genome.fa.s1272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1272
Parameters: 2 7 7 80 10 50 1000
Length:  71746

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3250--3505	79	3.2	79	83	5	320	30	15	26	27	1.96
3204--3505	158	1.9	160	83	4	394	32	14	25	27	1.95
3437--3556	51	2.4	51	92	0	204	32	13	25	29	1.93
3358--3634	130	2.1	130	93	0	482	33	14	24	27	1.94
3281--3711	209	2.1	209	88	3	636	33	13	24	28	1.93
3488--3908	79	5.4	79	88	2	634	33	13	25	27	1.94
3150--3791	287	2.2	290	84	3	812	34	13	24	27	1.93
3488--3908	157	2.7	157	91	2	686	33	13	25	27	1.94
5306--5411	35	3.1	35	95	1	196	19	33	5	40	1.75
5312--5432	21	6.5	20	70	24	86	19	30	5	43	1.75
5347--5466	55	2.2	56	96	1	224	20	30	5	44	1.75
5402--5489	35	2.5	35	96	0	158	20	28	5	45	1.74
5312--5491	90	2.0	90	96	0	333	20	29	5	44	1.74
5505--5550	6	7.7	6	95	0	83	32	0	0	67	0.91
6734--6759	13	2.0	13	100	0	52	30	7	15	46	1.74
11236--11271	3	12.0	3	87	0	54	27	33	2	36	1.72
13397--13459	25	2.5	25	79	7	65	3	22	0	74	0.96
13400--13446	16	2.9	15	84	12	58	4	17	0	78	0.90
13831--13882	23	2.3	23	86	0	68	46	13	15	25	1.82
14725--14765	16	2.6	16	88	0	64	56	29	2	12	1.49
22854--22891	2	19.0	2	100	0	76	0	50	0	50	1.00
22891--22923	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25233--25292	3	20.0	3	100	0	120	33	0	0	66	0.92
26435--26469	13	2.5	15	86	13	56	42	8	0	48	1.33
26424--26468	13	3.2	13	82	17	54	40	8	0	51	1.33
26542--26580	19	2.1	19	85	9	53	17	5	7	69	1.32
27700--28029	165	2.0	162	85	5	445	47	14	6	31	1.70
28271--28445	70	2.4	74	80	4	214	55	13	1	29	1.48
28788--28828	21	2.0	21	85	9	57	29	0	0	70	0.87
28797--28958	75	2.2	71	84	11	213	37	2	1	59	1.19
28922--28960	19	2.0	19	90	5	60	38	2	0	58	1.12
29149--29177	3	9.7	3	100	0	58	34	0	0	65	0.93
29491--29580	47	1.9	47	95	0	162	25	7	2	64	1.32
30002--30187	16	11.6	16	72	5	115	12	13	30	43	1.81
30018--30153	32	4.2	32	78	7	150	13	14	30	41	1.85
30018--30185	32	5.2	32	76	5	142	12	13	30	42	1.82
30018--30187	64	2.7	64	88	0	232	12	14	30	42	1.83
31261--31337	16	4.8	16	72	13	61	23	16	19	40	1.91
31260--31332	32	2.3	33	80	7	96	24	17	17	39	1.91
31310--31344	16	2.2	16	89	0	52	28	17	14	40	1.88
43536--43560	2	12.5	2	100	0	50	48	0	0	52	1.00
44494--44560	28	2.4	28	80	9	75	53	4	2	38	1.36
44551--44596	18	2.6	19	90	10	71	67	0	2	30	1.03
44551--44589	19	2.2	17	90	9	60	69	0	2	28	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45946--45992	14	2.9	17	71	28	57	36	0	0	63	0.94
45946--46028	32	2.7	32	85	9	111	38	0	0	61	0.96
45961--45995	13	2.6	14	90	4	54	34	0	0	65	0.93
49892--49950	23	2.8	22	80	15	79	35	0	0	64	0.94
49892--49950	14	4.1	14	72	10	57	35	0	0	64	0.94
49892--49950	21	2.8	21	79	10	75	35	0	0	64	0.94
50013--50076	23	2.7	22	72	11	56	64	0	0	35	0.94
50595--50639	17	2.6	17	92	0	72	44	2	0	53	1.13
51209--51288	31	2.7	29	80	5	88	41	2	2	53	1.27
51214--51347	36	4.0	35	75	11	111	44	1	1	52	1.19
51262--51347	11	7.5	11	73	17	59	46	1	0	52	1.08
51252--51356	24	4.4	25	75	16	98	45	1	0	51	1.18
51463--51516	24	2.2	25	83	9	67	42	3	0	53	1.18
51967--52006	20	2.0	20	85	9	55	52	0	0	47	1.00
54624--55052	154	2.8	154	73	11	385	41	16	15	27	1.88
56809--56839	11	2.7	12	95	5	55	70	0	0	29	0.87
56809--56839	6	5.3	6	92	7	55	70	0	0	29	0.87
58668--58740	29	2.5	29	80	6	85	42	9	24	23	1.84
58922--59002	33	2.5	33	75	0	90	45	16	19	18	1.85
59034--59153	41	2.9	41	92	0	186	47	10	24	18	1.79
59562--59586	12	2.1	12	100	0	50	32	8	32	28	1.86
60059--60154	48	2.0	48	87	4	140	48	6	23	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60137--60498	76	4.8	76	78	8	335	42	15	15	26	1.87
60003--60229	124	1.8	123	81	3	278	44	9	23	23	1.82
60133--60498	152	2.4	153	82	4	420	42	15	15	26	1.86
63660--63684	13	1.9	13	100	0	50	36	16	16	32	1.90
63725--63791	33	2.0	33	88	0	98	40	14	11	32	1.83
63747--63771	13	1.9	13	100	0	50	32	16	16	36	1.90
64643--64832	52	3.8	51	77	14	218	29	20	27	22	1.99
64644--64831	95	2.0	95	91	4	308	28	20	27	22	1.99
64854--64945	28	3.2	28	80	10	100	19	16	27	36	1.93
65107--65156	1	50.0	1	83	0	55	90	8	2	0	0.54
65103--65163	9	6.7	9	80	19	65	86	11	1	0	0.63
65099--65161	20	3.2	19	86	4	81	84	14	1	0	0.71
65099--65153	20	2.7	20	91	2	83	85	12	1	0	0.68
65159--65187	3	9.7	3	100	0	58	68	31	0	0	0.89
66603--66822	29	7.7	29	76	10	177	23	31	18	25	1.97
66863--66960	31	3.3	30	84	5	137	32	27	15	24	1.95

Tables:   1

The End!