Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1277
Parameters: 2 7 7 80 10 50 1000
Length:  28204

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
924--980
30
1.9
30
96
0
105
40
10
17
31
1.84
3159--3199
19
2.2
19
86
8
57
53
0
0
46
1.00
3232--3289
17
3.3
17
78
7
53
58
0
1
39
1.08
3193--3273
22
3.7
23
73
21
84
56
0
0
43
0.99
3610--3686
39
1.9
41
86
5
113
45
1
0
53
1.08
3656--3719
32
2.0
33
87
9
96
46
0
1
51
1.10
3611--3729
39
3.0
41
80
11
99
44
0
0
53
1.12
3651--3715
16
4.1
15
74
20
53
47
0
1
50
1.10
5149--5189
22
2.0
22
90
9
68
46
0
0
53
1.00
5150--5196
21
2.3
20
85
10
60
53
0
0
46
1.00
5736--5782
12
4.3
11
84
15
62
80
0
2
17
0.80
5744--5787
10
4.5
10
83
13
56
77
0
0
22
0.77
5901--5953
25
2.1
25
85
3
70
50
1
0
47
1.12
12176--12205
8
3.9
8
91
8
53
13
0
0
86
0.57
12176--12206
15
2.1
15
100
0
62
16
0
0
83
0.64
12179--12212
15
2.3
15
89
0
50
14
2
0
82
0.79
12507--12536
2
15.0
2
100
0
60
0
50
0
50
1.00
13752--13836
42
2.0
42
86
4
118
30
14
20
35
1.92
14076--14114
18
2.2
18
90
0
60
56
0
2
41
1.13
15113--15156
21
2.2
20
87
4
61
45
0
2
52
1.13
15594--15641
17
2.6
19
80
12
64
64
0
2
33
1.05
15678--15726
26
1.9
25
87
4
71
57
0
0
42
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15677--15737
26
2.3
26
77
5
70
52
0
1
45
1.10
16137--16211
35
2.2
35
83
11
93
58
0
0
41
0.98
16159--16221
20
3.0
21
84
13
69
61
0
1
36
1.05
16496--16534
2
19.5
2
100
0
78
51
0
0
48
1.00
16765--16808
18
2.4
19
77
14
56
34
0
0
65
0.93
16833--16884
21
2.5
22
72
12
56
34
0
5
59
1.21
16942--16982
20
2.0
20
95
0
73
58
0
0
41
0.98
16947--16996
20
2.5
20
83
6
66
60
0
0
40
0.97
17953--18013
28
2.3
26
86
10
81
39
0
0
60
0.97
17996--18037
22
1.9
22
85
9
59
33
0
0
66
0.92
18985--19052
24
2.8
24
78
20
70
54
0
1
44
1.09
18976--19068
26
4.0
24
76
15
79
54
1
1
43
1.14
18990--19071
26
3.3
25
80
11
80
53
1
1
43
1.16
20122--20151
6
5.0
6
91
0
51
20
16
30
33
1.94
20401--20434
18
1.9
17
94
5
59
52
5
0
41
1.25
20465--20505
21
2.0
21
95
0
73
31
4
17
46
1.69
23839--23864
7
3.7
7
100
0
52
88
0
0
11
0.52
25486--25534
3
16.3
3
100
0
98
67
0
0
32
0.91

Tables:   1

The End!