAAATCCTCTCCAAAAAAATACGAAGTAGAAAAAAACGTATTTCGAAAAAAAGAAATTTC
* *
222719 AAGGTAAAAATTCAAAAACTCATGAAAATGAATTA
129 AAGGAAAAAATTCAAAAACTCATGAAAATGAATGA
* *
222754 ATTTTTGAAAACTGATTTAATTTGAAATAAATAATGATATTTGATGAATTTTAAAAATT-AGAAA
1 ATTTTTAAAAACTGATTTAA-TTGAAATAAATAATGATATTTTATGAATTTTAAAAATTAAG-AA
** *
222818 TGAAGAAAAATCC-CTCCAAAAAAATTTACGAAGTAGAAAAAAACGTATTTC-AAAAAAATAAAT
64 CCAA-AAAAATCCTCTCCAAAAAAA--TACGAAGTAGAAAAAAACGTATTTCGAAAAAAAGAAAT
* *
222881 TTTAAGGAAAAAATTTAAAAACTCATGAAAATGAATGA
126 TTCAAGGAAAAAATTCAAAAACTCATGAAAATGAATGA
* * *
222919 ATTTTTAAAAACTGATTT-A-TGAAATAAATGATAATATTTTATAAATTTT
1 ATTTTTAAAAACTGATTTAATTGAAATAAATAATGATATTTTATGAATTTT
222968 TATATTTGAA
Statistics
Matches: 188, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
162 26 0.14
163 6 0.03
164 63 0.34
165 71 0.38
166 22 0.12
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (163 bp):
ATTTTTAAAAACTGATTTAATTGAAATAAATAATGATATTTTATGAATTTTAAAAATTAAGAACC
AAAAAAATCCTCTCCAAAAAAATACGAAGTAGAAAAAAACGTATTTCGAAAAAAAGAAATTTCAA
GGAAAAAATTCAAAAACTCATGAAAATGAATGA
Found at i:224727 original size:69 final size:68
Alignment explanation
Indices: 224644--224866 Score: 358
Period size: 69 Copynumber: 3.2 Consensus size: 68
224634 CAGAGGAATG
* *
224644 GGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGACTTAAATTTTGATTAGTTTAAA
1 GGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTAAA
224709 AAC
66 AAC
*
224712 GGGATTGGAGTATCCCCGACAATGATAATTTAGACAAAATAAGATTTAAATTTTGATGAGTTTAA
1 GGG-TTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTAA
224777 AAAC
65 AAAC
*
224781 AGGGTTGGAGTAT-CTCGAACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTA
1 -GGGTTGGAGTATCCCCG-ACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTA
224845 AAAAC
64 AAAAC
*
224850 GAGGTTAGAGTATCCCC
1 G-GGTTGGAGTATCCCC
224867 TCGGAAGAAT
Statistics
Matches: 143, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
68 7 0.05
69 131 0.92
70 5 0.03
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (68 bp):
GGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTAAA
AAC
Found at i:224958 original size:97 final size:97
Alignment explanation
Indices: 224816--225078 Score: 393
Period size: 97 Copynumber: 2.7 Consensus size: 97
224806 TAATTTGGAC
* *
224816 AAAATAAGATTTAAATTTTGATGAGTTTAAAAACGAGGTTAGAGTATCCCCTCGGAAGAATGGGG
1 AAAATAAGATTTAAATTTTGATAAGTTTAAAAACGAGGTTGGAGTATCCCCTCGGAAGAATGGGG
*** *
224881 TTGGAGTGTCCCCGATGTTGATAATTTAACCA
66 TTGGAGTGTCCCCGATGACAACAATTTAACCA
* * *
224913 AAAATAAGATTTAAATTTTGATAAGTTTAAAAATGGGGTTGGAGTATCCCCTCAGATA-AATGGG
1 AAAATAAGATTTAAATTTTGATAAGTTTAAAAACGAGGTTGGAGTATCCCCTCGGA-AGAATGGG
* *
224977 GTTGAAGTGTCCCCGATGACAACAATTTAACTA
65 GTTGGAGTGTCCCCGATGACAACAATTTAACCA
* *
225010 AAAATAAGATTTAAATTTGGATAAGTTTAAAAACGAGGTTGGAGTATCCCCTCGGAGGAATGGGG
1 AAAATAAGATTTAAATTTTGATAAGTTTAAAAACGAGGTTGGAGTATCCCCTCGGAAGAATGGGG
225075 TTGG
66 TTGG
225079 TGTATCCCTG
Statistics
Matches: 147, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
97 146 0.99
98 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (97 bp):
AAAATAAGATTTAAATTTTGATAAGTTTAAAAACGAGGTTGGAGTATCCCCTCGGAAGAATGGGG
TTGGAGTGTCCCCGATGACAACAATTTAACCA
Found at i:226115 original size:20 final size:20
Alignment explanation
Indices: 226090--226177 Score: 118
Period size: 20 Copynumber: 4.8 Consensus size: 20
226080 GTTACAAGCA
226090 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
226110 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
*
226130 ATGGATCGAT--AA---A--
1 ATGTATCGATACAATTCATC
226143 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
226163 ATGTATCGATACAAT
1 ATGTATCGATACAAT
226178 GTATCGATAC
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
13 9 0.15
15 3 0.05
18 3 0.05
20 44 0.75
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATTCATC
Found at i:226181 original size:13 final size:13
Alignment explanation
Indices: 226134--226193 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
226124 TTCATCATGG
*
226134 ATCGATAAAATGT
1 ATCGATACAATGT
226147 ATCGATACAA--T
1 ATCGATACAATGT
226158 -TC-AT-C-ATGT
1 ATCGATACAATGT
226167 ATCGATACAATGT
1 ATCGATACAATGT
*
226180 ATCGATACATTGT
1 ATCGATACAATGT
226193 A
1 A
226194 CCATGTATCG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.08
10 4 0.10
11 3 0.08
12 1 0.03
13 26 0.67
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (13 bp):
ATCGATACAATGT
Found at i:226199 original size:33 final size:33
Alignment explanation
Indices: 226110--226209 Score: 148
Period size: 33 Copynumber: 3.0 Consensus size: 33
226100 ACAATTCATC
* *
226110 ATGTATCGATACAATTCATCATGGATCGATAAA
1 ATGTATCGATACAATTCATCATGTATCGATACA
226143 ATGTATCGATACAATTCATCATGTATCGATACA
1 ATGTATCGATACAATTCATCATGTATCGATACA
* *
226176 ATGTATCGATAC-ATTGTACCATGTATCGATACA
1 ATGTATCGATACAATT-CATCATGTATCGATACA
226209 A
1 A
226210 ACAGTGGTAG
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
32 3 0.05
33 59 0.95
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACAATTCATCATGTATCGATACA
Found at i:226200 original size:53 final size:53
Alignment explanation
Indices: 226089--226209 Score: 165
Period size: 53 Copynumber: 2.3 Consensus size: 53
226079 CGTTACAAGC
**
226089 AATGTATCGATACAATTCATCATGTATCGATACAATTCATCATGGATCGATAA
1 AATGTATCGATACAATTCATCATGTATCGATACAATTCATCATACATCGATAA
* *
226142 AATGTATCGATACAATTCATCATGTATCGATACAATGT-ATCGATACATTG-TAC
1 AATGTATCGATACAATTCATCATGTATCGATACAAT-TCATC-ATACATCGATAA
*
226195 CATGTATCGATACAA
1 AATGTATCGATACAA
226210 ACAGTGGTAG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
53 55 0.90
54 6 0.10
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.32
Consensus pattern (53 bp):
AATGTATCGATACAATTCATCATGTATCGATACAATTCATCATACATCGATAA
Found at i:226282 original size:19 final size:19
Alignment explanation
Indices: 226239--226293 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
226229 TGCCAATCTT
**
226239 ATGTATCGATACAATTGTCC
1 ATGTATCGATACAA-TGAAC
226259 ATGTATCGATACAATGAAC
1 ATGTATCGATACAATGAAC
226278 ATGTATCGATACAATG
1 ATGTATCGATACAATG
226294 TATCGATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAATGAAC
Found at i:226296 original size:13 final size:13
Alignment explanation
Indices: 226278--226304 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
226268 TACAATGAAC
226278 ATGTATCGATACA
1 ATGTATCGATACA
226291 ATGTATCGATACA
1 ATGTATCGATACA
226304 A
1 A
226305 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:226890 original size:21 final size:22
Alignment explanation
Indices: 226846--226894 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
226836 AGTTTTCATT
*
226846 TTTCTCCCCCTTAATTAAAGAA
1 TTTCTCCCCCTTAATCAAAGAA
* *
226868 TTTCTCCCCTTTAATCGAA-AA
1 TTTCTCCCCCTTAATCAAAGAA
226889 TTTCTC
1 TTTCTC
226895 AAAAAATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.27, C:0.29, G:0.04, T:0.41
Consensus pattern (22 bp):
TTTCTCCCCCTTAATCAAAGAA
Found at i:228151 original size:20 final size:20
Alignment explanation
Indices: 228084--228157 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
228074 CAAAACCCTA
****
228084 AAATGTATCGATACACCTTC
1 AAATGTATCGATACATAACC
*
228104 AAATGTATCGATACATAATGC
1 AAATGTATCGATACATAA-CC
* *
228125 ACA-GTATCGATACATGACC
1 AAATGTATCGATACATAACC
228144 AAATGTATCGATAC
1 AAATGTATCGATAC
228158 TTGTTAAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.07
20 38 0.86
21 3 0.07
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (20 bp):
AAATGTATCGATACATAACC
Found at i:228258 original size:13 final size:13
Alignment explanation
Indices: 228240--228265 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
228230 ACACACAATA
228240 TGTATCGATACAT
1 TGTATCGATACAT
228253 TGTATCGATACAT
1 TGTATCGATACAT
228266 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:228281 original size:33 final size:32
Alignment explanation
Indices: 228220--228287 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
228210 CCTTAACTGT
*
228220 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
228252 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
228285 TTG
1 TTG
228288 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:236312 original size:22 final size:22
Alignment explanation
Indices: 236284--236326 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
236274 ATTAAAAGAT
*
236284 ATTTTTTTATTAAGGGGGAGAA
1 ATTTTTTGATTAAGGGGGAGAA
236306 ATTTTTTGATTAAGGGGGAGA
1 ATTTTTTGATTAAGGGGGAGA
236327 GAAAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (22 bp):
ATTTTTTGATTAAGGGGGAGAA
Found at i:236900 original size:13 final size:13
Alignment explanation
Indices: 236882--236906 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
236872 ATAATGCACA
236882 GTATCGATACATT
1 GTATCGATACATT
236895 GTATCGATACAT
1 GTATCGATACAT
236907 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:237025 original size:13 final size:13
Alignment explanation
Indices: 237007--237032 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
236997 ACACACAATA
237007 TGTATCGATACAT
1 TGTATCGATACAT
237020 TGTATCGATACAT
1 TGTATCGATACAT
237033 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:244138 original size:33 final size:33
Alignment explanation
Indices: 244096--244160 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
244086 TGTTACAAGC
*
244096 AATGTATCAATACAATT-CATCATGTATCGATAT
1 AATGTATCAATAC-ATTGCACCATGTATCGATAT
*
244129 AATGTATCAATACATTGTACCATGTATCGATA
1 AATGTATCAATACATTGCACCATGTATCGATA
244161 CAAACAATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 3 0.10
33 26 0.90
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.35
Consensus pattern (33 bp):
AATGTATCAATACATTGCACCATGTATCGATAT
Found at i:244221 original size:20 final size:20
Alignment explanation
Indices: 244196--244246 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
244186 CAATCTTATA
** *
244196 TATCGATACAATTGTCCGTG
1 TATCGATACAATTGAACATG
244216 TATCGATACAA-TGAACATG
1 TATCGATACAATTGAACATG
244235 TATCGATACAAT
1 TATCGATACAAT
244247 GTATCGATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (20 bp):
TATCGATACAATTGAACATG
Found at i:244250 original size:13 final size:13
Alignment explanation
Indices: 244232--244257 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
244222 TACAATGAAC
244232 ATGTATCGATACA
1 ATGTATCGATACA
244245 ATGTATCGATACA
1 ATGTATCGATACA
244258 TTTAAGGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:246521 original size:33 final size:33
Alignment explanation
Indices: 246484--246590 Score: 119
Period size: 33 Copynumber: 3.2 Consensus size: 33
246474 TTTTCATGTA
* *
246484 GCTTTGTTGTCTTTTTACAGCTTTGTCTTCGTT
1 GCTTTGCTATCTTTTTACAGCTTTGTCTTCGTT
* * **
246517 GCTTTGCTAT-TTTTTCCAACTTT-TCTTCATGCA
1 GCTTTGCTATCTTTTTACAGCTTTGTCTTC--GTT
246550 GCTTTGCTATCTTTTTACAGCTTTGTCTTCGTT
1 GCTTTGCTATCTTTTTACAGCTTTGTCTTCGTT
*
246583 GTTTTGCT
1 GCTTTGCT
246591 GTCATTCACG
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
31 5 0.08
32 11 0.19
33 27 0.46
34 11 0.19
35 5 0.08
ACGTcount: A:0.09, C:0.21, G:0.15, T:0.55
Consensus pattern (33 bp):
GCTTTGCTATCTTTTTACAGCTTTGTCTTCGTT
Found at i:246530 original size:66 final size:67
Alignment explanation
Indices: 246447--246590 Score: 211
Period size: 66 Copynumber: 2.2 Consensus size: 67
246437 TTGTTCTTCA
* * * * * *
246447 CGTTGCTTTG-TAGTTTTTTCTAGCTTTTTTTCATGTAGCTTTGTTGTCTTTTTACAGCTTTGTC
1 CGTTGCTTTGCTAGTTTTTTCCAACTTTTCTTCATGCAGCTTTGCTATCTTTTTACAGCTTTGTC
246511 TT
66 TT
246513 CGTTGCTTTGCTA-TTTTTTCCAACTTTTCTTCATGCAGCTTTGCTATCTTTTTACAGCTTTGTC
1 CGTTGCTTTGCTAGTTTTTTCCAACTTTTCTTCATGCAGCTTTGCTATCTTTTTACAGCTTTGTC
246577 TT
66 TT
*
246579 CGTTGTTTTGCT
1 CGTTGCTTTGCT
246591 GTCATTCACG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
66 68 0.97
67 2 0.03
ACGTcount: A:0.10, C:0.19, G:0.15, T:0.56
Consensus pattern (67 bp):
CGTTGCTTTGCTAGTTTTTTCCAACTTTTCTTCATGCAGCTTTGCTATCTTTTTACAGCTTTGTC
TT
Found at i:247642 original size:19 final size:20
Alignment explanation
Indices: 247614--247659 Score: 76
Period size: 19 Copynumber: 2.3 Consensus size: 20
247604 ACTTTTCTTT
247614 TTTTTATATTTGATTTTTT-A
1 TTTTT-TATTTGATTTTTTCA
247634 TTTTTTATTTGATTTTTTCA
1 TTTTTTATTTGATTTTTTCA
247654 TTTTTT
1 TTTTTT
247660 CGTTTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.78
Consensus pattern (20 bp):
TTTTTTATTTGATTTTTTCA
Found at i:247650 original size:20 final size:19
Alignment explanation
Indices: 247614--247659 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
247604 ACTTTTCTTT
*
247614 TTTTTATATTTGATTTTTTA
1 TTTTT-TATTTGATTTTTCA
247634 TTTTTTATTTGATTTTTTCA
1 TTTTTTATTTGA-TTTTTCA
247654 TTTTTT
1 TTTTTT
247660 CGTTTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.78
Consensus pattern (19 bp):
TTTTTTATTTGATTTTTCA
Found at i:248534 original size:52 final size:52
Alignment explanation
Indices: 248477--248965 Score: 484
Period size: 52 Copynumber: 9.4 Consensus size: 52
248467 AAGGCCTAGG
* * * * *
248477 CTTAAAAATAAGAAGAGTGCCAATGTGTTGATTTAAGGCTAGCTACATTGGA
1 CTTAAAAATGAGAAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* * ** * * *
248529 CTTAAAGATGAGAAGAGTGCCAACGTATTAATTCAAGGCCAGTGACATTGGG
1 CTTAAAAATGAGAAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* ** * **
248581 CTTAAAAATGAAAAG-GTGCCAATGTGCTGATTCAAGGCCAATGATATCAGA
1 CTTAAAAATGAGAAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* * *
248632 CTTAAAAATGAGAA-AGGTGTCAATGTGTTGATTCAAGGCTAGCGACATTGGA
1 CTTAAAAATGAGAAGA-GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* * * * * * * * *
248684 CTTTAACATGATAAG-GATGCTAATGTGCTGGTTCAAGGCCAACAACGTTGGG
1 CTTAAAAATGAGAAGAG-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* *
248736 CTTAAAAATGAGAAGAGTGCCAATGTGCTGATTCAAGGCTAGCGACATCGGA
1 CTTAAAAATGAGAAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* * **
248788 CTTAAAGATGCA-AAG-GTGCCAGTGTGCTGATTCAAGGCCAGCGATGTTGGA
1 CTTAAAAATG-AGAAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* * * * * *
248839 CTTAAACATGATAAGGGTGCTAATGTGCTAATTCAAGGCCAGCGACATTGGG
1 CTTAAAAATGAGAAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* * *
248891 TTTAAAAATGAAAAAAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
1 CTTAAAAATGAGAAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
* * *
248943 CTTAAAGATGACAAAAGTGCCAA
1 CTTAAAAATGAGAAGAGTGCCAA
248966 CAATTTGTGT
Statistics
Matches: 352, Mismatches: 77, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
50 1 0.00
51 84 0.24
52 265 0.75
53 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.24
Consensus pattern (52 bp):
CTTAAAAATGAGAAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGA
Found at i:248735 original size:155 final size:155
Alignment explanation
Indices: 248477--248965 Score: 570
Period size: 155 Copynumber: 3.1 Consensus size: 155
248467 AAGGCCTAGG
* * * * *
248477 CTTAAAAATAAG-AAGAGTGCCAATGTGTTGATTTAAGGCTAGCTACATTGGACTTAAAGATGAG
1 CTTAAAAATGAGAAAG-GTGCCAATGTGTTGATTCAAGGCTAGCGACATTGGACTTAAACATGAT
* * ** *
248541 AA-GAGTGCCAACGTATTAATTCAAGGCCAGTGACATTGGGCTTAAAAATGAAAAGGTGCCAATG
65 AAGGA-TGCTAATGTGCTAATTCAAGGCCAGCGACATTGGGCTTAAAAATGAAAAGGTGCCAATG
* *
248605 TGCTGATTCAAGGCCAATGATATCAGA
129 TGCTGATTCAAGGCCAACGACATCAGA
* *
248632 CTTAAAAATGAGAAAGGTGTCAATGTGTTGATTCAAGGCTAGCGACATTGGACTTTAACATGATA
1 CTTAAAAATGAGAAAGGTGCCAATGTGTTGATTCAAGGCTAGCGACATTGGACTTAAACATGATA
** * * * *
248697 AGGATGCTAATGTGCTGGTTCAAGGCCAACAACGTTGGGCTTAAAAATGAGAAGAGTGCCAATGT
66 AGGATGCTAATGTGCTAATTCAAGGCCAGCGACATTGGGCTTAAAAATGAAAAG-GTGCCAATGT
* * *
248762 GCTGATTCAAGGCTAGCGACATCGGA
130 GCTGATTCAAGGCCAACGACATCAGA
* * * * * **
248788 CTTAAAGATG-CAAAGGTGCCAGTGTGCTGATTCAAGGCCAGCGATGTTGGACTTAAACATGATA
1 CTTAAAAATGAGAAAGGTGCCAATGTGTTGATTCAAGGCTAGCGACATTGGACTTAAACATGATA
* * *
248852 AGGGTGCTAATGTGCTAATTCAAGGCCAGCGACATTGGGTTTAAAAATGAAAAAAGTGCCAATGT
66 AGGATGCTAATGTGCTAATTCAAGGCCAGCGACATTGGGCTTAAAAATG-AAAAGGTGCCAATGT
* **
248917 GCTGATTCAAGGCCAGCGACATTGGA
130 GCTGATTCAAGGCCAACGACATCAGA
* * *
248943 CTTAAAGATGACAAAAGTGCCAA
1 CTTAAAAATGAGAAAGGTGCCAA
248966 CAATTTGTGT
Statistics
Matches: 284, Mismatches: 45, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
155 226 0.80
156 58 0.20
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.24
Consensus pattern (155 bp):
CTTAAAAATGAGAAAGGTGCCAATGTGTTGATTCAAGGCTAGCGACATTGGACTTAAACATGATA
AGGATGCTAATGTGCTAATTCAAGGCCAGCGACATTGGGCTTAAAAATGAAAAGGTGCCAATGTG
CTGATTCAAGGCCAACGACATCAGA
Found at i:248918 original size:207 final size:208
Alignment explanation
Indices: 248478--248966 Score: 556
Period size: 207 Copynumber: 2.4 Consensus size: 208
248468 AGGCCTAGGC
* * * * *
248478 TTAAAAAT-AAGAAGAGTGCCAATGTGTTGATTTAAGGCTAGCTACATTGGACTTAAAGATGAGA
1 TTAAAAATGAA-AAAAGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
* * * *
248542 AGAGTGCCAACGTATTAATTCAAGGCCAGTGACATTGGGCTTAAAAATGAAAAGGTGCCAATGTG
65 AGAGTGCCAACGTACTAATTCAAGGCCAGCGACATCGGACTTAAAAATGAAAAGGTGCCAATGTG
* * * *
248607 CTGATTCAAGGCCAATGATATCAGACTTAAAAATGAGAAAGGTGTCAATGTGTTGATTCAAGGCT
130 CTGATTCAAGGCCAACGATATCAGACTTAAAAATGAGAAAGGTGTCAATGTGCTAATTCAAGGCC
248672 AGCGACATTGGACT
195 AGCGACATTGGACT
* * * * * * * * *
248686 TT-AACATG-ATAAGGATGCTAATGTGCTGGTTCAAGGCCAACAACGTTGGGCTTAAAAATGAGA
1 TTAAAAATGAAAAAAG-TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
* * * * * * *
248749 AGAGTGCCAATGTGCTGATTCAAGGCTAGCGACATCGGACTTAAAGATGCAAAGGTGCCAGTGTG
65 AGAGTGCCAACGTACTAATTCAAGGCCAGCGACATCGGACTTAAAAATGAAAAGGTGCCAATGTG
* * ** * * *
248814 CTGATTCAAGGCCAGCGATGTTGGACTTAAACATGATAAGGGTG-CTAATGTGCTAATTCAAGGC
130 CTGATTCAAGGCCAACGATATCAGACTTAAAAATGAGAAAGGTGTC-AATGTGCTAATTCAAGGC
*
248878 CAGCGACATTGG-GT
194 CAGCGACATTGGACT
* *
248892 TTAAAAATGAAAAAAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAA
1 TTAAAAATGAAAAAAGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGAA
*
248957 AAGTGCCAAC
66 GAGTGCCAAC
248967 AATTTGTGTG
Statistics
Matches: 226, Mismatches: 50, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
206 6 0.03
207 214 0.95
208 6 0.03
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.24
Consensus pattern (208 bp):
TTAAAAATGAAAAAAGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGAA
GAGTGCCAACGTACTAATTCAAGGCCAGCGACATCGGACTTAAAAATGAAAAGGTGCCAATGTGC
TGATTCAAGGCCAACGATATCAGACTTAAAAATGAGAAAGGTGTCAATGTGCTAATTCAAGGCCA
GCGACATTGGACT
Found at i:249069 original size:62 final size:62
Alignment explanation
Indices: 248959--249416 Score: 575
Period size: 62 Copynumber: 7.5 Consensus size: 62
248949 GATGACAAAA
* * * * *
248959 GTGCCAACAATTTGTGTGGGCTTTAAAAAGGAAAATGTGTCCTACTCTTTAAGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAG
* * *
249021 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAG
* *
249083 GTGCCACCAGCTTGTGT-GGCTTTAAAAAGGAAAAGACGTCCTACTCTTTGAGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAG
* * * **
249144 GTGCCACCAACTTGTGCGGGCTTTAAAAAGGAGAAGGTGTCCTGTTCTTTGAGGAC-GAAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTG-AAAG
* * * * * *
249206 GTGCTACCAACTTGTGTGTGCTTTAAAAAGG-AAATGCGTCCTACTATTTGAGGATTAAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAG
* * * * * * * * *
249267 ATGTCACCAACTTGTGTGGGCTTTAAAAAGGAAAAAGTGTCATGCCCTTTGACGATTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAG
* * *
249329 TTGCCACCAACTTATGTGGGCTTTAAAAAGGAAAA--TGTCCTACTCTTTGAGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAG
249389 GTGCCACCAACTTGTGTGGGCTTTAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAA
249417 GGGTGCACCT
Statistics
Matches: 339, Mismatches: 53, Indels: 10
0.84 0.13 0.02
Matches are distributed among these distances:
60 46 0.14
61 104 0.31
62 189 0.56
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (62 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAG
Found at i:249174 original size:123 final size:123
Alignment explanation
Indices: 248955--249416 Score: 633
Period size: 123 Copynumber: 3.8 Consensus size: 123
248945 TAAAGATGAC
* * * *
248955 AAAA-GTGCCAACAATTTGTGTGGGCTTTAAAAAGGAAAATGTGTCCTACTCTTTAAGGACTGAA
1 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAA-GCGTCCTACTCTTTGAGGACTGAA
**
249019 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCATCCTGCTCTTTGAGGACT
65 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACT
*
249078 AAAAGGTGCCACCAGCTTGTGT-GGCTTTAAAAAGGAAAAGACGTCCTACTCTTTGAGGACTGAA
1 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAG-CGTCCTACTCTTTGAGGACTGAA
* * * *
249142 AGGTGCCACCAACTTGTGCGGGCTTTAAAAAGGAGAAGGTGTCCTGTTCTTTGAGGACG
65 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACT
* * * * * *
249201 AAAAGGTGCTACCAACTTGTGTGTGCTTTAAAAAGGAAATGCGTCCTACTATTTGAGGATTAAAA
1 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGCGTCCTACTCTTTGAGGACTGAAA
* * * * * * *
249266 GATGTCACCAACTTGTGTGGGCTTTAAAAAGGAAAAAGTGTCATGCCCTTTGACGATT
66 GGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACT
* * * *
249324 GAAAGTTGCCACCAACTTATGTGGGCTTTAAAAAGGAAAA-TGTCCTACTCTTTGAGGACTGAAA
1 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGCGTCCTACTCTTTGAGGACTGAAA
249388 GGTGCCACCAACTTGTGTGGGCTTTAAAA
66 GGTGCCACCAACTTGTGTGGGCTTTAAAA
249417 GGGTGCACCT
Statistics
Matches: 295, Mismatches: 41, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
122 48 0.16
123 217 0.74
124 30 0.10
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (123 bp):
AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGCGTCCTACTCTTTGAGGACTGAAA
GGTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACT
Found at i:249291 original size:185 final size:183
Alignment explanation
Indices: 248959--249416 Score: 607
Period size: 185 Copynumber: 2.5 Consensus size: 183
248949 GATGACAAAA
* * *
248959 GTGCCAACAATTTGTGTGGGCTTTAAAAAGGAAAATGTGTCCTACTCTTTAAGGACTGAAAGGTG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGG-AAA-GTGTCCTACTCTTTGAGGACTGAAAGGTG
* * *
249024 CCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCA
64 CCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCATCCTACTATTTGAGGACTAAAAGATGCCA
* * * *
249089 CCAGCTTGTGTGGCTTTAAAAAGG-AAAAGACGTCCTACTCTTTGAGGACTGAAAG
129 CCAACTTGTGTGGCTTTAAAAAGGAAAAAG-CGTCATACCCTTTGACGACTGAAAG
* **
249144 GTGCCACCAACTTGTGCGGGCTTTAAAAAGGAGAAGGTGTCCTGTTCTTTGAGGAC-GAAAAGGT
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGA-AA-GTGTCCTACTCTTTGAGGACTG-AAAGGT
* * * * * *
249208 GCTACCAACTTGTGTGTGCTTTAAAAAGG-AAATGCGTCCTACTATTTGAGGATTAAAAGATGTC
63 GCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCATCCTACTATTTGAGGACTAAAAGATGCC
* * *
249272 ACCAACTTGTGTGGGCTTTAAAAAGGAAAAAGTGTCATGCCCTTTGACGATTGAAAG
128 ACCAACTTGTGT-GGCTTTAAAAAGGAAAAAGCGTCATACCCTTTGACGACTGAAAG
* * *
249329 TTGCCACCAACTTATGTGGGCTTTAAAAAGGAAAATGTCCTACTCTTTGAGGACTGAAAGGTGCC
1 GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAGTGTCCTACTCTTTGAGGACTGAAAGGTGCC
249394 ACCAACTTGTGTGGGCTTTAAAA
66 ACCAACTTGTGTGGGCTTTAAAA
249417 GGGTGCACCT
Statistics
Matches: 237, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
183 47 0.20
184 44 0.19
185 141 0.59
186 5 0.02
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (183 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAGTGTCCTACTCTTTGAGGACTGAAAGGTGCC
ACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCATCCTACTATTTGAGGACTAAAAGATGCCACC
AACTTGTGTGGCTTTAAAAAGGAAAAAGCGTCATACCCTTTGACGACTGAAAG
Found at i:249422 original size:30 final size:30
Alignment explanation
Indices: 249388--249451 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
249378 AGGACTGAAA
*
249388 GGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 GGTGCCACCAACTTGTGTGGGCTATAAAAG
* *
249418 GGTG-CACCTACTTGTGTGGGCTATAGAAG
1 GGTGCCACCAACTTGTGTGGGCTATAAAAG
249447 GGTGC
1 GGTGC
249452 TACTGACTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (30 bp):
GGTGCCACCAACTTGTGTGGGCTATAAAAG
Found at i:249570 original size:29 final size:28
Alignment explanation
Indices: 249444--250287 Score: 623
Period size: 28 Copynumber: 30.1 Consensus size: 28
249434 TGGGCTATAG
* * *
249444 AAGGGTGCTACTGACTCGTGGGCTTTGAA
1 AAGGATGCCACTGACTTGTGGGCTTTG-A
** **
249473 AAGG-TGTTACTGACTCATGGGCTTTCGA
1 AAGGATGCCACTGACTTGTGGGCTTT-GA
* *
249501 AAGG-TGCCCCTGA-TTCATGGGCTTTG-
1 AAGGATGCCACTGACTT-GTGGGCTTTGA
249527 -A--ATGCCACTGACTTGTGGGCTTTTGA
1 AAGGATGCCACTGACTTGTGGGC-TTTGA
* * *
249553 AAGCATGCCAATGACTTGTGGG-ATT--
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
249578 -----TGCCACTAACTTGTGGGCTTTGG
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
249601 AAGGATGCCACTAACTCGTGGGCTTT-A
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * *
249628 GAAGAATGCCACTAACTGGTGGGCTTTCG-
1 -AAGGATGCCACTGACTTGTGGGCTTT-GA
* *
249657 AAGGATGCCACTGACTCGTGGGCTTTAA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
249685 AAGGATGCCACTAACTCGTGGGCTTTTG-
1 AAGGATGCCACTGACTTGTGGGC-TTTGA
* * * * *
249713 AAGGTTGTCATTGACTCGTGGGCTTTTA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * * * * *
249741 AA-AAGTGCCATTAACTGGTAGGCTTTGG
1 AAGGA-TGCCACTGACTTGTGGGCTTTGA
* * * *
249769 AAGGATGCCACTAACTCGTGGGTTTTGG
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * ** *
249797 AAGGTTGCCACTAACAAGTGGGCTTTGG
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
249825 AAGGTTGCCACTGACTTGTGGGCTTTAAAA
1 AAGGATGCCACTGACTTGTGGGCTTT--GA
249855 AAGG-TGCCACTGACTTGTGGGCTTTTGA
1 AAGGATGCCACTGACTTGTGGGC-TTTGA
* * **
249883 AA-AAGTGCCACTAACTTGTGGGCTTCAA
1 AAGGA-TGCCACTGACTTGTGGGCTTTGA
* * *
249911 AAGAATGCCACTGACTTGTCGGCTTTAA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
249939 AAGGGTGCCACTGACTTGTGGGCTTTAA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
249967 AAGGGTGCCACTGACTTGTGGGCTTTAA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * *
249995 AAGAGGTGCCACTAACTTGTGGGCTTTAA
1 AAG-GATGCCACTGACTTGTGGGCTTTGA
*
250024 AAGGATGCTGCCACTGACTTGTGGGCTTTAA
1 AAGGA---TGCCACTGACTTGTGGGCTTTGA
* *
250055 AAAGATGCCACTGACTTGTGGGCTTTAA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * * *
250083 AAGGGGTGCCATTGACTTGTGAGCTTTAA
1 AA-GGATGCCACTGACTTGTGGGCTTTGA
* *
250112 AAGGATGTTGGCACTGACTTGTGGGCTTTGG
1 AAGGA---TGCCACTGACTTGTGGGCTTTGA
* * *
250143 AAGGTTGCCACTCACTTGTGGGCTGTGAA
1 AAGGATGCCACTGACTTGTGGGCTTTG-A
* * *
250172 AAGGTTGCCACAGACTTGTGGGCTTTTAA
1 AAGGATGCCACTGACTTGTGGGC-TTTGA
* *
250201 AAGGGGTGCCACTGACTTGTGGGCTTTAA
1 AA-GGATGCCACTGACTTGTGGGCTTTGA
*
250230 AAGGATACCACTGACTTGTGGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
250258 AAGGGTGCCATTGACTTGTGGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
250286 AA
1 AA
250288 AGAAAAAAGA
Statistics
Matches: 681, Mismatches: 92, Indels: 85
0.79 0.11 0.10
Matches are distributed among these distances:
20 15 0.02
21 2 0.00
24 13 0.02
25 7 0.01
27 8 0.01
28 415 0.61
29 145 0.21
30 28 0.04
31 48 0.07
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (28 bp):
AAGGATGCCACTGACTTGTGGGCTTTGA
Found at i:253030 original size:20 final size:20
Alignment explanation
Indices: 253005--253058 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
252995 CTACCACTGT
*
253005 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
253025 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
*
253045 TTGTATTGATACAT
1 TTGTATCGATACAT
253059 TGCTTCCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:259166 original size:20 final size:20
Alignment explanation
Indices: 259141--259196 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
259131 GAAATTTTCC
259141 AGAATGTATCGATACATTAA
1 AGAATGTATCGATACATTAA
* *
259161 AGAATGTATCAATACATTGA
1 AGAATGTATCGATACATTAA
259181 AGAATGTATCGATACA
1 AGAATGTATCGATACA
259197 ATATCCCTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (20 bp):
AGAATGTATCGATACATTAA
Found at i:261834 original size:20 final size:20
Alignment explanation
Indices: 261809--261862 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
261799 CTACCACTAT
261809 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGGTGA-A
* *
261829 TTGTATTGATACATGTTGAA
1 TTGTATCGATACATGGTGAA
261849 TTGTATCGATACAT
1 TTGTATCGATACAT
261863 CACTTCTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATGGTGAA
Found at i:264685 original size:69 final size:69
Alignment explanation
Indices: 264610--264832 Score: 347
Period size: 69 Copynumber: 3.2 Consensus size: 69
264600 TAGAGGAATA
* * *
264610 AGGTTGGAGTATCGCCGACAATGATAATTTCGACAAAATAAGACTTAAATTTTGATGAGTTTAAA
1 AGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTAAA
264675 AATG
66 AATG
* * *
264679 AGGTTGGAGTATCCCCGACAATGATAATTTGGATAAAATAAGATTTAAATTTTAATAAGTTTAAA
1 AGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTAAA
*
264744 AACG
66 AATG
* * *
264748 GGGTTGGAGTATCCCCAACAATGATAATTTGGACAAAATAAGATTTAAATTTTGACGAGTTTAAA
1 AGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTAAA
*
264813 AATA
66 AATG
264817 AGGTTGGAGTATCCCC
1 AGGTTGGAGTATCCCC
264833 TTGGAAGAAT
Statistics
Matches: 138, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 138 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (69 bp):
AGGTTGGAGTATCCCCGACAATGATAATTTGGACAAAATAAGATTTAAATTTTGATGAGTTTAAA
AATG
Found at i:264929 original size:99 final size:97
Alignment explanation
Indices: 264782--265027 Score: 316
Period size: 99 Copynumber: 2.5 Consensus size: 97
264772 TAATTTGGAC
*
264782 AAAATAAGATTTAAATTTTGACGAGTTTAAAAATAAGGTTGGAGTATCCCCTTGGAAGAATGGGA
1 AAAATAAGATTTAAATTTTGACGAGTTTAAAAATAAGGTTGGAGTATCCCCTCGGAAGAATGGGA
* **
264847 TTGGAGTGTCCCCGATGATGGCAATTTAATTA
66 TTGGAGTGTCCCCGATGATGACAATTTAACCA
* *
264879 AAAATAAGATTTAAATTTTGTTAC-AGCTTTAAAAAT-GGGATTGGAGTATCCCCTCGGAGGAAT
1 AAAATAAGATTTAAATTTTG--ACGAG-TTTAAAAATAAGG-TTGGAGTATCCCCTCGGAAGAAT
* *
264942 GGGGTTGGAGTGTCCCCGATGATGACAATTTAACCG
62 GGGATTGGAGTGTCCCCGATGATGACAATTTAACCA
* ** * * *
264978 AAAATAAGATTTAAATTTGGATAAGTTGAAAAATGAGGTTAGAGTATCCC
1 AAAATAAGATTTAAATTTTGACGAGTTTAAAAATAAGGTTGGAGTATCCC
265028 TTAGGAGGAA
Statistics
Matches: 130, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
97 40 0.31
98 8 0.06
99 82 0.63
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (97 bp):
AAAATAAGATTTAAATTTTGACGAGTTTAAAAATAAGGTTGGAGTATCCCCTCGGAAGAATGGGA
TTGGAGTGTCCCCGATGATGACAATTTAACCA
Found at i:265467 original size:33 final size:32
Alignment explanation
Indices: 265430--265544 Score: 126
Period size: 33 Copynumber: 3.5 Consensus size: 32
265420 TTTTCACATT
265430 GCTTTGCTATTTTTTCTAGCTTTTCTTCATGCA
1 GCTTTGCTATTTTTTCTAGCTTTTCTTCAT-CA
* *
265463 GCTTTGCTGTCTTTTT-TACAGCTTTGTCTTCATTA
1 GCTTTGCTAT-TTTTTCT--AGCTTT-TCTTCATCA
*
265498 -CTTTGCTATTTTTTCTAGCTTTTCTTCACACA
1 GCTTTGCTATTTTTTCTAGCTTTTCTTCA-TCA
*
265530 GCTTTGCTGTTTTTT
1 GCTTTGCTATTTTTT
265545 TACAGCTTTG
Statistics
Matches: 69, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
31 6 0.09
32 7 0.10
33 28 0.41
34 14 0.20
35 7 0.10
36 7 0.10
ACGTcount: A:0.11, C:0.21, G:0.12, T:0.56
Consensus pattern (32 bp):
GCTTTGCTATTTTTTCTAGCTTTTCTTCATCA
Found at i:265502 original size:34 final size:33
Alignment explanation
Indices: 265430--265558 Score: 124
Period size: 34 Copynumber: 3.8 Consensus size: 33
265420 TTTTCACATT
*
265430 GCTTTGCT-ATTTTTTCTAGCTTTTCTTCATGCA
1 GCTTTGCTGTTTTTTTCTAGCTTTTCTTCAT-CA
*
265463 GCTTTGCTGTCTTTTTTAC-AGCTTTGTCTTCATTA
1 GCTTTGCTGT-TTTTTT-CTAGCTTT-TCTTCATCA
* *
265498 -CTTTGCT-ATTTTTTCTAGCTTTTCTTCACACA
1 GCTTTGCTGTTTTTTTCTAGCTTTTCTTCA-TCA
265530 GCTTTGCTGTTTTTTTAC-AGCTTTGTCTT
1 GCTTTGCTGTTTTTTT-CTAGCTTT-TCTT
265559 TGTTGCTTTG
Statistics
Matches: 80, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
31 7 0.09
32 13 0.16
33 15 0.19
34 19 0.24
35 18 0.22
36 8 0.10
ACGTcount: A:0.12, C:0.21, G:0.12, T:0.55
Consensus pattern (33 bp):
GCTTTGCTGTTTTTTTCTAGCTTTTCTTCATCA
Found at i:265556 original size:66 final size:67
Alignment explanation
Indices: 265426--265572 Score: 242
Period size: 67 Copynumber: 2.2 Consensus size: 67
265416 TTGTTTTTCA
**
265426 CATTGCTTTGCTATTTTTTCTAGCTTTTCTTCATGCAGCTTTGCTGTCTTTTTTACAGCTTTGTC
1 CATTGCTTTGCTATTTTTTCTAGCTTTTCTTCACACAGCTTTGCTGTCTTTTTTACAGCTTTGTC
265491 TT
66 TT
*
265493 CATTACTTTGCTATTTTTTCTAGCTTTTCTTCACACAGCTTTGCTGT-TTTTTTACAGCTTTGTC
1 CATTGCTTTGCTATTTTTTCTAGCTTTTCTTCACACAGCTTTGCTGTCTTTTTTACAGCTTTGTC
265557 TT
66 TT
**
265559 TGTTGCTTTGCTAT
1 CATTGCTTTGCTAT
265573 CATTCACGTC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
66 30 0.41
67 44 0.59
ACGTcount: A:0.12, C:0.20, G:0.13, T:0.55
Consensus pattern (67 bp):
CATTGCTTTGCTATTTTTTCTAGCTTTTCTTCACACAGCTTTGCTGTCTTTTTTACAGCTTTGTC
TT
Found at i:265567 original size:33 final size:33
Alignment explanation
Indices: 265426--265570 Score: 113
Period size: 33 Copynumber: 4.4 Consensus size: 33
265416 TTGTTTTTCA
*
265426 CATTGCTTTGCT-ATTTTTT-CTAGCTTT-TCTT
1 CATTGCTTTGCTGTTTTTTTAC-AGCTTTGTCTT
*
265457 CATGCAGCTTTGCTGTCTTTTTTACAGCTTTGTCTT
1 CAT--TGCTTTGCTGT-TTTTTTACAGCTTTGTCTT
* *
265493 CATTACTTTGCT-ATTTTTT-CTAGCTTT-TCTT
1 CATTGCTTTGCTGTTTTTTTAC-AGCTTTGTCTT
**
265524 CACACAGCTTTGCTGTTTTTTTACAGCTTTGTCTT
1 --CATTGCTTTGCTGTTTTTTTACAGCTTTGTCTT
**
265559 TGTTGCTTTGCT
1 CATTGCTTTGCT
265571 ATCATTCACG
Statistics
Matches: 89, Mismatches: 13, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
31 8 0.09
32 12 0.13
33 25 0.28
34 19 0.21
35 17 0.19
36 8 0.09
ACGTcount: A:0.11, C:0.21, G:0.13, T:0.55
Consensus pattern (33 bp):
CATTGCTTTGCTGTTTTTTTACAGCTTTGTCTT
Found at i:266621 original size:19 final size:19
Alignment explanation
Indices: 266599--266661 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
266589 TTCTTTTTGA
266599 TATTTGATTTTTTATTTTT
1 TATTTGATTTTTTATTTTT
266618 TATTTGA-TTTTTATTTAATT
1 TATTTGATTTTTTATTT--TT
* *
266638 T-TTTAATTTTTAATTTTAT
1 TATTTGATTTTTTATTTT-T
266657 TATTT
1 TATTT
266662 TAATTTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 10 0.27
19 13 0.35
20 14 0.38
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (19 bp):
TATTTGATTTTTTATTTTT
Found at i:266627 original size:12 final size:12
Alignment explanation
Indices: 266612--266673 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 12
266602 TTGATTTTTT
*
266612 ATTTTTTATTTG
1 ATTTTTTATTTA
266624 A-TTTTTATTTA
1 ATTTTTTATTTA
266635 ATTTTTTAATTTTTA
1 ATTTTTT-A--TTTA
266650 ATTTTATTATTTTA
1 ATTTT-TTA-TTTA
*
266664 ATTTTATATT
1 ATTTTTTATT
266674 AAAAAAATCG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
11 10 0.23
12 8 0.19
13 3 0.07
14 10 0.23
15 10 0.23
16 2 0.05
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.73
Consensus pattern (12 bp):
ATTTTTTATTTA
Found at i:266655 original size:21 final size:19
Alignment explanation
Indices: 266607--266673 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 19
266597 GATATTTGAT
* *
266607 TTTTTATTTTTTA-TTTGA
1 TTTTTATTTATTATTTTAA
266625 TTTTTATTTAATT-TTTTAA
1 TTTTTATTT-ATTATTTTAA
266644 TTTTTAATTTTATTATTTTAA
1 TTTTT-A-TTTATTATTTTAA
266665 TTTTATATT
1 TTTT-TATT
266674 AAAAAAATCG
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
18 9 0.22
19 11 0.27
20 6 0.15
21 14 0.34
22 1 0.02
ACGTcount: A:0.24, C:0.00, G:0.01, T:0.75
Consensus pattern (19 bp):
TTTTTATTTATTATTTTAA
Found at i:266663 original size:14 final size:16
Alignment explanation
Indices: 266631--266670 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 16
266621 TTGATTTTTA
266631 TTTAATTTT-TTAATT
1 TTTAATTTTATTAATT
266646 TTTAATTTTATT-A-T
1 TTTAATTTTATTAATT
266660 TTTAATTTTAT
1 TTTAATTTTAT
266671 ATTAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 12 0.50
15 10 0.42
16 2 0.08
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTAATTTTATTAATT
Found at i:267122 original size:16 final size:15
Alignment explanation
Indices: 267101--267130 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
267091 TGATTGATTT
267101 TTTTATATATATTTGG
1 TTTTATATA-ATTTGG
267117 TTTTATATAATTTG
1 TTTTATATAATTTG
267131 ATATTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (15 bp):
TTTTATATAATTTGG
Found at i:267130 original size:38 final size:37
Alignment explanation
Indices: 267075--267146 Score: 101
Period size: 36 Copynumber: 1.9 Consensus size: 37
267065 AATGCTTATA
267075 TGGTCTTATATGAATTTGATTGATTTTTTTATATATATT
1 TGGTCTTATATGAATTTGA-T-ATTTTTTTATATATATT
* *
267114 TGGTTTTATAT-AATTTGATATTTTTTTGTATAT
1 TGGTCTTATATGAATTTGATATTTTTTTATATAT
267147 TTGGATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 13 0.42
37 1 0.03
38 7 0.23
39 10 0.32
ACGTcount: A:0.25, C:0.01, G:0.12, T:0.61
Consensus pattern (37 bp):
TGGTCTTATATGAATTTGATATTTTTTTATATATATT
Found at i:267145 original size:20 final size:20
Alignment explanation
Indices: 267117--267154 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
267107 ATATATTTGG
267117 TTTTATATAATTT-GATATTT
1 TTTTATAT-ATTTGGATATTT
*
267137 TTTTGTATATTTGGATAT
1 TTTTATATATTTGGATAT
267155 ATGTAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (20 bp):
TTTTATATATTTGGATATTT
Found at i:267388 original size:54 final size:54
Alignment explanation
Indices: 267317--267419 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 54
267307 ATGATGTATT
* * **
267317 AATACAATGAATTGATACTTTGAATAATGTATCAATGCATTTCTAGAATATATC
1 AATACAATGAATCGATACTTTGAATAATGCATCAACACATTTCTAGAATATATC
* * *
267371 AATACAATGTATCGATACTTTGAATTATGCATCAACATATTTCTAGAAT
1 AATACAATGAATCGATACTTTGAATAATGCATCAACACATTTCTAGAAT
267420 GTATATATAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.37
Consensus pattern (54 bp):
AATACAATGAATCGATACTTTGAATAATGCATCAACACATTTCTAGAATATATC
Found at i:267430 original size:54 final size:54
Alignment explanation
Indices: 267310--267430 Score: 138
Period size: 54 Copynumber: 2.2 Consensus size: 54
267300 ACTTCAAATG
* * **
267310 ATGTAT-TAATACAATGAATTGATACTTTGAATAATGTATCAATGCATTTCTAGA
1 ATGTATAT-ATACAATGAATCGATACTTTGAATAATGCATCAACACATTTCTAGA
* * * *
267364 ATATATCA-ATACAATGTATCGATACTTTGAATTATGCATCAACATATTTCTAGA
1 ATGTAT-ATATACAATGAATCGATACTTTGAATAATGCATCAACACATTTCTAGA
267418 ATGTATATATACA
1 ATGTATATATACA
267431 CTTAATAATG
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
53 1 0.02
54 54 0.98
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.38
Consensus pattern (54 bp):
ATGTATATATACAATGAATCGATACTTTGAATAATGCATCAACACATTTCTAGA
Found at i:269866 original size:50 final size:51
Alignment explanation
Indices: 269761--269906 Score: 154
Period size: 50 Copynumber: 2.9 Consensus size: 51
269751 CATTCATGTT
* * * * *
269761 TTTATTTCTAAAATACC-GATTTTCCACCATCAAGGATACTCCAACCCCGGA
1 TTTATTTCCAAAACACCAAATTTT-CACAATCGAGGATACTCCAACCCCGGA
* ** * * *
269812 TTTATTTCTAAAACATTAATTTTTCCCAGTCG-GGATACTCCAACCCC-GA
1 TTTATTTCCAAAACACCAAATTTTCACAATCGAGGATACTCCAACCCCGGA
269861 TTTTATTTCCAAAACACCAAATTTTCACAATCGAGGATACTCCAAC
1 -TTTATTTCCAAAACACCAAATTTTCACAATCGAGGATACTCCAAC
269907 GTCGTTATTT
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
49 2 0.03
50 41 0.53
51 30 0.39
52 4 0.05
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (51 bp):
TTTATTTCCAAAACACCAAATTTTCACAATCGAGGATACTCCAACCCCGGA
Found at i:269929 original size:79 final size:80
Alignment explanation
Indices: 269843--270028 Score: 286
Period size: 80 Copynumber: 2.3 Consensus size: 80
269833 TTTCCCAGTC
269843 GGGATACTCCAACCCC-GATTTTATTTCCAAAACACCAAATTTTCACAATC-GAGGATACTCCAA
1 GGGATACTCCAACCCCAG-TTTTATTTCCAAAACACCAAATTTTCACAATCGGAGGATACTCCAA
**
269906 CGTCGTTATTTTTCAA
65 CCCCGTTATTTTTCAA
* * *
269922 GGGATACTCTAACTCCAGTTTTATTTCCAAAACACCAAATTTTCACAATCGGGGGATACTCCAAC
1 GGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAAATTTTCACAATCGGAGGATACTCCAAC
*
269987 CCCGTTATTTTTTAA
66 CCCGTTATTTTTCAA
*
270002 GGAATACTCCAACCCCAGTTTTATTTC
1 GGGATACTCCAACCCCAGTTTTATTTC
270029 TAAATCACTG
Statistics
Matches: 96, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
79 46 0.48
80 50 0.52
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (80 bp):
GGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAAATTTTCACAATCGGAGGATACTCCAAC
CCCGTTATTTTTCAA
Found at i:270186 original size:50 final size:51
Alignment explanation
Indices: 270101--270248 Score: 147
Period size: 50 Copynumber: 2.9 Consensus size: 51
270091 TGACTCTGAT
** * * **
270101 TTTTATTTTTAAAACATCAAATTTTCACAATCGAGGATATTTTAACCCT-GG
1 TTTTATTTCCAAAACATCAAATTTCCACAATCGAGGATACTCCAA-CCTAGG
* *
270152 TTTTATTTCCAAAATATC-AATTTCCATAATCGAGGATACTCCAACCTAGG
1 TTTTATTTCCAAAACATCAAATTTCCACAATCGAGGATACTCCAACCTAGG
* * * * * *
270202 TTTTATTTCCAAAACACCGATTTTCCACCATCAAGGATACCCCAACC
1 TTTTATTTCCAAAACATCAAATTTCCACAATCGAGGATACTCCAACC
270249 CCGTTATTTT
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 3 0.04
50 39 0.49
51 38 0.47
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (51 bp):
TTTTATTTCCAAAACATCAAATTTCCACAATCGAGGATACTCCAACCTAGG
Found at i:270247 original size:51 final size:50
Alignment explanation
Indices: 270150--270248 Score: 126
Period size: 51 Copynumber: 2.0 Consensus size: 50
270140 TTTTAACCCT
* * * * *
270150 GGTTTTATTTCCAAAATATCAATTTCCATAATCGAGGATACTCCAACCTA
1 GGTTTTATTTCCAAAACACCAATTTCCACAATCAAGGATACCCCAACCTA
* *
270200 GGTTTTATTTCCAAAACACCGATTTTCCACCATCAAGGATACCCCAACC
1 GGTTTTATTTCCAAAACACC-AATTTCCACAATCAAGGATACCCCAACC
270249 CCGTTATTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 18 0.44
51 23 0.56
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.30
Consensus pattern (50 bp):
GGTTTTATTTCCAAAACACCAATTTCCACAATCAAGGATACCCCAACCTA
Found at i:270381 original size:78 final size:78
Alignment explanation
Indices: 270185--270430 Score: 300
Period size: 79 Copynumber: 3.1 Consensus size: 78
270175 CCATAATCGA
* *
270185 GGATACTCCAA-CCTAGGTTTTATTTCCAAAACACCGATTTTCCACCATCAAGGATACCCCAACC
1 GGATACTCCAACCCT-GGTTTTATTTCCAAAACACCGATTTTCCA-CATCAGGGATACTCCAACC
* **
270249 CCGTTATTTTCAAAA
64 CCATTATTTTCAAGG
* * * * * *
270264 GGACACTCTAACCCCGATTTTATTTCCAAAACACCGATTTTCTACAATCTGGGATACTCCAA-CC
1 GGATACTCCAACCCTGGTTTTATTTCCAAAACACCGATTTTCCAC-ATCAGGGATACTCCAACCC
270328 CATTATTTTCAAGG
65 CATTATTTTCAAGG
* * *
270342 GGATACTCCAACCCTGGTTTTATTTCTAAAAGACCGATTTTCCATCATCGGGGATACTCCAACCC
1 GGATACTCCAACCCTGGTTTTATTTCCAAAACACCGATTTTCCA-CATCAGGGATACTCCAACCC
270407 CATTA-TTTCAAAGG
65 CATTATTTTC-AAGG
270421 GGATACTCCA
1 GGATACTCCA
270431 CCCCCATTTT
Statistics
Matches: 143, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
78 70 0.49
79 71 0.50
80 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (78 bp):
GGATACTCCAACCCTGGTTTTATTTCCAAAACACCGATTTTCCACATCAGGGATACTCCAACCCC
ATTATTTTCAAGG
Found at i:273126 original size:19 final size:21
Alignment explanation
Indices: 273083--273134 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
273073 TTCAATAATT
*
273083 TGTATCGATACATTCAGTAAA
1 TGTATCGATACATTAAGTAAA
273104 TGTATCGATACA-TAAGT-AA
1 TGTATCGATACATTAAGTAAA
273123 TGTATCGATACA
1 TGTATCGATACA
273135 GTGTATCGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 14 0.47
20 4 0.13
21 12 0.40
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTAAGTAAA
Found at i:273206 original size:13 final size:13
Alignment explanation
Indices: 273188--273212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
273178 TTTGTAGAAC
273188 GTATCGATACATT
1 GTATCGATACATT
273201 GTATCGATACAT
1 GTATCGATACAT
273213 CGATCTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:275629 original size:51 final size:50
Alignment explanation
Indices: 275572--275754 Score: 228
Period size: 51 Copynumber: 3.6 Consensus size: 50
275562 TTAAGTTTCT
* *
275572 CAATTTTTCATAATCGGGGATACTCCAACCCAGGTTTTATTTCTAAAACAC
1 CAATTTTCCACAATCGGGGATACTCCAACCC-GGTTTTATTTCTAAAACAC
*
275623 TAATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACAC
1 CAATTTTCCACAATCGGGGATACTCCAA-CCCGGTTTTATTTCT-AAAACAC
** * *
275674 CAATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAACAC
1 CAATTTTCC-ACAATCGGGGATACTCCAAC-CCGGTTTTA-TTTCTAAAACAC
275727 CAA-TTT-CACAATCGGGGATACTCCAACC
1 CAATTTTCCACAATCGGGGATACTCCAACC
275755 TCATTAATCA
Statistics
Matches: 116, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
49 1 0.01
50 19 0.16
51 52 0.45
52 31 0.27
53 13 0.11
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (50 bp):
CAATTTTCCACAATCGGGGATACTCCAACCCGGTTTTATTTCTAAAACAC
Found at i:275713 original size:52 final size:50
Alignment explanation
Indices: 275576--275754 Score: 222
Period size: 52 Copynumber: 3.5 Consensus size: 50
275566 GTTTCTCAAT
* * *
275576 TTTTCATAATCGGGGATACTCCAACCCAGGTTTTA-TTTCTAAAACACTAA
1 TTTTCCTAATCGGGGATACTCCAACCC-GGTTTTATTTTCAAAAACACCAA
*
275626 TTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAA
1 TTTTCC-TAATCGGGGATACTCCAA-CCCGGTTTTATTTTCAAAAACACCAA
*
275677 TTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAACACCAA
1 TTTTCC--TAATCGGGGATACTCCAAC-CCGGTTTTATTTTCAAAAACACCAA
275730 -TTTCAC-AATCGGGGATACTCCAACC
1 TTTTC-CTAATCGGGGATACTCCAACC
275755 TCATTAATCA
Statistics
Matches: 116, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
49 1 0.01
50 23 0.20
51 40 0.34
52 41 0.35
53 11 0.09
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (50 bp):
TTTTCCTAATCGGGGATACTCCAACCCGGTTTTATTTTCAAAAACACCAA
Found at i:275938 original size:79 final size:80
Alignment explanation
Indices: 275767--275939 Score: 251
Period size: 79 Copynumber: 2.2 Consensus size: 80
275757 ATTAATCATT
* * **
275767 AGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTTCAACCCCCGGTTTTATTTCTAAAACGT
1 AGGGATACTCCAACCCCATTATTCTCGAGGGGATACTTCAACCCCCGGTTTTATTTCTAAAACAC
* *
275832 CAATTTTTCATAATC
66 CAATTCTCCATAATC
275847 AGGGATACTCCAACCCCATTATTCTCGAGGGGATAC-TCGAA-CCCCGGTTTTATTTCTAAAACA
1 AGGGATACTCCAACCCCATTATTCTCGAGGGGATACTTC-AACCCCCGGTTTTATTTCTAAAACA
275910 CCAATTCTCCATAATC
65 CCAATTCTCCATAATC
* *
275926 GGGGATATTCCAAC
1 AGGGATACTCCAAC
275940 TCCGATTTTA
Statistics
Matches: 84, Mismatches: 8, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
79 48 0.57
80 36 0.43
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (80 bp):
AGGGATACTCCAACCCCATTATTCTCGAGGGGATACTTCAACCCCCGGTTTTATTTCTAAAACAC
CAATTCTCCATAATC
Found at i:276059 original size:237 final size:238
Alignment explanation
Indices: 275638--276139 Score: 658
Period size: 237 Copynumber: 2.1 Consensus size: 238
275628 TTCCACAATC
* *
275638 GGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTCCTTTAATCGGGGATACTCCA
1 GGGGATACTCCAACCCCGGTTTTATTTCTCAAAACACCAATTCTCCTATAATCGGGGATACTCCA
* *
275702 ACTCCGATTTTATTTTCAAAAACACCAATTTCACAATCGGGGATACTCCAACCTCATTAATCATT
66 ACTCCGATTTTATTTTCAAAAACACCAATTTCACAATCGAGGATACTCCAACCTCATTAATCATC
* ** * * * * *
275767 AGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTTCAACCCCCGGTTTTATTTCTAAAACGT
131 AGGGATACTCAAACCCCGTTAACTCCGAGGGGATACTCCAACCCCCGGCTTTATTTCCAAAACAT
*
275832 CAATTTTTCATAATCAG-GGATACTCCAACCCCATTA-TTCTCGA
196 CAATTTCTCATAAT-AGAGGATACTCCAACCCCATTATTTCT-GA
* *
275875 GGGGATACTCGAACCCCGGTTTTATTTCT-AAAACACCAATTCTCC-ATAATCGGGGATATTCCA
1 GGGGATACTCCAACCCCGGTTTTATTTCTCAAAACACCAATTCTCCTATAATCGGGGATACTCCA
* * * *
275938 ACTCCGATTTTATTTTC-AAAACACTAGTTTTTCACAATCGAGGATACTCCAACCTCGTTATTTC
66 ACTCCGATTTTATTTTCAAAAACACCA--ATTTCACAATCGAGGATACTCCAACCTCATTA-ATC
* *
276002 ATCGGGGATACTCAAACCCCGTTAACTCCGAGGGGATACTCCAA-CCCTGGCTTTATTTCCAAAA
128 ATCAGGGATACTCAAACCCCGTTAACTCCGAGGGGATACTCCAACCCCCGGCTTTATTTCCAAAA
* ** *
276066 TATTGATTTCTCATAATTGAGGATACTCCAACCCCATTATTTCTGA
193 CATCAATTTCTCATAATAGAGGATACTCCAACCCCATTATTTCTGA
* * *
276112 GGGGATACTCCAATCTCGATTTTATTTC
1 GGGGATACTCCAACCCCGGTTTTATTTC
276140 CTAATCATCG
Statistics
Matches: 230, Mismatches: 29, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
235 8 0.03
236 34 0.15
237 144 0.63
238 44 0.19
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (238 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTCAAAACACCAATTCTCCTATAATCGGGGATACTCCA
ACTCCGATTTTATTTTCAAAAACACCAATTTCACAATCGAGGATACTCCAACCTCATTAATCATC
AGGGATACTCAAACCCCGTTAACTCCGAGGGGATACTCCAACCCCCGGCTTTATTTCCAAAACAT
CAATTTCTCATAATAGAGGATACTCCAACCCCATTATTTCTGA
Found at i:276136 original size:79 final size:77
Alignment explanation
Indices: 276007--276238 Score: 198
Period size: 79 Copynumber: 2.9 Consensus size: 77
275997 ATTTCATCGG
** * * *
276007 GGATACTCAAACCCCGTTAACTCCGAGGGGATACTCCAACCCTGGCTTTATTTCCAAAATATTGA
1 GGATACTCAAACCCCGTTATTTCTGAGGGGATACTCCAA--CTCGTTTTATTTCCAAAATATTGA
**
276072 TTTCTCATAATTGA
64 TTTCTCATAACCGA
* * * *
276086 GGATACTCCAACCCCATTATTTCTGAGGGGATACTCCAATCTCGATTTTATTTCC-TAATCATCG
1 GGATACTCAAACCCCGTTATTTCTGAGGGGATACTCCAA-CTCG-TTTTATTTCCAAAAT-ATTG
* * *
276150 ATTTTTCACAACCGG
63 ATTTCTCATAACCGA
* * * *
276165 GGATACTCAAACCCCGTTATTT-TCAAGGGGATACTCCAACCTTGTTATTATCTCCAAAACATTA
1 GGATACTCAAACCCCGTTATTTCT-GAGGGGATACTCCAA-CTCGTT-TTATTTCCAAAATATT-
*
276229 AATTTCTCAT
62 GATTTCTCAT
276239 TGGGAAATAT
Statistics
Matches: 120, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
78 9 0.08
79 102 0.85
80 9 0.08
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (77 bp):
GGATACTCAAACCCCGTTATTTCTGAGGGGATACTCCAACTCGTTTTATTTCCAAAATATTGATT
TCTCATAACCGA
Found at i:288602 original size:1 final size:1
Alignment explanation
Indices: 288596--288662 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
288586 ATTCCTTTTC
* * * * * * * * *
288596 AAAAAAAAACACAAAAAAAAACAAAAAAATAAAAAATAAAAAAACAAAGAAAAAAGAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
288661 AA
1 AA
288663 GAAGAATCTG
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.87, C:0.06, G:0.04, T:0.03
Consensus pattern (1 bp):
A
Found at i:288663 original size:19 final size:17
Alignment explanation
Indices: 288596--288665 Score: 68
Period size: 19 Copynumber: 3.8 Consensus size: 17
288586 ATTCCTTTTC
* *
288596 AAAAAAAAACACAAAAA
1 AAAAAAAAAAAGAAAAA
*
288613 AAAACAAAAAAATAAAAA
1 AAAA-AAAAAAAGAAAAA
288631 ATAAAAAAACAAAGAAAAA
1 A-AAAAAAA-AAAGAAAAA
288650 AGAGAAAAAAAAAGAA
1 A-A-AAAAAAAAAGAA
288666 GAATCTGCTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 4 0.09
18 16 0.36
19 19 0.42
20 6 0.13
ACGTcount: A:0.86, C:0.06, G:0.06, T:0.03
Consensus pattern (17 bp):
AAAAAAAAAAAGAAAAA
Found at i:288664 original size:12 final size:11
Alignment explanation
Indices: 288596--288662 Score: 73
Period size: 12 Copynumber: 5.7 Consensus size: 11
288586 ATTCCTTTTC
288596 AAAAAAAAACA
1 AAAAAAAAACA
288607 CAAAAAAAAACA
1 -AAAAAAAAACA
288619 AAAAAATAAA-A
1 AAAAAA-AAACA
288630 AATAAAAAAACA
1 AA-AAAAAAACA
*
288642 AAGAAAAAAGAGA
1 AA-AAAAAA-ACA
288655 AAAAAAAA
1 AAAAAAAA
288663 GAAGAATCTG
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
11 12 0.24
12 33 0.67
13 4 0.08
ACGTcount: A:0.87, C:0.06, G:0.04, T:0.03
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:289797 original size:55 final size:55
Alignment explanation
Indices: 289732--290261 Score: 602
Period size: 55 Copynumber: 9.4 Consensus size: 55
289722 TCTCTTTCGC
289732 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
289786 CCTTTCAGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** *
289841 CCTTTCAGTCCTCAAAGAATAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
289896 -CTTCCCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCA
1 CCTT-TCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* ** * *
289951 -TTTTCCAGTCCTCAAAGAGCAAAATGCCTTTCAAAGCCCACACGAGTTGGTGGCA
1 CCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
290006 -TTTTCCAGTCCTCAAAGAGCAAGATGCCTTTCAAGGCCCACACGAGTTGGTGGCA
1 CCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
290061 -TTTTCTAGTCCTTAAAGAGCAGGACGCCTTCCAAAGCCCACATAAGTTGGTGGCA
1 CCTTTC-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** *
290116 TTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGA--C--GC-CTTT-CAAAGCCCACACAAGTTGGTGGCA
* * * **
290177 CCTTCCAGTCCTCTAAGAGTAGGACGCCTTTCCTTTTCAAAGCCCACATGAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACG-----CC-TTTCAAAGCCCACACAAGTTGGTGGCA
* *
290238 CTTTTTAGTCCTCAAAGAGCAGGA
1 CCTTTCAGTCCTCAAAGAGCAGGA
290262 TGCACTTTAT
Statistics
Matches: 420, Mismatches: 39, Indels: 27
0.86 0.08 0.06
Matches are distributed among these distances:
54 9 0.02
55 312 0.74
56 5 0.01
57 1 0.00
59 2 0.00
60 3 0.01
61 84 0.20
62 4 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:289818 original size:26 final size:26
Alignment explanation
Indices: 289786--289871 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
289776 GTTGGTGGCA
289786 CCTTTCAGTCCTCAAAGAGTAGGACG
1 CCTTTCAGTCCTCAAAGAGTAGGACG
* * * *
289812 CCTTTCAAAGCCCACACAAGTTGGT-GG-CA
1 CCTTTC--AGTCCTCA-AAG--AGTAGGACG
*
289841 CCTTTCAGTCCTCAAAGAATAGGACG
1 CCTTTCAGTCCTCAAAGAGTAGGACG
289867 CCTTT
1 CCTTT
289872 TAAAGCCCAC
Statistics
Matches: 44, Mismatches: 9, Indels: 14
0.66 0.13 0.21
Matches are distributed among these distances:
24 1 0.02
25 2 0.05
26 15 0.34
27 6 0.14
28 6 0.14
29 10 0.23
30 2 0.05
31 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
CCTTTCAGTCCTCAAAGAGTAGGACG
Found at i:290017 original size:165 final size:164
Alignment explanation
Indices: 289736--290261 Score: 667
Period size: 165 Copynumber: 3.1 Consensus size: 164
289726 TTTCGCCCTT
*
289736 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAA
* * *
289801 AGAGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAATAGGA
65 AGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGTAGGA
* *
289865 CGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCC
129 CGCCTTTTAAAGCCCACACGAGTTGGTGGCACTTTC
* * *
289901 CAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCATTTTCCAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAA
** * * * * *
289966 AGAGCAAAATGCCTTTCAAAGCCCACACGAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGAT
65 AGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGAC
* * *
290031 GCCTTTCAAGGCCCACACGAGTTGGTGGCATTTTC
130 GCCTTTTAAAGCCCACACGAGTTGGTGGCACTTTC
* * *
290066 TAGTCCTTAAAGAGCAGGACGCCTTCCAAAGCCCACATAAGTTGGTGGCATTTTTCAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAA
* *
290131 AGAGCAGGATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCTAAGAG
65 AGAGCAGGATG----C-CTTT-CAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAG
* *
290196 TAGGACGCCTTTCCTTTTCAAAGCCCACATGAGTTGGTGGCACTTTT
124 TAGGACG-----CCTTTT-AAAGCCCACACGAGTTGGTGGCACTTTC
290243 TAGTCCTCAAAGAGCAGGA
1 TAGTCCTCAAAGAGCAGGA
290262 TGCACTTTAT
Statistics
Matches: 306, Mismatches: 40, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
164 6 0.02
165 201 0.66
166 4 0.01
169 1 0.00
170 4 0.01
171 43 0.14
176 5 0.02
177 42 0.14
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (164 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAA
GAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGTAGGACG
CCTTTTAAAGCCCACACGAGTTGGTGGCACTTTC
Found at i:291122 original size:19 final size:21
Alignment explanation
Indices: 291079--291130 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
291069 TTCAATAATT
*
291079 TGTATCGATACATTCAGTAAA
1 TGTATCGATACATTAAGTAAA
291100 TGTATCGATACA-TAAGT-AA
1 TGTATCGATACATTAAGTAAA
291119 TGTATCGATACA
1 TGTATCGATACA
291131 GTGTATCGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 14 0.47
20 4 0.13
21 12 0.40
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTAAGTAAA
Found at i:293625 original size:50 final size:48
Alignment explanation
Indices: 293571--293741 Score: 153
Period size: 50 Copynumber: 3.6 Consensus size: 48
293561 GTTTCTCAAT
* *
293571 TTTTCATAATCAGGGATACTCCAACCCTGATTTTATTTCTAAAACACTAA
1 TTTTCACAATCGGGGATACTCCAACCC-GATTTTATTTCTAAAACAC-AA
*
293621 TTTTCCACAATC-GGGATACTCCAACCCCAGTTTTATTT-TCAAAACAC--
1 TTTT-CACAATCGGGGATACTCCAACCCGA-TTTTATTTCT-AAAACACAA
* *
293668 ----CA-ATTCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAA
1 TTTTCACAATCGGGGATACTCCAAC-CCGATTTTATTT-CTAAAACA-CAA
293714 TTTTTCACAATCGGGGATACTCCAACCC
1 -TTTTCACAATCGGGGATACTCCAACCC
293742 TGTTAATCAT
Statistics
Matches: 99, Mismatches: 6, Indels: 31
0.73 0.04 0.23
Matches are distributed among these distances:
41 3 0.03
42 23 0.23
43 9 0.09
44 1 0.01
49 2 0.02
50 34 0.34
51 10 0.10
52 17 0.17
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.31
Consensus pattern (48 bp):
TTTTCACAATCGGGGATACTCCAACCCGATTTTATTTCTAAAACACAA
Found at i:293697 original size:42 final size:43
Alignment explanation
Indices: 293633--293715 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 43
293623 TTCCACAATC
*
293633 GGGATACTCCAACCCCAGTTTTATTTTC-AAAACACCAATTCG
1 GGGATACTCCAACCCCAGTTTTATTTCCAAAAACACCAATTCG
*
293675 GGGATACTCCAACTCC-GATTTTATTTCCAAAAACACCAATT
1 GGGATACTCCAACCCCAG-TTTTATTTCCAAAAACACCAATT
293716 TTTCACAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 1 0.03
42 24 0.65
43 12 0.32
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.29
Consensus pattern (43 bp):
GGGATACTCCAACCCCAGTTTTATTTCCAAAAACACCAATTCG
Found at i:293794 original size:28 final size:28
Alignment explanation
Indices: 293726--293797 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 28
293716 TTTCACAATC
*
293726 GGGGATACTCCAACCCTGTTAATCATCA
1 GGGGATACTCCAACCCCGTTAATCATCA
* ** *
293754 -GGGATACTCCAACCCCGTTATTTTTGA
1 GGGGATACTCCAACCCCGTTAATCATCA
293781 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
293798 CGATTTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTAATCATCA
Found at i:293885 original size:107 final size:107
Alignment explanation
Indices: 293674--293886 Score: 286
Period size: 107 Copynumber: 2.0 Consensus size: 107
293664 ACACCAATTC
*
293674 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
** *
293739 CCCTGTTAATCATCAGGGATACTCCAACCCCGTTATTTTTGA
66 CCCCATTAATCATCAGGGATACTCCAACCCCGGTATTTTTGA
* * *
293781 GGGGATACTCCAACCCCCGATTTTATTT-CTAAAACATCAATTTTTCATAATCGGGGATACTCCA
1 GGGGATACTCCAA-CCCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCA
* * * *
293845 ACCCCATTATTC-TCGAGGGGATACTCGAACCTCGGTTTTTTT
65 ACCCCATTAATCATC-A-GGGATACTCCAACCCCGGTATTTTT
293887 TTCTAAAACA
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
106 2 0.02
107 56 0.61
108 34 0.37
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
CCCCATTAATCATCAGGGATACTCCAACCCCGGTATTTTTGA
Found at i:293890 original size:80 final size:80
Alignment explanation
Indices: 293754--293919 Score: 224
Period size: 80 Copynumber: 2.1 Consensus size: 80
293744 TTAATCATCA
* * * *
293754 GGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAACATC
1 GGGATACTCCAACCCCATTATTCTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAACACC
* * *
293819 AATTTTTCATAATCG
66 AATTCTCCACAATCG
* * * * *
293834 GGGATACTCCAACCCCATTATTCTCGAGGGGATACTCGAACCTCGGTTTTTTTTTCTAAAACACC
1 GGGATACTCCAACCCCATTATTCTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAACACC
293899 AATTCTCCACAATCG
66 AATTCTCCACAATCG
293914 GGGATA
1 GGGATA
293920 TTCGAACTCC
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (80 bp):
GGGATACTCCAACCCCATTATTCTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAACACC
AATTCTCCACAATCG
Found at i:294105 original size:238 final size:239
Alignment explanation
Indices: 293672--294108 Score: 569
Period size: 238 Copynumber: 1.8 Consensus size: 239
293662 AAACACCAAT
* *
293672 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCC
1 TCGGGGATACTCCAACTCCAATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCC
* ** ** * *
293737 AACCCTGTTAATCATCAGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCCGAT
66 AACCCTATTAATCATCAGGGATACTCCAACCCCGTTACCTCCGAGGGCATACTCCAACCCCCGAC
* *
293802 TTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCATTATTCTCGAGGGGAT
131 TTTATTTCCAAAACATCAATTTCTCATAATCGGGGATACTCCAACCCCATTATTCTCGAGGGGAT
293867 ACTCGAACCTCGGTTTTTTTTTCTAAAACACCAATTCTCCACAA
196 ACTCGAACCTCGGTTTTTTTTTCTAAAACACCAATTCTCCACAA
* * ** * * *
293911 TCGGGGATATTCGAACTCCAATTTTATTTCC-AAAATGCTAGTTTTTCATAATCGAGGATACTCC
1 TCGGGGATACTCCAACTCCAATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCC
* *
293975 GA-CCTCATTATTTCATC-GGAGATACTCCAACCCCGTTACCTCCGAGGGCATACTCCAA-CCCC
66 AACCCT-ATTA-ATCATCAGG-GATACTCCAACCCCGTTACCTCCGAGGGCATACTCCAACCCCC
* ** * * *
294037 GACTTTATTTCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCTCGTTATT-TCTGAGG
128 GACTTTATTTCCAAAACATCAATTTCTCATAATCGGGGATACTCCAACCCCATTATTCTC-GAGG
294101 GGATACTC
192 GGATACTC
294109 CAATCCTGAT
Statistics
Matches: 168, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
237 5 0.03
238 97 0.58
239 66 0.39
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (239 bp):
TCGGGGATACTCCAACTCCAATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCC
AACCCTATTAATCATCAGGGATACTCCAACCCCGTTACCTCCGAGGGCATACTCCAACCCCCGAC
TTTATTTCCAAAACATCAATTTCTCATAATCGGGGATACTCCAACCCCATTATTCTCGAGGGGAT
ACTCGAACCTCGGTTTTTTTTTCTAAAACACCAATTCTCCACAA
Found at i:294126 original size:79 final size:79
Alignment explanation
Indices: 293995--294224 Score: 241
Period size: 78 Copynumber: 2.9 Consensus size: 79
293985 TTTCATCGGA
** * * *
293995 GATACTCCAACCCCGTTACCTCCGAGGGCATACTCCAACCCCGACTTTATTTCCAAAATATTGAT
1 GATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATTGAT
**
294060 TTCTCATAATTGGG
66 TTCTCATAACCGGG
* * * * * *
294074 GATACTCCAACCTCGTTATTTCTGAGGGGATACTCCAATCCTGATTTTATTTCC-TAACATCGAT
1 GATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATTGAT
* *
294138 TTTTCACAACCGGG
66 TTCTCATAACCGGG
* * *
294152 GATACTTCAACCCCGTTATTT-TCAAGGGGATACTCCAACCCCG-TTATTATCTCCAAAATATTA
1 GATACTCCAACCCCGTTATTTCT-GAGGGGATACTCCAACCCCGATT-TTATTTCCAAAATATT-
*
294215 AATTTCTCAT
63 GATTTCTCAT
294225 TGGGAAATAT
Statistics
Matches: 120, Mismatches: 27, Indels: 7
0.78 0.18 0.05
Matches are distributed among these distances:
77 3 0.03
78 60 0.50
79 50 0.42
80 7 0.06
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (79 bp):
GATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATATTGAT
TTCTCATAACCGGG
Found at i:296151 original size:200 final size:200
Alignment explanation
Indices: 295808--296208 Score: 526
Period size: 200 Copynumber: 2.0 Consensus size: 200
295798 GGATACCTTC
*
295808 TGTAAGCTCAAGGATTGAATGAACCAAGAGGGGGTGAATTGGTTCTTATTGAAAAATGAAGGTTT
1 TGTAAGCTCAAGGATGGAATGAACCAAGAGGGGGTGAATTGGTTCTTATTGAAAAATGAAGGTTT
* *** *
295873 TGAAAGAATTGATTCGAAAACAATTCGAAGATTAAAAGTGTAGGGAAAAAAGAAAGCTTGACACA
66 TGAAAGAATTGATTCGAAAACAATTAGAAGATTAAAAAAATAGGGAAAAAAGAAAACTTGACACA
295938 AGTGTTTATAGAGGTTCAATCCAAACAC-GACACCTACATCCTCTCTCCTCGACACTTCCTTGTC
131 AGTGTTTATAGAGGTTCAATCCAAACACAG-CACCTACATCCTCTCTCCTCGACACTTCCTTGTC
296002 GAGTGT
195 GAGTGT
* ** *
296008 TGTAAGCTCTAGGAATGGAA-GAACCAAGAGGGGGGTGAATTGGTTCTT-TTCGAAATTTGAATG
1 TGTAAGCTCAAGG-ATGGAATGAACCAAGA-GGGGGTGAATTGGTTCTTATT-GAAAAATGAAGG
** * *
296071 TTTTGTGAGAATTGTTTC-AAATACAACTTAG-AGA-TAAAAAAATAGGGAAAAGAGAAAACTTG
63 TTTTGAAAGAATTGATTCGAAA-ACAA-TTAGAAGATTAAAAAAATAGGGAAAAAAGAAAACTTG
* * * * *
296133 ACACAAGTGTTTATAGAGGTTCAGTCTAAGCACAGCACCTACGTCCTTTCTCCTCGACACTTCCT
126 ACACAAGTGTTTATAGAGGTTCAATCCAAACACAGCACCTACATCCTCTCTCCTCGACACTTCCT
*
296198 TGTTGAGTGT
191 TGTCGAGTGT
296208 T
1 T
296209 ACCACAATCC
Statistics
Matches: 175, Mismatches: 20, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
200 117 0.67
201 55 0.31
202 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (200 bp):
TGTAAGCTCAAGGATGGAATGAACCAAGAGGGGGTGAATTGGTTCTTATTGAAAAATGAAGGTTT
TGAAAGAATTGATTCGAAAACAATTAGAAGATTAAAAAAATAGGGAAAAAAGAAAACTTGACACA
AGTGTTTATAGAGGTTCAATCCAAACACAGCACCTACATCCTCTCTCCTCGACACTTCCTTGTCG
AGTGT
Found at i:296770 original size:20 final size:19
Alignment explanation
Indices: 296730--296814 Score: 83
Period size: 20 Copynumber: 4.6 Consensus size: 19
296720 CATTGGGCAC
296730 TGTATCGATACAATGATCCA
1 TGTATCGATACAATG-TCCA
*
296750 TTTATCGATACAATGTCCCA
1 TGTATCGATACAATGT-CCA
*
296770 TGTATC--TAC-A---CAA
1 TGTATCGATACAATGTCCA
296783 TGTATCGATACAATGTCCCA
1 TGTATCGATACAATGT-CCA
296803 TGTATCGATACA
1 TGTATCGATACA
296815 TTTCACTTAG
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
13 8 0.15
15 3 0.06
16 1 0.02
17 1 0.02
18 3 0.06
19 1 0.02
20 36 0.68
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAATGTCCA
Found at i:296886 original size:19 final size:19
Alignment explanation
Indices: 296843--296898 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
296833 CTGCCAGTTT
296843 CATGTATCGATACAATTGAG
1 CATGTATCGATACAA-TGAG
* *
296863 TATGTATTGATACAATGAG
1 CATGTATCGATACAATGAG
296882 CATGTATCGATACAATG
1 CATGTATCGATACAATG
296899 TATCAATACC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:299456 original size:13 final size:13
Alignment explanation
Indices: 299438--299472 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
299428 AGTAACCCTC
299438 TATCGATACAATA
1 TATCGATACAATA
*
299451 TATCGATACAATG
1 TATCGATACAATA
*
299464 TATTGATAC
1 TATCGATAC
299473 TTAGAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (13 bp):
TATCGATACAATA
Done.