Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1275
Parameters: 2 7 7 80 10 50 1000
Length:  47612

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1204--1317
49
2.3
49
95
0
201
40
15
18
25
1.90
1225--1316
29
3.5
28
72
25
101
39
17
18
25
1.92
4446--4830
153
2.5
153
77
2
387
39
18
16
25
1.91
6422--6463
10
3.7
11
85
14
59
0
23
0
76
0.79
6427--6451
13
1.9
13
100
0
50
0
28
0
72
0.86
6418--6456
15
2.5
15
83
4
51
0
23
0
76
0.78
6422--6465
24
1.9
22
90
9
70
0
25
0
75
0.81
6424--6465
11
3.6
11
79
20
50
0
23
0
76
0.79
6871--6908
20
1.9
20
88
0
58
7
15
36
39
1.77
7097--7299
64
3.2
63
85
6
284
8
15
12
63
1.52
10188--10438
85
3.0
85
82
5
285
46
13
19
21
1.83
10467--10891
44
9.8
44
74
8
194
42
17
20
19
1.89
10548--11000
44
10.4
44
74
7
264
43
15
21
19
1.88
10548--11000
88
5.2
87
76
4
351
43
15
21
19
1.88
24374--24883
142
3.6
141
86
2
614
43
10
10
34
1.74
25066--25120
30
1.9
30
82
10
71
25
18
7
49
1.73
26248--26957
334
2.1
332
83
7
900
50
8
8
33
1.61
26268--26957
171
4.1
169
85
5
818
50
8
8
33
1.61
32151--32188
11
3.4
11
92
3
58
73
0
23
2
0.95
34105--34145
22
2.0
22
90
9
68
34
9
12
43
1.75
34349--34714
129
2.8
126
86
4
489
33
11
13
40
1.81
35493--35566
20
3.8
19
75
12
69
35
13
16
35
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38396--38421
13
2.0
13
100
0
52
38
15
15
30
1.88
38378--38441
32
2.0
33
87
3
94
40
17
14
28
1.88
40052--40096
21
2.1
21
84
8
56
53
4
20
22
1.63
41897--41927
15
2.1
15
93
0
53
48
16
22
12
1.80
44015--44040
13
2.0
13
100
0
52
30
15
15
38
1.88
44159--44205
21
2.3
20
82
10
60
31
19
4
44
1.70
46572--46597
13
2.0
13
100
0
52
38
15
15
30
1.88
46554--46617
32
2.0
33
87
3
94
40
17
14
28
1.88

Tables:   1

The End!