Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold126
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2080828
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 191490 characters in sequence are not A, C, G, or T
File 5 of 13
Found at i:655446 original size:13 final size:13
Alignment explanation
Indices: 655430--655457 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
655420 ATACATTGCT
655430 CATTGTATCGATA
1 CATTGTATCGATA
655443 CATTGTATCGATA
1 CATTGTATCGATA
655456 CA
1 CA
655458 CTGCTCATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:655452 original size:33 final size:33
Alignment explanation
Indices: 655410--655479 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
655400 ATACATTTTG
* *
655410 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACACTGCTCATTCTATCGATA
655443 CATTGTATCGATACACTGCTCATTCTATCGATA
1 CATTGTATCGATACACTGCTCATTCTATCGATA
655476 CATT
1 CATT
655480 TTACAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (33 bp):
CATTGTATCGATACACTGCTCATTCTATCGATA
Found at i:658019 original size:51 final size:51
Alignment explanation
Indices: 657943--658062 Score: 179
Period size: 51 Copynumber: 2.4 Consensus size: 51
657933 TTATTTCCGA
*
657943 GGGGATACTCCAACCCCGATTTTATTTCTAAAACA-TCAATTCTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTCAATTCT-CACAATC
* * *
657994 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACTGATTTCTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTCAATTCTCACAATC
*
658045 GGGGATACTCTAACCCCG
1 GGGGATACTCCAACCCCG
658063 TTATTTCATC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
51 56 0.90
52 6 0.10
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.28
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTCAATTCTCACAATC
Found at i:658045 original size:130 final size:128
Alignment explanation
Indices: 657794--658098 Score: 322
Period size: 130 Copynumber: 2.4 Consensus size: 128
657784 TTTCATTGGG
* * *
657794 GATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAA---C-TTTATTTCTAAAATATTAATTT
1 GATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGTTTATTTCTAAAACATCAATTT
* * * * * * *
657855 CTCATAATCGGGAATACTCCAACCCCGGTCTTATTTCTAAAATATCAATTTTTTATAATCGGA
66 CTCACAATCGGGAATACTCCAACCCCGATCTTATTTCCAAAACATCAATTTCTCACAATCGGA
* * *
657918 GATACTCCCATCTCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAA-
1 GATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCG--TTTATTTCTAAAACATCAAT
* * * *
657982 TTCTCCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACA-CTGATTTCTCACAATCG
64 TTCT-CACAATCGGGAATACTCCAACCCCGATCTTATTTCCAAAACATC-AATTTCTCACAATCG
*
658046 GG
127 GA
*
658048 GATACTCTAACCCCGTTATTTCATCGA--GGATACTCCAACCCCG-TTATTTCT
1 GATACTCCAACCCCGTTATTTC--CGAGGGGATACTCCAACCCCGTTTATTTCT
658099 GAGGGGATAC
Statistics
Matches: 149, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
124 34 0.23
127 9 0.06
129 5 0.03
130 98 0.66
132 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (128 bp):
GATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGTTTATTTCTAAAACATCAATTT
CTCACAATCGGGAATACTCCAACCCCGATCTTATTTCCAAAACATCAATTTCTCACAATCGGA
Found at i:658082 original size:28 final size:28
Alignment explanation
Indices: 658042--658118 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
658032 ATTTCTCACA
* *
658042 ATCGGGGATACTCTAACCCCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
658070 ATCGAGGATACTCCAACCCCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
*
658098 -T-GAGGGGATACTTCAACCCCG
1 ATCGA--GGATACTCCAACCCCG
658119 GCTTTATTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.05
27 1 0.02
28 41 0.93
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCCCGTTATTTC
Found at i:658165 original size:51 final size:51
Alignment explanation
Indices: 658101--658219 Score: 177
Period size: 51 Copynumber: 2.3 Consensus size: 51
658091 TTATTTCTGA
*
658101 GGGGATACTTCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
1 GGGGATACTTCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
* * *
658152 GGGGATACTTCAACCCTGGCCTTATTTCTAAAATATTGATTTCTCATAATC
1 GGGGATACTTCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
*
658203 AGGGATA-TTCCAACCCC
1 GGGGATACTT-CAACCCC
658220 ATTATTTTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 2 0.03
51 59 0.97
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
GGGGATACTTCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
Found at i:658208 original size:158 final size:158
Alignment explanation
Indices: 657931--658243 Score: 398
Period size: 158 Copynumber: 2.0 Consensus size: 158
657921 ACTCCCATCT
* *
657931 CGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTCTCCACAATCGG
1 CGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAACATCAATTCTCCACAATCGG
** * *
657996 GGATACTCCAACTCCGATTTTATTTCCAAAACACTGATTTCTCACAATCGGGGATACTCTAACCC
66 GGATACTCCAACTCCGACCTTATTTCCAAAACACTGATTTCTCACAATCAGGGATACTCCAACCC
*
658061 CGTTA-TTTCATCGAGGATACTCCAACCC
131 CATTATTTTCA-CGAGGATACTCCAACCC
* * * * **
658089 CGTTATTTCTGAGGGGATACTTCAACCCCGGCTTTATTTCCAAAATATTGATT-TCTCACAATCG
1 CGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAACATCAATTCTC-CACAATCG
* * * * * * *
658153 GGGATACTTCAAC-CCTGGCCTTATTTCTAAAATATTGATTTCTCATAATCAGGGATATTCCAAC
65 GGGATACTCCAACTCC-GACCTTATTTCCAAAACACTGATTTCTCACAATCAGGGATACTCCAAC
658217 CCCATTATTTTCACGAGGATACTCCAA
129 CCCATTATTTTCACGAGGATACTCCAA
658244 TCTCGATTTT
Statistics
Matches: 132, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
157 4 0.03
158 123 0.93
159 5 0.04
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (158 bp):
CGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAACATCAATTCTCCACAATCGG
GGATACTCCAACTCCGACCTTATTTCCAAAACACTGATTTCTCACAATCAGGGATACTCCAACCC
CATTATTTTCACGAGGATACTCCAACCC
Found at i:660462 original size:21 final size:20
Alignment explanation
Indices: 660429--660478 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
660419 GAGATGTTGG
660429 ACATA-CTGAAAATGCATGAA
1 ACATAGCTGAAAATGCATG-A
*
660449 ACATAGCTTAAAATGCATGA
1 ACATAGCTGAAAATGCATGA
660469 ACATGAGCTG
1 ACAT-AGCTG
660479 TTAACATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (20 bp):
ACATAGCTGAAAATGCATGA
Found at i:660471 original size:20 final size:22
Alignment explanation
Indices: 660437--660477 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
660427 GGACATACTG
660437 AAAATGCATGAAACAT-AGCTT
1 AAAATGCATGAAACATGAGCTT
660458 AAAATGCATG-AACATGAGCT
1 AAAATGCATGAAACATGAGCT
660478 GTTAACATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (22 bp):
AAAATGCATGAAACATGAGCTT
Found at i:662434 original size:52 final size:49
Alignment explanation
Indices: 662378--662515 Score: 170
Period size: 48 Copynumber: 2.8 Consensus size: 49
662368 TAAGAAGAAT
*
662378 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATGACAAAGGC
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT--AAA-GAAAAAGGC
* * * * *
662430 GCCAATATGCTAATTCAAGGCTAGCGATATTGGACTT-AAGAAAAAGGT
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAAAGGC
* *
662478 GCCAATGTGCTGATTCAAAGCCAGCGACAGTGGACTTA
1 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
662516 GAAAGAGATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
48 38 0.52
49 2 0.03
52 33 0.45
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (49 bp):
GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAAAGGC
Found at i:662495 original size:48 final size:48
Alignment explanation
Indices: 662325--662519 Score: 176
Period size: 52 Copynumber: 3.9 Consensus size: 48
662315 ATACGAAGAA
* * * ** * *
662325 TGCCAATGTGCTGATCCACGGCCAGTGACATCAGACTCGAAGATAAGAAGAA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACT-TAAGA-AA-AAG-G
*
662377 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATGACAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT---AA-GAAAAAGG
* * * * *
662429 CGCCAATATGCTAATTCAAGGCTAGCGATATTGGACTTAAGAAAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAAAGG
* *
662477 TGCCAATGTGCTGATTCAAAGCCAGCGACAGTGGACTT-AGAAA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAA
662520 GAGATGGTTT
Statistics
Matches: 118, Mismatches: 21, Indels: 13
0.78 0.14 0.09
Matches are distributed among these distances:
47 5 0.04
48 38 0.32
49 2 0.02
52 65 0.55
53 3 0.03
54 3 0.03
55 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (48 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAGAAAAAGG
Found at i:662628 original size:32 final size:32
Alignment explanation
Indices: 662583--662899 Score: 279
Period size: 32 Copynumber: 9.9 Consensus size: 32
662573 TAAAAAGAGA
*
662583 TGCCACTAACTTGTGTGGGCTTTTGAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAGGGT
* **
662615 TGCTACCAACTTGTGTGGGCTTTAAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAGGGT
** * * * *
662647 TATCACCAGCTTTTGTAGGC-TTTGAAGGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAGGGT
* *
662678 TGCCACCGACTTGTATGGGCTTTTGAAGAGGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAA-A-GGGT
* * *
662712 TCCCACTAGCTTGTGTGGGC-TTTG-AAGAGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAG-GGT
*
662743 TGCCACTAACTTGTGTGGGCTTTTG-AAGAGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAG-GGT
* * * **
662775 TGCTACCAGCTAGTGTGGGCTTCAGAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAGGGT
* * * *
662807 TGCCACCGATTTGTGTAGGC-TTTAAGAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGA-AAGGGT
*
662839 TGCCACCAACTTATGTGGGC-TTTG-AAGAGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAG-GGT
* *
662870 TGCCACCAGCTTGTGTGGGCTTTGGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTTGAAAGG
662900 TTTATCTACT
Statistics
Matches: 224, Mismatches: 51, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
30 4 0.02
31 66 0.29
32 125 0.56
33 10 0.04
34 19 0.08
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (32 bp):
TGCCACCAACTTGTGTGGGCTTTTGAAAGGGT
Found at i:662865 original size:160 final size:158
Alignment explanation
Indices: 662583--662901 Score: 432
Period size: 160 Copynumber: 2.0 Consensus size: 158
662573 TAAAAAGAGA
* *
662583 TGCCACTAACTTGTGTGGGCTTTTGAAAGGGTTGCTACCAACTTGTGTGGGCTTTAAAAAGGGTT
1 TGCCACTAACTTGTGTGGGCTTTTGAAAGGGTTGCTACCAACTAGTGTGGGCTTCAAAAAGGGTT
* * * *
662648 ATCACCAGCTTTTGTAGGCTTTGAAGGGGTTGCCACCGACTTGTATGGGCTTTTGAAGAGGGGTT
66 ACCACCAGATTTTGTAGGCTTTGAAGGGGTTGCCACCAACTTATATGGGCTTTTGAAGA--GGTT
*
662713 CCCACTAGCTTGTGTGGGCTTT-GAAGAGGT
129 CCCACCAGCTTGTGTGGGCTTTGGAA-AGGT
* *
662743 TGCCACTAACTTGTGTGGGCTTTTG-AAGAGGTTGCTACCAGCTAGTGTGGGCTTCAGAAAGGGT
1 TGCCACTAACTTGTGTGGGCTTTTGAAAG-GGTTGCTACCAACTAGTGTGGGCTTCAAAAAGGGT
* *
662807 TGCCACC-GATTTGTGTAGGCTTT-AAGAAGGGTTGCCACCAACTTATGTGGGC-TTTGAAGAGG
65 TACCACCAGATTT-TGTAGGCTTTGAAG--GGGTTGCCACCAACTTATATGGGCTTTTGAAGAGG
*
662869 TTGCCACCAGCTTGTGTGGGCTTTGGAAAGGT
127 TTCCCACCAGCTTGTGTGGGCTTTGGAAAGGT
662901 T
1 T
662902 TATCTACTGG
Statistics
Matches: 142, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
158 29 0.20
159 13 0.09
160 79 0.56
161 21 0.15
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (158 bp):
TGCCACTAACTTGTGTGGGCTTTTGAAAGGGTTGCTACCAACTAGTGTGGGCTTCAAAAAGGGTT
ACCACCAGATTTTGTAGGCTTTGAAGGGGTTGCCACCAACTTATATGGGCTTTTGAAGAGGTTCC
CACCAGCTTGTGTGGGCTTTGGAAAGGT
Found at i:664517 original size:7 final size:7
Alignment explanation
Indices: 664505--664578 Score: 50
Period size: 7 Copynumber: 10.9 Consensus size: 7
664495 CTCCCCCTTT
664505 TTTTTTG
1 TTTTTTG
664512 TTTTTTG
1 TTTTTTG
664519 -TTTTT-
1 TTTTTTG
* *
664524 TTATGTG
1 TTTTTTG
664531 TTTTTTG
1 TTTTTTG
*
664538 --TTTGG
1 TTTTTTG
664543 CTTTATTT-
1 -TTT-TTTG
*
664551 TTTTGTG
1 TTTTTTG
664558 TTTTTTG
1 TTTTTTG
664565 TTTATTTG
1 TTT-TTTG
664573 TTTTTT
1 TTTTTT
664579 TATGAAGGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
5 4 0.08
6 10 0.20
7 27 0.53
8 8 0.16
9 2 0.04
ACGTcount: A:0.04, C:0.01, G:0.15, T:0.80
Consensus pattern (7 bp):
TTTTTTG
Found at i:664534 original size:27 final size:27
Alignment explanation
Indices: 664505--664582 Score: 99
Period size: 26 Copynumber: 2.9 Consensus size: 27
664495 CTCCCCCTTT
664505 TTTTTTGTTT-TTTGTTTTTTTATGTG
1 TTTTTTGTTTGTTTGTTTTTTTATGTG
*
664531 TTTTTTGTTTGGCTTT-ATTTTTT-TGTG
1 TTTTTTGTTT-G-TTTGTTTTTTTATGTG
*
664558 TTTTTTGTTTATTTGTTTTTTTATG
1 TTTTTTGTTTGTTTGTTTTTTTATG
664583 AAGGACGCTG
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
25 3 0.07
26 16 0.36
27 16 0.36
28 6 0.14
29 3 0.07
ACGTcount: A:0.05, C:0.01, G:0.15, T:0.78
Consensus pattern (27 bp):
TTTTTTGTTTGTTTGTTTTTTTATGTG
Found at i:665498 original size:13 final size:13
Alignment explanation
Indices: 665480--665504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
665470 CATAAAGTGT
665480 TGTATCGATACAA
1 TGTATCGATACAA
665493 TGTATCGATACA
1 TGTATCGATACA
665505 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:665498 original size:33 final size:33
Alignment explanation
Indices: 665460--665526 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
665450 TTCAACAATT
665460 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
665493 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
665526 T
1 T
665527 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:665656 original size:52 final size:52
Alignment explanation
Indices: 665600--665728 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
665590 CACCGATCTT
*
665600 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
665652 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATATACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
665704 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGCAAATTT
665729 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:672918 original size:17 final size:19
Alignment explanation
Indices: 672896--672940 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
672886 TGTTCTTTTC
*
672896 CAAAAAAAGAA-ACA-AAA
1 CAAAAAAAGAACAAATAAA
672913 CAAAAAAAAGAACAAATAAA
1 C-AAAAAAAGAACAAATAAA
672933 CAAAAAAA
1 CAAAAAAA
672941 AAGAAAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 1 0.04
18 10 0.42
19 9 0.38
20 4 0.17
ACGTcount: A:0.82, C:0.11, G:0.04, T:0.02
Consensus pattern (19 bp):
CAAAAAAAGAACAAATAAA
Found at i:672920 original size:18 final size:20
Alignment explanation
Indices: 672897--672946 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
672887 GTTCTTTTCC
*
672897 AAAAAAAGAAACA-AAAC-A
1 AAAAAAAGAAAAATAAACAA
672915 AAAAAAAGAACAAATAAACAA
1 AAAAAAAGAA-AAATAAACAA
672936 AAAAAAAGAAA
1 AAAAAAAGAAA
672947 GAAGAAGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 10 0.36
19 2 0.07
20 5 0.18
21 11 0.39
ACGTcount: A:0.84, C:0.08, G:0.06, T:0.02
Consensus pattern (20 bp):
AAAAAAAGAAAAATAAACAA
Found at i:673941 original size:32 final size:32
Alignment explanation
Indices: 673898--674246 Score: 153
Period size: 32 Copynumber: 11.3 Consensus size: 32
673888 AAATCTCTTC
673898 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* * *
673930 TCAATGTCCACGACTTAGTGGCATCCTTTTCT
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* * *
673962 TCAAAGCCCACGACTCCGTGGCAGCTTTTTCTTT
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTC--T
* * * *
673996 TTAAAGCCCACAACTCCA-TAGCACTCTTTTTCTT
1 TCAAAGCCCACGACT-CAGTGGCA-TCCTTTTC-T
** * * * *
674030 TTTAAGCCCACAAGTTAGTGGCACCCTTTTC-
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* * * *
674061 -AAAAGCCCACAAGTCAGTGGCAACC---T-T
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* * *
674088 TAAAAGCCCACAAGTCAGTGGCAT-CTTTT-T
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* * * *
674118 TCAAAAGCCCACAAGTTAGTGGCACCCTTTTC-
1 TC-AAAGCCCACGACTCAGTGGCATCCTTTTCT
* * * *
674150 -AAAAGCCCACAAGTCAGTGGCA-AC----CT
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* * *
674176 TCAAAGCCCACAAATCAGTGGCACCCTTTT-T
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
* * * * *
674207 CCGAAGCCCACAAGTCGGTGGCAT-CTTTTC-
1 TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
674237 -CAAAGCCCAC
1 TCAAAGCCCAC
674247 AAATCATTTT
Statistics
Matches: 256, Mismatches: 40, Indels: 45
0.75 0.12 0.13
Matches are distributed among these distances:
25 1 0.00
27 22 0.09
28 23 0.09
29 10 0.04
30 49 0.19
31 40 0.16
32 59 0.23
33 7 0.03
34 37 0.14
35 8 0.03
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (32 bp):
TCAAAGCCCACGACTCAGTGGCATCCTTTTCT
Found at i:674012 original size:34 final size:35
Alignment explanation
Indices: 673964--674042 Score: 108
Period size: 34 Copynumber: 2.3 Consensus size: 35
673954 CCTTTTCTTC
* * *
673964 AAAGCCCACGACTCCGTGGCA-GCTTTTTCTTTTT
1 AAAGCCCACAACTCCATAGCACGCTTTTTCTTTTT
*
673998 AAAGCCCACAACTCCATAGCACTCTTTTTCTTTTT
1 AAAGCCCACAACTCCATAGCACGCTTTTTCTTTTT
674033 -AAGCCCACAA
1 AAAGCCCACAA
674043 GTTAGTGGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 28 0.70
35 12 0.30
ACGTcount: A:0.25, C:0.32, G:0.11, T:0.32
Consensus pattern (35 bp):
AAAGCCCACAACTCCATAGCACGCTTTTTCTTTTT
Found at i:674067 original size:30 final size:30
Alignment explanation
Indices: 674033--674248 Score: 264
Period size: 30 Copynumber: 7.3 Consensus size: 30
674023 TTTTCTTTTT
*
674033 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
*
674063 AAGCCCACAAGTCAGTGGCAACC-TTT-AA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
**
674091 AAGCCCACAAGTCAGTGGCATCTTTTTTCAA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCAA
*
674122 AAGCCCACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
*
674152 AAGCCCACAAGTCAGTGGCAACC--TTC-A
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
* **
674179 AAGCCCACAAATCAGTGGCACCCTTTTTCCG
1 AAGCCCACAAGTCAGTGGCACCC-TTTTCAA
* * *
674210 AAGCCCACAAGTCGGTGGCA-TCTTTTCCA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
674239 AAGCCCACAA
1 AAGCCCACAA
674249 ATCATTTTGT
Statistics
Matches: 162, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
27 22 0.14
28 25 0.15
29 19 0.12
30 57 0.35
31 39 0.24
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (30 bp):
AAGCCCACAAGTCAGTGGCACCCTTTTCAA
Found at i:674108 original size:58 final size:60
Alignment explanation
Indices: 674033--674248 Score: 264
Period size: 58 Copynumber: 3.7 Consensus size: 60
674023 TTTTCTTTTT
* *
674033 AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACC-TTT-AA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCAA
** *
674091 AAGCCCACAAGTCAGTGGCATCTTTTTTCAAAAGCCCACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCA-CCCTTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCAA
* * **
674152 AAGCCCACAAGTCAGTGGCAACC--TTC-AAAGCCCACAAATCAGTGGCACCCTTTTTCCG
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCACCC-TTTTCAA
* * *
674210 AAGCCCACAAGTCGGTGGCA-TCTTTTCCAAAGCCCACAA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAAAAGCCCACAA
674249 ATCATTTTGT
Statistics
Matches: 137, Mismatches: 14, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
57 23 0.17
58 46 0.34
59 32 0.23
60 14 0.10
61 22 0.16
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (60 bp):
AAGCCCACAAGTCAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCAA
Found at i:674148 original size:89 final size:88
Alignment explanation
Indices: 674033--674248 Score: 326
Period size: 89 Copynumber: 2.5 Consensus size: 88
674023 TTTTCTTTTT
674033 AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCCA
1 AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACC-TTAAAAGCCCA
* * *
674098 CAAGTCAGTGGCATCTTTTTTCAA
65 CAAATCAGTGGCACCCTTTTTCAA
*
674122 AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCAC
1 AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTAAAAGCCCAC
**
674187 AAATCAGTGGCACCCTTTTTCCG
66 AAATCAGTGGCACCCTTTTTCAA
** * *
674210 AAGCCCACAAGTCGGTGGCA-TCTTTTCCAAAGCCCACAA
1 AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAA
674249 ATCATTTTGT
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
87 17 0.15
88 47 0.40
89 53 0.45
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (88 bp):
AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTAAAAGCCCAC
AAATCAGTGGCACCCTTTTTCAA
Found at i:674558 original size:13 final size:13
Alignment explanation
Indices: 674540--674564 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
674530 CATAAAGTGT
674540 TGTATCGATACAA
1 TGTATCGATACAA
674553 TGTATCGATACA
1 TGTATCGATACA
674565 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:674562 original size:33 final size:33
Alignment explanation
Indices: 674520--674586 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
674510 TTCAACGATT
674520 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
674553 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
674586 T
1 T
674587 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:674699 original size:52 final size:53
Alignment explanation
Indices: 674640--674788 Score: 178
Period size: 52 Copynumber: 2.9 Consensus size: 53
674630 ATCGATGCAT
***
674640 TGTATCGATACACCGAT-CTTTGTACCGATACATGCAGGAAAATTTGCCCAGA
1 TGTATCGATACACCGATAAAATGTACCGATACATGCAGGAAAATTTGCCCAGA
** * *
674692 TGTATCGATACA-TTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACCGATAAAATGTACCGATACATGCAGGAAAATTTGCCCAGA
* * * *
674744 TGTATCGATACA-CTATTAAATGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACACCGATAAAATGTACCGATACATGCAGGAAAATTT
674789 TCATATTTCA
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (53 bp):
TGTATCGATACACCGATAAAATGTACCGATACATGCAGGAAAATTTGCCCAGA
Found at i:691167 original size:21 final size:20
Alignment explanation
Indices: 691119--691175 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
691109 GTTAAAACCC
*
691119 AAAATGTATCGATA-TAATG
1 AAAATGTATCGATACAAATG
691138 AATAATGTATCGATACAAATAG
1 AA-AATGTATCGATACAAAT-G
*
691160 TAAATGTATCGATACA
1 AAAATGTATCGATACA
691176 TTTCCCTGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.06
20 12 0.36
21 17 0.52
22 2 0.06
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (20 bp):
AAAATGTATCGATACAAATG
Found at i:691248 original size:20 final size:21
Alignment explanation
Indices: 691223--691276 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
691213 CATTTTAGCC
691223 ATGTATCGATACATTCACT-T
1 ATGTATCGATACATTCACTGT
* * *
691243 ATGTATTGATTCATTTACTGT
1 ATGTATCGATACATTCACTGT
* *
691264 TTATATCGATACA
1 ATGTATCGATACA
691277 AATTATAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATTCACTGT
Found at i:697904 original size:906 final size:898
Alignment explanation
Indices: 696112--698696 Score: 3608
Period size: 906 Copynumber: 2.9 Consensus size: 898
696102 CCCATCTTTT
* * * **
696112 GCTATCCCACCACATCTAACATGAAATAACCTACCCCAGCCTAACCTAAATACTGACCCTAATGC
1 GCTATCCCACCACATCCACCATGAAATAACCTA-CCCAG-CTAGCCTAAATACCAACCCTAATGC
* *
696177 CAATAATGCACTAAACAATCTAGGTGCAAGCCAACGAAGGCAGCTATTTGACCCTATCCCTATGA
64 CAATAATGCACTAAACAATCTAGGTGCAAACCAGCGAAGGCAGCTATTTGACCCTATCCCTATGA
*
696242 CATATAGGGAGCTTTACCAGACTCTACTCCAAAGTCATCTAGTGGCCCCCTGAGTATGTCCT-GA
129 CATATAGGAAGCTTTACCAGACTCTACTCCAAAGTCATCTAGTGG-CCCCTGAGTATGTCCTAG-
*
696306 AGAGAAAGCCTCCATACCCTCACTAGTATAACCCCAATACCCATTGTGATTACCATGCTAAGGCA
192 AGAGAAAGCCTCCATACCCTCACTAGTATAA-CCCAATGCCCATTGTGATTACCATGCTAAGGCA
* *
696371 GCGGAGCATGACATTGAGAATTGCTTCCCTTTCAAG-GAAAGGGTACAAGGCCTACTTGATTTAA
256 GCGGGGCATGACATTGAGAATTGCTTCCCTTTCAAGCG-AAGGGTACAAGGCCTACTTGATTCAA
* * *
696435 AGGTTCTACAATTTGGGGCAAGTCAAGGGCCGAATGTTGTAGTAAACCCCGTACCAAATCATGCT
320 AGGTTCTACAGTTTAGGGCAAGTCAAGGGCCGAATGTTGCAGTAAACCCCGTACCAAATCATGCT
* *
696500 GAGCCAGTAAACCCTCGACCTTGAGCAAAAAAATCAGTCTCCATCCGTTAGAGTTGACTTTTGAA
385 GAGCCAGTAAACCCTCGACCTTGAGC-AAAAAATC-GTCTCCATCCATTAGAGTTGACTTTTGAC
*
696565 AATGGAGTCGTGTTGGAAATCTTTGCATTTTTCTTGCCTGTTTTGTGAAAATCTACTTGCCTTTG
448 AATGGAGTCGTGTTGGAAATCTTTGCACTTTTCTTGCCTGTTTTGTGAAAATCTACTTGCCTTTG
* *
696630 CCAGATGGCATGTAGGAATCTTGTGCAATGGGCCCTTTTATCAAATATTATCAATGAAAATGACT
513 CCAGATGGCATGTAGGAATCTTATGCAATGGGCCCCTTTATCAAATATTATCAATGAAAATGACT
** * *
696695 TTTGCATAAATCATTCCATCATGTGTGTCAATTTTATTTTTCACTTCTTTTCAACTTTTTTTTCT
578 TTTGCATAAATCATTCCATCATGTGTGTCAATTTTATTTTTCACCCCTTTTTAACTTTTTTTTGT
* * *
696760 CCCTATGTTTTTGTCTTCATCTTAGTCCTTTGCCAGTCACATTTTGTCTATGTCGTTCATTCTCA
643 CCC-ACGTTTATGTCTTCATCTTAATCCTTTGCCA-TCACATTTTGTCTATGTCGTTCATTCTCA
*
696825 CATT-TTGCCAAATGCA-TCGATAAAAATGACATGAATGTTTCAAGATAACCAATCGAAGATCAA
706 CATTCTT-CCAAATGCACTAG-TAAAAATGACATGAATGTTTCAAGATAACCAATCG-AGATC-A
*
696888 TTTT-GAATAATGAACATATTCAGGTGTGGCCAATGTCATCAAAGATCCTAGGAGAGTCCGGGCC
767 TTTTCGAATAATGAACATGTTCAGGTGTGGCCAATGTCATCAAAGATCCTAGGAGAGTCCGGGCC
*
696952 TTACCCTCAAAACATTCCAAATCAAATCTTAGTCAATCCATAAGTTGGCCCTATGGCACCAACAT
832 TTACCCTCAAAACATTCCAAATCAAATCTGAGTCAATCCATAAGTTGGCCCTATGGCACCAAC-T
697017 -TC
896 GTC
697019 GCTATCCCACCACATCCACCATGAAATAACCTACCCTAAGCTAGCCTAAATACCAACCCTAATGC
1 GCTATCCCACCACATCCACCATGAAATAACCTACCC--AGCTAGCCTAAATACCAACCCTAATGC
* ** *
697084 CAATAATGCACTAAACAATCTAGGTGCAAACCAGTGAAGGCAGCTATTCAACCTTATCCCTATGA
64 CAATAATGCACTAAACAATCTAGGTGCAAACCAGCGAAGGCAGCTATTTGACCCTATCCCTATGA
*
697149 CATAT-GAGAAGCTTTACCAGACTCTACTCCAAAGTCATCTAGTGGCCCCTGAGTATGTCTTAGA
129 CATATAG-GAAGCTTTACCAGACTCTACTCCAAAGTCATCTAGTGGCCCCTGAGTATGTCCTAGA
* * *
697213 GAGAAAGCCTCCATACGCTCACTGGTATAACCTCAATGCCCATTGTGATTACCATGCTAAGGTAG
193 GAGAAAGCCTCCATACCCTCACTAGTATAACC-CAATGCCCATTGTGATTACCATGCTAAGGCAG
*
697278 CGGGGCATGACATTGAGAATTGCTTCCCTTTCAAGCGAAGGGTACAAGGCCTATTTGATTCAAAG
257 CGGGGCATGACATTGAGAATTGCTTCCCTTTCAAGCGAAGGGTACAAGGCCTACTTGATTCAAAG
* ** *
697343 GTTCTACAGTTTAGGGCAAGTTAAGGGTTGAATGTTGCAGTAAACCCCGTACCAAATCATACTGA
322 GTTCTACAGTTTAGGGCAAGTCAAGGGCCGAATGTTGCAGTAAACCCCGTACCAAATCATGCTGA
* * * *
697408 GCCAGCAAACCCTCAACCTTGAGCAAACAAATCTGTCTCCATCCATTAGGGTCGACTTTTGACAA
387 GCCAGTAAACCCTCGACCTTGAGCAAA-AAATC-GTCTCCATCCATTAGAGTTGACTTTTGACAA
* *
697473 TGGAGTTGTGTTGGAAATCTTTGCACTTTTCTTGCTTGTTTTGTGAAAATCTACTTGCCTTTGCC
450 TGGAGTCGTGTTGGAAATCTTTGCACTTTTCTTGCCTGTTTTGTGAAAATCTACTTGCCTTTGCC
* * *
697538 CGTTGGCATGTAGGAATCTTATGCAATGGGCCCCTTTATCGAATATTATCAATGAAAATGACTTT
515 AGATGGCATGTAGGAATCTTATGCAATGGGCCCCTTTATCAAATATTATCAATGAAAATGACTTT
* * *
697603 TGCATAAATAATTACATCATGTGTATCAATTTTATTTTTCACCCCTTTTTAACTTTTTTTTGTCC
580 TGCATAAATCATTCCATCATGTGTGTCAATTTTATTTTTCACCCCTTTTTAACTTTTTTTTGT-C
697668 CCACGTTTATGTCTTCATCTTAATCCTTTGCCTATCACATTTTGTCTATGTCGTTCATTCTCACA
644 CCACGTTTATGTCTTCATCTTAATCCTTTGCC-ATCACATTTTGTCTATGTCGTTCATTCTCACA
697733 TTCTTCCAAATGCACTAGTAAAAATGACATGAATGTTTCAAGATAACCAATCAGAGATCATTTTC
708 TTCTTCCAAATGCACTAGTAAAAATGACATGAATGTTTCAAGATAACCAATC-GAGATCATTTTC
* * *
697798 GAAAAACGAACATGTTCAGGTGTGGCCAATGTCATCAAAGATCCTA-GAGAGTCTGGGCCTTACC
772 GAATAATGAACATGTTCAGGTGTGGCCAATGTCATCAAAGATCCTAGGAGAGTCCGGGCCTTACC
* *
697862 CTCAAAACATTCTAAATCAAATCTGAGTCAATGCCGTAAGTTGGCCCTATGGCACCAACTGTC
837 CTCAAAACATTCCAAATCAAATCTGAGTCAAT-CCATAAGTTGGCCCTATGGCACCAACTGTC
* ** *
697925 ACTATCCCACTGCATCCACCATGAAATAACCTACCC--CGAG-CT-AATACCAACCCTAAT-CCT
1 GCTATCCCACCACATCCACCATGAAATAACCTACCCAGCTAGCCTAAATACCAACCCTAATGCC-
* * * * * *
697985 AATAATGCACTAAATAATCCAGGTGCAAACTAGGGAAGGTAGCAATTTGACCCTATCCCTATGAC
65 AATAATGCACTAAACAATCTAGGTGCAAACCAGCGAAGGCAGCTATTTGACCCTATCCCTATGAC
* * *
698050 CTACAAGGAA-CTTTACCAGACTCTACTCTAAAGTCATCTAGTGGCCCCTGAGTATGTCCTAGAG
130 ATA-TAGGAAGCTTTACCAGACTCTACTCCAAAGTCATCTAGTGGCCCCTGAGTATGTCCTAGAG
* * * *
698114 AGAAAGCTTCCATACCCTCAGTAGTATAACCCTAATGCCCATTGTGATTACCATGTTAGGGCAGC
194 AGAAAGCCTCCATACCCTCACTAGTATAACCC-AATGCCCATTGTGATTACCATGCTAAGGCAGC
* * * *
698179 AGGGCATGACATTGAGAATTGCTTCTCTTTCAAGCGAAGGGTACAGGGCCTGCTTGATTCAAAGG
258 GGGGCATGACATTGAGAATTGCTTCCCTTTCAAGCGAAGGGTACAAGGCCTACTTGATTCAAAGG
* * * *
698244 TTCTATAGTTCAGGGCAAGTCAAGGGCCGAATGTTGCGGTAAACCCTC-AACCAAATCATGCTGA
323 TTCTACAGTTTAGGGCAAGTCAAGGGCCGAATGTTGCAGTAAACCC-CGTACCAAATCATGCTGA
* *
698308 GCTAGTAAACCCTCGACCTTGAGCAAAAGAGTCGATCTCCATCCATTAGAGTTGACTTTTGACAA
387 GCCAGTAAACCCTCGACCTTGAGCAAAA-AATCG-TCTCCATCCATTAGAGTTGACTTTTGACAA
* * * * *
698373 TGGAGTCGTGCTGAAAATCTTTGTACTTTTCTTGCCTATTTTGTGAAACTCTACTTGCCTTTGCC
450 TGGAGTCGTGTTGGAAATCTTTGCACTTTTCTTGCCTGTTTTGTGAAAATCTACTTGCCTTTGCC
* ** * * *
698438 TGATGGCATGTAATAATCTTCTGCAATAGGCCGCTTTATCAAATATTATCAATGAAAATGACTTT
515 AGATGGCATGTAGGAATCTTATGCAATGGGCCCCTTTATCAAATATTATCAATGAAAATGACTTT
* * * * *
698503 TGCATAAATCATTCCATCATGTGTGTTAATTGT-TTTTT--GCCC----TCAC--ATTTTTGT--
580 TGCATAAATCATTCCATCATGTGTGTCAATTTTATTTTTCACCCCTTTTTAACTTTTTTTTGTCC
* * *
698557 --C-TTCATG------T-TT-ATCCTTTGCCCGTTACATTTTGTCTATGTCGTTCATTCTCACAT
645 CACGTTTATGTCTTCATCTTAATCCTTTG-CCATCACATTTTGTCTATGTCGTTCATTCTCACAT
* * * * *
698611 TCTTCTAAATGCACTAGTAAAAATGACATGAATG-TTCGAGATAAGCAATCGGAGATTAATTTCG
709 TCTTCCAAATGCACTAGTAAAAATGACATGAATGTTTCAAGATAACCAATC-GAGATCATTTTCG
*
698675 AATAATAAACATGTTCAGGTGT
773 AATAATGAACATGTTCAGGTGT
698697 TCTTGGGGAG
Statistics
Matches: 1517, Mismatches: 138, Indels: 77
0.88 0.08 0.04
Matches are distributed among these distances:
876 44 0.03
877 72 0.05
878 4 0.00
879 1 0.00
885 5 0.00
886 1 0.00
891 7 0.00
893 3 0.00
897 3 0.00
899 10 0.01
900 493 0.32
901 6 0.00
902 4 0.00
905 58 0.04
906 639 0.42
907 165 0.11
908 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (898 bp):
GCTATCCCACCACATCCACCATGAAATAACCTACCCAGCTAGCCTAAATACCAACCCTAATGCCA
ATAATGCACTAAACAATCTAGGTGCAAACCAGCGAAGGCAGCTATTTGACCCTATCCCTATGACA
TATAGGAAGCTTTACCAGACTCTACTCCAAAGTCATCTAGTGGCCCCTGAGTATGTCCTAGAGAG
AAAGCCTCCATACCCTCACTAGTATAACCCAATGCCCATTGTGATTACCATGCTAAGGCAGCGGG
GCATGACATTGAGAATTGCTTCCCTTTCAAGCGAAGGGTACAAGGCCTACTTGATTCAAAGGTTC
TACAGTTTAGGGCAAGTCAAGGGCCGAATGTTGCAGTAAACCCCGTACCAAATCATGCTGAGCCA
GTAAACCCTCGACCTTGAGCAAAAAATCGTCTCCATCCATTAGAGTTGACTTTTGACAATGGAGT
CGTGTTGGAAATCTTTGCACTTTTCTTGCCTGTTTTGTGAAAATCTACTTGCCTTTGCCAGATGG
CATGTAGGAATCTTATGCAATGGGCCCCTTTATCAAATATTATCAATGAAAATGACTTTTGCATA
AATCATTCCATCATGTGTGTCAATTTTATTTTTCACCCCTTTTTAACTTTTTTTTGTCCCACGTT
TATGTCTTCATCTTAATCCTTTGCCATCACATTTTGTCTATGTCGTTCATTCTCACATTCTTCCA
AATGCACTAGTAAAAATGACATGAATGTTTCAAGATAACCAATCGAGATCATTTTCGAATAATGA
ACATGTTCAGGTGTGGCCAATGTCATCAAAGATCCTAGGAGAGTCCGGGCCTTACCCTCAAAACA
TTCCAAATCAAATCTGAGTCAATCCATAAGTTGGCCCTATGGCACCAACTGTC
Found at i:700913 original size:79 final size:79
Alignment explanation
Indices: 700752--701495 Score: 1048
Period size: 79 Copynumber: 9.4 Consensus size: 79
700742 TAAAAAAAAT
* * * ** *
700752 CGGGGTTAGAGTATCCCCGATTATAAAAAAAATTGATGCTTTAGAAATAAGGGCCGAGGTTGGAG
1 CGGGGTTGGAGTATCCCCGATTAT--GAAAAATTGATGTTTTAGAAATAA-AACCGGGGTTGGAG
*
700817 TATCCCCGT-GAAAATAA
63 TATCCCC-TCGGAAATAA
* * * * ** * * *
700834 CGGGGTTGGAGTATCCCCGATTGTGAGAAATTGGTGTTTTGGAGCTAAAATCAGAGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
700899 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * * *
700913 CGGGGTTGGAGTATACCCGATTATGAAAAATTGATGCTTTAGAAACAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
700978 CCCCTCAGAAATAA
66 CCCCTCGGAAATAA
* * *
700992 CGGGGTTGGAGTATCCTCGATTATGAAAAATTGATGTTTTAGAAATAAAACTGGGGTTTGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
701057 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * *
701071 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGCTTTAGAAACAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
701136 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* * * * *
701150 CGGGGTTGGAGTATCCTCGATTATGAAAAATTTATGGTTTAGAAATAAAATCGGGGTTTGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
701215 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* *
701229 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTT----ATAGAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
701290 CCCCTCGAAAATAA
66 CCCCTCGGAAATAA
*
701304 CGGGGTTGGAGTATCCCCGATTACGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
701369 CCCCTCGAAAATAA
66 CCCCTCGGAAATAA
* *
701383 TGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
701448 CCCCTCGGAAATAA
66 CCCCTCGGAAATAA
* *
701462 CGAGGTTGGAGTATCCCCGATTATGAGAAATTGA
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGA
701496 GAAAATTAAA
Statistics
Matches: 592, Mismatches: 65, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
75 71 0.12
78 1 0.00
79 481 0.81
80 17 0.03
82 22 0.04
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCGGAAATAA
Found at i:702934 original size:35 final size:35
Alignment explanation
Indices: 702895--703099 Score: 374
Period size: 35 Copynumber: 5.9 Consensus size: 35
702885 TTCATTATTT
*
702895 ATGCCCATCATTCAATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
*
702930 ATGCCCATCATTCCATGCCTCCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
*
702965 ATGCCCATCATTCCATGCCTTCATTTTTATATTCA
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
703000 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
*
703035 ATTCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
703070 ATGCCCATCATTCCATGCCTTCATTTTTAT
1 ATGCCCATCATTCCATGCCTTCATTTTTAT
703100 TATTTTTTTT
Statistics
Matches: 163, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 163 1.00
ACGTcount: A:0.21, C:0.31, G:0.05, T:0.43
Consensus pattern (35 bp):
ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
Found at i:703600 original size:40 final size:41
Alignment explanation
Indices: 703554--703657 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 41
703544 TCCCACTTTT
*
703554 TTGAGGACAAAGAAAAAGAG-AATGAAATAG-GTCCTGCTCC
1 TTGAGGACAAAGAAAAAGAGAAAAGAAA-AGTGTCCTGCTCC
* * *
703594 TTGAGGACAAAGGAAAAGAAGAAAAGGAAAGTGTCCTGCTTC
1 TTGAGGACAAAGAAAAAG-AGAAAAGAAAAGTGTCCTGCTCC
703636 TTGAGGACAAAGTGAAAAAGAG
1 TTGAGGACAAA--GAAAAAGAG
703658 CACGTCTCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
40 17 0.31
41 4 0.07
42 25 0.46
43 2 0.04
44 6 0.11
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (41 bp):
TTGAGGACAAAGAAAAAGAGAAAAGAAAAGTGTCCTGCTCC
Found at i:703761 original size:41 final size:41
Alignment explanation
Indices: 703667--703773 Score: 108
Period size: 41 Copynumber: 2.5 Consensus size: 41
703657 GCACGTCTCA
* *
703667 TTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACTTCCTAC
1 TTTTT-GAGGACAAA-GAAAAAGGAAAACGAAATACGTCCTAC
* * * *
703710 TCTCTAAGGACAAAGAAAAAGGAAAAC-AAAGTGCGTCCTAC
1 TTTTTGAGGACAAAGAAAAAGGAAAACGAAA-TACGTCCTAC
703751 TTTTTGAGGACAAAAGAGAAAAG
1 TTTTTGAGGAC-AAAGA-AAAAG
703774 AAGGGAAAGA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
40 3 0.06
41 28 0.54
42 13 0.25
43 8 0.15
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (41 bp):
TTTTTGAGGACAAAGAAAAAGGAAAACGAAATACGTCCTAC
Found at i:703774 original size:118 final size:117
Alignment explanation
Indices: 703550--703772 Score: 256
Period size: 119 Copynumber: 1.9 Consensus size: 117
703540 GGTGTCCCAC
* * * * *
703550 TTTTTTGAGGACAAAGAAAAAGAGAATGAAATAGGTCCTGCTCCTTGAGGACAAAGGAAAAGAAG
1 TTTTTCGAGGACAAAGAAAAAGAGAACGAAATACGTCCTACTCCTTAAGGACAAAGGAAAAGAAG
* * *
703615 AAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGCACGTCTCA
66 AAAAGCAAAGTGTCCTACTTCTTGAGGACAAAGAGAAAAAGAGCACGTCTCA
* *
703667 TTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACTTCCTACT-CTCTAAGGACAAA-GAAAA-
1 TTTTTCGAGGACAAA-GAAAAAGAG-AACGAAATACGTCCTACTCCT-TAAGGACAAAGGAAAAG
* *
703729 AGGAAAA-CAAAGTGCGTCCTACTTTTTGAGGACAAAAGAGAAAA
63 AAGAAAAGCAAAGT--GTCCTACTTCTTGAGGAC-AAAGAGAAAA
703773 GAAGGGAAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
116 5 0.06
117 20 0.23
118 31 0.35
119 32 0.36
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.19
Consensus pattern (117 bp):
TTTTTCGAGGACAAAGAAAAAGAGAACGAAATACGTCCTACTCCTTAAGGACAAAGGAAAAGAAG
AAAAGCAAAGTGTCCTACTTCTTGAGGACAAAGAGAAAAAGAGCACGTCTCA
Found at i:704015 original size:60 final size:59
Alignment explanation
Indices: 703789--704048 Score: 259
Period size: 61 Copynumber: 4.4 Consensus size: 59
703779 AAAGAAGTTT
** * *
703789 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCATGTGGTCTTTGAAAAATAAAGGC
1 GTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTG-AAAAGAAAGGC
* * * * *
703850 GTCTTGCTCTTCGAGGACTGGAAGATGCCACCAACTAGTGTGGGATTTGCAAAAAGAAA-GC
1 GTCCTGCTCTTTGAGGACTGAAAG-TGCCACCAACTTGTGTGGGCTTTG--AAAAGAAAGGC
* * * *
703911 ATCCTACTCTTTGAGGATTGAAAAGTGCCACTAACTTGTGTGGGCTTT-AAAAGGAGAAGGC
1 GTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAA-GA-AAGGC
703972 GTCCTGCTCTTTGAGGACTGAAAGTGCC-CTCAACTTGTGTGGGCTTT-----GAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGTGCCAC-CAACTTGTGTGGGCTTTGAAAAGAAAGGC
704026 GTCCTGCTCTTTGAGGACT-AAAG
1 GTCCTGCTCTTTGAGGACTGAAAG
704049 GGTGAAAGGA
Statistics
Matches: 171, Mismatches: 21, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
53 4 0.02
54 24 0.14
55 2 0.01
58 4 0.02
59 3 0.02
60 29 0.17
61 94 0.55
62 11 0.06
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (59 bp):
GTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAGGC
Found at i:704124 original size:94 final size:94
Alignment explanation
Indices: 703960--704144 Score: 261
Period size: 94 Copynumber: 2.0 Consensus size: 94
703950 GTGGGCTTTA
* * *
703960 AAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGAAAGTGCCCTCAACTTGTGTGGGCTTTGAAAGG
1 AAAGGAGAAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCCTCAACTTGTGTGGGCCTTAAAAGG
*
704025 CGTCCTGCTCTTTGAGGACT-AAAGGGTG
66 AGTCCTGCTCTTTGAGGACTGAAAGGGTG
*
704053 AAAGGAG-AGAGCATCCTTCTCTTTGAGGACT-ATGAAGTGCCAC-CAACTTGTGTGGGCCTTAA
1 AAAGGAGAAG-GCATCCTGCTCTTTGAGGACTGA--AAGTGCC-CTCAACTTGTGTGGGCCTTAA
704115 AAGGAGTCCTGCTCTTTGAGGACTGAAAGG
62 AAGGAGTCCTGCTCTTTGAGGACTGAAAGG
704145 TGCCACCAAC
Statistics
Matches: 82, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
92 3 0.04
93 26 0.32
94 47 0.57
95 6 0.07
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
AAAGGAGAAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCCTCAACTTGTGTGGGCCTTAAAAGG
AGTCCTGCTCTTTGAGGACTGAAAGGGTG
Found at i:704155 original size:55 final size:54
Alignment explanation
Indices: 704066--704198 Score: 196
Period size: 55 Copynumber: 2.4 Consensus size: 54
704056 GGAGAGAGCA
*
704066 TCCTTCTCTTTGAGGACTATGAA-GTGCCACCAACTTGTGTGGGCCTTAAAAGGAG
1 TCCTGCTCTTTGAGGACTA--AAGGTGCCACCAACTTGTGTGGGCCTTAAAAGGAG
* * *
704121 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCCTTAAAAGGAG
704176 TCCTGCTCTTTGAGGACTAAAGG
1 TCCTGCTCTTTGAGGACTAAAGG
704199 GTGAAAGGAG
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
54 7 0.10
55 64 0.89
56 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCCTTAAAAGGAG
Found at i:704196 original size:149 final size:149
Alignment explanation
Indices: 703908--704497 Score: 934
Period size: 149 Copynumber: 3.9 Consensus size: 149
703898 GCAAAAAGAA
* * * * *
703908 AGCATCCTACTCTTTGAGGA-TTGAAAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGAGAAGGC
1 AGCATCCTGCTCTTTGAGGACTAG-GAAGTGCCACCAACTTGTGTGGGCCTTAAAA-G-G-A---
703972 GTCCTGCTCTTTGAGGACTGAAA-GTGCC-CTCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
59 GTCCTGCTCTTTGAGGACTGAAAGGTGCCAC-CAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
704035 TTTGAGGACTAAAGGGTGAAAGGAGAG
123 TTTGAGGACTAAAGGGTGAAAGGAGAG
* *
704062 AGCATCCTTCTCTTTGAGGACTATGAAGTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGC
1 AGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGC
704127 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
66 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
704192 CTAAAGGGTGAAAGGAGAG
131 CTAAAGGGTGAAAGGAGAG
*
704211 AGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGC
1 AGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGC
* *
704276 TCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCGTGCTCTTTGAGGA
66 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
704341 CTAAAGGGTGAAAGGAGAG
131 CTAAAGGGTGAAAGGAGAG
* * * *
704360 AGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTTTGGGCCTTAAAAGGAGTCCTGT
1 AGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGC
* *
704425 TCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAAGA
66 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
704490 CTGAAAGG
131 CT-AAAGG
704498 TGCCACCAAC
Statistics
Matches: 416, Mismatches: 16, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
148 23 0.06
149 336 0.81
150 6 0.01
151 1 0.00
152 1 0.00
153 1 0.00
154 47 0.11
155 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (149 bp):
AGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGC
TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
CTAAAGGGTGAAAGGAGAG
Found at i:704279 original size:55 final size:56
Alignment explanation
Indices: 704214--704343 Score: 192
Period size: 55 Copynumber: 2.4 Consensus size: 56
704204 AGGAGAGAGC
*
704214 GTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCCTTAAAAGGA
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCCTTAAAAGGA
* * * *
704269 GTCCTGCTCTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCCTTAAAAGGA
*
704324 GTCGTGCTCTTTGAGGACTA
1 GTCCTGCTCTTTGAGGACTA
704344 AAGGGTGAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
54 4 0.06
55 61 0.92
56 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (56 bp):
GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCCTTAAAAGGA
Found at i:704334 original size:204 final size:204
Alignment explanation
Indices: 704066--704819 Score: 680
Period size: 204 Copynumber: 3.6 Consensus size: 204
704056 GGAGAGAGCA
* * * *
704066 TCCTTCTCTTTGAGGACT-ATGAA-GTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGCTC
1 TCCTGCTCTTTGAGGACTGA--AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
704129 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
64 TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
*
704194 AAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGC
129 AAAGGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGC
*
704259 CTTAAAAGGAG
194 TTTAAAAGGAG
* *
704270 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCGTGCTCTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * *
704335 TGAGGACT-AAAGGGTG--A--AA--------GG---AGAGA-GCGTCCTGCTCTTTGAGGACTG
66 TGAGGACTGAAA-AGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-
* * * * * * * * *
704383 GGAAGTGCCACCAACTTGTTTGGGCCTTAAAAGGAGTCCTGTTCTTTGAGGA-TTGAAAGGTGCC
129 -AAAGGGCGA--AA---G---GAG-----AGA-GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCC
* *
704447 ACCAACTTGTGTGGGCTTTGAAAGGCG
178 ACCAACTTGTGTGGGCTTTAAAAGGAG
*
704474 TCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGCGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--A----AAGGCGTCCT
* **
704539 GCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGATGTCCTGCTCTTTGA
60 GCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
*
704604 GGACTAAAGGGCGAAAGGAG-GAAGCGTCCTGCTCTTTGAGGACTAGGAAGCGCCACCAACTTGT
124 GGACTAAAGGGCGAAAGGAGAG-AGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGT
*
704668 GTGGGCTTTACAAAAAGAAAG
188 GTGGGCTTT---AAAAG-GAG
*
704689 CATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-----CCTGCTC
1 --TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
704748 TTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTTG
64 TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTCTTTG
704813 AGGACTA
123 AGGACTA
704820 GAAAAGTGGA
Statistics
Matches: 443, Mismatches: 49, Indels: 110
0.74 0.08 0.18
Matches are distributed among these distances:
188 21 0.05
189 3 0.01
190 5 0.01
192 4 0.01
195 1 0.00
198 2 0.00
200 2 0.00
202 1 0.00
203 11 0.02
204 186 0.42
205 18 0.04
206 1 0.00
210 49 0.11
211 43 0.10
212 8 0.02
213 1 0.00
214 5 0.01
215 3 0.01
217 47 0.11
220 1 0.00
223 4 0.01
225 6 0.01
226 2 0.00
227 19 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (204 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAA
AGGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTT
TAAAAGGAG
Found at i:704577 original size:62 final size:56
Alignment explanation
Indices: 704361--704608 Score: 313
Period size: 55 Copynumber: 4.4 Consensus size: 56
704351 AAAGGAGAGA
** * *
704361 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTTTGGGCCTT-AAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
* * * *
704416 GAGTCCTGTTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
* *
704471 GCGTCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGCGAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AA----AAG
704532 GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
1 GCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
**
704588 ATGTCCTGCTCTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
704609 AAAGGGCGAA
Statistics
Matches: 169, Mismatches: 16, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
55 93 0.55
56 22 0.13
57 1 0.01
60 2 0.01
61 23 0.14
62 28 0.17
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (56 bp):
GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
Found at i:704596 original size:117 final size:110
Alignment explanation
Indices: 704362--704613 Score: 319
Period size: 117 Copynumber: 2.2 Consensus size: 110
704352 AAGGAGAGAG
* * *
704362 CGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTTTGGGCCTTAAAAGGAGTCCTGTT
1 CGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGCT
* * * *
704426 CTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
65 CTTTGAGGATAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGA
* * *
704472 CGTCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGCGAAGGCGTC
1 CGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCCTT--AA----AAGGAGTC
704537 CTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGA
60 CTGCTCTTTGAGGA-TAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGA
*
704589 TGTCCTGCTCTTTGAGGACT-AAAGG
1 CGTCCTGCTCTTTGAGGACTGAAAGG
704614 GCGAAAGGAG
Statistics
Matches: 122, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
109 3 0.02
110 41 0.34
112 2 0.02
116 25 0.20
117 51 0.42
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (110 bp):
CGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCCTTAAAAGGAGTCCTGCTC
TTTGAGGATAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGA
Found at i:704725 original size:61 final size:59
Alignment explanation
Indices: 704625--704827 Score: 221
Period size: 61 Copynumber: 3.5 Consensus size: 59
704615 CGAAAGGAGG
* * *
704625 AAGCGTCCTGCTCTTTGAGGACT-AGGAAGCGCCACCAACTTGTGTGGGCTTTACAAAAAGA
1 AAGCATCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTA-AAAAA-A
704686 AAGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-------
1 AAGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAA
*
704738 AA--A-CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAA
1 AAGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAA-AAA
* *
704796 AGGCGTCCTGCTCTTTGAGGACTAGAAAAGTG
1 AAGCATCCTGCTCTTTGAGGACT-GAAAAGTG
704828 GAAGAAGAAG
Statistics
Matches: 121, Mismatches: 7, Indels: 27
0.78 0.05 0.17
Matches are distributed among these distances:
49 45 0.37
50 1 0.01
52 2 0.02
58 1 0.01
61 64 0.53
62 8 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (59 bp):
AAGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAA
Found at i:704768 original size:49 final size:49
Alignment explanation
Indices: 704692--704786 Score: 181
Period size: 49 Copynumber: 1.9 Consensus size: 49
704682 AAGAAAGCAT
*
704692 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAA
1 CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAA
704741 CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT
1 CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT
704787 GAAAAGAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (49 bp):
CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAA
Found at i:704770 original size:266 final size:259
Alignment explanation
Indices: 704216--704827 Score: 817
Period size: 266 Copynumber: 2.3 Consensus size: 259
704206 GAGAGAGCGT
* * *
704216 CCTGCTCTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCCTT--AA-AAGGAGTCCTGCT
1 CCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAGGCGTCCTGCT
* * * * *
704277 CTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCGTGCTCTTTGAGGA
65 CTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGA
* * * *
704341 CTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTTTGG
130 CTAAAGGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGCGCCACCAACTTGTGTGG
* * * *
704406 GCCTTAAAAGGAGTCCTGTTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
195 GCCTTAAAAGAAGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAA-
704471 GCG
259 --G
* *
704474 TCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGCGAAGGCGTCCT
1 -CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAA---GAAGGCGTCCT
*
704539 GCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGATGTCCTGCTCTTTGA
62 GCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGA
704604 GGACTAAAGGGCGAAAGGAG-GAAGCGTCCTGCTCTTTGAGGACTAGGAAGCGCCACCAACTTGT
127 GGACTAAAGGGCGAAAGGAGAG-AGCGTCCTGCTCTTTGAGGACTAGGAAGCGCCACCAACTTGT
*
704668 GTGGGCTTTACAAAAAGAAAGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGG
191 GTGGGCCTT---AAAAG-AAG--TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGG
704733 GCTTT-AAA-
250 GCTTTGAAAG
*
704741 CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
1 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG--AAGGCGTCCTG
704806 CTCTTTGAGGACTAGAAAAGTG
63 CTCTTTGAGGACTAGAAAAGTG
704828 GAAGAAGAAG
Statistics
Matches: 312, Mismatches: 23, Indels: 29
0.86 0.06 0.08
Matches are distributed among these distances:
259 40 0.13
260 1 0.00
261 2 0.01
264 1 0.00
265 22 0.07
266 189 0.61
267 3 0.01
269 5 0.02
270 2 0.01
271 3 0.01
272 44 0.14
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (259 bp):
CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAGGCGTCCTGCTC
TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGAC
TAAAGGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGCGCCACCAACTTGTGTGGG
CCTTAAAAGAAGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:724593 original size:13 final size:13
Alignment explanation
Indices: 724575--724613 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
724565 CATTTTTTCT
724575 TTGTATCGATACA
1 TTGTATCGATACA
724588 TTGTATCGATACA
1 TTGTATCGATACA
*
724601 CTGTATCGATACA
1 TTGTATCGATACA
724614 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:724777 original size:20 final size:20
Alignment explanation
Indices: 724734--724780 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
724724 AAATCTTTTG
724734 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
724755 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
724775 CAAAAT
1 CAAAAT
724781 CAGCTTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:726455 original size:32 final size:32
Alignment explanation
Indices: 726414--726477 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
726404 ATAAATTTTT
726414 GATATGAATTACTTGATAAAGGGGGAGATTTA
1 GATATGAATTACTTGATAAAGGGGGAGATTTA
726446 GATATGAATTACTTGATAAAGGGGGAGATTTA
1 GATATGAATTACTTGATAAAGGGGGAGATTTA
726478 TTAAAAAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.31
Consensus pattern (32 bp):
GATATGAATTACTTGATAAAGGGGGAGATTTA
Found at i:726536 original size:20 final size:22
Alignment explanation
Indices: 726501--726540 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
726491 AGAATGCGTG
726501 AATTATCTTATTAAGGGGGAGA
1 AATTATCTTATTAAGGGGGAGA
726523 AATTAT-TT-TTAAGGGGGA
1 AATTATCTTATTAAGGGGGA
726541 AATGAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 2 0.11
22 6 0.33
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.35
Consensus pattern (22 bp):
AATTATCTTATTAAGGGGGAGA
Found at i:727375 original size:13 final size:13
Alignment explanation
Indices: 727357--727382 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
727347 CAATTTTTTG
727357 TGTATCGATACAT
1 TGTATCGATACAT
727370 TGTATCGATACAT
1 TGTATCGATACAT
727383 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:727394 original size:32 final size:33
Alignment explanation
Indices: 727337--727400 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
727327 TACAAGCCAA
**
727337 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
727370 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
727401 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:732228 original size:38 final size:38
Alignment explanation
Indices: 732177--732253 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
732167 GTTAGAATCA
732177 TAAAAAATAACATGGATTGATTCTTCAACCACTAAGGT
1 TAAAAAATAACATGGATTGATTCTTCAACCACTAAGGT
732215 TAAAAAATAACATGGATTGATTCTTCAACCACTAAGGT
1 TAAAAAATAACATGGATTGATTCTTCAACCACTAAGGT
732253 T
1 T
732254 CTTTTGTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.30
Consensus pattern (38 bp):
TAAAAAATAACATGGATTGATTCTTCAACCACTAAGGT
Found at i:736195 original size:13 final size:13
Alignment explanation
Indices: 736177--736202 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
736167 CAATTTTTTG
736177 TGTATCGATACAT
1 TGTATCGATACAT
736190 TGTATCGATACAT
1 TGTATCGATACAT
736203 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:736214 original size:32 final size:33
Alignment explanation
Indices: 736157--736219 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
736147 TACAAGCCAA
**
736157 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
736190 TGTATCGATAC-ATACTTTGTGTATCGATAC
1 TGTATCGATACAATACTTTGTGTATCGATAC
736220 TAGTTTGGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:737200 original size:13 final size:13
Alignment explanation
Indices: 737182--737207 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
737172 TACACCAAGT
737182 ATGTATCGATACA
1 ATGTATCGATACA
737195 ATGTATCGATACA
1 ATGTATCGATACA
737208 TCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:737205 original size:32 final size:33
Alignment explanation
Indices: 737164--737227 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
737154 TAGCCAAACT
**
737164 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
*
737196 TGTATCGATACATCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
737228 TTGGCTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:738290 original size:53 final size:54
Alignment explanation
Indices: 738195--738309 Score: 135
Period size: 53 Copynumber: 2.1 Consensus size: 54
738185 ACAAAAGGGC
* *
738195 TAGAGTATCCCCGATTATGAAAAAAAAGTGTTCTAAAAAAATAA-AATCGGGGT
1 TAGAGTATCCCCGATTATGAAAAAAAAGTGTGCTAAAAAAATAAGAACCGGGGT
* ** * **
738248 TAGAGTATCCCCGATTAT-AAAAAAAATTGATGCTTTAGAAATAAGGGCCGGGGT
1 TAGAGTATCCCCGATTATGAAAAAAAAGTG-TGCTAAAAAAATAAGAACCGGGGT
738302 TAGAGTAT
1 TAGAGTAT
738310 TCCTGTGAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
52 10 0.19
53 28 0.54
54 14 0.27
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (54 bp):
TAGAGTATCCCCGATTATGAAAAAAAAGTGTGCTAAAAAAATAAGAACCGGGGT
Found at i:738411 original size:79 final size:79
Alignment explanation
Indices: 738245--738471 Score: 224
Period size: 79 Copynumber: 2.8 Consensus size: 79
738235 ATAAAATCGG
* * ** ** *
738245 GGTTAGAGTATCCCCGATTATAAAAAAAATTGATGCTTTAGAAATAAGGGCCGGGGTTAGAGTAT
1 GGTTGGAGTATCCCCGATTAT--GAAAAATTGATATTTTAGAAATAA-AACCGGGGTTGGAGTAT
* *
738310 -TCCT-GTGAAAATAACGG
63 CCCCTCG-G-AAATAACGA
* * * * * * ** * *
738327 GGTTGGAGTATCCTCGATTGTGAGAAATTGGTGTTTTGGAGCTAAAATCGGTGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTATCCC
738392 CTCGGAAATAACGA
66 CTCGGAAATAACGA
738406 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTATCCC
738471 C
66 C
738472 GATTATGAAA
Statistics
Matches: 116, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
79 76 0.66
80 21 0.18
81 1 0.01
82 18 0.16
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (79 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGTATCCC
CTCGGAAATAACGA
Found at i:738469 original size:51 final size:51
Alignment explanation
Indices: 738406--738522 Score: 207
Period size: 51 Copynumber: 2.3 Consensus size: 51
738396 GAAATAACGA
738406 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGG
* * *
738457 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGG
738508 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
738523 TCGAAAATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGG
Found at i:738475 original size:130 final size:130
Alignment explanation
Indices: 738324--738575 Score: 405
Period size: 130 Copynumber: 1.9 Consensus size: 130
738314 GTGAAAATAA
* * * * * * *
738324 CGGGGTTGGAGTATCCTCGATTGTGAGAAATTGGTGTTTTGGAGCTAAAATCGGTGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAATCGGGGTTGGAGTAT
*
738389 CCCCTCGGAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAC
66 CCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAC
738454 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAATCGGGGTTGGAGTAT
* * *
738519 CCCCTCGAAAATAACGGGGTTGGAGTATCCTCGATTATGAAAAATTGATGTTTTAGA
66 CCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGA
738576 GATATGGAGT
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
130 111 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (130 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAATCGGGGTTGGAGTAT
CCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAC
Found at i:738540 original size:79 final size:78
Alignment explanation
Indices: 738454--738714 Score: 396
Period size: 79 Copynumber: 3.4 Consensus size: 78
738444 GAAATAAAAC
738454 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAA-CGGGGTTGGAGTAT
738519 CCCCTCGAAAATAA
65 CCCCTCGAAAATAA
*
738533 CGGGGTTGGAGTATCCTCGATTATGAAAAATTGATGTTTTAGAGAT---A------TGGAGTATC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACGGGGTTGGAGTATC
*
738589 CCCTCGGAAATAA
66 CCCTCGAAAATAA
* *
738602 CGGGGTTGGAGTATCCCCAATTATGAAAAATTGATGTTTTAGAGAAAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAA-CGGGGTTGGAGTAT
738667 CCCCTCGAAAATAA
65 CCCCTCGAAAATAA
*
738681 CGGGGTTGGAGTATCCCCGATTATGAGAAATTGA
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGA
738715 GAAAATTAAA
Statistics
Matches: 164, Mismatches: 8, Indels: 20
0.85 0.04 0.10
Matches are distributed among these distances:
69 64 0.39
72 1 0.01
76 1 0.01
79 98 0.60
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACGGGGTTGGAGTATC
CCCTCGAAAATAA
Found at i:738685 original size:28 final size:28
Alignment explanation
Indices: 738645--738698 Score: 92
Period size: 28 Copynumber: 1.9 Consensus size: 28
738635 ATGTTTTAGA
738645 GAAAAAACCGGGGTTGGAGTATCCCCTC
1 GAAAAAACCGGGGTTGGAGTATCCCCTC
738673 GAAAATAA-CGGGGTTGGAGTATCCCC
1 GAAAA-AACCGGGGTTGGAGTATCCCC
738699 GATTATGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 23 0.92
29 2 0.08
ACGTcount: A:0.30, C:0.22, G:0.30, T:0.19
Consensus pattern (28 bp):
GAAAAAACCGGGGTTGGAGTATCCCCTC
Found at i:740159 original size:35 final size:35
Alignment explanation
Indices: 740113--740597 Score: 889
Period size: 35 Copynumber: 13.9 Consensus size: 35
740103 TTCATTTTTT
740113 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
*
740148 ATGCCCATCATTCCATGCCTCCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
*
740183 ATGCCCATCATTCCATGCCTCCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
740218 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
740253 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
*
740288 ATGCCCATCATTCCATGCCTCCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
740323 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
*
740358 ATGCCCATCATTCCATGCCTCCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
740393 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
740428 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
*
740463 ATGCCCATCATTCCATGCCTCCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
740498 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
* *
740533 ATGCCCATCATTCCATGCCTTCATTTTGATATTTC
1 ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
* *
740568 ATGCCCATCATTCCATGCCTTTATTGTTAT
1 ATGCCCATCATTCCATGCCTTCATTTTTAT
740598 TTTTTTTAAT
Statistics
Matches: 437, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 437 1.00
ACGTcount: A:0.20, C:0.32, G:0.06, T:0.42
Consensus pattern (35 bp):
ATGCCCATCATTCCATGCCTTCATTTTTATATTCC
Found at i:740629 original size:13 final size:13
Alignment explanation
Indices: 740600--740640 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
740590 ATTGTTATTT
740600 TTTTTAATTTTAA
1 TTTTTAATTTTAA
740613 -TTTTAATTTTAA
1 TTTTTAATTTTAA
* *
740625 TTTTTGATTTTTA
1 TTTTTAATTTTAA
740638 TTT
1 TTT
740641 ATTACTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 12 0.48
13 13 0.52
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (13 bp):
TTTTTAATTTTAA
Found at i:740635 original size:6 final size:6
Alignment explanation
Indices: 740601--740628 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
740591 TTGTTATTTT
740601 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
740629 TGATTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:741428 original size:27 final size:28
Alignment explanation
Indices: 741384--741484 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 28
741374 CTTTTTCCTA
*
741384 AAGTCC-ACAACTCCGTGGCACCCTTTT
1 AAGTCCGACAACTCTGTGGCACCCTTTT
*
741411 AAG-CCGACAACTCTGTGGCACCCTTTCA
1 AAGTCCGACAACTCTGTGGCACCCTTT-T
* *
741439 AAGTCCG-CAATTCTGTGGCATCTCTTTT
1 AAGTCCGACAACTCTGTGGCA-CCCTTTT
741467 AAAGTCC-ACAACTCTGTG
1 -AAGTCCGACAACTCTGTG
741485 ACACTGTTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
26 2 0.03
27 22 0.35
28 15 0.24
29 23 0.37
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.28
Consensus pattern (28 bp):
AAGTCCGACAACTCTGTGGCACCCTTTT
Found at i:741471 original size:29 final size:29
Alignment explanation
Indices: 741382--742157 Score: 297
Period size: 32 Copynumber: 26.4 Consensus size: 29
741372 ATCTTTTTCC
* *
741382 TAAAGTCCACAACTCCGTGGCA-CCCTTT
1 TAAAGTCCACAACTCTGTGGCATCTCTTT
*
741410 T-AAG-CCGACAACTCTGTGGCA-CCCTTT
1 TAAAGTCC-ACAACTCTGTGGCATCTCTTT
* * *
741437 CAAAGTCCGCAATTCTGTGGCATCTCTTT
1 TAAAGTCCACAACTCTGTGGCATCTCTTT
* * *
741466 TAAAGTCCACAACTCTGTGACACTGTTTTCT
1 TAAAGTCCACAACTCTGTGGCA-TCTCTT-T
*
741497 TCAAAGTCCATAACTCTGTGGCATCTCTTT
1 T-AAAGTCCACAACTCTGTGGCATCTCTTT
* * * * *
741527 TAAAGTCCATAATTCTGTGGGACCTTTTTAT
1 TAAAGTCCACAACTCTGTGGCATC-TCTT-T
* * *
741558 TCAAAGTCCACAACTCTATGGCACCCCTTT
1 T-AAAGTCCACAACTCTGTGGCATCTCTTT
* * *
741588 TCAAAGTCCATAACT-TCGTGACA-CCCTTT
1 T-AAAGTCCACAACTCT-GTGGCATCTCTTT
*
741617 T-AA-TCCACAACT-TCGTGGCACCCTCTTT
1 TAAAGTCCACAACTCT-GTGGCA-TCTCTTT
* ** * * *
741645 TAAATTAAATAACT-TCATGGCA-CCCTTT
1 TAAAGTCCACAACTCT-GTGGCATCTCTTT
* *
741673 CAAAGTCCACAACTCTATGGCATCTCTTT
1 TAAAGTCCACAACTCTGTGGCATCTCTTT
* * * *
741702 TAAAGTCCACAACTTTGTGCCACCTTTTTCT
1 TAAAGTCCACAACTCTGTGGCATC-TCTT-T
* * * * *
741733 TCAAAGTCCATAACTTTTTGGCACCCCCTTT
1 T-AAAGTCCACAACTCTGTGGCA-TCTCTTT
* * *
741764 TAAAGTCCATAACTCCGTGGCA-CTCTGT
1 TAAAGTCCACAACTCTGTGGCATCTCTTT
* *
741792 T-AAGCCCAAAACT-TCGTGGCATC-CTTT
1 TAAAGTCCACAACTCT-GTGGCATCTCTTT
* ** * * *
741819 CAAAGTAGACTACTCTATGGCATCTTTTT
1 TAAAGTCCACAACTCTGTGGCATCTCTTT
* * * *
741848 TAAAGTCTACAACT-TCATGGCACCTTTTTCT
1 TAAAGTCCACAACTCT-GTGGCATC-TCTT-T
* *
741879 TCAAAGTCCATAACTCTGTGGCA-CATTTTTCT
1 T-AAAGTCCACAACTCTGTGGCATC--TCTT-T
*
741911 TCAAAGTCCACAACTCTGTGGCACCGTCTTT
1 T-AAAGTCCACAACTCTGTGGCATC-TCTTT
* * *
741942 TAAAGTCCACAACTC---CGCAACACATTT
1 TAAAGTCCACAACTCTGTGGCATCTC-TTT
* *** *
741969 TCAAAGTCCATAACTCCACGGCATCTTTTT
1 T-AAAGTCCACAACTCTGTGGCATCTCTTT
* * * * *
741999 TAGAGTCCACAACCCCGTGGCACCTTTTTCTT
1 TAAAGTCCACAACTCTGTGGCA--TCTCT-TT
* * *
742031 TAATGTCCACAACT-TCGTGGCACCCCTTTT
1 TAAAGTCCACAACTCT-GTGGCATCTC-TTT
* *
742061 TAAAGTTCACAACTCTGTGGCA-CCCTTT
1 TAAAGTCCACAACTCTGTGGCATCTCTTT
* * * * *
742089 TAGA-TTCATAACTCTATGGCA-CCCTTT
1 TAAAGTCCACAACTCTGTGGCATCTCTTT
* * * * *
742116 TTAAGTCTACAACT-TCATAGCACCCTCTTT
1 TAAAGTCCACAACTCT-GTGGCA-TCTCTTT
742146 TAAAGTCCACAA
1 TAAAGTCCACAA
742158 TTCCGTAACA
Statistics
Matches: 583, Mismatches: 117, Indels: 94
0.73 0.15 0.12
Matches are distributed among these distances:
26 18 0.03
27 75 0.13
28 93 0.16
29 120 0.21
30 119 0.20
31 29 0.05
32 125 0.21
33 4 0.01
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (29 bp):
TAAAGTCCACAACTCTGTGGCATCTCTTT
Found at i:741504 original size:32 final size:30
Alignment explanation
Indices: 741434--741611 Score: 107
Period size: 29 Copynumber: 5.9 Consensus size: 30
741424 TGTGGCACCC
* * * *
741434 TTTCAAAGTCCGCAATTCTGTGGCA-TCTCT
1 TTTCAAAGTCCACAACTCTGTGACACT-TTT
741464 TTT-AAAGTCCACAACTCTGTGACACTGTTT
1 TTTCAAAGTCCACAACTCTGTGACACT-TTT
* * *
741494 TCTTCAAAGTCCATAACTCTGTGGCA-TCTCT
1 T-TTCAAAGTCCACAACTCTGTGACACT-TTT
* *
741525 TTT-AAAGTCCATAATTCTGTGGGAC-CTTTT
1 TTTCAAAGTCCACAACTCTGT--GACACTTTT
* * ***
741555 TATTCAAAGTCCACAACTCTATGGCACCCCT
1 T-TTCAAAGTCCACAACTCTGTGACACTTTT
*
741586 TTTCAAAGTCCATAACT-TCGTGACAC
1 TTTCAAAGTCCACAACTCT-GTGACAC
741612 CCTTTTAATC
Statistics
Matches: 116, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
29 35 0.30
30 34 0.29
31 14 0.12
32 33 0.28
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.35
Consensus pattern (30 bp):
TTTCAAAGTCCACAACTCTGTGACACTTTT
Found at i:741515 original size:61 final size:59
Alignment explanation
Indices: 741383--742079 Score: 350
Period size: 61 Copynumber: 11.8 Consensus size: 59
741373 TCTTTTTCCT
* * **
741383 AAAGTCCACAACTCCGTGGCACC-CTTTT-AAG-CCGACAACTCTGTGGCAC--CCTTTC
1 AAAGTCCACAACTCTGTGGCACCTCTTTTAAAGTCC-ACAACTCTGTGACACTTTTTTTC
* * *
741438 AAAGTCCGCAATTCTGTGGCATCTCTTTTAAAGTCCACAACTCTGTGACACTGTTTTCTTC
1 AAAGTCCACAACTCTGTGGCACCTCTTTTAAAGTCCACAACTCTGTGACACT-TTTT-TTC
* * * *
741499 AAAGTCCATAACTCTGTGGCATCTCTTTTAAAGTCCATAATTCTGTGGGAC-CTTTTTATTC
1 AAAGTCCACAACTCTGTGGCACCTCTTTTAAAGTCCACAACTCTGT--GACACTTTTT-TTC
* * * **
741560 AAAGTCCACAACTCTATGGCACCCCTTTTCAAAGTCCATAACT-TCGTGACAC-CCTTTT-
1 AAAGTCCACAACTCTGTGGCACCTCTTTT-AAAGTCCACAACTCT-GTGACACTTTTTTTC
* ** * **
741618 -AA-TCCACAACT-TCGTGGCACCCTCTTTTAAATTAAATAACTTCATG-G-CAC--CCTTTC
1 AAAGTCCACAACTCT-GTGGCA-CCTCTTTTAAAGTCCACAAC-TC-TGTGACACTTTTTTTC
* * * *
741674 AAAGTCCACAACTCTATGGCATCTCTTTTAAAGTCCACAACTTTGTGCCACCTTTTTCTTC
1 AAAGTCCACAACTCTGTGGCACCTCTTTTAAAGTCCACAACTCTGTGACA-CTTTTT-TTC
* * * * * * * * *
741735 AAAGTCCATAACTTTTTGGCACCCCCTTTTAAAGTCCATAACTCCGTGGCAC-TCTGTT-
1 AAAGTCCACAACTCTGTGGCA-CCTCTTTTAAAGTCCACAACTCTGTGACACTTTTTTTC
* * * * ** * * *
741793 -AAGCCCAAAACT-TCGTGGCATC-CTTTCAAAGTAGACTACTCTATGGCA-TCTTTTTT-
1 AAAGTCCACAACTCT-GTGGCACCTCTTTTAAAGTCCACAACTCTGTGACACT-TTTTTTC
* * * * *
741849 AAAGTCTACAACT-TCATGGCACCTTTTTCTTCAAAGTCCATAACTCTGTGGCACATTTTTCTTC
1 AAAGTCCACAACTCT-GTGGCACC-TCTT-TT-AAAGTCCACAACTCTGTGACAC-TTTTT-TTC
* ** *
741913 AAAGTCCACAACTCTGTGGCACCGTCTTTTAAAGTCCACAACTCCGCAACAC--ATTTTC
1 AAAGTCCACAACTCTGTGGCACC-TCTTTTAAAGTCCACAACTCTGTGACACTTTTTTTC
* *** * * * * * * *
741971 AAAGTCCATAACTCCACGGCATCTTTTTTAGAGTCCACAACCCCGTGGCACCTTTTTCTTT
1 AAAGTCCACAACTCTGTGGCACCTCTTTTAAAGTCCACAACTCTGTGACA-CTTTTT-TTC
* * *
742032 AATGTCCACAACT-TCGTGGCACCCCTTTTTAAAGTTCACAACTCTGTG
1 AAAGTCCACAACTCT-GTGGCACCTC-TTTTAAAGTCCACAACTCTGTG
742080 GCACCCTTTT
Statistics
Matches: 489, Mismatches: 106, Indels: 87
0.72 0.16 0.13
Matches are distributed among these distances:
55 45 0.09
56 39 0.08
57 100 0.20
58 40 0.08
59 10 0.02
60 12 0.02
61 134 0.27
62 78 0.16
63 8 0.02
64 22 0.04
65 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (59 bp):
AAAGTCCACAACTCTGTGGCACCTCTTTTAAAGTCCACAACTCTGTGACACTTTTTTTC
Found at i:741700 original size:175 final size:174
Alignment explanation
Indices: 741496--741958 Score: 506
Period size: 175 Copynumber: 2.6 Consensus size: 174
741486 CACTGTTTTC
* * * *
741496 TTCAAAGTCCATAACTCTGTGGCATCTCTTTTAAAGTCCATAATTCTGTGGGACCTTTTTATTCA
1 TTCAAAGTCCACAACTCTATGGCATCTCTTTTAAAGTCCATAATTCTGTGGCACCTTTTTCTTCA
* * * *
741561 AAGTCCACAACTCTATGGCACCCCTTTTCAAAGTCCATAACTTCGTGACACCCTTTTAA-TCCAC
66 AAGTCCACAACTCTATGGCACCCCTTTT-AAAGTCCATAACTCCGTGACACCCTGTTAAGCCCAA
* *
741625 AACTTCGTGGCACCCTCTTTTAAATTA-AATAACT-TCATGGCA-CCCT
130 AACTTCGTGGCA-CC-CTTTCAAAGTAGAAT-ACTCT-ATGGCATCCCT
* *
741671 TTCAAAGTCCACAACTCTATGGCATCTCTTTTAAAGTCCACAACTT-TGTGCCACCTTTTTCTTC
1 TTCAAAGTCCACAACTCTATGGCATCTCTTTTAAAGTCCATAA-TTCTGTGGCACCTTTTTCTTC
* * * * *
741735 AAAGTCCATAACTTTTTGGCACCCCCTTTTAAAGTCCATAACTCCGTGGCACTCTGTTAAGCCCA
65 AAAGTCCACAACTCTATGGCA-CCCCTTTTAAAGTCCATAACTCCGTGACACCCTGTTAAGCCCA
* * **
741800 AAACTTCGTGGCATCCTTTCAAAGTAGACTACTCTATGGCATCTTT
129 AAACTTCGTGGCACCCTTTCAAAGTAGAATACTCTATGGCATCCCT
* * * * * *
741846 TTTAAAGTCTACAACT-TCATGGCACCTTTTTCTTCAAAGTCCATAACTCTGTGGCACATTTTTC
1 TTCAAAGTCCACAACTCT-ATGGCATC-TCTT-TT-AAAGTCCATAATTCTGTGGCACCTTTTTC
* * *
741910 TTCAAAGTCCACAACTCTGTGGCACCGTCTTTTAAAGTCCACAACTCCG
62 TTCAAAGTCCACAACTCTATGGCACC-CCTTTTAAAGTCCATAACTCCG
741959 CAACACATTT
Statistics
Matches: 242, Mismatches: 34, Indels: 21
0.81 0.11 0.07
Matches are distributed among these distances:
174 19 0.08
175 126 0.52
176 28 0.12
177 5 0.02
178 64 0.26
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (174 bp):
TTCAAAGTCCACAACTCTATGGCATCTCTTTTAAAGTCCATAATTCTGTGGCACCTTTTTCTTCA
AAGTCCACAACTCTATGGCACCCCTTTTAAAGTCCATAACTCCGTGACACCCTGTTAAGCCCAAA
ACTTCGTGGCACCCTTTCAAAGTAGAATACTCTATGGCATCCCT
Found at i:741818 original size:146 final size:147
Alignment explanation
Indices: 741463--742083 Score: 474
Period size: 146 Copynumber: 4.2 Consensus size: 147
741453 GTGGCATCTC
* * * * *
741463 TTTTAAAGTCCACAACTCTGTGACACTGTTTTCTTCAAAGTCCATAAC-TCTGTGGCATCTCTTT
1 TTTTAAAGTCCACAACTCTGTGGCAC-G-TCTGTT-AAAGCCCAAAACTTC-GTGGCA-C-CTTT
* * * * * * * **
741527 TAAAGTCCATAATTCTGTGGGACCTTTTTATTCAAAGTCCACAAC-TCTATGGCACC-CCTT-TT
60 CAAAGTCCACAACTCTATGGCATC-TTTT-TT-AAAGTCCACAACTTC-GTGGCACCTTTTTCTT
* *
741589 CAAAGTCCATAACTTCGTGACA-CCC-
121 CAAAGTCCATAACTTTGTGGCACCCCT
* * *** *
741614 TTTT-AA-TCCACAACT-TCGTGGCACCCTCTTTTAAA-TTAAATAACTTCATGGCACCCTTTCA
1 TTTTAAAGTCCACAACTCT-GTGGCA-CGTCTGTTAAAGCCCAA-AACTTCGTGGCA-CCTTTCA
* * *
741675 AAGTCCACAACTCTATGGCATCTCTTTTAAAGTCCACAACTTTGTGCCACCTTTTTCTTCAAAGT
62 AAGTCCACAACTCTATGGCATCTTTTTTAAAGTCCACAACTTCGTGGCACCTTTTTCTTCAAAGT
* *
741740 CCATAACTTTTTGGCACCCCC
127 CCATAACTTTGTGGCACCCCT
* *
741761 TTTTAAAGTCCATAACTCCGTGGCAC-TCTGTT-AAGCCCAAAACTTCGTGGCATCCTTTCAAAG
1 TTTTAAAGTCCACAACTCTGTGGCACGTCTGTTAAAGCCCAAAACTTCGTGGCA-CCTTTCAAAG
** * * *
741824 TAGACTACTCTATGGCATCTTTTTTAAAGTCTACAACTTCATGGCACCTTTTTCTTCAAAGTCCA
65 TCCACAACTCTATGGCATCTTTTTTAAAGTCCACAACTTCGTGGCACCTTTTTCTTCAAAGTCCA
* ***
741889 TAACTCTGTGGCACATTT
130 TAACTTTGTGGCACCCCT
* * * * *** *
741907 TTCTTCAAAGTCCACAACTCTGTGGCACCGTCTTTTAAAGTCCACAACTCCGCAACACATTTTCA
1 TT-TT-AAAGTCCACAACTCTGTGGCA-CGTCTGTTAAAGCCCAAAACTTCGTGGCAC-CTTTCA
* * * * ** * *
741972 AAGTCCATAACTCCACGGCATCTTTTTTAGAGTCCACAACCCCGTGGCACCTTTTTCTTTAATGT
62 AAGTCCACAACTCTATGGCATCTTTTTTAAAGTCCACAACTTCGTGGCACCTTTTTCTTCAAAGT
* *
742037 CCACAACTTCGTGGCACCCCT
127 CCATAACTTTGTGGCACCCCT
*
742058 TTTTAAAGTTCACAACTCTGTGGCAC
1 TTTTAAAGTCCACAACTCTGTGGCAC
742084 CCTTTTAGAT
Statistics
Matches: 375, Mismatches: 76, Indels: 41
0.76 0.15 0.08
Matches are distributed among these distances:
143 18 0.05
144 5 0.01
145 24 0.06
146 121 0.32
147 25 0.07
148 30 0.08
149 49 0.13
150 11 0.03
151 92 0.25
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (147 bp):
TTTTAAAGTCCACAACTCTGTGGCACGTCTGTTAAAGCCCAAAACTTCGTGGCACCTTTCAAAGT
CCACAACTCTATGGCATCTTTTTTAAAGTCCACAACTTCGTGGCACCTTTTTCTTCAAAGTCCAT
AACTTTGTGGCACCCCT
Found at i:742101 original size:27 final size:28
Alignment explanation
Indices: 742029--742129 Score: 91
Period size: 27 Copynumber: 3.6 Consensus size: 28
742019 CACCTTTTTC
* *
742029 TTTAATGTCCACAACT-TCGTGGCACCCCTT
1 TTTAAAGTTCACAACTCT-GTGGCA-CCC-T
742059 TTTAAAGTTCACAACTCTGTGGCACCCT
1 TTTAAAGTTCACAACTCTGTGGCACCCT
* * *
742087 TTTAGA-TTCATAACTCTATGGCACCCT
1 TTTAAAGTTCACAACTCTGTGGCACCCT
*
742114 TTTTAAG-TCTACAACT
1 TTTAAAGTTC-ACAACT
742130 TCATAGCACC
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
27 25 0.42
28 11 0.18
29 3 0.05
30 20 0.33
31 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.36
Consensus pattern (28 bp):
TTTAAAGTTCACAACTCTGTGGCACCCT
Found at i:742148 original size:382 final size:379
Alignment explanation
Indices: 741382--742163 Score: 800
Period size: 382 Copynumber: 2.0 Consensus size: 379
741372 ATCTTTTTCC
* * * *
741382 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGCCGACAACTCTGTGGCACCCTTTCAAAGTCCGC
1 TAAAGTCCACAACTCCGTGGCACCCTGTTAAGCCCAAAACTCTGTGGCACCCTTTCAAAGTCAGC
* *
741447 AATTCTGTGGCATCTCTTTTAAAGTCCACAACTCTGTGACACTGTTTTCTTCAAAGTCCATAACT
66 AACTCTATGGCATCTCTTTTAAAGTCCACAACTCTGTGACACTGTTTTCTTCAAAGTCCATAACT
* * * * *
741512 CTGTGGCATCTCTTTTAAAGTCCATAATTCTGTGGGACCTTTTTATTCAAAGTCCACAACTCTAT
131 CTGTGGCATCTCTTTTAAAGTCCACAACTCTGTGGCACCGTCTTATTCAAAGTCCACAACTC--T
* * * * ** **
741577 GGCACCCCTTTTCAAAGTCCATAACTTCGTGACACCCTTTTAATCCACAACTTCGTGGCACCCTC
194 CGCACACATTTTCAAAGTCCATAACTCCACGACACCCTTTTAATCCACAACCCCGTGGCACCCTC
* *
741642 TTTTAAATTAAATAACTTCATGGCACCCTTTCAAAGTCCACAACTCTATGGCATCTCTTTTAAAG
259 TTTTAAATTAAACAACTTCATGGCACCCTTTCAAAGTCCACAACTCTATGGCATCCCTTTTAAAG
* * * * ** *
741707 TCCACAACTTTGTGCCACCTTTTTCTTCAAAGTCCATAACTTTTTGGCACCCCCTTT
324 TCCACAACTCTATGCCACCTCTTTCTT-AAAGTCCACAACTTCATAGCACCCCCTTT
* * *
741764 TAAAGTCCATAACTCCGTGGCACTCTGTTAAGCCCAAAACT-TCGTGGCATCCTTTCAAAGT-AG
1 TAAAGTCCACAACTCCGTGGCACCCTGTTAAGCCCAAAACTCT-GTGGCACCCTTTCAAAGTCAG
* * *
741827 ACTACTCTATGGCATCTTTTTTAAAGTCTACAACTTCATG-G-CACCT-TTTTCTTCAAAGTCCA
65 -CAACTCTATGGCATCTCTTTTAAAGTCCACAAC-TC-TGTGACA-CTGTTTTCTTCAAAGTCCA
*
741889 TAACTCTGTGGCA-CATTTTTCTTCAAAGTCCACAACTCTGTGGCACCGTCTT-TT-AAAGTCCA
126 TAACTCTGTGGCATC--TCTT-TT-AAAGTCCACAACTCTGTGGCACCGTCTTATTCAAAGTCCA
* **
741951 CAACTC-CGCAACACATTTTCAAAGTCCATAACTCCACGGCATCTTTTTTAGAGTCCACAACCCC
187 CAACTCTCGC-ACACATTTTCAAAGTCCATAACTCCACGACA-CCCTTTTA-A-TCCACAACCCC
* * * ** * * * *
742015 GTGGCACCTTTTTCTTTAATGTCCACAACTTCGTGGCACCCCTTTTTAAAGTTCACAACTCTGTG
248 GTGGCACCCTCTT-TTAAAT-TAAACAACTTCATGGCA-CCC-TTTCAAAGTCCACAACTCTATG
* * * * *
742080 GCA-CCCTTTTAGA-TTCATAACTCTATGGCACC-CTTT-TT-AAGTCTACAACTTCATAGCACC
309 GCATCCCTTTTAAAGTCCACAACTCTATGCCACCTCTTTCTTAAAGTCCACAACTTCATAGCACC
*
742140 CTCTTT
374 CCCTTT
*
742146 TAAAGTCCACAATTCCGT
1 TAAAGTCCACAACTCCGT
742164 AACACCCTTT
Statistics
Matches: 328, Mismatches: 55, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
380 2 0.01
381 28 0.09
382 156 0.48
383 23 0.07
384 28 0.09
385 31 0.09
386 27 0.08
387 11 0.03
388 22 0.07
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (379 bp):
TAAAGTCCACAACTCCGTGGCACCCTGTTAAGCCCAAAACTCTGTGGCACCCTTTCAAAGTCAGC
AACTCTATGGCATCTCTTTTAAAGTCCACAACTCTGTGACACTGTTTTCTTCAAAGTCCATAACT
CTGTGGCATCTCTTTTAAAGTCCACAACTCTGTGGCACCGTCTTATTCAAAGTCCACAACTCTCG
CACACATTTTCAAAGTCCATAACTCCACGACACCCTTTTAATCCACAACCCCGTGGCACCCTCTT
TTAAATTAAACAACTTCATGGCACCCTTTCAAAGTCCACAACTCTATGGCATCCCTTTTAAAGTC
CACAACTCTATGCCACCTCTTTCTTAAAGTCCACAACTTCATAGCACCCCCTTT
Found at i:742283 original size:33 final size:33
Alignment explanation
Indices: 742208--742357 Score: 128
Period size: 33 Copynumber: 4.7 Consensus size: 33
742198 CTTTTTTTTT
** * *
742208 AAGCCCACACAA-TCGGTGGCAA-CCCTCTCAA
1 AAGCCCACACAAGTCAATGGCAACCCCTTTCTA
* * ** *
742239 AAG-GCACATAAGTCAATGGCAACCTTTTTTTA
1 AAGCCCACACAAGTCAATGGCAACCCCTTTCTA
* * *
742271 AAGCCCACATAAGTCGATGACAACCCCTTTCTA
1 AAGCCCACACAAGTCAATGGCAACCCCTTTCTA
* * *
742304 AAGCCTATACAAGTCGATGGCAACCCCTTTCT-
1 AAGCCCACACAAGTCAATGGCAACCCCTTTCTA
*
742336 AAGCCCACACAAGTCAGTGGCA
1 AAGCCCACACAAGTCAATGGCA
742358 TTTCCTTCTA
Statistics
Matches: 93, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
30 6 0.06
31 11 0.12
32 25 0.27
33 51 0.55
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.21
Consensus pattern (33 bp):
AAGCCCACACAAGTCAATGGCAACCCCTTTCTA
Found at i:742629 original size:103 final size:103
Alignment explanation
Indices: 742366--742759 Score: 282
Period size: 103 Copynumber: 3.8 Consensus size: 103
742356 CATTTCCTTC
* * * * * *
742366 TAAGCCCAATGTCGTTGGCTTTGAATCAACATATTGGCATCTTTT-TCATCTTTAAGTCTGATAT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-CTTTTGT-ATCTTTAAGTCTGATGT
* * * * * * * * *
742430 CACTGGCATTAAATTAACATATTGGCACCT-TCATCATTTT
64 CGCTAGCCTTGAATCAGCACACTAGCACCTCT-ATCATTTT
* * * *
742470 TAAGCCCAATGTTGCTAACCTTG-ATCAGCACATTGGCATTCTTTT-TTTTTTCTAAGTCT-AGT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCA--CTTTTGTATCTT-TAAGTCTGA-T
* * * *
742532 GTTGCTAGCCTTGAATCAGCACACTA-CACTTTTGTCATTTT
62 GTCGCTAGCCTTGAATCAGCACACTAGCACCTCTATCATTTT
*
742573 TAAGCCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACTTTTGTCATCTTTAAGTCTGATGTC
1 TAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTTTTGT-ATCTTTAAGTCTGATGTC
* * * * *
742638 GCTGGCCTTGAATTAGCATATTAGCACCTCTAT-TTTTT
65 GCTAGCCTTGAATCAGCACACTAGCACCTCTATCATTTT
* ** * * ** * *
742676 TAAACCCAATGTCATTGGCCTTGAATCAGCACATTGGAACCCTTGTTATCTTTAAGTC-CACTAT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTTTTG-TATCTTTAAGTCTGA-TGT
* *
742740 CGCTGGCTTTGAATCAGCAC
64 CGCTAGCCTTGAATCAGCAC
742760 TTTGGCACCC
Statistics
Matches: 230, Mismatches: 49, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
102 6 0.03
103 150 0.65
104 74 0.32
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (103 bp):
TAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTTTTGTATCTTTAAGTCTGATGTCG
CTAGCCTTGAATCAGCACACTAGCACCTCTATCATTTT
Found at i:742637 original size:52 final size:51
Alignment explanation
Indices: 742398--742664 Score: 189
Period size: 52 Copynumber: 5.2 Consensus size: 51
742388 GAATCAACAT
* * * * * * * * *
742398 ATTGGCATCTTTTTCATCTTTAAGTCTGATATCACTGGCATTAAATTAACAT
1 ATTGGCA-CTTTTTCATTTTTAAGTCTAATGTCGCTAGCCTTGAATTAGCAC
** * * * * *
742450 ATTGGCACCTTCATCATTTTTAAGCCCAATGTTGCTAACCTTG-ATCAGCAC
1 ATTGGCA-CTTTTTCATTTTTAAGTCTAATGTCGCTAGCCTTGAATTAGCAC
* * * *
742501 ATTGGCATTCTTTTT-TTTTTCTAAGTCTAGTGTTGCTAGCCTTGAATCAGCAC
1 ATTGGCA--CTTTTTCATTTT-TAAGTCTAATGTCGCTAGCCTTGAATTAGCAC
* * * *
742554 ACT-ACACTTTTGTCATTTTTAAGCCCAATGTCGCTAGCCTTGAATTAGCAC
1 ATTGGCACTTTT-TCATTTTTAAGTCTAATGTCGCTAGCCTTGAATTAGCAC
* * * *
742605 ATTGGCACTTTTGTCATCTTTAAGTCTGATGTCGCTGGCCTTGAATTAGCAT
1 ATTGGCACTTTT-TCATTTTTAAGTCTAATGTCGCTAGCCTTGAATTAGCAC
*
742657 ATTAGCAC
1 ATTGGCAC
742665 CTCTATTTTT
Statistics
Matches: 167, Mismatches: 42, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
50 5 0.03
51 46 0.28
52 106 0.63
53 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (51 bp):
ATTGGCACTTTTTCATTTTTAAGTCTAATGTCGCTAGCCTTGAATTAGCAC
Found at i:742817 original size:52 final size:52
Alignment explanation
Indices: 742571--742818 Score: 189
Period size: 52 Copynumber: 4.8 Consensus size: 52
742561 TTTTGTCATT
* * * * * ** *
742571 TTTAAGCCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACTTTTGTCATC
1 TTTAAGTCCAATATCACTGGCCTTGAATTAGCATATTGGCACCCTTGTTATC
** * * *
742623 TTTAAGTCTGATGTCGCTGGCCTTGAATTAGCATATTAGCACCTCTAT-TT-T-
1 TTTAAGTCCAATATCACTGGCCTTGAATTAGCATATTGGCACC-CT-TGTTATC
** * * * * *
742674 TTTAAACCCAATGTCATTGGCCTTGAATCAGCACATTGGAACCCTTGTTATC
1 TTTAAGTCCAATATCACTGGCCTTGAATTAGCATATTGGCACCCTTGTTATC
* * * *
742726 TTTAAGTCCACTATCGCTGGCTTTGAATCAGCACT-TTGGCACCCTTGTTATC
1 TTTAAGTCCAATATCACTGGCCTTGAATTAGCA-TATTGGCACCCTTGTTATC
* * * *
742778 TTTAAGTCAAATATCATTGTCCTCGAATTAGCATATTGGCA
1 TTTAAGTCCAATATCACTGGCCTTGAATTAGCATATTGGCA
742819 TCTTTACCAT
Statistics
Matches: 153, Mismatches: 36, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
49 1 0.01
50 4 0.03
51 35 0.23
52 110 0.72
53 2 0.01
54 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (52 bp):
TTTAAGTCCAATATCACTGGCCTTGAATTAGCATATTGGCACCCTTGTTATC
Found at i:743634 original size:50 final size:51
Alignment explanation
Indices: 743566--743759 Score: 189
Period size: 52 Copynumber: 3.8 Consensus size: 51
743556 TTCTGAAAAG
* * * *
743566 AAATGTATTGATGCATTTTTTATTGTATTGATACATTCTAGGTTTGAT-CT
1 AAATGTATTGATACATTTTTCATTGTATCGATACATTCTAGGTTTGATCCC
* * * *
743616 AAATCTATTGATATATTTTTCATTGTATCGATACATTCTGGGTTTTTATCCC
1 AAATGTATTGATACATTTTTCATTGTATCGATACATTCTAGG-TTTGATCCC
* * * *
743668 AAAAGTATCGATACATTCTTCATTGTATCGATACATTCTAGGTTTTTGA-GCC
1 AAATGTATTGATACATTTTTCATTGTATCGATACATTCTAGG--TTTGATCCC
* * *
743720 AAATGTATCGATACATTCTTT-AATGTATCAATACA-TCTAG
1 AAATGTATTGATACATT-TTTCATTGTATCGATACATTCTAG
743760 TTAAATTTGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
50 36 0.30
51 10 0.08
52 67 0.56
53 7 0.06
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (51 bp):
AAATGTATTGATACATTTTTCATTGTATCGATACATTCTAGGTTTGATCCC
Found at i:750148 original size:33 final size:31
Alignment explanation
Indices: 750111--750173 Score: 99
Period size: 33 Copynumber: 2.0 Consensus size: 31
750101 TGAACAGTGA
*
750111 TGTATCGATACTATTTATGATGTATCGATACAC
1 TGTATCGATACAATTT-TG-TGTATCGATACAC
750144 TGTATCGATACAATTTTGTGTATCGATACA
1 TGTATCGATACAATTTTGTGTATCGATACA
750174 AATTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 12 0.41
32 2 0.07
33 15 0.52
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (31 bp):
TGTATCGATACAATTTTGTGTATCGATACAC
Found at i:750149 original size:13 final size:13
Alignment explanation
Indices: 750131--750155 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
750121 CTATTTATGA
750131 TGTATCGATACAC
1 TGTATCGATACAC
750144 TGTATCGATACA
1 TGTATCGATACA
750156 ATTTTGTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:750167 original size:18 final size:18
Alignment explanation
Indices: 750144--750179 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
750134 ATCGATACAC
*
750144 TGTATCGATACAATTTTG
1 TGTATCGATACAAATTTG
750162 TGTATCGATACAAATTTG
1 TGTATCGATACAAATTTG
750180 GCTACTGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.42
Consensus pattern (18 bp):
TGTATCGATACAAATTTG
Found at i:750225 original size:53 final size:53
Alignment explanation
Indices: 750143--750279 Score: 240
Period size: 53 Copynumber: 2.6 Consensus size: 53
750133 TATCGATACA
*
750143 CTGTATCGATACA-ATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGAC
1 CTGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGAC
*
750195 CTGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTC
1 CTGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGAC
750248 CTGTATCGATACATATTTGTGTGTATCGATAC
1 CTGTATCGATACATA-TTGTGTGTATCGATAC
750280 TATGCAATCT
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
52 13 0.16
53 52 0.64
54 16 0.20
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (53 bp):
CTGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGAC
Found at i:750390 original size:21 final size:21
Alignment explanation
Indices: 750360--750399 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
750350 TCAACCTTGT
750360 GTATTAATACCAATA-GTATAA
1 GTATTAATA-CAATACGTATAA
*
750381 GTATTGATACAATACGTAT
1 GTATTAATACAATACGTAT
750400 TTTTACTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.35
Consensus pattern (21 bp):
GTATTAATACAATACGTATAA
Found at i:753645 original size:84 final size:84
Alignment explanation
Indices: 753555--753719 Score: 208
Period size: 84 Copynumber: 2.0 Consensus size: 84
753545 CATTTTCCAC
* * * * * *
753555 TTGCAACTCATTTC-TTTTCTCCTCTAATTCATTTATTTTCTTTTTAA-AATAATTATTTTCTAA
1 TTGCAACTC-TTTCATATTCTCCTCTAATTCACTTAATTTCTTTTCAAGAAT-ATCATTCTCTAA
753618 ACTCATTGATTTACTTTCATT
64 ACTCATTGATTTACTTTCATT
* *
753639 TTGCAACTCTTTCATATTCTTCTCTAATTCACTTAATTTCTTTTCAAGAATATCATTCTCTACAC
1 TTGCAACTCTTTCATATTCTCCTCTAATTCACTTAATTTCTTTTCAAGAATATCATTCTCTAAAC
* *
753704 TTATTGATTTATTTTC
66 TCATTGATTTACTTTC
753720 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 4 0.06
84 62 0.90
85 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.03, T:0.53
Consensus pattern (84 bp):
TTGCAACTCTTTCATATTCTCCTCTAATTCACTTAATTTCTTTTCAAGAATATCATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:754132 original size:21 final size:21
Alignment explanation
Indices: 754108--754149 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
754098 ATCCATTTCT
* *
754108 TCATTTTCATCAACCTCTTGA
1 TCATCTTCATCAACATCTTGA
*
754129 TCATCTTCATCATCATCTTGA
1 TCATCTTCATCAACATCTTGA
754150 ACGGTTGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (21 bp):
TCATCTTCATCAACATCTTGA
Found at i:755819 original size:18 final size:18
Alignment explanation
Indices: 755796--755830 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
755786 TCGATACACA
*
755796 GTATCGATACAATTTTGT
1 GTATCGATACAAATTTGT
755814 GTATCGATACAAATTTG
1 GTATCGATACAAATTTG
755831 GCTACTGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (18 bp):
GTATCGATACAAATTTGT
Found at i:755820 original size:31 final size:33
Alignment explanation
Indices: 755763--755824 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
755753 GAACAGTGAT
*
755763 GTATCGATACTATTTATGATGTATCGATACACA
1 GTATCGATACAATTTATGATGTATCGATACACA
755796 GTATCGATACAATTT-TG-TGTATCGATACA
1 GTATCGATACAATTTATGATGTATCGATACA
755825 AATTTGGCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 12 0.43
32 2 0.07
33 14 0.50
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (33 bp):
GTATCGATACAATTTATGATGTATCGATACACA
Found at i:755875 original size:53 final size:53
Alignment explanation
Indices: 755796--755930 Score: 236
Period size: 53 Copynumber: 2.5 Consensus size: 53
755786 TCGATACACA
*
755796 GTATCGATACA-ATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACCT
1 GTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGACCT
*
755848 GTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCCT
1 GTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGACCT
755901 GTATCGATACATATTTGTGTGTATCGATAC
1 GTATCGATACATA-TTGTGTGTATCGATAC
755931 TATGCAATCT
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
52 11 0.14
53 52 0.66
54 16 0.20
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (53 bp):
GTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGACCT
Found at i:755963 original size:20 final size:20
Alignment explanation
Indices: 755900--755970 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
755890 GCCAATGTCC
**
755900 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
755920 TGTATCGATAC-TATGCAATC
1 TGTATCGATACATAT-TAATG
755940 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
*
755960 TGTATCAATAC
1 TGTATCGATAC
755971 TTTTCAGGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 3 0.07
20 37 0.90
21 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:756036 original size:21 final size:21
Alignment explanation
Indices: 756010--756050 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
756000 GTCAACCTTG
756010 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
756031 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
756051 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:759218 original size:166 final size:165
Alignment explanation
Indices: 758955--759466 Score: 617
Period size: 166 Copynumber: 3.1 Consensus size: 165
758945 TTTTTTTAGG
* *
758955 AATTTCTTCTATTTTCAAATTACGGGG-TTTCTTCTTCGTAAATGTTTTCGAGAGGATTTTTCTT
1 AATTTCTCCTATTTTCAAATTACGGGGTTTTCTTCTTCATAAATGTTTTC-AGAGGATTTTTCTT
* * *
759019 AGTTTTTATTTTTTAAAA-TTATCAATTATTATTATTTAATCCATATTAAATCAGTTTTTAAAAA
65 ATTTTTTA-TTTTTAAAATTTATCAAATATTATTATTTAATTCATATTAAATCAGTTTTTAAAAA
* *
759083 TTCATTC-ATTTTCTCAAGTTTTTGAATTTTTTCTTAA
129 TTCATTCAATTTTCT-GAGTTTTTGAATTTTTTCTTGA
* * *
759120 AATTTCTCCTGTTTTCAAATTATGGGGTTTTCTTC-TCCTAAATGTTTTCAAGAGGATTTTTCTT
1 AATTTCTCCTATTTTCAAATTACGGGGTTTTCTTCTTCATAAATGTTTTC-AGAGGATTTTTCTT
759184 ATTTTTTTATTTTTAAAATTTATCAAATATTATTATTTAATTCATATTAAATCAGTTTTTAAAAA
65 A-TTTTTTATTTTTAAAATTTATCAAATATTATTATTTAATTCATATTAAATCAGTTTTTAAAAA
*
759249 TTCATTCAATTTTTTGAGTTTTTGAATTTTTTCCTTGA
129 TTCATTCAATTTTCTGAGTTTTTGAATTTTTT-CTTGA
** * ** * * * *
759287 AA-TTCTATTGTTACCAAAATACGAGGTTTTCTACTTCATAAATATTTTCAGAGAGATTTTTCTT
1 AATTTCTCCTATTTTCAAATTACGGGGTTTTCTTCTTCATAAATGTTTTCAGAG-GATTTTTCTT
* * * * * * *
759351 GGTTTGTAATTTTTAAAATTTATCAAATATTATTATTTCATTTATATTAAATCAGCTTTAAAAAA
65 -ATTTTTTATTTTTAAAATTTATCAAATATTATTATTTAATTCATATTAAATCAGTTTTTAAAAA
* *
759416 TT-AATCTATTTTCATGAG-TTTTGAATTTTTTCTCTGA
129 TTCATTCAATTTTC-TGAGTTTTTGAATTTTTTCT-TGA
759453 AATTTC-CCTATTTT
1 AATTTCTCCTATTTT
759467 TGACTGAGCT
Statistics
Matches: 300, Mismatches: 36, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
165 63 0.21
166 137 0.46
167 100 0.33
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (165 bp):
AATTTCTCCTATTTTCAAATTACGGGGTTTTCTTCTTCATAAATGTTTTCAGAGGATTTTTCTTA
TTTTTTATTTTTAAAATTTATCAAATATTATTATTTAATTCATATTAAATCAGTTTTTAAAAATT
CATTCAATTTTCTGAGTTTTTGAATTTTTTCTTGA
Found at i:759927 original size:15 final size:13
Alignment explanation
Indices: 759906--759939 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
759896 TTTTCAACTG
*
759906 AAAAAAAGAGAGA
1 AAAAAAAAAGAGA
*
759919 AAGAAAAAAGAGA
1 AAAAAAAAAGAGA
759932 AAAAAAAA
1 AAAAAAAA
759940 GAAAAAAGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAGA
Found at i:759930 original size:13 final size:12
Alignment explanation
Indices: 759905--759946 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
759895 GTTTTCAACT
*
759905 GAAAAAAAGAGA
1 GAAAAAAAAAGA
759917 GAAAGAAAAAAGA
1 GAAA-AAAAAAGA
759930 GAAAAAAAAAGA
1 GAAAAAAAAAGA
759942 -AAAAA
1 GAAAAA
759947 GAGAGAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 5 0.18
12 12 0.43
13 11 0.39
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
GAAAAAAAAAGA
Found at i:759937 original size:10 final size:10
Alignment explanation
Indices: 759922--759956 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
759912 AGAGAGAAAG
759922 AAAAAAGAGA
1 AAAAAAGAGA
*
759932 AAAAAAAAGA
1 AAAAAAGAGA
759942 AAAAAGAGAGA
1 AAAAA-AGAGA
759953 AAAA
1 AAAA
759957 TTAGAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAAAGAGA
Found at i:759942 original size:19 final size:20
Alignment explanation
Indices: 759918--759956 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
759908 AAAAAGAGAG
759918 AAAGAAAAAAGAGA-AAAAA
1 AAAGAAAAAAGAGAGAAAAA
759937 AAAGAAAAAAGAGAGAAAAA
1 AAAGAAAAAAGAGAGAAAAA
759957 TTAGAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAAGAGAGAAAAA
Found at i:767737 original size:50 final size:50
Alignment explanation
Indices: 767673--767828 Score: 285
Period size: 50 Copynumber: 3.1 Consensus size: 50
767663 ACATAAACTA
* *
767673 AAAAAGAAGTCAATAATATCAGAAACCTCAGCTATAAAGTAAACATCATC
1 AAAAGGAAGTCAATAATATCAGAAACCTCAACTATAAAGTAAACATCATC
767723 AAAAGGAAGTCAATAATATCAGAAACCTCAACTATAAAGTAAACATCATC
1 AAAAGGAAGTCAATAATATCAGAAACCTCAACTATAAAGTAAACATCATC
*
767773 CAAAGGAAGTCAATAATATCAGAAACCTCAACTATAAAGTAAACATCATC
1 AAAAGGAAGTCAATAATATCAGAAACCTCAACTATAAAGTAAACATCATC
767823 AAAAGG
1 AAAAGG
767829 TATTTAAATG
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 102 1.00
ACGTcount: A:0.52, C:0.18, G:0.11, T:0.19
Consensus pattern (50 bp):
AAAAGGAAGTCAATAATATCAGAAACCTCAACTATAAAGTAAACATCATC
Found at i:768171 original size:23 final size:25
Alignment explanation
Indices: 768127--768194 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
768117 ACCCATTTTC
768127 CCTTTTTTTTTCTTCTTCTTTCATT
1 CCTTTTTTTTTCTTCTTCTTTCATT
* *
768152 CTTTTTTTTTTCTT-TT-TTTCTTT
1 CCTTTTTTTTTCTTCTTCTTTCATT
768175 CCTTTTTCTTATT-TTCTTCT
1 CCTTTTT-TT-TTCTTCTTCT
768195 CCCTTCGTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
23 12 0.33
24 6 0.17
25 17 0.47
26 1 0.03
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (25 bp):
CCTTTTTTTTTCTTCTTCTTTCATT
Found at i:768172 original size:19 final size:19
Alignment explanation
Indices: 768130--768192 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 19
768120 CATTTTCCCT
768130 TTTTTTTTCTTCTTCTTTCATTC
1 TTTTTTTT-TTCTT-TTT--TTC
768153 TTTTTTTTTTCTTTTTTTC
1 TTTTTTTTTTCTTTTTTTC
** *
768172 TTTCCTTTTTCTTATTTTC
1 TTTTTTTTTTCTTTTTTTC
768191 TT
1 TT
768193 CTCCCTTCGT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 21 0.57
21 3 0.08
22 5 0.14
23 8 0.22
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTTTTTCTTTTTTTC
Found at i:768172 original size:27 final size:26
Alignment explanation
Indices: 768129--768192 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
768119 CCATTTTCCC
768129 TTTTTTTTTC--TTCTTCTTTCATTCT
1 TTTTTTTTTCTTTTCTTCTTTCATT-T
* *
768154 TTTTTTTTTCTTTTTTTCTTTCCTTT
1 TTTTTTTTTCTTTTCTTCTTTCATTT
*
768180 TTCTTATTTTCTT
1 TT-TTTTTTTCTT
768193 CTCCCTTCGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 10 0.30
26 3 0.09
27 20 0.61
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (26 bp):
TTTTTTTTTCTTTTCTTCTTTCATTT
Found at i:768342 original size:4 final size:4
Alignment explanation
Indices: 768308--768398 Score: 59
Period size: 4 Copynumber: 23.8 Consensus size: 4
768298 ATTTATTTTT
* * *
768308 TTTC TTT- TTTC TCTTA TTTC TTATT TTTC TTTC TTTC TTTC TTT- TTCC
1 TTTC TTTC TTTC T-TTC TTTC TT-TC TTTC TTTC TTTC TTTC TTTC TTTC
* * * *
768356 TTCC TTTC -TTC TCTG TTTC TTTC -TT- TTTC TTT- TTTC CTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
768399 TCTAGATCAA
Statistics
Matches: 67, Mismatches: 12, Indels: 16
0.71 0.13 0.17
Matches are distributed among these distances:
3 15 0.22
4 46 0.69
5 6 0.09
ACGTcount: A:0.02, C:0.23, G:0.01, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:768401 original size:37 final size:35
Alignment explanation
Indices: 768306--768401 Score: 106
Period size: 37 Copynumber: 2.7 Consensus size: 35
768296 GAATTTATTT
768306 TTTTTCTTTTTTCTCTT-ATTTCTTATTTTTCTTTC
1 TTTTTCTTTTTTC-CTTCATTTCTTATTTTTCTTTC
* *
768341 TTTCTT-TCTTTTTCCTTCCTTTCTTCTCTGTTTCTTTC
1 TTT-TTCT-TTTTTCCTTCATTTCTTAT-T-TTTCTTTC
*
768379 TTTTTCTTTTTTCCTTCTTTTCT
1 TTTTTCTTTTTTCCTTCATTTCT
768402 AGATCAAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
35 7 0.13
36 15 0.29
37 18 0.35
38 12 0.23
ACGTcount: A:0.02, C:0.23, G:0.01, T:0.74
Consensus pattern (35 bp):
TTTTTCTTTTTTCCTTCATTTCTTATTTTTCTTTC
Found at i:768504 original size:2 final size:2
Alignment explanation
Indices: 768497--768522 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
768487 GCGATTGAAG
768497 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
768523 GGGGGCGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:773354 original size:26 final size:25
Alignment explanation
Indices: 773325--773411 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 25
773315 TCTTAAAAAA
773325 TAATTTTATCAATGAAAAAATTTAAG
1 TAATTTTATCAAT-AAAAAATTTAAG
*
773351 TAATTTT-TCTAA-AAAAAATCTTAAAAAA
1 TAATTTTATC-AATAAAAAAT-TT---AAG
*
773379 TAATTTTATCAATAAAAAAATTAAAG
1 TAATTTTATCAAT-AAAAAATTTAAG
773405 TAATTTT
1 TAATTTT
773412 TTAAAAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 16
0.72 0.04 0.23
Matches are distributed among these distances:
24 7 0.14
25 4 0.08
26 18 0.36
28 11 0.22
29 3 0.06
30 7 0.14
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (25 bp):
TAATTTTATCAATAAAAAATTTAAG
Found at i:773374 original size:54 final size:54
Alignment explanation
Indices: 773315--773426 Score: 190
Period size: 54 Copynumber: 2.1 Consensus size: 54
773305 TTATTTTGTT
* *
773315 TCTTAAAAAATAATTTTATCAATGAAAAAATTTAAGTAATTTTTCTAAAAAAA-A
1 TCTTAAAAAATAATTTTATCAATAAAAAAATTAAAGTAATTTTT-TAAAAAAATA
773369 TCTTAAAAAATAATTTTATCAATAAAAAAATTAAAGTAATTTTTTAAAAAAATA
1 TCTTAAAAAATAATTTTATCAATAAAAAAATTAAAGTAATTTTTTAAAAAAATA
773423 TCTT
1 TCTT
773427 TCTTTTATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
53 8 0.15
54 47 0.85
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (54 bp):
TCTTAAAAAATAATTTTATCAATAAAAAAATTAAAGTAATTTTTTAAAAAAATA
Found at i:773402 original size:28 final size:28
Alignment explanation
Indices: 773317--773403 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
773307 ATTTTGTTTC
*
773317 TTAAAAAATAATTTTATCAATGAAAAAA
1 TTAAAAAATAATTTTATCAATAAAAAAA
* * *
773345 TT--TAAGTAATTTT-TCTAA-AAAAAATC
1 TTAAAAAATAATTTTATC-AATAAAAAA-A
773371 TTAAAAAATAATTTTATCAATAAAAAAA
1 TTAAAAAATAATTTTATCAATAAAAAAA
773399 TTAAA
1 TTAAA
773404 GTAATTTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
25 7 0.15
26 13 0.28
28 18 0.39
29 8 0.17
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (28 bp):
TTAAAAAATAATTTTATCAATAAAAAAA
Found at i:773413 original size:28 final size:28
Alignment explanation
Indices: 773328--773414 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
773318 TAAAAAATAA
* *
773328 TTTTATCAATGAAAAAATTTAAGTAATT
1 TTTTATCAATAAAAAAATTAAAGTAATT
** * *
773356 TTTCTA--AA-AAAAATCTTAAA-AAATAA
1 TTT-TATCAATAAAAAAATTAAAGTAAT-T
773382 TTTTATCAATAAAAAAATTAAAGTAATT
1 TTTTATCAATAAAAAAATTAAAGTAATT
773410 TTTTA
1 TTTTA
773415 AAAAAATATC
Statistics
Matches: 43, Mismatches: 10, Indels: 12
0.66 0.15 0.18
Matches are distributed among these distances:
25 5 0.12
26 11 0.26
27 4 0.09
28 18 0.42
29 5 0.12
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (28 bp):
TTTTATCAATAAAAAAATTAAAGTAATT
Found at i:773709 original size:20 final size:21
Alignment explanation
Indices: 773686--773730 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
773676 TTATTTCCTT
*
773686 AAAAAATCAATT-TTTTCAAA
1 AAAAAATAAATTATTTTCAAA
*
773706 AAAATATAAATTCATTTTCAAA
1 AAAAAATAAATT-ATTTTCAAA
773728 AAA
1 AAA
773731 TCATTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
22 11 0.52
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAAATAAATTATTTTCAAA
Found at i:773729 original size:39 final size:39
Alignment explanation
Indices: 773662--773740 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 39
773652 TCTAAACAAT
* * *
773662 AAAAAAATATGAATTTATTTCCTTAAAAAATCAATTTTTTC
1 AAAAAAATATAAATTCATTT-CTCAAAAAATC-ATTTTTTC
773703 AAAAAAATATAAATTCATTT-TCAAAAAATCATTTTTTC
1 AAAAAAATATAAATTCATTTCTCAAAAAATCATTTTTTC
773741 TCAACGCAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
38 8 0.23
39 9 0.26
41 18 0.51
ACGTcount: A:0.48, C:0.10, G:0.01, T:0.41
Consensus pattern (39 bp):
AAAAAAATATAAATTCATTTCTCAAAAAATCATTTTTTC
Found at i:775984 original size:13 final size:13
Alignment explanation
Indices: 775966--775994 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
775956 TTGAACCAAA
775966 ATGGCCTTCCATC
1 ATGGCCTTCCATC
775979 ATGGCCTTCCATC
1 ATGGCCTTCCATC
775992 ATG
1 ATG
775995 CTTAAAACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGGCCTTCCATC
Found at i:782055 original size:20 final size:20
Alignment explanation
Indices: 782014--782056 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
782004 GTTCTTTTCC
* *
782014 AAACACAAAAAAAAAGAGAA
1 AAACAAAAAAAAAAACAGAA
782034 AAACAAAAAAACAAAACA-AA
1 AAACAAAAAAA-AAAACAGAA
782054 AAA
1 AAA
782057 TCTCGGTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.84, C:0.12, G:0.05, T:0.00
Consensus pattern (20 bp):
AAACAAAAAAAAAAACAGAA
Found at i:783100 original size:31 final size:31
Alignment explanation
Indices: 783050--783262 Score: 188
Period size: 31 Copynumber: 6.8 Consensus size: 31
783040 TTTATTTCTC
* *
783050 TTCTCAAAGACCACGACTCAGTGGCAT-TTT
1 TTCTCAAAGTCCACAACTCAGTGGCATCTTT
*
783080 TTCTCCAAAGTCCACAACTCAGTGGCAATCTCT
1 TTCT-CAAAGTCCACAACTCAGTGGC-ATCTTT
783113 TT-TCAAAGTCCACAACTCAGTGGCATC-TT
1 TTCTCAAAGTCCACAACTCAGTGGCATCTTT
* * *
783142 TTCTTCAAAGCCCACAACTCTGTGGCATC-CT
1 TTC-TCAAAGTCCACAACTCAGTGGCATCTTT
* *
783173 TT-TC--AGTCCACAATTCTGTGGCATCTTT
1 TTCTCAAAGTCCACAACTCAGTGGCATCTTT
* *
783201 TTCCTGCAAAGCCCACAACTCCGTGGCACTCTTT
1 TT-CT-CAAAGTCCACAACTCAGTGGCA-TCTTT
** *
783235 TTCCTTTTAAGTCCACAACTCCGTGGCA
1 TT-C-TCAAAGTCCACAACTCAGTGGCA
783263 CCCTTTTAAG
Statistics
Matches: 154, Mismatches: 16, Indels: 22
0.80 0.08 0.11
Matches are distributed among these distances:
27 19 0.12
28 3 0.02
29 5 0.03
30 8 0.05
31 67 0.44
32 3 0.02
33 20 0.13
34 28 0.18
35 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.31
Consensus pattern (31 bp):
TTCTCAAAGTCCACAACTCAGTGGCATCTTT
Found at i:783144 original size:62 final size:62
Alignment explanation
Indices: 783046--783237 Score: 223
Period size: 62 Copynumber: 3.1 Consensus size: 62
783036 ATTCTTTATT
* * * * *
783046 TCTCTTCTCAAAGACCACGACTCAGTGGCATTTTTTCTCCAAAGTCCACAACTCAGTGGCAA
1 TCTCTTTTCAAAGTCCACAACTCAGTGGCATCTTTTCTCCAAAGCCCACAACTCAGTGGCAA
* *
783108 TCTCTTTTCAAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCTGTGGC-A
1 TCTCTTTTCAAAGTCCACAACTCAGTGGCATCTTTTCTCCAAAGCCCACAACTCAGTGGCAA
* * * * *
783169 TC-CTTTTC--AGTCCACAATTCTGTGGCATCTTTTTCCTGCAAAGCCCACAACTCCGTGGCAC
1 TCTCTTTTCAAAGTCCACAACTCAGTGGCATC-TTTT-CTCCAAAGCCCACAACTCAGTGGCAA
783230 TCT-TTTTC
1 TCTCTTTTC
783238 CTTTTAAGTC
Statistics
Matches: 114, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
58 19 0.17
59 4 0.04
60 28 0.25
61 10 0.09
62 53 0.46
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.32
Consensus pattern (62 bp):
TCTCTTTTCAAAGTCCACAACTCAGTGGCATCTTTTCTCCAAAGCCCACAACTCAGTGGCAA
Found at i:783239 original size:34 final size:34
Alignment explanation
Indices: 783180--783269 Score: 110
Period size: 34 Copynumber: 2.7 Consensus size: 34
783170 CCTTTTCAGT
* *
783180 CCACAATTCTGTGGCA-TCTTTTTCCTGCAAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTGCAAAGC
*** *
783213 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTGCAAAGC
*
783247 CCACAACTCCGTGGCACCCTTTT
1 CCACAACTCCGTGGCACTCTTTT
783270 AAGTCCATGA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 14 0.29
34 35 0.71
ACGTcount: A:0.19, C:0.34, G:0.13, T:0.33
Consensus pattern (34 bp):
CCACAACTCCGTGGCACTCTTTTTCCTGCAAAGC
Found at i:783267 original size:27 final size:27
Alignment explanation
Indices: 783237--783296 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
783227 CACTCTTTTT
*
783237 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTACGTGGCAC
**
783264 CCTTTTAAGTCCATGACTACGTGGCAC
1 CCTTTTAAGTCCACAACTACGTGGCAC
*
783291 CTTTTT
1 CCTTTT
783297 CTTTCTAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.33
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTACGTGGCAC
Found at i:783288 original size:94 final size:91
Alignment explanation
Indices: 783116--783312 Score: 216
Period size: 94 Copynumber: 2.1 Consensus size: 91
783106 AATCTCTTTT
* * * *
783116 CAAAGTCCACAACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCTGTGGCATCCTTTTCAGTC
1 CAAAGCCCACAACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTC
* *
783181 CACAATTCTGTGGCATCTTTTTCCTG
66 CACAATACTGTGGCACCTTTTTCCTG
* ** *
783207 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAA
1 CAAAGCCCACAACTCAGTGGCA-TC-TTTT-CTTCAAAGCCCACAACTCCGTGGCACCCTTTTAA
* * * *
783272 GTCCATGACTAC-GTGGCACCTTTTTCTTT
63 GTCCA-CAATACTGTGGCACCTTTTTCCTG
783301 CTAAAGCCCACA
1 C-AAAGCCCACA
783313 CAAGTCGGTG
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
91 20 0.23
92 2 0.02
93 4 0.05
94 48 0.55
95 13 0.15
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.31
Consensus pattern (91 bp):
CAAAGCCCACAACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTC
CACAATACTGTGGCACCTTTTTCCTG
Found at i:783338 original size:33 final size:33
Alignment explanation
Indices: 783300--783391 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
783290 CCTTTTTCTT
*
783300 TCTAAAGCCCACACAAGTCGGTGGCAACCATTC
1 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
783333 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
1 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
*
783366 TCAAAAGCCCACACAAGTTGGTGGCA
1 TCTAAAGCCCACACAAGTTGGTGGCA
783392 CCTTTAAGTC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (33 bp):
TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
Found at i:783417 original size:22 final size:22
Alignment explanation
Indices: 783392--783460 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
783382 GTTGGTGGCA
783392 CCTTTAAGTCCAATATAGCTGG
1 CCTTTAAGTCCAATATAGCTGG
* * *
783414 CCTTGAA-TCAGCACAT-TGGC--A
1 CCTTTAAGTC--CA-ATATAGCTGG
783435 CCTTTAAGTCCAATATAGCTGG
1 CCTTTAAGTCCAATATAGCTGG
783457 CCTT
1 CCTT
783461 GAATCAGCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 12 0.35
23 5 0.15
24 2 0.06
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (22 bp):
CCTTTAAGTCCAATATAGCTGG
Found at i:783457 original size:24 final size:24
Alignment explanation
Indices: 783387--783457 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 24
783377 CACAAGTTGG
783387 TGGCACCTTTAAGTCCAATATAGC
1 TGGCACCTTTAAGTCCAATATAGC
* ** * *
783411 TGG--CCTTGAA-T-CAGCACA-T
1 TGGCACCTTTAAGTCCAATATAGC
783430 TGGCACCTTTAAGTCCAATATAGC
1 TGGCACCTTTAAGTCCAATATAGC
783454 TGGC
1 TGGC
783458 CTTGAATCAG
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.22
22 7 0.22
23 4 0.12
24 7 0.22
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (24 bp):
TGGCACCTTTAAGTCCAATATAGC
Done.