Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold127
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4281254
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
File 24 of 26
Found at i:3746920 original size:3 final size:3
Alignment explanation
Indices: 3746912--3746938 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
3746902 CCAACATGAA
3746912 CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT
3746939 GAAATTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:3746983 original size:31 final size:32
Alignment explanation
Indices: 3746921--3746983 Score: 83
Period size: 34 Copynumber: 1.9 Consensus size: 32
3746911 ACATCATCAT
* *
3746921 CATCATCATCATCATCATGAAATTTGTATATAAA
1 CATCATCATCATCATCATG--ATATGCATATAAA
3746955 CATCATCATCATCATCATG-TATGCATATA
1 CATCATCATCATCATCATGATATGCATATA
3746984 TAAAAATCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 8 0.30
34 19 0.70
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (32 bp):
CATCATCATCATCATCATGATATGCATATAAA
Found at i:3748924 original size:23 final size:22
Alignment explanation
Indices: 3748898--3748946 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
3748888 TTTTTTAATT
*
3748898 TATTCTACAATTTTTTATTAAAA
1 TATTCTA-AATTGTTTATTAAAA
* *
3748921 TATTTTTAAATTGTTTATTCAAA
1 TA-TTCTAAATTGTTTATTAAAA
3748944 TAT
1 TAT
3748947 AACAAATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
22 1 0.05
23 17 0.77
24 4 0.18
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTCTAAATTGTTTATTAAAA
Found at i:3749038 original size:16 final size:17
Alignment explanation
Indices: 3749008--3749058 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
3748998 ATATATACAA
3749008 TAATATATTAATATT-T
1 TAATATATTAATATTAT
3749024 TAA-ATATTAAATATTAT
1 TAATATATT-AATATTAT
* *
3749041 TAATATATAAAAATTAT
1 TAATATATTAATATTAT
3749058 T
1 T
3749059 TATCAATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 5 0.17
16 9 0.30
17 12 0.40
18 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATATATTAATATTAT
Found at i:3749590 original size:36 final size:35
Alignment explanation
Indices: 3749516--3749591 Score: 82
Period size: 36 Copynumber: 2.1 Consensus size: 35
3749506 TTTTATTAAC
* * * *
3749516 ATTTAAAATTTTAATAAATATTATTTTATATATTT
1 ATTTAAAATTTTAATAAATATAATTTTACAAATAT
*
3749551 ATTTAAACATTTTAATTAAT-TAATTTGTACAAATAT
1 ATTTAAA-ATTTTAATAAATATAATTT-TACAAATAT
3749587 ATTTA
1 ATTTA
3749592 TAAAGTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
35 12 0.35
36 22 0.65
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (35 bp):
ATTTAAAATTTTAATAAATATAATTTTACAAATAT
Found at i:3750290 original size:18 final size:16
Alignment explanation
Indices: 3750267--3750300 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
3750257 AAAAAATTGA
3750267 TGTATTTATATTTTTATT
1 TGTA-TTAT-TTTTTATT
3750285 TGTATTATTTTTTATT
1 TGTATTATTTTTTATT
3750301 ATTTAAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (16 bp):
TGTATTATTTTTTATT
Found at i:3750581 original size:25 final size:26
Alignment explanation
Indices: 3750532--3750581 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
3750522 TTATGTTATG
* *
3750532 TTTTAATTATTTTTATTTATCTTGTA
1 TTTTAATTATTTTTATATATATTGTA
3750558 TTTTAA-TATTTTTATATATATTGT
1 TTTTAATTATTTTTATATATATTGT
3750582 GTACGTAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (26 bp):
TTTTAATTATTTTTATATATATTGTA
Found at i:3751583 original size:20 final size:20
Alignment explanation
Indices: 3751532--3751568 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3751522 TTAAAAATAG
3751532 TAAAA-AAAATTTTAATTAA
1 TAAAACAAAATTTTAATTAA
*
3751551 TAAAACAATATTTTAATT
1 TAAAACAAAATTTTAATT
3751569 TTAAATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAACAAAATTTTAATTAA
Found at i:3757366 original size:2 final size:2
Alignment explanation
Indices: 3757359--3757398 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
3757349 CTGATCAACT
3757359 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3757399 AATCTATAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3757676 original size:9 final size:9
Alignment explanation
Indices: 3757662--3757693 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
3757652 ATTTAAGTTT
3757662 TAATTTTTA
1 TAATTTTTA
3757671 TAATTTTTA
1 TAATTTTTA
3757680 TAA--TTTA
1 TAATTTTTA
3757687 TAATTTT
1 TAATTTT
3757694 ATTTATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TAATTTTTA
Found at i:3759298 original size:21 final size:22
Alignment explanation
Indices: 3759272--3759315 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
3759262 ATTATGATCG
3759272 ATAATA-TTTATATT-TTTTTAT
1 ATAATATTTTA-ATTATTTTTAT
3759293 ATAATATTTTAATTATTTTTAT
1 ATAATATTTTAATTATTTTTAT
3759315 A
1 A
3759316 GTTATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
ATAATATTTTAATTATTTTTAT
Found at i:3759311 original size:22 final size:21
Alignment explanation
Indices: 3759272--3759315 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 21
3759262 ATTATGATCG
3759272 ATAATATTTATATTTTTTTAT
1 ATAATATTTATATTTTTTTAT
3759293 ATAATATTT-TAATTATTTTTAT
1 ATAATATTTAT-ATT-TTTTTAT
3759315 A
1 A
3759316 GTTATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 12 0.57
22 8 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
ATAATATTTATATTTTTTTAT
Found at i:3760709 original size:18 final size:17
Alignment explanation
Indices: 3760671--3760709 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
3760661 TCATATTTTA
**
3760671 ATTATTTTTTATATTGT
1 ATTATTTTTTATATTAC
3760688 ATTATTTTTTATAATTAC
1 ATTATTTTTTAT-ATTAC
3760706 ATTA
1 ATTA
3760710 CTTCCAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (17 bp):
ATTATTTTTTATATTAC
Found at i:3766463 original size:20 final size:20
Alignment explanation
Indices: 3766438--3766476 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
3766428 TTTAAATTTT
3766438 ATAATT-TATATATTTTTATC
1 ATAATTATAT-TATTTTTATC
3766458 ATAATTATATTATTTTTAT
1 ATAATTATATTATTTTTAT
3766477 ATTATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
ATAATTATATTATTTTTATC
Found at i:3766574 original size:28 final size:25
Alignment explanation
Indices: 3766513--3766578 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 25
3766503 TATAAAAAAA
3766513 TAATAATT-TATTTTATATAAATTT
1 TAATAATTATATTTTATATAAATTT
3766537 TAATATATTATATTTTATAATAATATTT
1 TAATA-ATTATATTTTAT-ATAA-ATTT
*
3766565 TATTTAATTATATT
1 TA-ATAATTATATT
3766579 AAATTTATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 5 0.14
25 3 0.08
26 8 0.22
27 4 0.11
28 14 0.39
29 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
TAATAATTATATTTTATATAAATTT
Found at i:3766589 original size:23 final size:24
Alignment explanation
Indices: 3766563--3766616 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
3766553 ATAATAATAT
3766563 TTTATTTAATTATAT-TAAATTTA
1 TTTATTTAATTATATGTAAATTTA
* * *
3766586 TTTATTTTATTATCTGTAATTTTA
1 TTTATTTAATTATATGTAAATTTA
*
3766610 TGTATTT
1 TTTATTT
3766617 GACTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 13 0.50
24 13 0.50
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTATTTAATTATATGTAAATTTA
Found at i:3767320 original size:29 final size:31
Alignment explanation
Indices: 3767252--3767316 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
3767242 TGATTAATGA
3767252 ATAATT-TTTTAAAATATAAAAAATATAATT
1 ATAATTATTTTAAAATATAAAAAATATAATT
*
3767282 ATTATTATTTT-AAAT-TAAATAAATA-AATT
1 ATAATTATTTTAAAATATAAA-AAATATAATT
3767311 A-AATTA
1 ATAATTA
3767317 ATTTGTGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 4 0.13
29 9 0.29
30 14 0.45
31 4 0.13
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (31 bp):
ATAATTATTTTAAAATATAAAAAATATAATT
Found at i:3767649 original size:17 final size:17
Alignment explanation
Indices: 3767604--3767656 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
3767594 TTTATAATTA
3767604 AATTTAAA-TAAA-AAT
1 AATTTAAATTAAATAAT
*
3767619 ATTTTATTAATTAAATAAT
1 AATTTA--AATTAAATAAT
*
3767638 AATTTAAATTAAATTAT
1 AATTTAAATTAAATAAT
3767655 AA
1 AA
3767657 ATATAAACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 5 0.16
17 14 0.45
18 4 0.13
19 8 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTTAAATTAAATAAT
Found at i:3768031 original size:20 final size:20
Alignment explanation
Indices: 3768008--3768107 Score: 60
Period size: 20 Copynumber: 4.8 Consensus size: 20
3767998 ATTTAGGATA
3768008 TTATATATTTATATAAATTT
1 TTATATATTTATATAAATTT
* * *
3768028 TTATATAATAATAATAATTTAT
1 TTATATATTTAT-ATAAATT-T
*
3768050 ATTATATAAATTTAAATAAATTT
1 -TTATAT--ATTTATATAAATTT
* *
3768073 ATATTATATTTGTAT-AATTT
1 TTA-TATATTTATATAAATTT
*
3768093 TTTTATTATTT-TATA
1 TTATA-TATTTATATA
3768108 TTTTAATTAT
Statistics
Matches: 60, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
19 5 0.08
20 21 0.35
21 12 0.20
22 3 0.05
23 10 0.17
24 6 0.10
25 3 0.05
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (20 bp):
TTATATATTTATATAAATTT
Found at i:3768058 original size:23 final size:25
Alignment explanation
Indices: 3768028--3768081 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
3768018 ATATAAATTT
3768028 TTATAT-AATA-ATAAT-AATTTATA
1 TTATATAAATATA-AATAAATTTATA
*
3768051 TTATATAAATTTAAATAAATTTATA
1 TTATATAAATATAAATAAATTTATA
3768076 TTATAT
1 TTATAT
3768082 TTGTATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 6 0.22
24 6 0.22
25 15 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TTATATAAATATAAATAAATTTATA
Found at i:3768710 original size:14 final size:16
Alignment explanation
Indices: 3768681--3768714 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
3768671 TTATTTTATA
3768681 ATTTAATATTTAAAAT
1 ATTTAATATTTAAAAT
3768697 ATTT-ATATTT-AAAT
1 ATTTAATATTTAAAAT
3768711 ATTT
1 ATTT
3768715 TAATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 6 0.33
16 4 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTAATATTTAAAAT
Found at i:3768720 original size:14 final size:14
Alignment explanation
Indices: 3768668--3768720 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
3768658 ACCCAACCAT
*
3768668 ATTTTAT-TTTATA
1 ATTTTATATTTAAA
*
3768681 ATTTAATATTTAAA
1 ATTTTATATTTAAA
3768695 ATATTTATATTTAAA
1 AT-TTTATATTTAAA
3768710 TATTTTA-ATTT
1 -ATTTTATATTT
3768721 TTTTATTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
13 6 0.18
14 11 0.32
15 15 0.44
16 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTTTATATTTAAA
Found at i:3770080 original size:32 final size:31
Alignment explanation
Indices: 3770044--3770103 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
3770034 GTTAAAAAAT
3770044 TAGTTTAAAAATAAAATGAAATATTAAATATA
1 TAGTTTAAAAATAAAAT-AAATATTAAATATA
* ** *
3770076 TAGTTTTATTATTAAATAAATATTAAAT
1 TAGTTTAAAAATAAAATAAATATTAAAT
3770104 TTAGTAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 11 0.46
32 13 0.54
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (31 bp):
TAGTTTAAAAATAAAATAAATATTAAATATA
Found at i:3770564 original size:12 final size:13
Alignment explanation
Indices: 3770536--3770563 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3770526 ATTAAATATT
3770536 AAATTTAAAAAAA
1 AAATTTAAAAAAA
3770549 AAATTTAAAAAAA
1 AAATTTAAAAAAA
3770562 AA
1 AA
3770564 TAAAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATTTAAAAAAA
Found at i:3770579 original size:17 final size:17
Alignment explanation
Indices: 3770538--3770581 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
3770528 TAAATATTAA
*
3770538 ATTTAAAAAAAAAATTT
1 ATTTAAAAATAAAATTT
***
3770555 AAAAAAAAATAAAATTT
1 ATTTAAAAATAAAATTT
3770572 ATTTAAAAAT
1 ATTTAAAAAT
3770582 TGAATCAAAT
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATTTAAAAATAAAATTT
Found at i:3770668 original size:22 final size:21
Alignment explanation
Indices: 3770635--3770702 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
3770625 CGAATAAATC
* *
3770635 TTTTT-TATTATAACTTTTATA
1 TTTTTATAATATAA-TTATATA
3770656 TTTTTATAATATAATTATATA
1 TTTTTATAATATAATTATATA
*
3770677 TATTTTATAAAAATAATTATA-A
1 T-TTTTAT-AATATAATTATATA
3770699 TTTT
1 TTTT
3770703 ATTTTACTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 15 0.37
22 15 0.37
23 11 0.27
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTTATAATATAATTATATA
Found at i:3770682 original size:23 final size:23
Alignment explanation
Indices: 3770652--3770697 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
3770642 TTATAACTTT
*
3770652 TATAT-TTTTAT-AATATAATTA
1 TATATATTTTATAAAAATAATTA
3770673 TATATATTTTATAAAAATAATTA
1 TATATATTTTATAAAAATAATTA
3770696 TA
1 TA
3770698 ATTTTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.23
22 6 0.27
23 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TATATATTTTATAAAAATAATTA
Found at i:3770791 original size:18 final size:18
Alignment explanation
Indices: 3770768--3770816 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
3770758 ATTTTTAAAA
3770768 TAATATTAATAAA-AAATT
1 TAATATTAA-AAATAAATT
*
3770786 TAATA-TAAAAATATATT
1 TAATATTAAAAATAAATT
3770803 TAATTATTAAAAAT
1 TAA-TATTAAAAAT
3770817 TATTTTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 3 0.11
17 10 0.37
18 7 0.26
19 7 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAATATTAAAAATAAATT
Found at i:3770805 original size:17 final size:18
Alignment explanation
Indices: 3770783--3770821 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
3770773 TTAATAAAAA
3770783 ATTTAA-TA-TAAAAATAT
1 ATTTAATTATTAAAAAT-T
3770800 ATTTAATTATTAAAAATT
1 ATTTAATTATTAAAAATT
3770818 ATTT
1 ATTT
3770822 TAAAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 7 0.35
19 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTAATTATTAAAAATT
Found at i:3771243 original size:27 final size:29
Alignment explanation
Indices: 3771213--3771270 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
3771203 TATAATGTGT
* *
3771213 TATTTATATT-TT-AAAATTTAATAAAAA
1 TATTTAAATTATTAAAAATTAAATAAAAA
3771240 TA-TTAAATTATTAAAAATTAAATAAAAA
1 TATTTAAATTATTAAAAATTAAATAAAAA
3771268 TAT
1 TAT
3771271 ATTTAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 6 0.23
27 4 0.15
28 16 0.62
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
TATTTAAATTATTAAAAATTAAATAAAAA
Found at i:3771348 original size:10 final size:10
Alignment explanation
Indices: 3771333--3771429 Score: 51
Period size: 10 Copynumber: 9.6 Consensus size: 10
3771323 TTTACAAACA
3771333 TAAATAAATT
1 TAAATAAATT
*
3771343 TAAATAAAAT
1 TAAATAAATT
3771353 TAAAT---TT
1 TAAATAAATT
3771360 TATAATTCAAATT
1 TA-AA-T-AAATT
* *
3771373 GAACTAAATT
1 TAAATAAATT
*
3771383 TAAATAAATA
1 TAAATAAATT
3771393 TAAAT-AATAT
1 TAAATAAAT-T
*
3771403 TAATATTATATT
1 TAA-A-TAAATT
*
3771415 TAAAT-ATTT
1 TAAATAAATT
3771424 TAAATA
1 TAAATA
3771430 TGATTTGATG
Statistics
Matches: 65, Mismatches: 11, Indels: 22
0.66 0.11 0.22
Matches are distributed among these distances:
7 3 0.05
8 2 0.03
9 11 0.17
10 35 0.54
11 3 0.05
12 6 0.09
13 5 0.08
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (10 bp):
TAAATAAATT
Found at i:3773901 original size:23 final size:23
Alignment explanation
Indices: 3773875--3773923 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
3773865 TTCGCCCTCA
3773875 AATAAATATCTTCAGCTTCTTCC
1 AATAAATATCTTCAGCTTCTTCC
3773898 AATAAATATCTTCAGCTTCTTCC
1 AATAAATATCTTCAGCTTCTTCC
3773921 AAT
1 AAT
3773924 TTCATCTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (23 bp):
AATAAATATCTTCAGCTTCTTCC
Found at i:3774960 original size:2 final size:2
Alignment explanation
Indices: 3774953--3774993 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
3774943 AAGTTTACTT
3774953 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3774994 GGAAGCAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3776882 original size:24 final size:24
Alignment explanation
Indices: 3776854--3776902 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
3776844 TATGATTTAG
3776854 TATAAGTAAAAGTTTAACCAATAA
1 TATAAGTAAAAGTTTAACCAATAA
3776878 TATAAGTAAAAGTTTAACCAATAA
1 TATAAGTAAAAGTTTAACCAATAA
3776902 T
1 T
3776903 TAATATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (24 bp):
TATAAGTAAAAGTTTAACCAATAA
Found at i:3777685 original size:15 final size:15
Alignment explanation
Indices: 3777636--3777691 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
3777626 AAAAATTTAA
3777636 AAATAATTATGTAAT
1 AAATAATTATGTAAT
*
3777651 AAA-AGGTATTATATTAAT
1 AAATA---ATTAT-GTAAT
3777669 AAATAATTATGTAAT
1 AAATAATTATGTAAT
3777684 AAATAATT
1 AAATAATT
3777692 TTTATTATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 1 0.03
15 15 0.44
16 5 0.15
17 5 0.15
18 7 0.21
19 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (15 bp):
AAATAATTATGTAAT
Found at i:3778491 original size:142 final size:141
Alignment explanation
Indices: 3778340--3778623 Score: 451
Period size: 142 Copynumber: 2.0 Consensus size: 141
3778330 TTAATTTTAT
* *
3778340 ATTTTAATATATTAAGTTATTTTATCATATAAAGGATCATATATGTAATATTTTAGGATAAATAT
1 ATTTTAATATATTAAGTGATTTTATCATATAAAGAATCATATATGTAATATTTTAGGATAAATAT
*
3778405 AAAAAATATATTAAGTTATTTAAATTTGGAATCTTAATAAAGAAAAATATTAAATTATCAAAAGT
66 AAAAAATATATTAAATTATTTAAATTTGGAATCTTAATAAA-AAAAATATTAAATTATCAAAAGT
*
3778470 TAAATTTTTAAA
130 TAAATTTTCAAA
* *
3778482 ATTTTAATATATTAAGTGATTTTATCATATAAAGAATTATATATGTAATATTTTAGTATAAATAT
1 ATTTTAATATATTAAGTGATTTTATCATATAAAGAATCATATATGTAATATTTTAGGATAAATAT
* * * * * *
3778547 TAAAAATATGTTAAATTATTTAAATTTTGAATCTTAATGAAAAAAATATTAAATTATTAAAGGTT
66 AAAAAATATATTAAATTATTTAAATTTGGAATCTTAATAAAAAAAATATTAAATTATCAAAAGTT
3778612 AAATTTTCAAA
131 AAATTTTCAAA
3778623 A
1 A
3778624 AATATATTAA
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
141 33 0.25
142 97 0.75
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (141 bp):
ATTTTAATATATTAAGTGATTTTATCATATAAAGAATCATATATGTAATATTTTAGGATAAATAT
AAAAAATATATTAAATTATTTAAATTTGGAATCTTAATAAAAAAAATATTAAATTATCAAAAGTT
AAATTTTCAAA
Found at i:3780274 original size:21 final size:21
Alignment explanation
Indices: 3780221--3780274 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
3780211 AATAATTAAA
*
3780221 TAAATAAATAGATATTATTTT
1 TAAATAAATAAATATTATTTT
**
3780242 TAAATATTTAAAT-TTATTTT
1 TAAATAAATAAATATTATTTT
*
3780262 TCATATAAATAAA
1 T-AAATAAATAAA
3780275 ATGGAGTCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
TAAATAAATAAATATTATTTT
Found at i:3781236 original size:10 final size:10
Alignment explanation
Indices: 3781221--3781247 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
3781211 CTTAAACTTG
3781221 ACATATATTA
1 ACATATATTA
3781231 ACATATATTA
1 ACATATATTA
3781241 ACATATA
1 ACATATA
3781248 GTTTGGCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (10 bp):
ACATATATTA
Found at i:3784570 original size:18 final size:18
Alignment explanation
Indices: 3784547--3784588 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
3784537 TTGTTTTTAA
3784547 AAATTATATATTTTATAT
1 AAATTATATATTTTATAT
*
3784565 AAATTATATATTTTGTAT
1 AAATTATATATTTTATAT
3784583 AAATTA
1 AAATTA
3784589 GATTTAGGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
AAATTATATATTTTATAT
Found at i:3787916 original size:50 final size:50
Alignment explanation
Indices: 3787615--3787917 Score: 385
Period size: 50 Copynumber: 6.1 Consensus size: 50
3787605 ATGTGTTGTC
* * * * ** **
3787615 ATTGTTGACTATTTTTCACAAACTTTTGACAATCGAGAGATATGACCGTA
1 ATTGTTGACTATTCTTCACTAACCTTTGACAATAGAGAGAGGTGGTCGTA
* * * * * *
3787665 ATTGTTAACAATTCATCACCAACCTTTGATAATCA-AGAGAGGTGGCCGTA
1 ATTGTTGACTATTCTTCACTAACCTTTGACAAT-AGAGAGAGGTGGTCGTA
* * * *
3787715 ATTATTGACTATTCTTCACCAACCTTTGATAATAGAGAGAGGTGGTTGTA
1 ATTGTTGACTATTCTTCACTAACCTTTGACAATAGAGAGAGGTGGTCGTA
*
3787765 ATTGTTGACTATTCTTCACTAACCTTTGATAATAGAGAGAGGTGGTCGTA
1 ATTGTTGACTATTCTTCACTAACCTTTGACAATAGAGAGAGGTGGTCGTA
*
3787815 ATTGTTGACTATTCTTCACTAACCTTTGACAATAGAGAGAGGTTGTCGTA
1 ATTGTTGACTATTCTTCACTAACCTTTGACAATAGAGAGAGGTGGTCGTA
*
3787865 ATTGTTGACTATTCTTCAAC-AACCTTTGACAATAGAGAGAGGTGGTTGTA
1 ATTGTTGACTATTCTTC-ACTAACCTTTGACAATAGAGAGAGGTGGTCGTA
3787915 ATT
1 ATT
3787918 TTTTACTCTA
Statistics
Matches: 226, Mismatches: 24, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
49 1 0.00
50 223 0.99
51 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (50 bp):
ATTGTTGACTATTCTTCACTAACCTTTGACAATAGAGAGAGGTGGTCGTA
Found at i:3792037 original size:50 final size:50
Alignment explanation
Indices: 3791978--3792233 Score: 311
Period size: 50 Copynumber: 5.1 Consensus size: 50
3791968 AGGTGTTGCC
* * * *
3791978 ATTGTTAACTATTCTTTA-CAAGTCTTTGACAATCGAGAGAAGTGGCTGTA
1 ATTGTTAACTATTCTTCACCAA-CCTTTGACAATAGAGAGAGGTGGCTGTA
* * * * *
3792028 ATTGTTAACTATTCTTTACCAACTTTTGACAATCGAGAGAGGTGACCGTA
1 ATTGTTAACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCTGTA
* * * *
3792078 ATTATTGACTATTCTTCACCAACCTTTAACAAGAGAGAGAGGTGG-TCGTA
1 ATTGTTAACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCT-GTA
* *
3792128 ATTGTTAACTATTCTTCACTAACCTTTGACAATAGAGAGAGGTGG-TCGTG
1 ATTGTTAACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCT-GTA
* *
3792178 ATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGACTGTA
1 ATTGTTAACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCTGTA
3792228 ATTGTT
1 ATTGTT
3792234 GACTCTAAGC
Statistics
Matches: 179, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
50 175 0.98
51 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (50 bp):
ATTGTTAACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCTGTA
Found at i:3793354 original size:2 final size:2
Alignment explanation
Indices: 3793347--3793380 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
3793337 CTTAGTCATC
3793347 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3793381 TTCAAAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3794943 original size:25 final size:25
Alignment explanation
Indices: 3794887--3794941 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
3794877 TAATAATAAT
* *
3794887 TAAAATTCTTTAAAATTATATTTATG
1 TAAAATT-ATTAAAATTATATTCATG
*
3794913 TCAAATTATTAAAA-TATATTCATG
1 TAAAATTATTAAAATTATATTCATG
3794937 TAAAA
1 TAAAA
3794942 ATAAATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 13 0.52
25 6 0.24
26 6 0.24
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (25 bp):
TAAAATTATTAAAATTATATTCATG
Found at i:3796517 original size:18 final size:18
Alignment explanation
Indices: 3796494--3796533 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
3796484 ATAAGATTAG
3796494 ATAGAATTTCAAGTTTAA
1 ATAGAATTTCAAGTTTAA
3796512 ATAGAATTTCAAGTTTAA
1 ATAGAATTTCAAGTTTAA
3796530 ATAG
1 ATAG
3796534 GCCCGTAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (18 bp):
ATAGAATTTCAAGTTTAA
Found at i:3797098 original size:2 final size:2
Alignment explanation
Indices: 3797082--3797114 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
3797072 ATTAACTTTA
*
3797082 AT AT -T AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3797115 GAAAAGAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3797930 original size:17 final size:17
Alignment explanation
Indices: 3797910--3797942 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3797900 AAATAATTAA
3797910 AAAAAAAGTT-AAAAACT
1 AAAAAAA-TTGAAAAACT
3797927 AAAAAAATTGAAAAAC
1 AAAAAAATTGAAAAAC
3797943 AGTTTTACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.73, C:0.06, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAAAAATTGAAAAACT
Found at i:3800412 original size:71 final size:73
Alignment explanation
Indices: 3800297--3800439 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 73
3800287 GAAACTATTT
* * **
3800297 TTTTTTCTTTTTGTGTTTTCTTTTTTCATAAGAAGTGCAACATTATCTCCAATCCAAACTCAATA
1 TTTTTTCTTTTTGTGTTTTCTATTTTCAAAAGAAGCACAACATTATCTCCAATCCAAACTCAATA
3800362 TATTGCTA
66 TATTGCTA
*
3800370 TTTTTT-TTTTTGTGTTTTC-ATTTTCAAAACG-AGCACAACATTATCTCCAATTCAAACTCAAT
1 TTTTTTCTTTTTGTGTTTTCTATTTTCAAAA-GAAGCACAACATTATCTCCAATCCAAACTCAAT
3800432 ATATTGCT
65 ATATTGCT
3800440 TTGATATACC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
71 44 0.69
72 14 0.22
73 6 0.09
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (73 bp):
TTTTTTCTTTTTGTGTTTTCTATTTTCAAAAGAAGCACAACATTATCTCCAATCCAAACTCAATA
TATTGCTA
Found at i:3803619 original size:27 final size:26
Alignment explanation
Indices: 3803546--3803619 Score: 60
Period size: 27 Copynumber: 2.8 Consensus size: 26
3803536 ATAGAAAGAT
* *
3803546 ATAATTTTTTTTAAAAAA-ATTATAA
1 ATAATATTTTTTAAAAAATAATATAA
* *** **
3803571 ATATTAAAATTTAAAATTTAATATAAA
1 ATAATATTTTTTAAAAAATAATAT-AA
3803598 ATAATATTTTTTAAAAAATAAT
1 ATAATATTTTTTAAAAAATAAT
3803620 TATATGAACT
Statistics
Matches: 33, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
25 11 0.33
26 4 0.12
27 18 0.55
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
ATAATATTTTTTAAAAAATAATATAA
Found at i:3806517 original size:6 final size:6
Alignment explanation
Indices: 3806508--3806563 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
3806498 ATATCCATAT
* * * *
3806508 ATATAG ATATAG ATAT-- ATATAG ATATAT AGATAT ATATAT ATATAG
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG
*
3806554 ATATAT ATAT
1 ATATAG ATAT
3806564 CAAGAGATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
4 4 0.09
6 39 0.91
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (6 bp):
ATATAG
Found at i:3806517 original size:8 final size:8
Alignment explanation
Indices: 3806506--3806560 Score: 83
Period size: 8 Copynumber: 6.9 Consensus size: 8
3806496 ATATATCCAT
3806506 ATATATAG
1 ATATATAG
* *
3806514 ATATAGAT
1 ATATATAG
3806522 ATATATAG
1 ATATATAG
3806530 ATATATAG
1 ATATATAG
*
3806538 ATATATAT
1 ATATATAG
3806546 ATATATAG
1 ATATATAG
3806554 ATATATA
1 ATATATA
3806561 TATCAAGAGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (8 bp):
ATATATAG
Found at i:3806517 original size:10 final size:10
Alignment explanation
Indices: 3806504--3806563 Score: 75
Period size: 10 Copynumber: 6.0 Consensus size: 10
3806494 ACATATATCC
*
3806504 ATATATATAG
1 ATATATATAT
*
3806514 ATATAGATAT
1 ATATATATAT
*
3806524 ATATAGATAT
1 ATATATATAT
*
3806534 ATAGATATAT
1 ATATATATAT
*
3806544 ATATATATAG
1 ATATATATAT
3806554 ATATATATAT
1 ATATATATAT
3806564 CAAGAGATTC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 43 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (10 bp):
ATATATATAT
Found at i:3806533 original size:24 final size:24
Alignment explanation
Indices: 3806506--3806560 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
3806496 ATATATCCAT
3806506 ATATATAGATATAGATATATATAG
1 ATATATAGATATAGATATATATAG
*
3806530 ATATATAGATATATATATATATAG
1 ATATATAGATATAGATATATATAG
3806554 ATATATA
1 ATATATA
3806561 TATCAAGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (24 bp):
ATATATAGATATAGATATATATAG
Found at i:3806563 original size:16 final size:16
Alignment explanation
Indices: 3806504--3806563 Score: 93
Period size: 16 Copynumber: 3.6 Consensus size: 16
3806494 ACATATATCC
*
3806504 ATATATATAGATATAG
1 ATATATATATATATAG
3806520 ATATATATAGATATATAG
1 ATATATAT--ATATATAG
3806538 ATATATATATATATAG
1 ATATATATATATATAG
3806554 ATATATATAT
1 ATATATATAT
3806564 CAAGAGATTC
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
16 26 0.63
18 15 0.37
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (16 bp):
ATATATATATATATAG
Found at i:3812195 original size:33 final size:33
Alignment explanation
Indices: 3812137--3812209 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
3812127 TATACATAGC
**
3812137 AATATCTAGTAATATCTTCGGTAAATGTAACAA
1 AATATCTAGTAATATCTTCAATAAATGTAACAA
* * * *
3812170 AATATCTAGTACTATCTTTAATAAATGTAATAT
1 AATATCTAGTAATATCTTCAATAAATGTAACAA
3812203 AATATCT
1 AATATCT
3812210 CTTTCCACCT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.38
Consensus pattern (33 bp):
AATATCTAGTAATATCTTCAATAAATGTAACAA
Found at i:3813979 original size:21 final size:20
Alignment explanation
Indices: 3813948--3813986 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
3813938 TCTTAACAGC
*
3813948 CCATGTTCATGTATTTTATG
1 CCATGTTCATGCATTTTATG
3813968 CCATGTTTCATGCATTTTA
1 CCATG-TTCATGCATTTTA
3813987 ACATGTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (20 bp):
CCATGTTCATGCATTTTATG
Found at i:3819635 original size:27 final size:26
Alignment explanation
Indices: 3819596--3819646 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
3819586 AGTTTTGCTT
*
3819596 GAAAAATAGGGTTGGAGTATCCTCAG
1 GAAAAATAAGGTTGGAGTATCCTCAG
*
3819622 GAAATAATAAGGTTGGAGTGTCCTC
1 GAAA-AATAAGGTTGGAGTATCCTC
3819647 GATGATGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (26 bp):
GAAAAATAAGGTTGGAGTATCCTCAG
Found at i:3822147 original size:21 final size:20
Alignment explanation
Indices: 3822103--3822177 Score: 98
Period size: 20 Copynumber: 3.7 Consensus size: 20
3822093 CAAAAACCAG
3822103 AATGTATCGATACAATAG-A
1 AATGTATCGATACAATAGTA
*
3822122 TAATGTATCGATATAAATAGTA
1 -AATGTATCGATA-CAATAGTA
*
3822144 AATGTATCGATACATTAGTA
1 AATGTATCGATACAATAGTA
*
3822164 AATGTATCAATACA
1 AATGTATCGATACA
3822178 TTTACTATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
20 31 0.63
21 17 0.35
22 1 0.02
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACAATAGTA
Found at i:3828295 original size:16 final size:16
Alignment explanation
Indices: 3828253--3828300 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
3828243 GAATTAGCAT
*
3828253 TAATCATAAATTTTAA
1 TAATCATAGATTTTAA
* * * *
3828269 GAATTACAGATTTTTA
1 TAATCATAGATTTTAA
3828285 TAATCATAGATTTTAA
1 TAATCATAGATTTTAA
3828301 ATACAACATA
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
TAATCATAGATTTTAA
Found at i:3830148 original size:14 final size:14
Alignment explanation
Indices: 3830131--3830159 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
3830121 CTTTTTGTTC
3830131 ATTATTGTTTACTA
1 ATTATTGTTTACTA
3830145 ATTATTGTTTACTA
1 ATTATTGTTTACTA
3830159 A
1 A
3830160 AAATTTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (14 bp):
ATTATTGTTTACTA
Found at i:3831067 original size:30 final size:29
Alignment explanation
Indices: 3831019--3831086 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 29
3831009 AATTTTTATA
3831019 TTTTATTTTACCCAAATAAA-TCATTAA-T
1 TTTTATTTTACCCAAATAAACTC-TTAACT
3831047 TTTTATTTTACACTCAAATAAACTCTTAACT
1 TTTTATTTTAC-C-CAAATAAACTCTTAACT
*
3831078 TTTAATTTT
1 TTTTATTTT
3831087 TATTTAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
28 11 0.31
29 1 0.03
30 12 0.34
31 11 0.31
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (29 bp):
TTTTATTTTACCCAAATAAACTCTTAACT
Found at i:3831103 original size:23 final size:24
Alignment explanation
Indices: 3831072--3831116 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
3831062 AAATAAACTC
*
3831072 TTAACTTTTAA-TTTTTATTTAAA
1 TTAACTTTTAACTTTTAATTTAAA
*
3831095 TTAATTTTTAACTTTTAATTTA
1 TTAACTTTTAACTTTTAATTTA
3831117 TACTTCTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (24 bp):
TTAACTTTTAACTTTTAATTTAAA
Found at i:3840566 original size:2 final size:2
Alignment explanation
Indices: 3840561--3840600 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
3840551 AGATACACAC
* * *
3840561 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3840601 GCACATTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3845737 original size:16 final size:16
Alignment explanation
Indices: 3845716--3845818 Score: 66
Period size: 16 Copynumber: 6.4 Consensus size: 16
3845706 ACTTTGTTAA
*
3845716 AGAATAATTATTATTT
1 AGAATAATTATTATTC
* * *
3845732 AGAATAATTTTTGTTT
1 AGAATAATTATTATTC
* *
3845748 AGAATAGTCATTAGTT-
1 AGAATAATTATTA-TTC
* * *
3845764 AAAATAATTCTTGTTC
1 AGAATAATTATTATTC
* *
3845780 AGAATAACTATAATTC
1 AGAATAATTATTATTC
*
3845796 AAAATAACTT-TTATTC
1 AGAATAA-TTATTATTC
3845812 AGAATAA
1 AGAATAA
3845819 GAGTCGTTCA
Statistics
Matches: 64, Mismatches: 20, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
15 2 0.03
16 59 0.92
17 3 0.05
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.42
Consensus pattern (16 bp):
AGAATAATTATTATTC
Found at i:3845753 original size:32 final size:32
Alignment explanation
Indices: 3845716--3845818 Score: 107
Period size: 32 Copynumber: 3.2 Consensus size: 32
3845706 ACTTTGTTAA
* *
3845716 AGAATAATTATTATTTAGAATAATTTTTGTTT
1 AGAATAATTATTATTTAAAATAATTTTTGTTC
* * * *
3845748 AGAATAGTCATTAGTTAAAATAATTCTTGTTC
1 AGAATAATTATTATTTAAAATAATTTTTGTTC
* * * * *
3845780 AGAATAACTATAATTCAAAATAACTTTTATTC
1 AGAATAATTATTATTTAAAATAATTTTTGTTC
3845812 AGAATAA
1 AGAATAA
3845819 GAGTCGTTCA
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.42
Consensus pattern (32 bp):
AGAATAATTATTATTTAAAATAATTTTTGTTC
Found at i:3845940 original size:16 final size:16
Alignment explanation
Indices: 3845919--3845971 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
3845909 AAATAGTTTG
3845919 TTATTCAAAATAACTC
1 TTATTCAAAATAACTC
*
3845935 TTATTCAAAATAACTA
1 TTATTCAAAATAACTC
* *
3845951 TTGTTCAAAACAACTC
1 TTATTCAAAATAACTC
3845967 TTATT
1 TTATT
3845972 TAGAATCACT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.40
Consensus pattern (16 bp):
TTATTCAAAATAACTC
Found at i:3846305 original size:44 final size:44
Alignment explanation
Indices: 3846220--3846307 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
3846210 AGCAAAAAAA
* * * *
3846220 ATAGAAATAACCTTAGAATGTAGTAGGGCACTTAGGTTTTTCAC
1 ATAGAAATAACCTTAGAATGTAGCACGGCACTTAAGCTTTTCAC
* **
3846264 ATAGAAATAACCTTGGAATGTAGCACGGTTCTTAAGCTTTTCAC
1 ATAGAAATAACCTTAGAATGTAGCACGGCACTTAAGCTTTTCAC
3846308 TATTGAGATG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (44 bp):
ATAGAAATAACCTTAGAATGTAGCACGGCACTTAAGCTTTTCAC
Found at i:3848307 original size:22 final size:23
Alignment explanation
Indices: 3848255--3848305 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
3848245 AAATTGAACC
*
3848255 AAAAAAGCTTATGATCTTCGCTG
1 AAAAAAGTTTATGATCTTCGCTG
* *
3848278 AAAAAAGTTTATGATCTTGGTTG
1 AAAAAAGTTTATGATCTTCGCTG
3848301 AAAAA
1 AAAAA
3848306 GTATAACTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (23 bp):
AAAAAAGTTTATGATCTTCGCTG
Found at i:3853790 original size:38 final size:38
Alignment explanation
Indices: 3853748--3853826 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
3853738 ATTGCATATT
3853748 GAAAAAAAATCAAAGTTGCAAAGTTATTTAAATATAGA
1 GAAAAAAAATCAAAGTTGCAAAGTTATTTAAATATAGA
3853786 GAAAAAAAATCAAAGTTGCAAAGTTATTTAAATATAGA
1 GAAAAAAAATCAAAGTTGCAAAGTTATTTAAATATAGA
3853824 GAA
1 GAA
3853827 TTGTGTTTCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.56, C:0.05, G:0.14, T:0.25
Consensus pattern (38 bp):
GAAAAAAAATCAAAGTTGCAAAGTTATTTAAATATAGA
Found at i:3856628 original size:22 final size:22
Alignment explanation
Indices: 3856600--3856641 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
3856590 TTAGGTAAAT
*
3856600 ATATTAGGTGTATTGGGTGAGC
1 ATATTAGGTGTATTAGGTGAGC
*
3856622 ATATTAGGTGTGTTAGGTGA
1 ATATTAGGTGTATTAGGTGA
3856642 TATGTTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.02, G:0.36, T:0.38
Consensus pattern (22 bp):
ATATTAGGTGTATTAGGTGAGC
Found at i:3859267 original size:15 final size:16
Alignment explanation
Indices: 3859237--3859295 Score: 70
Period size: 15 Copynumber: 3.8 Consensus size: 16
3859227 TTAAATATAA
*
3859237 AATAATAATATTTAAAT
1 AATAATAATA-ATAAAT
*
3859254 AAT-ATATTAATAAAT
1 AATAATAATAATAAAT
3859269 -ATAATAATAATAAAT
1 AATAATAATAATAAAT
3859284 AAT-ATAATAATA
1 AATAATAATAATA
3859296 TATTAAACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
14 2 0.05
15 25 0.68
16 7 0.19
17 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AATAATAATAATAAAT
Found at i:3859269 original size:12 final size:13
Alignment explanation
Indices: 3859228--3859298 Score: 55
Period size: 11 Copynumber: 5.7 Consensus size: 13
3859218 ACACGATATT
*
3859228 TAAATATAAAATAA
1 TAAATAT-ATATAA
*
3859242 T-AATATTTA-AA
1 TAAATATATATAA
3859253 T-AATATAT-TAA
1 TAAATATATATAA
3859264 TAAATATAATAATAA
1 TAAATAT-AT-ATAA
3859279 TAAATA-ATATAA
1 TAAATATATATAA
3859291 T-AATATAT
1 TAAATATAT
3859299 TAAACAATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
11 16 0.33
12 13 0.27
13 9 0.19
14 1 0.02
15 9 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATATATATAA
Found at i:3859283 original size:30 final size:30
Alignment explanation
Indices: 3859233--3859295 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
3859223 ATATTTAAAT
* *
3859233 ATAAAATAATAATATTTAAATAATATATTA
1 ATAAAATAATAATATATAAATAATATAATA
3859263 ATAAATATAATAATA-ATAAATAATATAATA
1 ATAAA-ATAATAATATATAAATAATATAATA
3859293 ATA
1 ATA
3859296 TATTAAACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (30 bp):
ATAAAATAATAATATATAAATAATATAATA
Found at i:3859298 original size:38 final size:36
Alignment explanation
Indices: 3859228--3859301 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 36
3859218 ACACGATATT
*
3859228 TAAATATAAAATAATAATATTTAAATAATATATTAA
1 TAAATATAAAATAATAATATATAAATAATATATTAA
3859264 TAAATATAATAATAATAA-ATAATATAATAATATATTAA
1 TAAATATAA-AATAATAATAT-ATA-AATAATATATTAA
3859302 ACAATTAGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
36 11 0.32
37 10 0.29
38 13 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (36 bp):
TAAATATAAAATAATAATATATAAATAATATATTAA
Found at i:3865389 original size:22 final size:22
Alignment explanation
Indices: 3865354--3865395 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
3865344 AAAATTTATT
3865354 TAAATTTAATTATAAAAATAAA
1 TAAATTTAATTATAAAAATAAA
3865376 TAAATATTAA-TATAAAAATA
1 TAAAT-TTAATTATAAAAATA
3865396 TTTTTTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
TAAATTTAATTATAAAAATAAA
Found at i:3870197 original size:2 final size:2
Alignment explanation
Indices: 3870190--3870221 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
3870180 TTGGTTTGTA
3870190 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3870222 TAAAGCGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3876290 original size:29 final size:29
Alignment explanation
Indices: 3876257--3876312 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
3876247 ATATTGATTA
*
3876257 CTTAATTTTGCCTAATAACCAAACTACTG
1 CTTAATTATGCCTAATAACCAAACTACTG
*
3876286 CTTAATTATGCCTAATAGCCAAACTAC
1 CTTAATTATGCCTAATAACCAAACTAC
3876313 AGCTAACAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (29 bp):
CTTAATTATGCCTAATAACCAAACTACTG
Found at i:3881849 original size:36 final size:36
Alignment explanation
Indices: 3881797--3881875 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
3881787 TTTGTTTATA
3881797 TTTACATGAAGTAAAAATGTTTTACTTAGGCTAGAAT
1 TTTA-ATGAAGTAAAAATGTTTTACTTAGGCTAGAAT
3881834 TTTAATGAAGTAAAAATGTTTTACTTAGGCTAGAAT
1 TTTAATGAAGTAAAAATGTTTTACTTAGGCTAGAAT
3881870 TTTAAT
1 TTTAAT
3881876 TAATTTTTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 38 0.90
37 4 0.10
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (36 bp):
TTTAATGAAGTAAAAATGTTTTACTTAGGCTAGAAT
Found at i:3887716 original size:45 final size:46
Alignment explanation
Indices: 3887596--3887723 Score: 150
Period size: 47 Copynumber: 2.8 Consensus size: 46
3887586 AGATGAGAGG
* * *
3887596 AGTGCCAATGTGCCAATTCAAGGCCAACGACATTGAGCTAAGGAAA
1 AGTGCCAATGTGCTAATTCAAGGCCAGCGACATCGAGCTAAGGAAA
* *
3887642 AGTGGACAATGTGCTAATTCAAGGCCAGCGACATCGAGCTAA-TAAA
1 AGT-GCCAATGTGCTAATTCAAGGCCAGCGACATCGAGCTAAGGAAA
* * * * *
3887688 GGTGCCAATATGCTGATTCAATGCCAGCGATATCGA
1 AGTGCCAATGTGCTAATTCAAGGCCAGCGACATCGA
3887724 ACTTTAAGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
45 28 0.40
46 8 0.11
47 34 0.49
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.20
Consensus pattern (46 bp):
AGTGCCAATGTGCTAATTCAAGGCCAGCGACATCGAGCTAAGGAAA
Found at i:3887942 original size:28 final size:28
Alignment explanation
Indices: 3887879--3888021 Score: 155
Period size: 28 Copynumber: 5.0 Consensus size: 28
3887869 AAAAAAGAGT
*
3887879 TGCCACCGACTTGTGTAGGCTTTGAAAGGA
1 TGCCACTGACTTGTG-A-GCTTTGAAAGGA
*
3887909 TGCCACTGACTTGTGAGCTTTGAAAAGA
1 TGCCACTGACTTGTGAGCTTTGAAAGGA
* * *
3887937 TACCACT-ATCTTGTGGGTTTTGAAAAGG-
1 TGCCACTGA-CTTGTGAGCTTTG-AAAGGA
* *
3887965 TGCTACTGACTTGTGGGCTTTGAAAGGGTA
1 TGCCACTGACTTGTGAGCTTTGAAA-GG-A
3887995 TGCCACTGACTTGTGAGCTTTGAAAGG
1 TGCCACTGACTTGTGAGCTTTGAAAGG
3888022 GTACCATCGA
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
27 4 0.04
28 47 0.49
29 8 0.08
30 37 0.39
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (28 bp):
TGCCACTGACTTGTGAGCTTTGAAAGGA
Found at i:3899483 original size:229 final size:228
Alignment explanation
Indices: 3899083--3899541 Score: 683
Period size: 229 Copynumber: 2.0 Consensus size: 228
3899073 AATATAAAGC
* * *
3899083 CATTGCAAACACAATAGTCGAACATATTTGGATTCATAATCTTTATTTAAGTTGCAAGTTCCACA
1 CATTGCAAACACAATAGTCAAACATATTTAGATTCATAATCTTTATCTAAGTTGCAAGTTCCACA
** * * *
3899148 AACCAAACCAACCTTGATTTTATGTGATAATGTTGGAGCAACTTATCCTTACTCAAATGTTGTTT
66 AACCAAACCAACCTTGATTCAATGTGATAATGTTAGAACAACTTATCCTTACTCAAATCTTGTTT
*
3899213 TTCACTCTCGCATGAAACACATTACACTAGATTATCATTTTGTTCGAGAACAAGTT-GTAGCTGG
131 TTCACTCTAGCATGAAACACATTACACTAGATTATCATTTTGTTCGAGAACAAGTTAG-AGCTGG
*
3899277 TTGCCTTTAAGTGTTTCATGTCCATTCAAAAGAT
195 TTGCCTTTAAGTGTCTCATGTCCATTCAAAAGAT
*
3899311 CATTGCAAACACAATAG-CTAAACTTATTTAGATTCATAATCTCTTATCTAAGTTGCAAGTTCCA
1 CATTGCAAACACAATAGTC-AAACATATTTAGATTCATAATCT-TTATCTAAGTTGCAAGTTCCA
* * * * *
3899375 CAAACCAAACCAGCTTTGATTCAATGTGATAATGTTAGAACAATTTAT-CTCTGCTCAATTCTTG
64 CAAACCAAACCAACCTTGATTCAATGTGATAATGTTAGAACAACTTATCCT-TACTCAAATCTTG
* *
3899439 TTTTTCACTCTAGCATGAAACATC-TTGCACTAGATTATCATTTTGTTTGAGAACAAGTTAGAGC
128 TTTTTCACTCTAGCATGAAACA-CATTACACTAGATTATCATTTTGTTCGAGAACAAGTTAGAGC
3899503 TGGTTGCCTTTAAGTGTCTCATGTCCATTCAAAAGAT
192 TGGTTGCCTTTAAGTGTCTCATGTCCATTCAAAAGAT
3899540 CA
1 CA
3899542 ACTTGCTGAT
Statistics
Matches: 208, Mismatches: 18, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
227 1 0.00
228 39 0.19
229 166 0.80
230 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (228 bp):
CATTGCAAACACAATAGTCAAACATATTTAGATTCATAATCTTTATCTAAGTTGCAAGTTCCACA
AACCAAACCAACCTTGATTCAATGTGATAATGTTAGAACAACTTATCCTTACTCAAATCTTGTTT
TTCACTCTAGCATGAAACACATTACACTAGATTATCATTTTGTTCGAGAACAAGTTAGAGCTGGT
TGCCTTTAAGTGTCTCATGTCCATTCAAAAGAT
Found at i:3900491 original size:14 final size:14
Alignment explanation
Indices: 3900474--3900530 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
3900464 AAAGTTTTAA
3900474 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
*
3900488 AAAAAAAGATAAAAG
1 AAAAAAA-AGAAAAG
* * *
3900503 CAAAAAAGGGAAAG
1 AAAAAAAAGAAAAG
**
3900517 AAATTAAAGAAAAG
1 AAAAAAAAGAAAAG
3900531 TTGATTAGGA
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:3901738 original size:32 final size:33
Alignment explanation
Indices: 3901688--3901749 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
3901678 ATTTGTGTAA
* *
3901688 TTTAATTTGATTTATAAAAATTTAAAATTTATT
1 TTTAATTTGAATTATAAAAATGTAAAATTTATT
*
3901721 TTTAATTT-AATTATAAAACTGTAAAATTT
1 TTTAATTTGAATTATAAAAATGTAAAATTT
3901750 TAAGATTGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 18 0.69
33 8 0.31
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (33 bp):
TTTAATTTGAATTATAAAAATGTAAAATTTATT
Found at i:3904991 original size:129 final size:136
Alignment explanation
Indices: 3904854--3905123 Score: 405
Period size: 129 Copynumber: 2.0 Consensus size: 136
3904844 TAAAATTTTA
*
3904854 TAAATTTTTT-TGTTTTA-AAAAACATAATAATTAATATTTTAATTTGTTAATATAAATTTTTTA
1 TAAATTTTTTAT-TTTTATAAAAACATAATAATTAATATTTTAA-TTATTAATATAAATTTTTTA
* *
3904917 AACTTAATTAAATATT-TTTTTTATTTTATT-AAAAATTAT-AATA-AAAACC-TTT-TTT-ATT
64 AACTTAATTAAATATTATTTTTAATTTTATTAAAAAATAATAAATATAAAACCTTTTATTTAATT
3904975 TTTTATTT
129 TTTTATTT
*
3904983 TAAATTTTTTATTTTTATAAAAACATAATAATTAATATTTTAATTATTAATATAATTTTTTTAAA
1 TAAATTTTTTATTTTTATAAAAACATAATAATTAATATTTTAATTATTAATATAAATTTTTTAAA
*
3905048 CTTAATTAAATATTATTTTTAATTTTATTAAAAAATAATAAATATAAACCCTTTTAATTTAATTT
66 CTTAATTAAATATTATTTTTAATTTTATTAAAAAATAATAAATATAAAACCTTTT-ATTTAATTT
3905113 TTTATTT
130 TTTATTT
3905120 TAAA
1 TAAA
3905124 AAAATAATTA
Statistics
Matches: 126, Mismatches: 5, Indels: 12
0.88 0.03 0.08
Matches are distributed among these distances:
129 49 0.39
130 39 0.31
131 8 0.06
132 4 0.03
133 5 0.04
134 3 0.02
136 3 0.02
137 15 0.12
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (136 bp):
TAAATTTTTTATTTTTATAAAAACATAATAATTAATATTTTAATTATTAATATAAATTTTTTAAA
CTTAATTAAATATTATTTTTAATTTTATTAAAAAATAATAAATATAAAACCTTTTATTTAATTTT
TTATTT
Found at i:3905077 original size:22 final size:23
Alignment explanation
Indices: 3905026--3905079 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
3905016 AATATTTTAA
3905026 TTATTAATATAATTTTTTTAAACT
1 TTATTAA-ATAATTTTTTTAAACT
* *
3905050 TAATTAAAT-ATTATTTTT-AATT
1 TTATTAAATAATT-TTTTTAAACT
3905072 TTATTAAA
1 TTATTAAA
3905080 AAATAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 13 0.50
23 7 0.27
24 6 0.23
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
TTATTAAATAATTTTTTTAAACT
Found at i:3905396 original size:24 final size:22
Alignment explanation
Indices: 3905362--3905412 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 22
3905352 ATAAATTTCA
3905362 TAAAAATAAATTAAATTA-ATTT
1 TAAAAATAAA-TAAATTAGATTT
3905384 TAAAAATAAAAATAAATTAGATTT
1 TAAAAAT--AAATAAATTAGATTT
3905408 TAAAA
1 TAAAA
3905413 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.27
23 7 0.27
24 12 0.46
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
TAAAAATAAATAAATTAGATTT
Found at i:3905399 original size:23 final size:23
Alignment explanation
Indices: 3905362--3905412 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
3905352 ATAAATTTCA
*
3905362 TAAAAATAAATTAAATTA-ATTT
1 TAAAAATAAAATAAATTAGATTT
3905384 TAAAAATAAAAATAAATTAGATTT
1 TAAAAAT-AAAATAAATTAGATTT
3905408 TAAAA
1 TAAAA
3905413 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 7 0.27
23 10 0.38
24 9 0.35
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAAAATAAAATAAATTAGATTT
Found at i:3905629 original size:21 final size:23
Alignment explanation
Indices: 3905593--3905634 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
3905583 ATAAATAAAA
3905593 AAATTATACTTAAAAAAAGTTTT
1 AAATTATACTTAAAAAAAGTTTT
3905616 AAATTAT-C-TAAAAAAAGTT
1 AAATTATACTTAAAAAAAGTT
3905635 AAATTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
22 1 0.05
23 7 0.37
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (23 bp):
AAATTATACTTAAAAAAAGTTTT
Found at i:3905636 original size:19 final size:22
Alignment explanation
Indices: 3905593--3905640 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
3905583 ATAAATAAAA
3905593 AAATTATACTTAAAAAAAGTTTT
1 AAATTATACTTAAAAAAAG-TTT
3905616 AAATTAT-C-TAAAAAAAG-TT
1 AAATTATACTTAAAAAAAGTTT
3905635 AAATTA
1 AAATTA
3905641 AATTTGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
21 9 0.36
22 1 0.04
23 7 0.28
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.35
Consensus pattern (22 bp):
AAATTATACTTAAAAAAAGTTT
Found at i:3905734 original size:31 final size:34
Alignment explanation
Indices: 3905696--3905788 Score: 102
Period size: 34 Copynumber: 2.7 Consensus size: 34
3905686 AAATCATACC
3905696 TTAAATTTTTTAAATTTAATTAA-ATATTA-TT-
1 TTAAATTTTTTAAATTTAATTAATATATTATTTA
* **
3905727 TTAAATTTTATAAAAAATAAAAATTAATATATTATTTA
1 TTAAATTTT-T--TAAAT-TTAATTAATATATTATTTA
3905765 TTAAATTTTTTAAATTTAATTAAT
1 TTAAATTTTTTAAATTTAATTAAT
3905789 TTGTATTGAG
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
31 9 0.18
32 1 0.02
34 11 0.22
35 10 0.20
36 6 0.12
37 3 0.06
38 9 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (34 bp):
TTAAATTTTTTAAATTTAATTAATATATTATTTA
Found at i:3906156 original size:34 final size:35
Alignment explanation
Indices: 3906086--3906158 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 35
3906076 TAATATTTAA
* *
3906086 TTATCATTTAATATAAATATAGCTTTTTACGTATTT
1 TTATCATTTAATATAAATATA-CATTTTACATATTT
*
3906122 TTATTATTTAATATAAATATA-ATTTTA-ATAATTT
1 TTATCATTTAATATAAATATACATTTTACAT-ATTT
3906156 TTA
1 TTA
3906159 ATATATAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 1 0.03
34 12 0.36
36 20 0.61
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.55
Consensus pattern (35 bp):
TTATCATTTAATATAAATATACATTTTACATATTT
Found at i:3906163 original size:27 final size:28
Alignment explanation
Indices: 3906124--3906250 Score: 118
Period size: 27 Copynumber: 4.4 Consensus size: 28
3906114 ACGTATTTTT
3906124 ATTATTTAATATAAATATAATTTTAATA
1 ATTATTTAATATAAATATAATTTTAATA
*
3906152 ATT-TTTAATATATAA-ATAATTTTAATT
1 ATTATTTAATATA-AATATAATTTTAATA
* *
3906179 ATTATTCAACATAAAT-TCAATTTTAATTATA
1 ATTATTTAATATAAATAT-AATTTT-A--ATA
3906210 TTTTATTATTTAATATAAATATAATTTTAATA
1 ----ATTATTTAATATAAATATAATTTTAATA
3906242 ATT-TTTAAT
1 ATTATTTAAT
3906251 TATTTATTAT
Statistics
Matches: 81, Mismatches: 6, Indels: 25
0.72 0.05 0.22
Matches are distributed among these distances:
27 32 0.40
28 21 0.26
29 1 0.01
31 2 0.02
32 3 0.04
34 1 0.01
35 20 0.25
36 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (28 bp):
ATTATTTAATATAAATATAATTTTAATA
Found at i:3906255 original size:35 final size:35
Alignment explanation
Indices: 3906166--3906261 Score: 99
Period size: 35 Copynumber: 2.7 Consensus size: 35
3906156 TTAATATATA
*
3906166 AATAA-TTTTAATTATTATTCAACATAAATTCAATTTT
1 AATAATTTTTAATTA-T-TT-AATATAAATTCAATTTT
*
3906203 AATTATATTTT-ATTATTTAATATAAATAT-AATTTT
1 AATAAT-TTTTAATTATTTAATATAAAT-TCAATTTT
*
3906238 AATAATTTTTAATTATTTATTATA
1 AATAATTTTTAATTATTTAATATA
3906262 TATACATATT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
34 4 0.08
35 31 0.61
36 3 0.06
37 5 0.10
38 4 0.08
39 4 0.08
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (35 bp):
AATAATTTTTAATTATTTAATATAAATTCAATTTT
Found at i:3906972 original size:15 final size:15
Alignment explanation
Indices: 3906952--3906981 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3906942 CAAGAGGAGC
3906952 AAAAAAATTAAAAAA
1 AAAAAAATTAAAAAA
3906967 AAAAAAATTAAAAAA
1 AAAAAAATTAAAAAA
3906982 TCCCATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAAAATTAAAAAA
Found at i:3907517 original size:33 final size:33
Alignment explanation
Indices: 3907480--3907545 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
3907470 ATGGATGAGC
*
3907480 TTTTGATTGTTCCTTATGGCTTTTCTATTTGCA
1 TTTTGATTGTTCCTTATCGCTTTTCTATTTGCA
*
3907513 TTTTGATTGTTCCTTATCGCTTTTTTATTTGCA
1 TTTTGATTGTTCCTTATCGCTTTTCTATTTGCA
3907546 GTGAGATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.12, C:0.15, G:0.14, T:0.59
Consensus pattern (33 bp):
TTTTGATTGTTCCTTATCGCTTTTCTATTTGCA
Found at i:3909391 original size:24 final size:23
Alignment explanation
Indices: 3909356--3909403 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
3909346 ATGATTCCAA
3909356 TGCATAAATTAATTTACAAACTT
1 TGCATAAATTAATTTACAAACTT
*
3909379 TGCATACAATTAATTTACTAACTT
1 TGCATA-AATTAATTTACAAACTT
3909403 T
1 T
3909404 TCTTTTAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.42
Consensus pattern (23 bp):
TGCATAAATTAATTTACAAACTT
Found at i:3909826 original size:4 final size:4
Alignment explanation
Indices: 3909819--3909855 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
3909809 TGTCAGTAAC
3909819 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
3909856 ATTTGTTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:3911899 original size:23 final size:22
Alignment explanation
Indices: 3911851--3911897 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
3911841 TAAGTTCTAG
3911851 TTTAATTCAAATGATTTAAGAA
1 TTTAATTCAAATGATTTAAGAA
*
3911873 TTTAATTCGAATGATTTTAA-AA
1 TTTAATTCAAATGA-TTTAAGAA
3911895 TTT
1 TTT
3911898 TATTTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (22 bp):
TTTAATTCAAATGATTTAAGAA
Found at i:3912418 original size:2 final size:2
Alignment explanation
Indices: 3912405--3912439 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
3912395 TACATTTAAA
*
3912405 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3912440 AGAAAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:3913388 original size:39 final size:38
Alignment explanation
Indices: 3913270--3913417 Score: 113
Period size: 39 Copynumber: 3.7 Consensus size: 38
3913260 TGATTCATGA
* *
3913270 AAATAAAATAAAATAA-AAATAAATTAATTATTTGATA
1 AAATAAAATAAAATAAGAAATATATTAATTATTTGATT
* * * *
3913307 AAATAAAATAAAATGAATATAAATTTTATTTAGTTTAATTGATT
1 AAATAAAATAAAAT--A-AGAAA-TATA-TTA-ATTATTTGATT
3913351 AAATAAAAT-AAATAAGAAATAGTATTACATTATTTGATT
1 AAATAAAATAAAATAAGAAATA-TATTA-ATTATTTGATT
* * *
3913390 AATTAAAATAATATTAAGAACTA-ATTAA
1 AAATAAAATAA-AATAAGAAATATATTAA
3913418 GTGCAAAATT
Statistics
Matches: 88, Mismatches: 13, Indels: 19
0.73 0.11 0.16
Matches are distributed among these distances:
37 14 0.16
38 1 0.01
39 26 0.30
40 8 0.09
41 13 0.15
42 2 0.02
43 7 0.08
44 17 0.19
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (38 bp):
AAATAAAATAAAATAAGAAATATATTAATTATTTGATT
Found at i:3913586 original size:12 final size:12
Alignment explanation
Indices: 3913571--3913694 Score: 58
Period size: 12 Copynumber: 9.8 Consensus size: 12
3913561 TTTAATATGT
3913571 TATATTTAAAAA
1 TATATTTAAAAA
*
3913583 TATATTTATAAA
1 TATATTTAAAAA
3913595 TAATATTTTATATATAA
1 T-ATA-TTTA-A-A-AA
*
3913612 TAATATAATAAAAA
1 T-ATAT-TTAAAAA
*
3913626 CTATA-TTAAAAT
1 -TATATTTAAAAA
*
3913638 TA-AATTAAAAA
1 TATATTTAAAAA
* *
3913649 TCTATAT-AAAA
1 TATATTTAAAAA
*
3913660 TA-ATATTATAAA
1 TATAT-TTAAAAA
3913672 TATCAGTTTAAAAA
1 TAT-A-TTTAAAAA
3913686 TATATTTAA
1 TATATTTAA
3913695 TATATTTTAT
Statistics
Matches: 85, Mismatches: 13, Indels: 28
0.67 0.10 0.22
Matches are distributed among these distances:
10 3 0.04
11 15 0.18
12 29 0.34
13 4 0.05
14 19 0.22
15 3 0.04
16 3 0.04
17 9 0.11
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (12 bp):
TATATTTAAAAA
Found at i:3915463 original size:3 final size:3
Alignment explanation
Indices: 3915455--3915488 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
3915445 CAAAATACAT
3915455 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
3915489 ATGCAACCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:3915821 original size:9 final size:9
Alignment explanation
Indices: 3915809--3916081 Score: 99
Period size: 9 Copynumber: 31.3 Consensus size: 9
3915799 TGGAAAACCA
3915809 AAAAATTAT
1 AAAAATTAT
3915818 AAAAA-T-T
1 AAAAATTAT
*
3915825 GAAAA--AT
1 AAAAATTAT
3915832 AAAAATTCA-
1 AAAAATT-AT
3915841 AAAAATTAT
1 AAAAATTAT
*
3915850 AAATATTAT
1 AAAAATTAT
3915859 --AAA--AT
1 AAAAATTAT
3915864 -AAAATTAT
1 AAAAATTAT
3915872 AAAAATT-T
1 AAAAATTAT
*
3915880 ATAAAATTAAA
1 A-AAAATT-AT
3915891 AATAAATTAT
1 AA-AAATTAT
* *
3915901 AAAACTTCAG
1 AAAAATT-AT
**
3915911 AAAATGAAAAT
1 AAAA--ATTAT
3915922 AAAAATTAT
1 AAAAATTAT
3915931 AAAAATTAT
1 AAAAATTAT
3915940 -AAAATCTAT
1 AAAAAT-TAT
3915949 -AAAATTAT
1 AAAAATTAT
3915957 AAAAATT-T
1 AAAAATTAT
*
3915965 ATAAA--AT
1 AAAAATTAT
3915972 AAAAA--AT
1 AAAAATTAT
3915979 -AAAATT-T
1 AAAAATTAT
*
3915986 TAAAATTATT
1 AAAAATTA-T
3915996 AAAAA-TAT
1 AAAAATTAT
*
3916004 GTAAAATTA-
1 -AAAAATTAT
3916013 AAAAATATAT
1 AAAAAT-TAT
* *
3916023 AAAAAATAAA
1 -AAAAATTAT
*
3916033 AATAAATTTT
1 AA-AAATTAT
**
3916043 TGAAATTAT
1 AAAAATTAT
3916052 AAAAAATTAT
1 -AAAAATTAT
*
3916062 -TAAATTCA-
1 AAAAATT-AT
3916070 AAAAATTAT
1 AAAAATTAT
3916079 AAA
1 AAA
3916082 GTTTTTACAA
Statistics
Matches: 199, Mismatches: 31, Indels: 68
0.67 0.10 0.23
Matches are distributed among these distances:
5 2 0.01
6 7 0.04
7 20 0.10
8 37 0.19
9 87 0.44
10 29 0.15
11 17 0.09
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:3915822 original size:32 final size:32
Alignment explanation
Indices: 3915802--3915896 Score: 99
Period size: 32 Copynumber: 3.1 Consensus size: 32
3915792 GAAAAAATGG
3915802 AAAA-CCAAAAAATTATAAAAATTGAAAAATA
1 AAAATCCAAAAAATTATAAAAATTGAAAAATA
* *
3915833 AAAATTCAAAAAATTATAAATATT-ATAAAATA
1 AAAATCCAAAAAATTATAAAAATTGA-AAAATA
* ** *
3915865 AAATTATAAAAATTTAT-AAAATT-AAAAATA
1 AAAATCCAAAAAATTATAAAAATTGAAAAATA
3915895 AA
1 AA
3915897 TTATAAAACT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
30 8 0.15
31 11 0.20
32 36 0.65
ACGTcount: A:0.68, C:0.03, G:0.01, T:0.27
Consensus pattern (32 bp):
AAAATCCAAAAAATTATAAAAATTGAAAAATA
Found at i:3915863 original size:40 final size:38
Alignment explanation
Indices: 3915813--3915953 Score: 108
Period size: 40 Copynumber: 3.4 Consensus size: 38
3915803 AAACCAAAAA
3915813 ATTATAAAAATTGAAAAATAAAAATTCAAAAAATTATAAAT
1 ATTAT-AAAATT-AAAAATAAAAATT-AAAAAATTATAAAT
* *
3915854 ATTATAAAA-TAAAATTATAAAAATTTATAAAATTAAAAAT
1 ATTATAAAATTAAAA--ATAAAAA-TTAAAAAATTATAAAT
* *
3915894 AAATTATAAAACTTCAGAAAATGAAAA-T-AAAAATTATAAAA
1 --ATTATAAAA-TT-A-AAAATAAAAATTAAAAAATTATAAAT
3915935 ATTATAAAATCTATAAAAT
1 ATTATAAAAT-TA-AAAAT
3915954 TATAAAAATT
Statistics
Matches: 83, Mismatches: 7, Indels: 23
0.73 0.06 0.20
Matches are distributed among these distances:
38 11 0.13
39 11 0.13
40 23 0.28
41 17 0.20
42 10 0.12
44 7 0.08
45 1 0.01
46 3 0.04
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (38 bp):
ATTATAAAATTAAAAATAAAAATTAAAAAATTATAAAT
Found at i:3915867 original size:22 final size:24
Alignment explanation
Indices: 3915842--3915891 Score: 77
Period size: 22 Copynumber: 2.2 Consensus size: 24
3915832 AAAAATTCAA
*
3915842 AAAATTATAAATA-TTATAAAA-T
1 AAAATTATAAAAATTTATAAAATT
3915864 AAAATTATAAAAATTTATAAAATT
1 AAAATTATAAAAATTTATAAAATT
3915888 AAAA
1 AAAA
3915892 ATAAATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 12 0.48
23 8 0.32
24 5 0.20
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (24 bp):
AAAATTATAAAAATTTATAAAATT
Found at i:3915927 original size:90 final size:86
Alignment explanation
Indices: 3915827--3915990 Score: 233
Period size: 85 Copynumber: 1.9 Consensus size: 86
3915817 TAAAAATTGA
*
3915827 AAAATAAAAATTCA-AAAAATTATAAATATTATAAAATAAAATTATAAAAATTTATAAAATTAAA
1 AAAATAAAAATT-ATAAAAATTATAAA-A-TAT---ATAAAATTATAAAAATTTATAAAATAAAA
3915891 AAT-AAATTATAAAACTTCAGAAAATG
60 AATAAAATTATAAAACTTCAGAAAATG
*
3915917 AAAATAAAAATTATAAAAATTATAAAATCTATAAAATTATAAAAATTTATAAAATAAAAAATAAA
1 AAAATAAAAATTATAAAAATTATAAAATATATAAAATTATAAAAATTTATAAAATAAAAAATAAA
*
3915982 ATTTTAAAA
66 ATTATAAAA
3915991 TTATTAAAAA
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
85 31 0.45
86 10 0.14
88 2 0.03
89 2 0.03
90 24 0.35
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.30
Consensus pattern (86 bp):
AAAATAAAAATTATAAAAATTATAAAATATATAAAATTATAAAAATTTATAAAATAAAAAATAAA
ATTATAAAACTTCAGAAAATG
Found at i:3915952 original size:27 final size:27
Alignment explanation
Indices: 3915862--3915971 Score: 98
Period size: 29 Copynumber: 3.9 Consensus size: 27
3915852 ATATTATAAA
3915862 ATAAAATTATAAAAATTTATAAAAT-T
1 ATAAAATTATAAAAATTTATAAAATCT
* * * * **
3915888 AAAAATAAATTATAAAACTTCAGAAAATGAAA
1 --ATA-AAATTATAAAAATTTATAAAAT--CT
3915920 ATAAAAATTATAAAAA-TTATAAAATCT
1 AT-AAAATTATAAAAATTTATAAAATCT
3915947 ATAAAATTATAAAAATTTATAAAAT
1 ATAAAATTATAAAAATTTATAAAAT
3915972 AAAAAATAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
26 13 0.20
27 11 0.17
28 2 0.03
29 26 0.40
30 12 0.18
31 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.32
Consensus pattern (27 bp):
ATAAAATTATAAAAATTTATAAAATCT
Found at i:3915981 original size:39 final size:39
Alignment explanation
Indices: 3915862--3916019 Score: 124
Period size: 39 Copynumber: 3.9 Consensus size: 39
3915852 ATATTATAAA
* *
3915862 ATAAAATTA-TAAAAATTTATAAAATTAAAAAT-AAATT
1 ATAAAATTATTAAAAATATATAAAATAAAAAATAAAATT
** * *
3915899 ATAAAACTTCAGAAAATGAAAATAAAAATTATAAAAATTATAAAATCT
1 ATAAAA-TT-ATTAAA--AATATATAAA--ATAAAAA--ATAAAAT-T
*
3915947 ATAAAATTA-TAAAAATTTATAAAATAAAAAATAAAATT
1 ATAAAATTATTAAAAATATATAAAATAAAAAATAAAATT
* *
3915985 TTAAAATTATTAAAAATATGTAAAATTAAAAAATA
1 ATAAAATTATTAAAAATATATAAAA-TAAAAAATA
3916020 TATAAAAAAT
Statistics
Matches: 96, Mismatches: 12, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
37 6 0.06
38 11 0.11
39 21 0.22
40 12 0.12
41 7 0.07
42 7 0.07
43 7 0.07
44 6 0.06
45 3 0.03
46 3 0.03
47 6 0.06
48 7 0.07
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (39 bp):
ATAAAATTATTAAAAATATATAAAATAAAAAATAAAATT
Found at i:3915983 original size:56 final size:54
Alignment explanation
Indices: 3915810--3916081 Score: 191
Period size: 56 Copynumber: 4.8 Consensus size: 54
3915800 GGAAAACCAA
*
3915810 AAAATTATAAAAATTGA-AAAA-TA-AAAATTCAAAAAA-TTATAAATATTATAAAAT
1 AAAATTATAAAAATT-ATAAAATTATAAAATT-AAAAAATTTATAAA-A-TAAAAAAT
* * * * *
3915864 AAAATTATAAAAATTTATAAAATTAAAAATAAATTATAAAACTTCAGAAAAT-GAAAAT
1 AAAATTATAAAAA-TTATAAAATT--ATA-AAATTA-AAAAATTTATAAAATAAAAAAT
3915922 AAAAATTATAAAAATTATAAAATCTATAAAATTATAAAAATTTATAAAATAAAAAAT
1 -AAAATTATAAAAATTATAAAAT-TATAAAATTA-AAAAATTTATAAAATAAAAAAT
* * * *
3915979 AAAATT-TTAAAATTATTAAAAATATGTAAAATTAAAAAATATATAAAAAATAAAAAT
1 AAAATTATAAAAATTA-T-AAAAT-TATAAAATTAAAAAATTTATAAAATA-AAAAAT
* ** *
3916036 -AAATTTTTGAAATTATAAAAAATTATTAAATTCAAAAAA-TTATAAA
1 AAAATTATAAAAATTAT--AAAATTATAAAATT-AAAAAATTTATAAA
3916082 GTTTTTACAA
Statistics
Matches: 182, Mismatches: 18, Indels: 34
0.78 0.08 0.15
Matches are distributed among these distances:
54 14 0.08
55 14 0.08
56 60 0.33
57 47 0.26
58 15 0.08
59 17 0.09
60 10 0.05
61 5 0.03
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (54 bp):
AAAATTATAAAAATTATAAAATTATAAAATTAAAAAATTTATAAAATAAAAAAT
Found at i:3916009 original size:57 final size:55
Alignment explanation
Indices: 3915917--3916081 Score: 167
Period size: 57 Copynumber: 2.9 Consensus size: 55
3915907 TCAGAAAATG
* *
3915917 AAAATAAAAATTATAAAA--ATTATAAAATCTATAAAATTATAAAAATTTATAAAATAA
1 AAAAT-AAAATTTTAAAATTATTA-AAAATAT-TAAAATTA-AAAAATTTATAAAATAA
* *
3915974 AAAATAAAATTTTAAAATTATTAAAAATATGTAAAATTAAAAAATATATAAAAAATA
1 AAAATAAAATTTTAAAATTATTAAAAATAT-TAAAATTAAAAAATTTATAAAATA-A
* * *
3916031 AAAATAAATTTTTGAAATTATAAAAAATTATT-AAATTCAAAAAA-TTATAAA
1 AAAATAAAATTTTAAAATTATTAAAAA-TATTAAAATT-AAAAAATTTATAAA
3916082 GTTTTTACAA
Statistics
Matches: 94, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
56 36 0.38
57 51 0.54
58 7 0.07
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (55 bp):
AAAATAAAATTTTAAAATTATTAAAAATATTAAAATTAAAAAATTTATAAAATAA
Found at i:3916018 original size:47 final size:49
Alignment explanation
Indices: 3915917--3916035 Score: 118
Period size: 47 Copynumber: 2.4 Consensus size: 49
3915907 TCAGAAAATG
* *
3915917 AAAATAAAAATTATAAAAATTATAAAATCTATAAAATTATAAAAATTTAT
1 AAAATAAAAA-TATAAAAATTATAAAATCTATAAAAATATAAAAATTTAA
* * *
3915967 AAAATAAAAA-AT-AAAATTTTAAAAT-TATTAAAAATATGTAAAATTAAA
1 AAAATAAAAATATAAAAATTATAAAATCTA-TAAAAATAT-AAAAATTTAA
*
3916015 AAATATATAAAAAATAAAAAT
1 AAA-ATA-AAAATATAAAAAT
3916036 AAATTTTTGA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
46 2 0.03
47 20 0.34
48 12 0.21
49 3 0.05
50 14 0.24
51 2 0.03
52 5 0.09
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (49 bp):
AAAATAAAAATATAAAAATTATAAAATCTATAAAAATATAAAAATTTAA
Found at i:3916027 original size:18 final size:17
Alignment explanation
Indices: 3915862--3916026 Score: 97
Period size: 17 Copynumber: 9.4 Consensus size: 17
3915852 ATATTATAAA
*
3915862 ATAAAATTATAAAAATTT
1 ATAAAATTA-AAAAATAT
*
3915880 ATAAAATTAAAAATAAATT
1 ATAAAATTAAAAA-ATA-T
* *
3915899 ATAAAACTTCAGAAA-AT
1 ATAAAA-TTAAAAAATAT
* *
3915916 -GAAAA-TAAAAATTAT
1 ATAAAATTAAAAAATAT
* *
3915931 A-AAAATTATAAAATCT
1 ATAAAATTAAAAAATAT
*
3915947 ATAAAATTATAAAAATTT
1 ATAAAATTA-AAAAATAT
3915965 ATAAAA-TAAAAAATAAAATT
1 ATAAAATTAAAAAAT---A-T
*
3915985 TTAAAATTATTAAAAATAT
1 ATAAAATTA--AAAAATAT
*
3916004 GTAAAATTAAAAAATAT
1 ATAAAATTAAAAAATAT
3916021 ATAAAA
1 ATAAAA
3916027 AATAAAAATA
Statistics
Matches: 115, Mismatches: 17, Indels: 31
0.71 0.10 0.19
Matches are distributed among these distances:
14 4 0.03
15 6 0.05
16 18 0.16
17 27 0.23
18 23 0.20
19 17 0.15
20 12 0.10
21 2 0.02
23 6 0.05
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (17 bp):
ATAAAATTAAAAAATAT
Found at i:3916133 original size:17 final size:17
Alignment explanation
Indices: 3916094--3916133 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
3916084 TTTTACAAAC
*
3916094 TTTTAATTTTATGAATT
1 TTTTATTTTTATGAATT
3916111 TTTTATTTTTCAT-AATT
1 TTTTATTTTT-ATGAATT
3916128 TTTTAT
1 TTTTAT
3916134 AATTTTATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTATTTTTATGAATT
Found at i:3916200 original size:27 final size:27
Alignment explanation
Indices: 3916168--3916230 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
3916158 TTAATTTTTA
3916168 TTTTTATTATCTTAAAATTTTATAGAT
1 TTTTTATTATCTTAAAATTTTATAGAT
* *
3916195 TTTTTATTATTTTCAAATTTTATAGAT
1 TTTTTATTATCTTAAAATTTTATAGAT
3916222 TTTTT-TTAT
1 TTTTTATTAT
3916231 AATTCTCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (27 bp):
TTTTTATTATCTTAAAATTTTATAGAT
Found at i:3917031 original size:45 final size:44
Alignment explanation
Indices: 3916908--3917048 Score: 119
Period size: 45 Copynumber: 3.1 Consensus size: 44
3916898 TTTAAAAAAG
*
3916908 TTAACATTAATAAATTAAAATATTAATTACTTTTTTAAAATAAAA--AA
1 TTAA-ATTAATAAA-TAATATATTAATTA-TTTTTT--AATAAAATTAA
*** * *
3916955 TTAAATTAA-AAAGGGTTTATTATTATAATTTTTTAATAAAATTAA
1 TTAAATTAATAAATAATATATTA--ATTATTTTTTAATAAAATTAA
3917000 TTAAAGTTAATAAATAATATATTAATTATTTTTT-ATAAAATTAA
1 TTAAA-TTAATAAATAATATATTAATTATTTTTTAATAAAATTAA
*
3917044 ATAAA
1 TTAAA
3917049 ATATTTAATT
Statistics
Matches: 76, Mismatches: 12, Indels: 15
0.74 0.12 0.15
Matches are distributed among these distances:
43 7 0.09
44 19 0.25
45 25 0.33
46 12 0.16
47 13 0.17
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (44 bp):
TTAAATTAATAAATAATATATTAATTATTTTTTAATAAAATTAA
Found at i:3917072 original size:32 final size:31
Alignment explanation
Indices: 3917010--3917072 Score: 72
Period size: 32 Copynumber: 2.0 Consensus size: 31
3917000 TTAAAGTTAA
* ** * *
3917010 TAAATAATATATTAATTATTTTTTATAAAAT
1 TAAATAAAATATTAATTAAATTTAAAAAAAT
3917041 TAAATAAAATATTTAATTAAATTTAAAAAAAT
1 TAAATAAAATA-TTAATTAAATTTAAAAAAAT
3917073 CAAGGTATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (31 bp):
TAAATAAAATATTAATTAAATTTAAAAAAAT
Found at i:3917367 original size:11 final size:11
Alignment explanation
Indices: 3917351--3917387 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
3917341 TTATTACTTT
3917351 TTATTTATAAA
1 TTATTTATAAA
* *
3917362 TTATTTTTAAT
1 TTATTTATAAA
3917373 TTATTTATAAA
1 TTATTTATAAA
3917384 TTAT
1 TTAT
3917388 ACAAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTATTTATAAA
Found at i:3921337 original size:92 final size:92
Alignment explanation
Indices: 3921218--3921394 Score: 234
Period size: 92 Copynumber: 1.9 Consensus size: 92
3921208 ATTGTGATAT
* * *
3921218 TTATAATCAATAAACTTTTCAGCTTTTTTA-TAAAAAAGAATCTGATTCTCAAATATAATTTATG
1 TTATAATCAATAAACTTTTCAGCTTTTTTACCAAAAAA-AATCTGATTCTCAAATACAATTCATG
*
3921282 CATTAGTCTAATCTTTTGCAGTGTCATAC
65 CATTAGTCTAAT-TCTTGCAGTGTCATAC
** * *
3921311 TTATAATCAACT-AACTTTTC-TTTTTTTTACCAAAAAAAATTTGATTCTCATATACAATTCATG
1 TTATAATCAA-TAAACTTTTCAGCTTTTTTACCAAAAAAAATCTGATTCTCAAATACAATTCATG
3921374 CATTAGTCTAATTCTTGCAGT
65 CATTAGTCTAATTCTTGCAGT
3921395 CTTTCTTTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
91 8 0.11
92 41 0.55
93 24 0.32
94 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.43
Consensus pattern (92 bp):
TTATAATCAATAAACTTTTCAGCTTTTTTACCAAAAAAAATCTGATTCTCAAATACAATTCATGC
ATTAGTCTAATTCTTGCAGTGTCATAC
Found at i:3921715 original size:88 final size:89
Alignment explanation
Indices: 3921411--3921944 Score: 558
Period size: 88 Copynumber: 5.9 Consensus size: 89
3921401 TTTTTCCTAT
* * * *
3921411 AAAAAGAATCCGATTTTCAGATATAATTTAA-GCATTAGTCTAATCCTTGCAATCT-ACATTTAC
1 AAAAAAAATCTGATTCTCAGATATAA-TTAATGCATTAGTCTAATCCTTGCAGTCTGACATTTAC
* * *
3921474 AATCAATC-AGTCTTTTTTTCTATA
65 AATCAATCAACTTTTTTTTTATATA
* * ** * *
3921498 AAAAAAATTC-GATTTTCAGATATAATTTGTGCATTAGTCTAATCCTTACAGTCTGACATTTATA
1 AAAAAAAATCTGATTCTCAGATATAATTAATGCATTAGTCTAATCCTTGCAGTCTGACATTTACA
* * *
3921562 ATCAATCAGTCTTTTTTTTTTTCCAGA
66 ATCAATCA-ACTTTTTTTTTAT--ATA
* * * *
3921589 AAAAAAAATATGATTCTCAGATATAATTCATGCGTTAGTCTAATCCTTGCAGTCTAACATTTACA
1 AAAAAAAATCTGATTCTCAGATATAATTAATGCATTAGTCTAATCCTTGCAGTCTGACATTTACA
*
3921654 ATCAGTCAACTTTTTTTTTATA-A
66 ATCAATCAACTTTTTTTTTATATA
* ** * *
3921677 AAAAAAAATCTGATTCTCAGATACAATTAATGCATTAGTCTAATCCTTATAATCTGACATTTATA
1 AAAAAAAATCTGATTCTCAGATATAATTAATGCATTAGTCTAATCCTTGCAGTCTGACATTTACA
* *
3921742 ATCAGTCAACTTTTCTTTTTTTTTTATA
66 ATCAATCAAC---T-TTTTTTTTATATA
* * * *
3921770 AAAAAGAATCTGATTCTCAGATATAATTAATGGATTAGTCTAATCCTTGCAGTTTGATATTTACA
1 AAAAAAAATCTGATTCTCAGATATAATTAATGCATTAGTCTAATCCTTGCAGTCTGACATTTACA
* *
3921835 ATCAACCAACTTTTCTTTTTTCTATA
66 ATCAATCAAC-TTT-TTTTTTATATA
** * * * *
3921861 AAAAGGAAT-TAATTCTTAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTAACATTTACA
1 AAAAAAAATCTGATTCTCAGATATAATTAATGCATTAGTCTAATCCTTGCAGTCTGACATTTACA
*
3921925 ATCAATTAACTTTTCTTTTT
66 ATCAATCAACTTTT-TTTTT
3921945 TCCATAAAAA
Statistics
Matches: 377, Mismatches: 56, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
85 2 0.01
86 37 0.10
87 23 0.06
88 68 0.18
89 18 0.05
90 58 0.15
91 42 0.11
92 64 0.17
93 65 0.17
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.41
Consensus pattern (89 bp):
AAAAAAAATCTGATTCTCAGATATAATTAATGCATTAGTCTAATCCTTGCAGTCTGACATTTACA
ATCAATCAACTTTTTTTTTATATA
Found at i:3921903 original size:271 final size:267
Alignment explanation
Indices: 3921411--3921944 Score: 682
Period size: 271 Copynumber: 2.0 Consensus size: 267
3921401 TTTTTCCTAT
* * * *
3921411 AAAAAGAATCCGATTTTCAGATATAATTTAAGCATTAGTCTAATCCTTGCAATCTACATTTACAA
1 AAAAAAAATCCGATTCTCAGATACAATTTAAGCATTAGTCTAATCCTTACAATCTACATTTACAA
* **
3921476 TCAATCAGTCTTTTTTTCTATAAAAAAAATTCGATTTTCAGATATAATTTGTGCATTAGTCTAAT
66 TCAATCAGTCTTTTTTTCTATAAAAAAAATTCGATTCTCAGATATAATTAATGCATTAGTCTAAT
* * * * *
3921541 CCTTACAGTCTGACATTTATAATCAATCAGTCTTTTTTTTTTTCCAGAAAAAAAAATATGATTCT
131 CCTTACAGTCTGACATTTACAATCAACCAGACTTTTCTTTTTTCCAGAAAAAAAAATATAATTCT
* *
3921606 CAGATATAATTCATGCGTTAGTCTAATCCTTGCAGTCTAACATTTACAATCAGTCAACTTTT-TT
196 CAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTAACATTTACAATCAATCAACTTTTCTT
3921670 TTTATAA
261 TTTATAA
* * *
3921677 AAAAAAAATCTGATTCTCAGATACAA-TTAATGCATTAGTCTAATCCTTATAATCTGACATTTAT
1 AAAAAAAATCCGATTCTCAGATACAATTTAA-GCATTAGTCTAATCCTTACAATCT-ACATTTAC
* * * *
3921741 AATCAGTCAACTTTTCTTTTTTTTTTATAAAAAAGAA-TCTGATTCTCAGATATAATTAATGGAT
64 AATCAATC-A---GTC-TTTTTTTCTATAAAAAA-AATTC-GATTCTCAGATATAATTAATGCAT
* * * * * **
3921805 TAGTCTAATCCTTGCAGTTTGATATTTACAATCAACCA-ACTTTTCTTTTTTCTATAAAAAGGAA
122 TAGTCTAATCCTTACAGTCTGACATTTACAATCAACCAGACTTTTCTTTTTTCCAGAAAAAAAAA
* *
3921869 T-TAATTCTTAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTAACATTTACAATCAATTA
187 TATAATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTAACATTTACAATCAATCA
3921933 ACTTTTCTTTTT
252 ACTTTTCTTTTT
3921945 TCCATAAAAA
Statistics
Matches: 228, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
265 4 0.02
266 44 0.19
267 14 0.06
268 1 0.00
271 66 0.29
272 44 0.19
273 55 0.24
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.41
Consensus pattern (267 bp):
AAAAAAAATCCGATTCTCAGATACAATTTAAGCATTAGTCTAATCCTTACAATCTACATTTACAA
TCAATCAGTCTTTTTTTCTATAAAAAAAATTCGATTCTCAGATATAATTAATGCATTAGTCTAAT
CCTTACAGTCTGACATTTACAATCAACCAGACTTTTCTTTTTTCCAGAAAAAAAAATATAATTCT
CAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTAACATTTACAATCAATCAACTTTTCTT
TTTATAA
Done.