Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1269
Parameters: 2 7 7 80 10 50 1000
Length:  29880

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
622--647
13
2.0
13
100
0
52
30
15
15
38
1.88
686--761
21
3.7
21
80
3
100
28
17
11
42
1.84
707--779
20
3.6
20
81
3
101
31
19
13
35
1.91
686--779
41
2.3
41
98
0
179
29
18
12
39
1.88
1398--1433
16
2.2
16
95
0
63
36
33
0
30
1.58
3251--3288
13
2.9
13
96
0
67
31
15
18
34
1.92
3277--3353
20
3.6
20
69
20
66
44
16
12
25
1.84
5367--5397
15
2.1
15
93
0
53
12
22
16
48
1.80
9546--9618
20
3.6
20
81
3
101
31
19
13
35
1.91
9524--9618
41
2.3
42
96
1
174
29
17
12
40
1.87
10402--10428
1
27.0
1
100
0
54
0
0
0
100
0.00
10470--10506
17
2.2
17
90
0
56
0
8
5
86
0.70
17678--17798
52
2.3
52
97
0
224
28
18
18
34
1.94
17678--17818
52
2.7
51
90
4
212
30
17
18
33
1.94
17807--17831
13
1.9
13
100
0
50
36
16
16
32
1.90
17900--17924
13
1.9
13
100
0
50
32
16
16
36
1.90
18871--19578
49
14.6
49
83
4
927
31
17
25
25
1.97
18871--19583
98
7.4
98
94
2
1099
31
17
26
25
1.97
19578--19852
67
4.1
68
92
2
461
18
17
34
29
1.94
19578--19852
34
8.2
34
92
2
452
18
17
34
29
1.94
19854--20324
34
13.8
34
84
5
533
34
12
32
21
1.90
19859--20319
206
2.2
206
97
0
868
34
12
32
20
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21306--21331
1
26.0
1
100
0
52
0
0
0
100
0.00
21373--21409
17
2.2
17
90
0
56
0
8
5
86
0.70
22374--22546
55
3.1
55
90
0
265
28
30
19
21
1.97
22644--22735
42
2.2
43
80
9
100
17
28
11
42
1.85
23300--23397
21
4.7
21
97
0
187
33
10
19
36
1.85
23448--23472
13
1.9
13
100
0
50
36
16
16
32
1.90
23534--23559
13
2.0
13
100
0
52
30
15
15
38
1.88
23514--23580
33
2.0
33
88
0
98
25
14
16
43
1.86
24171--24199
11
2.7
11
94
5
51
51
34
0
13
1.42
26040--26115
27
2.8
27
88
6
100
25
32
19
22
1.97
25936--26319
51
7.4
52
73
12
245
30
25
11
32
1.92
26099--26319
104
2.1
102
83
4
264
29
25
11
33
1.91
26302--26378
28
2.8
28
86
4
93
23
35
19
22
1.96
28119--28174
21
2.6
21
83
8
69
37
5
14
42
1.68
28293--28346
20
2.8
19
89
10
83
33
16
16
33
1.92
28394--28418
13
1.9
13
100
0
50
36
16
16
32
1.90
28374--28438
33
2.0
33
84
6
87
35
12
15
36
1.85

Tables:   1

The End!