Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1278
Parameters: 2 7 7 80 10 50 1000
Length:  27190

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1159--2827
29
58.9
29
78
11
1467
27
30
17
23
1.97
1158--2827
57
29.5
57
78
12
1470
27
30
17
23
1.97
1200--1470
28
10.0
24
76
15
98
29
28
17
23
1.97
2303--2826
28
18.4
30
72
16
165
26
31
18
24
1.97
4403--4456
23
2.4
21
76
11
54
24
16
9
50
1.74
9624--10010
209
1.9
209
88
2
598
30
15
16
37
1.90
11008--11043
17
2.1
18
94
5
65
11
38
5
44
1.63
13544--13589
22
2.0
22
87
4
65
43
6
0
50
1.28
15374--15428
6
9.2
6
79
16
53
25
1
1
70
1.06
15377--15410
17
1.9
18
94
5
61
23
2
2
70
1.15
15948--15986
20
1.9
21
89
5
62
35
7
0
56
1.28
18979--19029
16
3.3
15
83
8
66
56
5
5
31
1.47
18960--19029
16
4.5
15
76
7
59
51
7
7
34
1.57
22162--22191
3
10.0
3
100
0
60
0
33
0
66
0.92
22708--22784
19
4.1
19
98
1
147
57
0
0
42
0.99
22708--22777
5
14.8
5
82
11
94
57
0
0
42
0.99
22834--22876
17
2.5
17
80
3
50
46
0
2
51
1.13
22825--22878
16
3.4
16
72
23
51
48
1
1
48
1.23
23381--23442
26
2.4
25
80
20
67
58
0
3
38
1.15
23403--23499
37
2.6
36
77
9
106
54
0
5
40
1.23
23614--23687
22
3.2
21
78
14
58
45
2
1
50
1.24
23925--23956
2
16.5
2
93
6
57
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24378--24441
32
2.0
32
90
0
101
37
23
12
26
1.90
24898--24939
18
2.3
18
84
8
59
23
2
2
71
1.10
25412--25457
22
2.0
22
83
4
56
65
0
0
34
0.93
26434--26536
13
7.0
13
75
23
89
36
14
17
31
1.90
26459--26522
19
3.7
19
76
23
86
37
12
18
31
1.88
26446--26535
32
2.8
32
98
0
171
36
14
17
31
1.90

Tables:   1

The End!