genome.fa.s1268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1268
Parameters: 2 7 7 80 10 50 1000
Length:  34924

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3164--3217	19	2.7	19	88	5	72	33	16	14	35	1.90
15746--16052	79	3.9	78	75	7	255	31	14	27	27	1.94
15988--16103	51	2.3	51	90	0	178	31	12	25	31	1.92
16042--16319	109	2.6	107	80	2	340	33	16	23	26	1.95
16195--16264	28	2.5	28	80	0	77	25	18	31	24	1.98
16272--16398	51	2.5	51	75	7	150	39	10	21	29	1.86
18777--18806	13	2.3	13	100	0	60	40	13	16	30	1.87
18789--18904	20	5.8	20	86	8	164	44	17	14	23	1.85
18788--18923	40	3.4	40	90	5	179	45	16	13	23	1.84
18789--18904	60	1.9	60	91	3	189	44	17	14	23	1.85
18788--18923	20	6.8	19	82	11	141	45	16	13	23	1.84
18788--18923	60	2.3	59	86	8	186	45	16	13	23	1.84
18939--18966	13	2.2	13	100	0	56	42	14	14	28	1.84
19557--19643	41	2.1	43	86	4	124	45	10	24	19	1.81
19659--19896	42	5.6	43	73	13	199	43	10	26	19	1.83
19697--19925	38	5.6	38	70	18	138	41	12	26	20	1.88
19665--19912	83	3.0	82	85	5	311	41	12	25	20	1.86
19888--20253	61	6.1	60	82	6	388	29	19	25	24	1.99
20078--20275	55	3.5	55	82	10	238	27	20	24	27	1.99
20152--20435	156	1.8	156	87	1	426	28	18	27	25	1.98
20381--20519	55	2.5	55	94	0	242	23	20	28	28	1.99
20319--20549	116	2.0	111	82	13	270	25	19	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21535--21591	10	5.8	9	82	17	69	0	1	14	84	0.71
21541--21588	5	9.6	5	86	8	71	0	0	16	83	0.65
21535--21588	20	2.7	19	91	8	81	0	1	14	83	0.73
29295--29350	25	2.2	25	93	0	94	46	7	25	21	1.76
30972--31271	79	3.8	78	78	5	302	32	13	27	27	1.94
31215--31312	51	1.9	51	87	0	142	35	8	22	33	1.84
33809--33877	33	2.1	33	91	0	111	42	13	15	28	1.85
33759--33944	102	1.8	102	83	2	248	41	12	15	30	1.85
33755--33943	49	3.8	48	72	13	141	40	13	15	30	1.86
34526--34628	41	2.5	41	84	7	138	45	9	26	18	1.80
34641--34783	42	3.3	43	83	7	175	39	11	28	20	1.87

Tables:   1

The End!