genome.fa.s1271.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1271
Parameters: 2 7 7 80 10 50 1000
Length:  52245

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044--2728	29	58.5	29	85	4	2081	28	30	17	24	1.97
3303--3377	20	3.8	20	76	0	87	33	12	12	42	1.79
9568--9954	210	1.9	208	89	1	612	30	15	16	37	1.90
10951--10986	17	2.1	18	94	5	65	11	38	5	44	1.63
13488--13533	22	2.0	22	87	4	65	43	6	0	50	1.28
14324--14367	23	1.9	23	90	0	70	45	0	2	52	1.13
15320--15369	6	8.5	6	81	14	52	24	2	2	72	1.06
15317--15369	11	4.6	11	78	15	54	26	1	1	69	1.09
15891--15929	20	1.9	21	89	5	62	35	7	0	56	1.28
18944--18995	16	3.3	15	81	10	59	57	5	5	30	1.46
18944--18978	17	2.1	16	89	5	52	60	5	8	25	1.49
22132--22161	3	10.0	3	100	0	60	0	33	0	66	0.92
22659--22770	5	23.6	5	77	15	114	58	0	0	40	1.04
22705--22771	14	5.1	14	80	10	79	59	0	0	40	0.97
22659--22770	19	5.7	19	94	4	179	58	0	0	40	1.04
22804--22859	16	3.4	16	73	22	53	48	1	1	48	1.22
23391--23487	37	2.6	36	77	9	106	54	0	5	40	1.23
23485--23513	12	2.3	13	94	5	51	72	0	0	27	0.85
23606--23679	22	3.2	21	78	14	58	45	2	1	50	1.24
23917--23953	2	18.5	2	100	0	74	51	0	0	48	1.00
24379--24442	32	2.0	32	90	0	101	37	23	12	26	1.90
26470--26572	13	7.0	13	75	23	89	36	14	17	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26495--26558	19	3.7	19	76	23	86	37	12	18	31	1.88
26482--26571	32	2.8	32	98	0	171	36	14	17	31	1.90
28898--29026	51	2.5	51	75	9	127	31	22	12	34	1.91
29040--29162	52	2.4	52	78	9	144	29	27	11	31	1.91
28922--29193	131	2.1	132	88	2	404	29	26	11	32	1.91
29175--29379	79	2.6	79	85	1	259	23	30	17	28	1.97
41781--41823	9	4.6	9	85	5	50	83	9	6	0	0.80
43007--43093	28	3.1	28	65	12	79	26	24	20	28	1.99
42825--43565	55	13.0	55	81	11	787	26	27	20	25	1.99
42825--43565	171	4.3	172	88	4	977	26	27	20	25	1.99
43346--43436	29	3.2	29	62	14	73	27	29	18	24	1.98
44356--44452	19	5.8	18	72	27	88	35	14	18	31	1.91
44376--44465	13	6.0	13	71	26	63	35	16	17	30	1.93
44357--44464	32	3.4	32	96	0	189	34	15	18	31	1.92
46879--47001	51	2.4	52	86	8	171	32	25	11	30	1.91
46879--47001	53	2.4	51	86	8	169	32	25	11	30	1.91
47011--47136	52	2.4	52	79	7	148	28	27	11	31	1.92
46881--47161	131	2.1	133	91	4	455	29	26	12	31	1.92
47115--47192	28	2.8	28	82	7	88	23	35	19	21	1.96
47146--47350	79	2.6	79	80	3	216	22	31	17	27	1.97
48437--48490	20	2.7	19	88	11	74	33	12	18	35	1.89
50705--50756	19	2.6	21	90	6	81	38	13	15	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50788--50813	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1

The End!