Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold128
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1835488
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 1 of 11
Found at i:3273 original size:20 final size:20
Alignment explanation
Indices: 3248--3322 Score: 80
Period size: 20 Copynumber: 3.6 Consensus size: 20
3238 ATTTGCCTGC
*
3248 ATGTATTGATACAATTATAA
1 ATGTATCGATACAATTATAA
3268 ATGTATCGATACAATT-TGAA
1 ATGTATCGATACAATTAT-AA
* *
3288 GCATGTATCGATACATTTATTA
1 --ATGTATCGATACAATTATAA
*
3310 ATGTATCGGTACA
1 ATGTATCGATACA
3323 TGTCCTTGGC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
19 1 0.02
20 29 0.62
22 16 0.34
23 1 0.02
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTATAA
Found at i:3373 original size:19 final size:20
Alignment explanation
Indices: 3349--3402 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
3339 CAAGGTGATT
3349 TGTATCGATACAAAACT-TC
1 TGTATCGATACAAAACTGTC
** *
3368 TGTATCGATACATTTACTGTT
1 TGTATCGATACA-AAACTGTC
3389 TGTATCGATACAAA
1 TGTATCGATACAAA
3403 TTGTAGAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 12 0.43
20 3 0.11
21 13 0.46
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTATCGATACAAAACTGTC
Found at i:3394 original size:21 final size:19
Alignment explanation
Indices: 3347--3402 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
3337 TGCAAGGTGA
3347 TTTGTATCGATACAAAACT
1 TTTGTATCGATACAAAACT
* **
3366 TCTGTATCGATACATTTACT
1 TTTGTATCGATACA-AAACT
3386 GTTTGTATCGATACAAA
1 -TTTGTATCGATACAAA
3403 TTGTAGAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.39
Consensus pattern (19 bp):
TTTGTATCGATACAAAACT
Found at i:7134 original size:21 final size:22
Alignment explanation
Indices: 7104--7180 Score: 140
Period size: 21 Copynumber: 3.6 Consensus size: 22
7094 ACAGTGATCT
7104 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
7126 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
7147 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
7168 ATGAACAGTGATG
1 ATGAACAGTGATG
7181 AATAGTGATG
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
21 42 0.78
22 12 0.22
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:7187 original size:10 final size:10
Alignment explanation
Indices: 7168--7198 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7158 GTATCGATAC
7168 ATGAACAGTG
1 ATGAACAGTG
*
7178 ATGAATAGTG
1 ATGAACAGTG
7188 ATGAACAGTG
1 ATGAACAGTG
7198 A
1 A
7199 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:7198 original size:42 final size:42
Alignment explanation
Indices: 7070--7198 Score: 138
Period size: 42 Copynumber: 3.0 Consensus size: 42
7060 ATCGATACAC
* *
7070 TGTATCGATACGTGAACAGTG-TGAACAGTGATCTATGAACAGTGA
1 TGTATCGATACATGAACAGTGATGAATAGTG----ATGAACAGTGA
* * *
7115 TGTATCGATACATGAA-AGTGATGTATCGATACATGAA-AGTGA
1 TGTATCGATACATGAACAGTGATGAATAG-T-GATGAACAGTGA
7157 TGTATCGATACATGAACAGTGATGAATAGTGATGAACAGTGA
1 TGTATCGATACATGAACAGTGATGAATAGTGATGAACAGTGA
7199 AAATGAGATT
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
41 5 0.07
42 27 0.38
43 15 0.21
44 4 0.06
45 19 0.27
46 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (42 bp):
TGTATCGATACATGAACAGTGATGAATAGTGATGAACAGTGA
Found at i:7331 original size:52 final size:53
Alignment explanation
Indices: 7222--7357 Score: 202
Period size: 53 Copynumber: 2.6 Consensus size: 53
7212 CTACTTCCAA
*
7222 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTACCAATGACC
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTACCAATGACC
* * *
7275 TGTATCGATACATATTGTGTGTATCGATA-GAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTACCAATGACC
* *
7327 TGTATTGACACATATTTGTGTGTATCGATAC
1 TGTATCGATACATA-TTGTGTGTATCGATAC
7358 TATGCAATCT
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
52 32 0.43
53 43 0.57
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTACCAATGACC
Found at i:7390 original size:20 final size:20
Alignment explanation
Indices: 7345--7398 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
7335 CACATATTTG
*
7345 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATGAAA
* *
7365 TCTGTATCGATAC-ATTTAAA
1 TGTGTATCGATACTA-TGAAA
7385 TGTGTATCGATACT
1 TGTGTATCGATACT
7399 TTTCAGGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (20 bp):
TGTGTATCGATACTATGAAA
Found at i:7463 original size:21 final size:21
Alignment explanation
Indices: 7437--7477 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7427 GTCAACCTTG
7437 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
7458 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
7478 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:15128 original size:79 final size:79
Alignment explanation
Indices: 15045--15194 Score: 187
Period size: 79 Copynumber: 1.9 Consensus size: 79
15035 ATAAAATCAG
* *** * *
15045 GGTTGGAGTATTCCCTTGAAAATAACAGGG-TTGGAATGTCCCCGATTGTGAAAAATTGA-TGCT
1 GGTTGGAGTATCCCCGCAAAAATAAC-GGGATTGGAATATCCCCGATTATG-AAAATTGAGTGCT
15108 TTAGAAATAAGGCCGA
64 TTAGAAATAAGGCCGA
* * *
15124 GGTTGGAGTATCCCCGCAAAAATAACGGGATTGGAGTATCCCCGATTATGAAAATTTAGTGTTTT
1 GGTTGGAGTATCCCCGCAAAAATAACGGGATTGGAATATCCCCGATTATGAAAATTGAGTGCTTT
15189 AGAAAT
66 AGAAAT
15195 TAAATAGGGT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 10 0.17
79 50 0.83
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (79 bp):
GGTTGGAGTATCCCCGCAAAAATAACGGGATTGGAATATCCCCGATTATGAAAATTGAGTGCTTT
AGAAATAAGGCCGA
Found at i:15239 original size:50 final size:51
Alignment explanation
Indices: 15154--15267 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 51
15144 AATAACGGGA
* * * *
15154 TTGGAGTATCCCCGATTATGAAAATTTAGTGTTTTAGAAATTAAA-TA-GGG
1 TTGGAGTATCCCCGATTATGAAAATTCAATATTTTAGAAA-TAAAGCAGGGG
* *
15204 TTTGAGTATCCCCGATTGTGAGAAA-TCAATATTTTAGAAATAAAGCAGGGG
1 TTGGAGTATCCCCGATTATGA-AAATTCAATATTTTAGAAATAAAGCAGGGG
15255 TTGGAGTATCCCC
1 TTGGAGTATCCCC
15268 TCGGAAATAA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
49 4 0.07
50 32 0.59
51 18 0.33
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (51 bp):
TTGGAGTATCCCCGATTATGAAAATTCAATATTTTAGAAATAAAGCAGGGG
Found at i:15387 original size:131 final size:129
Alignment explanation
Indices: 15071--15475 Score: 531
Period size: 131 Copynumber: 3.1 Consensus size: 129
15061 TGAAAATAAC
* * * ** ** * *
15071 AGGGTTGGAATGTCCCCGATTGTGAAAAATTGATGCTTTAGAAATAAGGCCGAGGTTGGAGTATC
1 AGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATC
* * * * *
15136 CCCGCAAAAATAACGGGATTGGAGTATCCCCGATTATGAAAATTTAGTGTTTTAGAAATTAAAT
66 CCCTCGAAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAAT
* *
15200 AGGGTTTGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCAGGGGTTGGAGTATC
1 AGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATC
* *
15265 CCCTCGGAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAAT
66 CCCTCGAAAATAACGGGATTGGAGTATCCCCGATTATGAAAA-ATTGGTGTTTTAGAAATAAAAT
*
15330 TGAGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
1 AG-GGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
* * * * * **
15395 CCCTTTGAAAATAAGGGGATTGGAGTATCCCCGATTATGAAAAATTGATGCTTGGGAAATAAAAC
65 CCCCTCGAAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAA-
*
15460 C
129 T
*
15461 GGGGTTGGAGTATCC
1 AGGGTTGGAGTATCC
15476 TTGAGATGAA
Statistics
Matches: 241, Mismatches: 32, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
129 92 0.38
130 50 0.21
131 99 0.41
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (129 bp):
AGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATC
CCCTCGAAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAAT
Found at i:15391 original size:51 final size:52
Alignment explanation
Indices: 15278--15397 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 52
15268 TCGGAAATAA
* *** * *
15278 CGGGATTGGAGTATCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAGATCAATATTTTAGAAATAAAAC
* * * *
15330 TGAGGTTGGAGTATCCCCGATTGTGAGAA-ATCAATATTTTAGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAGATCAATATTTTAGAAATAAAAC
15381 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
15398 TTTGAAAATA
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
51 31 0.55
52 25 0.45
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (52 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAGATCAATATTTTAGAAATAAAAC
Found at i:21978 original size:13 final size:13
Alignment explanation
Indices: 21940--21980 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
21930 CCGTTGGGCT
21940 CAATGTATCGATA
1 CAATGTATCGATA
* *
21953 CAGTGTGTCGATA
1 CAATGTATCGATA
*
21966 CAATGTATTGATA
1 CAATGTATCGATA
21979 CA
1 CA
21981 TGAACAATGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:22157 original size:33 final size:32
Alignment explanation
Indices: 22099--22161 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
22089 ACAATTCATG
22099 ATGTATCGATACCAAGAACATGTATCGATATA
1 ATGTATCGATACCAAGAACATGTATCGATATA
* * *
22131 ATGTGTCGATACTAAGCAATATGTATCGATA
1 ATGTATCGATACCAAG-AACATGTATCGATA
22162 CATCTCGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (32 bp):
ATGTATCGATACCAAGAACATGTATCGATATA
Found at i:22303 original size:21 final size:21
Alignment explanation
Indices: 22263--22303 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
22253 CTTTTAGATT
22263 ATTTTTACTTGAAAACATATG
1 ATTTTTACTTGAAAACATATG
*
22284 ATTTATTAGTTGAAAA-ATAT
1 ATTT-TTACTTGAAAACATAT
22304 TTATAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (21 bp):
ATTTTTACTTGAAAACATATG
Found at i:23366 original size:20 final size:21
Alignment explanation
Indices: 23324--23368 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
23314 TGTAGAAAAT
23324 AGCAAGACAAACATTCATAAA
1 AGCAAGACAAACATTCATAAA
*
23345 AGCAA-ACATAAC-TTCATGAA
1 AGCAAGACA-AACATTCATAAA
23365 AGCA
1 AGCA
23369 TGAATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.53, C:0.20, G:0.11, T:0.16
Consensus pattern (21 bp):
AGCAAGACAAACATTCATAAA
Found at i:25354 original size:21 final size:21
Alignment explanation
Indices: 25312--25361 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
25302 ATGCAAATTT
**
25312 TTATTTTCATTAGTTAACTCA
1 TTATTTTCATTAGCCAACTCA
* *
25333 TTATTTTTATTAGCCAATTCA
1 TTATTTTCATTAGCCAACTCA
*
25354 TCATTTTC
1 TTATTTTC
25362 TAGTTGCAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.16, G:0.04, T:0.54
Consensus pattern (21 bp):
TTATTTTCATTAGCCAACTCA
Found at i:25403 original size:21 final size:21
Alignment explanation
Indices: 25372--25426 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
25362 TAGTTGCAAC
*
25372 TCATTTCTTTTCTCCTCTAAT
1 TCATTTATTTTCTCCTCTAAT
* **
25393 TTATTTATTTTCTTTTCTAAT
1 TCATTTATTTTCTCCTCTAAT
*
25414 TCATTTAATTTCT
1 TCATTTATTTTCT
25427 TTTTAAGAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (21 bp):
TCATTTATTTTCTCCTCTAAT
Found at i:25427 original size:21 final size:21
Alignment explanation
Indices: 25387--25429 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
25377 TCTTTTCTCC
* *
25387 TCTAATTTATTTATTTTCTTT
1 TCTAATTCATTTAATTTCTTT
25408 TCTAATTCATTTAATTTCTTT
1 TCTAATTCATTTAATTTCTTT
25429 T
1 T
25430 TAAGAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (21 bp):
TCTAATTCATTTAATTTCTTT
Found at i:27526 original size:13 final size:13
Alignment explanation
Indices: 27508--27533 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27498 ACTATTCATA
27508 TGTATCGATACAT
1 TGTATCGATACAT
27521 TGTATCGATACAT
1 TGTATCGATACAT
27534 GAACAATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:27560 original size:24 final size:24
Alignment explanation
Indices: 27527--27574 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
27517 ACATTGTATC
27527 GATACATGAACAATGATGAACAGT
1 GATACATGAACAATGATGAACAGT
* * *
27551 GATACGTGAACAGTGGTGAACAGT
1 GATACATGAACAATGATGAACAGT
27575 AATGTATCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.21
Consensus pattern (24 bp):
GATACATGAACAATGATGAACAGT
Found at i:30655 original size:13 final size:13
Alignment explanation
Indices: 30637--30662 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30627 TACACAAAGT
30637 ATGTATCGATACA
1 ATGTATCGATACA
30650 ATGTATCGATACA
1 ATGTATCGATACA
30663 CAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:32811 original size:21 final size:21
Alignment explanation
Indices: 32778--32827 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
32768 TTGCAAGTTG
*
32778 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
32800 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
32821 AAATAAA
1 AAATAAA
32828 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:34644 original size:15 final size:15
Alignment explanation
Indices: 34624--34654 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34614 TAAAAATGTC
*
34624 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
34639 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
34654 C
1 C
34655 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:36753 original size:13 final size:13
Alignment explanation
Indices: 36735--36772 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
36725 ATTTTTTCTT
36735 TGTATCGATACAA
1 TGTATCGATACAA
*
36748 TGTATCGATACAC
1 TGTATCGATACAA
*
36761 TATATCGATACA
1 TGTATCGATACA
36773 GGGGGATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:38432 original size:23 final size:21
Alignment explanation
Indices: 38390--38432 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
38380 GTTTAATGTT
**
38390 TTTGCTTGACTTTGTGTTTTA
1 TTTGCTTGACTTTGAATTTTA
38411 TTTGCATTGTACTTTGAATTTT
1 TTTGC-TTG-ACTTTGAATTTT
38433 TAATCTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.14, C:0.09, G:0.16, T:0.60
Consensus pattern (21 bp):
TTTGCTTGACTTTGAATTTTA
Found at i:42166 original size:17 final size:16
Alignment explanation
Indices: 42138--42169 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
42128 GTCTGTGTGC
42138 ATTCATACATGCATTG
1 ATTCATACATGCATTG
42154 ATTCATGACATGCATT
1 ATTCAT-ACATGCATT
42170 TTGTAATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (16 bp):
ATTCATACATGCATTG
Found at i:46783 original size:44 final size:44
Alignment explanation
Indices: 46732--46834 Score: 206
Period size: 44 Copynumber: 2.3 Consensus size: 44
46722 TGATACTTGT
46732 ATTTGCATTATTTCATATACTTCTGCACCATTAGATGCATTGGC
1 ATTTGCATTATTTCATATACTTCTGCACCATTAGATGCATTGGC
46776 ATTTGCATTATTTCATATACTTCTGCACCATTAGATGCATTGGC
1 ATTTGCATTATTTCATATACTTCTGCACCATTAGATGCATTGGC
46820 ATTTGCATTATTTCA
1 ATTTGCATTATTTCA
46835 CATGCATTTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 59 1.00
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (44 bp):
ATTTGCATTATTTCATATACTTCTGCACCATTAGATGCATTGGC
Found at i:46866 original size:44 final size:43
Alignment explanation
Indices: 46813--46970 Score: 129
Period size: 44 Copynumber: 3.6 Consensus size: 43
46803 CCATTAGATG
* * *
46813 CATTGGCATTTGCATTATTTCACATGCATTTGCCTCTTCACTAA
1 CATT-GCATTTGCATCATTTCACATGCATTTACCTCTTAACTAA
* * * **
46857 CACTTGCATTTGCATCGTTTCACATGCATCTACAC-CATTAAATGG
1 CA-TTGCATTTGCATCATTTCACATGCATTTAC-CTC-TTAACTAA
* ** * * *
46902 CATTGGAATTTGCATTGTTTCACAAGCATTTACTTCTTTACTAA
1 CATT-GCATTTGCATCATTTCACATGCATTTACCTCTTAACTAA
46946 CATTTGCATTTGCATCATTTCACAT
1 CA-TTGCATTTGCATCATTTCACAT
46971 ACATCTGCAC
Statistics
Matches: 87, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
44 51 0.59
45 36 0.41
ACGTcount: A:0.25, C:0.23, G:0.11, T:0.40
Consensus pattern (43 bp):
CATTGCATTTGCATCATTTCACATGCATTTACCTCTTAACTAA
Found at i:46925 original size:89 final size:88
Alignment explanation
Indices: 46774--46985 Score: 289
Period size: 89 Copynumber: 2.4 Consensus size: 88
46764 AGATGCATTG
* * * * * *
46774 GCATTTGCATTATTTCATATACTTCTGCACCATTAGATGCATTGGCATTTGCATTATTTCACATG
1 GCATTTGCATCATTTCACATACATCTGCACCATTAAATGCATTGGAATTTGCATTATTTCACAAG
*
46839 CATTTGCCTCTTCACTAACACTT
66 CATTTACCTCTTCACTAACACTT
* * * *
46862 GCATTTGCATCGTTTCACATGCATCTACACCATTAAATGGCATTGGAATTTGCATTGTTTCACAA
1 GCATTTGCATCATTTCACATACATCTGCACCATTAAAT-GCATTGGAATTTGCATTATTTCACAA
* * *
46927 GCATTTACTTCTTTACTAACATTT
65 GCATTTACCTCTTCACTAACACTT
46951 GCATTTGCATCATTTCACATACATCTGCACCATTA
1 GCATTTGCATCATTTCACATACATCTGCACCATTA
46986 CCAATACTTG
Statistics
Matches: 106, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
88 31 0.29
89 75 0.71
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (88 bp):
GCATTTGCATCATTTCACATACATCTGCACCATTAAATGCATTGGAATTTGCATTATTTCACAAG
CATTTACCTCTTCACTAACACTT
Found at i:47885 original size:56 final size:55
Alignment explanation
Indices: 47755--47951 Score: 155
Period size: 56 Copynumber: 3.6 Consensus size: 55
47745 AAAATAATTT
* * * **
47755 TCAAAATTTTTGGTGGTGCATCCAAAGCTTCTGGTAGTGGTAATCAGAATAAATG
1 TCAAAATCTTTGGTGGTGTATCCAAAACTTCTGGTAGTCATAATCAGAATAAATG
* * **** * *
47810 TTAAAGTCTTTAACAGTGTATCCAAAAACTTCTGGTGGTCATAATCAGAATGAATG
1 TCAAAATCTTTGGTGGTGTATCC-AAAACTTCTGGTAGTCATAATCAGAATAAATG
* * * * * *
47866 TCAAAATCTTTGGTGGTGTATTCAAAACTTCT-GT-GCCTGTAACCAGAATAATTT
1 TCAAAATCTTTGGTGGTGTATCCAAAACTTCTGGTAGTC-ATAATCAGAATAAATG
* * * *
47920 TCAAAGTCTTTGGTGGTATATCGAAACCTTCT
1 TCAAAATCTTTGGTGGTGTATCCAAAACTTCT
47952 AATGGTGGTT
Statistics
Matches: 109, Mismatches: 31, Indels: 5
0.75 0.21 0.03
Matches are distributed among these distances:
53 2 0.02
54 40 0.37
55 24 0.22
56 43 0.39
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (55 bp):
TCAAAATCTTTGGTGGTGTATCCAAAACTTCTGGTAGTCATAATCAGAATAAATG
Found at i:48380 original size:31 final size:31
Alignment explanation
Indices: 48331--48407 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
48321 TCTTATCGAG
* *
48331 TAATAAGTTTACCCTGGTCACCCT-TTTGAC
1 TAATAGGTTTACCCTGGTCAACCTCTTTGAC
*
48361 TAATAGGTTTCACCTTGGTCAACCTCTTTGAC
1 TAATAGGTTT-ACCCTGGTCAACCTCTTTGAC
*
48393 T-TTAGGTTTGACCCT
1 TAATAGGTTT-ACCCT
48408 AGTGACCATT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
30 9 0.23
31 23 0.59
32 7 0.18
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.39
Consensus pattern (31 bp):
TAATAGGTTTACCCTGGTCAACCTCTTTGAC
Found at i:50457 original size:23 final size:22
Alignment explanation
Indices: 50413--50457 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
50403 ATGTGTTAGC
* **
50413 TTTAATTTTGATTTTTTTTTAT
1 TTTAATTTTGATATTTAATTAT
50435 TTTAATATTTGATATTTAATTAT
1 TTTAAT-TTTGATATTTAATTAT
50458 AATTCCCATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTAATTTTGATATTTAATTAT
Found at i:57003 original size:22 final size:21
Alignment explanation
Indices: 56968--57017 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
56958 CTTGTTGATG
*
56968 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
56988 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
57009 AATTTGAAG
1 ATTTTGAAG
57018 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:57014 original size:21 final size:22
Alignment explanation
Indices: 56975--57017 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
56965 ATGATTTTGA
* *
56975 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
56997 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
57018 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:61544 original size:9 final size:9
Alignment explanation
Indices: 61530--61563 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
61520 TTCTAGTCAC
61530 CATCATTAT
1 CATCATTAT
61539 CATCATTAT
1 CATCATTAT
* *
61548 TATCTTTAT
1 CATCATTAT
61557 CATCATT
1 CATCATT
61564 GATGGTTGAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (9 bp):
CATCATTAT
Found at i:64601 original size:143 final size:140
Alignment explanation
Indices: 64270--64590 Score: 376
Period size: 143 Copynumber: 2.3 Consensus size: 140
64260 AACCATACGG
* *
64270 AAAACCATAAAAATATTAAAAATTTTGAAAAATCAAGAGAAAAATTTTATTTAATTTTTAATTTT
1 AAAACCAT-AAAATATTAAAAATTTTGAAAAATTAAGAGAATAATTTTATTTAATTTTTAATTTT
** *
64335 CAAAAAAATTCATTTCGTACCTTAATGGGGAACCGAAAAGATACGAAAAGTTGTGAAGATCTCTA
65 CAAAAAAATTCATTTCGTACCTTAATGGACAACCGAAAAGATACGAAAAGTTGTGAAAATCTCTA
*
64400 TACCCCTACGA
130 TACCCCCACGA
* * * *
64411 AAAATCATAGGAATATTAGAAATTTTGAAAAATTAAGAGAATAATTTTCATTTAATTTTTATTTT
1 AAAACCATA-AAATATTAAAAATTTTGAAAAATTAAGAGAATAATTTT-ATTTAATTTTTAATTT
* * *
64476 TCAAAAAAAATTCATTTTGTACCTTAATGGACAACCGAAATGATACGAAATGATT-TGAAAAT-T
64 TC-AAAAAAATTCATTTCGTACCTTAATGGACAACCGAAAAGATACGAAAAG-TTGTGAAAATCT
* * *
64539 TTCATACCCCCATGG
127 CT-ATACCCCCACGA
* * * * *
64554 ATACCCTTGAAAATATTACAAATTTTAAAAAATTAAG
1 AAAACCAT-AAAATATTAAAAATTTTGAAAAATTAAG
64591 GTGATAATTT
Statistics
Matches: 151, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
140 1 0.01
141 41 0.27
142 19 0.13
143 87 0.58
144 3 0.02
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.33
Consensus pattern (140 bp):
AAAACCATAAAATATTAAAAATTTTGAAAAATTAAGAGAATAATTTTATTTAATTTTTAATTTTC
AAAAAAATTCATTTCGTACCTTAATGGACAACCGAAAAGATACGAAAAGTTGTGAAAATCTCTAT
ACCCCCACGA
Found at i:67672 original size:42 final size:43
Alignment explanation
Indices: 67546--67677 Score: 137
Period size: 42 Copynumber: 3.1 Consensus size: 43
67536 AATAAAGATG
* * *
67546 AAAAGGTTGATCGAGATTGAACCAACAAGTCAATAAAGGAT--
1 AAAAGGTTGATCGGGATTGAACCGACAAGTCAACAAAGGATAA
* * * * *
67587 AAAAGGATTTACTCGGGACT-AAGCTGACAGGTAAACAAAGGATAA
1 AAAAGG-TTGA-TCGGGATTGAA-CCGACAAGTCAACAAAGGATAA
67632 AAAAGGTTGAT-GGGATTGAACCGACAAGTCAACAAAGGATAA
1 AAAAGGTTGATCGGGATTGAACCGACAAGTCAACAAAGGATAA
67674 AAAA
1 AAAA
67678 CTTAACTGAT
Statistics
Matches: 72, Mismatches: 13, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
41 6 0.08
42 33 0.46
43 24 0.33
44 3 0.04
45 6 0.08
ACGTcount: A:0.47, C:0.12, G:0.23, T:0.17
Consensus pattern (43 bp):
AAAAGGTTGATCGGGATTGAACCGACAAGTCAACAAAGGATAA
Found at i:67875 original size:47 final size:47
Alignment explanation
Indices: 67774--68266 Score: 371
Period size: 47 Copynumber: 10.5 Consensus size: 47
67764 TAATTGATAT
* * ** *
67774 AGTCAAATAAGGATGACAAA-AGTTTGACCA-GAACTAACACTAATAC
1 AGTCAAACAAGGGTGA-AAAGAGTTTGACCAGGTCCTAACACCAATAC
* * * *
67820 AGTCAAACAATGATGAAAAGAGTTTGACAAGGTCCTAACACCAATAT
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
* * * **** * *
67867 AGCCAAACAATGATGAAAAGAGTTTGACCAGGTCCTAATGTTAGTAT
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
** * ** *
67914 AGTCAAATGAGGGTGAAAAGAGTTTGACGAGGTCCTAATGCAAATAC
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
* * * *
67961 AGTCAAATAAAGGTGAAATGAATTTGACCAGGTCCTAACACCAATAC
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
* ** * *
68008 AGCCAAACAAGGGCAAAAAGAGTTTGACCAGGTCATAACATCAATAC
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
* * * * * * *
68055 AGTTAAACGAGGGCGAAAAGAATTTAACCAAGTCCTAACACCAATAT
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
* * * * *
68102 AGTCAAACGAGGGTGAAAAGTGTTTAACCAGGTCTTAACGCCAATAC
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
* * * ** ** *
68149 AATAAAACAAGGGTGAAAAGAGTTTAACCAAATCCTAATGCAAATAC
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
* ** * ** * * *
68196 ATTCAAATGAGGATGAAAAGAGTTTGACGGGGTCCTATCGCCAATGC
1 AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
* *
68243 ATTCAAA-AAGTGGTGAGAAGAGTT
1 AGTCAAACAAG-GGTGAAAAGAGTT
68267 CGGTAAAGAG
Statistics
Matches: 359, Mismatches: 85, Indels: 5
0.80 0.19 0.01
Matches are distributed among these distances:
45 3 0.01
46 25 0.07
47 331 0.92
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (47 bp):
AGTCAAACAAGGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATAC
Found at i:67995 original size:141 final size:141
Alignment explanation
Indices: 67807--68232 Score: 438
Period size: 141 Copynumber: 3.0 Consensus size: 141
67797 TTGACCAGAA
* * * * *
67807 CTAACACTAATACAGTCAAACAATGATGAAAAGAGTTTGACAAGGTCCTAACACCAATATAGCCA
1 CTAACACAAATACAGTCAAACAAAGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATACAGCCA
* * * * *
67872 AACAATGATGAAAAGAGTTTGACCAGGTCCTAATGTTAGTATAGTCAAATGAGGGTGAAAAGAGT
66 AACAAGGGTGAAAAGAGTTTGACCAGGTCCTAATGTAAATACAGTCAAATGAGGGTGAAAAGAGT
67937 TTGACGAGGTC
131 TTGACGAGGTC
** * * *
67948 CTAATGCAAATACAGTCAAATAAAGGTGAAATGAATTTGACCAGGTCCTAACACCAATACAGCCA
1 CTAACACAAATACAGTCAAACAAAGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATACAGCCA
** * ** * * * * *
68013 AACAAGGGCAAAAAGAGTTTGACCAGGTCATAACATCAATACAGTTAAACGAGGGCGAAAAGAAT
66 AACAAGGGTGAAAAGAGTTTGACCAGGTCCTAATGTAAATACAGTCAAATGAGGGTGAAAAGAGT
* * *
68078 TTAACCAAGTC
131 TTGACGAGGTC
* * * * * * * * ***
68089 CTAACACCAATATAGTCAAACGAGGGTGAAAAGTGTTTAACCAGGTCTTAACGCCAATACAATAA
1 CTAACACAAATACAGTCAAACAAAGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATACAGCCA
* ** * * *
68154 AACAAGGGTGAAAAGAGTTTAACCAAATCCTAATGCAAATACATTCAAATGAGGATGAAAAGAGT
66 AACAAGGGTGAAAAGAGTTTGACCAGGTCCTAATGTAAATACAGTCAAATGAGGGTGAAAAGAGT
*
68219 TTGACGGGGTC
131 TTGACGAGGTC
68230 CTA
1 CTA
68233 TCGCCAATGC
Statistics
Matches: 222, Mismatches: 63, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
141 222 1.00
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (141 bp):
CTAACACAAATACAGTCAAACAAAGGTGAAAAGAGTTTGACCAGGTCCTAACACCAATACAGCCA
AACAAGGGTGAAAAGAGTTTGACCAGGTCCTAATGTAAATACAGTCAAATGAGGGTGAAAAGAGT
TTGACGAGGTC
Found at i:84083 original size:20 final size:20
Alignment explanation
Indices: 84058--84097 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
84048 TTCAGCATTT
*
84058 GACAAAAGGGAAGTAATAAA
1 GACAAAAGGGAAGAAATAAA
*
84078 GACAAAGGGGAAGAAATAAA
1 GACAAAAGGGAAGAAATAAA
84098 AAGAATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.28, T:0.07
Consensus pattern (20 bp):
GACAAAAGGGAAGAAATAAA
Found at i:84764 original size:13 final size:13
Alignment explanation
Indices: 84746--84772 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84736 ATATTATGCT
84746 TTGTATCGATACA
1 TTGTATCGATACA
84759 TTGTATCGATACA
1 TTGTATCGATACA
84772 T
1 T
84773 GATCTTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:84783 original size:19 final size:19
Alignment explanation
Indices: 84758--84818 Score: 81
Period size: 19 Copynumber: 3.2 Consensus size: 19
84748 GTATCGATAC
84758 ATTGTATCGATACATGATC-
1 ATTGTATCGATACATGA-CA
*
84777 TTTGTATCGATACATGCACA
1 ATTGTATCGATACATG-ACA
84797 ATTGTATCGATACATGA-A
1 ATTGTATCGATACATGACA
84815 ATTG
1 ATTG
84819 GCAGTAGCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
18 5 0.13
19 17 0.45
20 16 0.42
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:84783 original size:32 final size:33
Alignment explanation
Indices: 84729--84791 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
84719 CATTCGGATC
* *
84729 TATCGATATATTATGCTTTGTATCGATACATTG
1 TATCGATACATGATGCTTTGTATCGATACATTG
84762 TATCGATACATGAT-CTTTGTATCGATACAT
1 TATCGATACATGATGCTTTGTATCGATACAT
84792 GCACAATTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (33 bp):
TATCGATACATGATGCTTTGTATCGATACATTG
Found at i:88024 original size:50 final size:51
Alignment explanation
Indices: 87922--88039 Score: 132
Period size: 50 Copynumber: 2.3 Consensus size: 51
87912 ATTTAACTAG
* * * *
87922 ATGTATCGATACATTTGGGTCAAAAACCCATAATGTATCGATACATTGAAAA
1 ATGTATCGATACATTTGGATC-AAAACCCAGAATGTATCGATACAATAAAAA
* *
87974 ATGTATCAATACATTTGGATC-AAACCCAGAATGT-TCCGATATAATAAAAA
1 ATGTATCGATACATTTGGATCAAAACCCAGAATGTAT-CGATACAATAAAAA
* *
88024 ATATATCGATTCATTT
1 ATGTATCGATACATTT
88040 TCTTTCTAGA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.02
50 36 0.64
52 19 0.34
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (51 bp):
ATGTATCGATACATTTGGATCAAAACCCAGAATGTATCGATACAATAAAAA
Found at i:88253 original size:20 final size:21
Alignment explanation
Indices: 88228--88268 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
88218 AAAAACTTTT
88228 TATTCGTTTA-CATATATATA
1 TATTCGTTTACCATATATATA
88248 TATTCGTTTACGCATATATAT
1 TATTCGTTTAC-CATATATAT
88269 TCGATCTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
22 9 0.47
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (21 bp):
TATTCGTTTACCATATATATA
Found at i:95645 original size:12 final size:12
Alignment explanation
Indices: 95604--95656 Score: 65
Period size: 12 Copynumber: 4.5 Consensus size: 12
95594 TTTGTTTTTA
*
95604 TTTTTTCTGTCT
1 TTTTTTCTCTCT
*
95616 TTTCTTTCT-TCA
1 TTT-TTTCTCTCT
95628 TTTTTTCTCTCT
1 TTTTTTCTCTCT
95640 TTTTTTCTCT-T
1 TTTTTTCTCTCT
95651 TTTTTT
1 TTTTTT
95657 AGTTGAATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
11 12 0.32
12 20 0.54
13 5 0.14
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTTCTCTCT
Found at i:95648 original size:10 final size:10
Alignment explanation
Indices: 95613--95655 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 10
95603 ATTTTTTCTG
95613 TCTTTTCTTTC
1 TCTTTT-TTTC
95624 TTCATTTTTTCTC
1 -TC-TTTTTT-TC
95637 TCTTTTTTTC
1 TCTTTTTTTC
95647 TCTTTTTTT
1 TCTTTTTTT
95656 TAGTTGAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 11 0.38
11 6 0.21
12 6 0.21
13 6 0.21
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (10 bp):
TCTTTTTTTC
Found at i:95656 original size:24 final size:24
Alignment explanation
Indices: 95603--95655 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
95593 ATTTGTTTTT
*
95603 ATTTTTTCTGTCTTTTCTTTCTTC
1 ATTTTTTCTCTCTTTTCTTTCTTC
95627 ATTTTTTCTCTCTTTT-TTTC-TC
1 ATTTTTTCTCTCTTTTCTTTCTTC
*
95649 TTTTTTT
1 ATTTTTT
95656 TAGTTGAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 8 0.30
23 4 0.15
24 15 0.56
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (24 bp):
ATTTTTTCTCTCTTTTCTTTCTTC
Found at i:96294 original size:16 final size:17
Alignment explanation
Indices: 96270--96302 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
96260 AAAAAACTCA
96270 ATTTCTCAAAAAAAAAT
1 ATTTCTCAAAAAAAAAT
*
96287 ATTT-TCAAAGAAAAAT
1 ATTTCTCAAAAAAAAAT
96303 TCAAAAGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (17 bp):
ATTTCTCAAAAAAAAAT
Found at i:96374 original size:166 final size:165
Alignment explanation
Indices: 96228--96694 Score: 448
Period size: 167 Copynumber: 2.8 Consensus size: 165
96218 TTTAAACTGA
*
96228 AAAAAAAATC-CTTCCTAAAAAATTTACGGAG-AAAAAAACTCAATTTCTCAAAAAAA-AATATT
1 AAAAAAAATCACTT-CAAAAAAATTTACGGAGTAAAAAAACTCAATTTC-CAAAAAAAGAA-A-T
* * * * *
96290 TTCAAAG-AAAAA-TTC-AAAAGTCATGAAAATGAATTAATTTTTTAAAATTGAATTAATATAAA
62 TTCAAAGAAAAAAGATCAAAAACTCATGAAAATGAATGAATTTTTAAAAACT-AATTAATATAAA
*
96352 ATAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACT
126 ATAAATAATGATGTTCGATGAATTTTAAAAATTGAAAACT
* * * * ** *
96392 AAGAAAAATCATCTTGAAAAAAATTTACGGAGTTGAAAACACTGTATTTCGAAAAAAAGAAATTT
1 AAAAAAAATCA-CTTCAAAAAAATTTACGGAG-TAAAAAAACTCAATTTCCAAAAAAAGAAATTT
*
96457 CAAGGAAAAAAGATCAAAAACTCATGAAAATGAATGAATTTTTAAAAACTAATTAATATAAAATA
64 CAAAGAAAAAAGATCAAAAACTCATGAAAATGAATGAATTTTTAAAAACTAATTAATATAAAATA
* *
96522 AATAATGGTGTTCGATGAATTTTAAAAATTGAAAACC
129 AATAATGATGTTCGATGAATTTTAAAAATTGAAAACT
* * ** * * ** * * *
96559 AAGACAAATCTTGTTGAAAAAAATTTACAGAGT-TGAAAACATCGTATTTCGAAAAAAAAAAAGA
1 AAAAAAAATC-ACTTCAAAAAAATTTACGGAGTAAAAAAAC-TC-AATTTC--CAAAAAAAGA-A
* * *
96623 ATTTC-AAGAAAGAAA-ATCACAAACTCATTAAAATGAATGAATTTTTGAAAACTGAATTAATAT
60 ATTTCAAAGAAA-AAAGATCAAAAACTCATGAAAATGAATGAATTTTTAAAAACT-AATTAATAT
*
96686 GAAATAAAT
123 AAAATAAAT
96695 GATAATATTT
Statistics
Matches: 255, Mismatches: 32, Indels: 26
0.81 0.10 0.08
Matches are distributed among these distances:
164 9 0.04
165 26 0.10
166 18 0.07
167 98 0.38
168 30 0.12
169 48 0.19
170 26 0.10
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.28
Consensus pattern (165 bp):
AAAAAAAATCACTTCAAAAAAATTTACGGAGTAAAAAAACTCAATTTCCAAAAAAAGAAATTTCA
AAGAAAAAAGATCAAAAACTCATGAAAATGAATGAATTTTTAAAAACTAATTAATATAAAATAAA
TAATGATGTTCGATGAATTTTAAAAATTGAAAACT
Found at i:96519 original size:167 final size:169
Alignment explanation
Indices: 96305--96714 Score: 569
Period size: 167 Copynumber: 2.4 Consensus size: 169
96295 AGAAAAATTC
* * * *
96305 AAAAGTCATGAAAATGAATTAATTTTTTAAAATTGAATTAATATAAAATAAATAATGATGTTTGA
1 AAAACTCATGAAAATGAATGAATTTTTAAAAACTGAATTAATATAAAATAAATAATGATGTTTGA
* *
96370 TGAATTTTAAAAATTGAAAACTAAGAAAAATCATCTTGAAAAAAATTTACGGAGTTGAAAACA-C
66 TGAATTTTAAAAATTGAAAACCAAGAAAAATCATCTTGAAAAAAATTTACAGAGTTGAAAACATC
*
96434 TGTATTTCG-AAAAAAAGA-AATTTCAAGGAAA-AAAGATCA
131 -GTATTTCGAAAAAAAAAAGAATTTCAA-GAAAGAAA-ATCA
* *
96473 AAAACTCATGAAAATGAATGAATTTTTAAAAACT-AATTAATATAAAATAAATAATGGTGTTCGA
1 AAAACTCATGAAAATGAATGAATTTTTAAAAACTGAATTAATATAAAATAAATAATGATGTTTGA
* * *
96537 TGAATTTTAAAAATTGAAAACCAAGACAAATCTTGTTGAAAAAAATTTACAGAGTTGAAAACATC
66 TGAATTTTAAAAATTGAAAACCAAGAAAAATCATCTTGAAAAAAATTTACAGAGTTGAAAACATC
96602 GTATTTCGAAAAAAAAAAAGAATTTCAAGAAAGAAAATCA
131 GTATTTCG-AAAAAAAAAAGAATTTCAAGAAAGAAAATCA
* * * * * * *
96642 CAAACTCATTAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATGATAATATTTGA
1 AAAACTCATGAAAATGAATGAATTTTTAAAAACTGAATTAATATAAAATAAATAATGATGTTTGA
*
96707 TTAATTTT
66 TGAATTTT
96715 GATGTCTGAA
Statistics
Matches: 214, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
167 94 0.44
168 31 0.14
169 47 0.22
170 42 0.20
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (169 bp):
AAAACTCATGAAAATGAATGAATTTTTAAAAACTGAATTAATATAAAATAAATAATGATGTTTGA
TGAATTTTAAAAATTGAAAACCAAGAAAAATCATCTTGAAAAAAATTTACAGAGTTGAAAACATC
GTATTTCGAAAAAAAAAAGAATTTCAAGAAAGAAAATCA
Found at i:97381 original size:31 final size:31
Alignment explanation
Indices: 97296--97384 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 31
97286 CTCGGATATA
* *
97296 GGTGCCACCAACTTGTGTTGGCTTTGACTCG
1 GGTGCCACCAACTTGTGTAGGCTTTGACTAG
* * * * ** *
97327 AGCGTCGCCAACTCATGCAGGCTTTGACTAG
1 GGTGCCACCAACTTGTGTAGGCTTTGACTAG
*
97358 GGTGCCACCAACTTGTGTGGGCTTTGA
1 GGTGCCACCAACTTGTGTAGGCTTTGA
97385 AAAGGGTTGC
Statistics
Matches: 41, Mismatches: 17, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.17, C:0.26, G:0.29, T:0.28
Consensus pattern (31 bp):
GGTGCCACCAACTTGTGTAGGCTTTGACTAG
Found at i:97438 original size:28 final size:28
Alignment explanation
Indices: 97373--97869 Score: 538
Period size: 28 Copynumber: 17.5 Consensus size: 28
97363 CACCAACTTG
*
97373 TGTGGGCTTTGAAAAGGGTTGCCACTGACT
1 TGTGGGCTTTGAAAA--GATGCCACTGACT
* * * *
97403 TATGGGCTTTAAAAAGCTGCCATTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
* *
97431 TGTTGGCTTTTG-AAAGGTGCCACTGACT
1 TGTGGGC-TTTGAAAAGATGCCACTGACT
* * * *
97459 TGTGGGCTTTGAAAGGATGCCCCTAAGT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
*
97487 TGTGGGCTTTG-AAAGAATGCCATTGACT
1 TGTGGGCTTTGAAAAG-ATGCCACTGACT
* *
97515 TGTGGGCTTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAAGATGCCACTGACT
* * *
97544 TGTGGCCTTTGAAAAGGTACCACTTG-CT
1 TGTGGGCTTTGAAAAGATGCCAC-TGACT
*
97572 TGTGGGCTTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAAGATGCCACTGACT
* ** * *
97601 TATAGGATTTTGAAAGGATGCCATTGACT
1 TGT-GGGCTTTGAAAAGATGCCACTGACT
*
97630 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
*
97658 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
97686 TGTGGGCTTT-AAAAGAATGCCACTGACT
1 TGTGGGCTTTGAAAAG-ATGCCACTGACT
97714 TGTGGGCTTTG-AAAGAATGCCACTGACT
1 TGTGGGCTTTGAAAAG-ATGCCACTGACT
*
97742 TGTGGGCTTTTGAAAGGATGCCACT-ACGT
1 TGTGGGC-TTTGAAAAGATGCCACTGAC-T
* *
97771 TGTGGGCTTTGAAAAGGTACCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
* * * *
97799 TTTGGGCTTTAAAAAGTTGCCACTGCCT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
* *
97827 TGTGGGTTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAAGATGCCACTGACT
97855 TGTGGGCTTTGAAAA
1 TGTGGGCTTTGAAAA
97870 AAGGTCGTAT
Statistics
Matches: 395, Mismatches: 57, Indels: 32
0.82 0.12 0.07
Matches are distributed among these distances:
27 11 0.03
28 278 0.70
29 85 0.22
30 21 0.05
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGATGCCACTGACT
Found at i:97574 original size:113 final size:111
Alignment explanation
Indices: 97373--97868 Score: 584
Period size: 113 Copynumber: 4.4 Consensus size: 111
97363 CACCAACTTG
** * * * * * *
97373 TGTGGGCTTTGAAAAGGGTTGCCACTGACTTATGGGCTTTAAAAAGCTGCCATTGACTTGTTGGC
1 TGTGGGCTTTG-AAA-GAATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTG-TGGC
* * * * * *
97438 TTTTGAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCCCTAAGT
63 CTTTGAAAGGTACCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACT
*
97487 TGTGGGCTTTGAAAGAATGCCATTGACTTGTGGGCTTTTGAAAGGATGCCACTAACTTGTGGCCT
1 TGTGGGCTTTGAAAGAATGCCATTGACTTGTGGGC-TTTGAAAGGATGCCACTGACTTGTGGCCT
*
97552 TTGAAAAGGTACCACTTG-CTTGTGGGCTTTTGAAAGGATGCCACTGACT
65 TTG-AAAGGTACCAC-TGACTTGTGGGC-TTTAAAAGGATGCCACTGACT
* ** * *
97601 TATAGGATTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
1 TGT-GGGCTTTGAAAGAATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGCCT
* *
97666 TTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGAATGCCACTGACT
65 TTGAAAGG-TACCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACT
* *
97714 TGTGGGCTTTGAAAGAATGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACT-ACGTTGTGGGC
1 TGTGGGCTTTGAAAGAATGCCATTGACTTGTGGGC-TTTGAAAGGATGCCACTGAC-TTGTGGCC
* * * *
97778 TTTGAAAAGGTACCACTGACTTTTGGGCTTTAAAAAGTTGCCACTGCCT
64 TTTG-AAAGGTACCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACT
*
97827 TGTGGGTTTTGAAA-AGATGCCATTGACTTGTGGGCTTTGAAA
1 TGTGGGCTTTGAAAGA-ATGCCATTGACTTGTGGGCTTTGAAA
97869 AAAGGTCGTA
Statistics
Matches: 335, Mismatches: 36, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
112 63 0.19
113 161 0.48
114 82 0.24
115 29 0.09
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (111 bp):
TGTGGGCTTTGAAAGAATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGCCTT
TGAAAGGTACCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACT
Found at i:99192 original size:12 final size:11
Alignment explanation
Indices: 99172--99214 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
99162 AGACCCTTCC
99172 TTTTTTTTTTA
1 TTTTTTTTTTA
*
99183 TTTATTTTTTA
1 TTTTTTTTTTA
*
99194 TTTTTGTTTTTC
1 TTTTT-TTTTTA
99206 TTTTTTTTT
1 TTTTTTTTT
99215 AAAAAAGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.07, C:0.02, G:0.02, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:105098 original size:36 final size:36
Alignment explanation
Indices: 105051--105123 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
105041 GGGGAGATTT
105051 ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
1 ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
105087 ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
1 ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
105123 A
1 A
105124 ATTACCTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.05, G:0.36, T:0.16
Consensus pattern (36 bp):
ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
Found at i:105732 original size:20 final size:20
Alignment explanation
Indices: 105709--105781 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
105699 ACAATTCAAA
105709 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
105729 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
105750 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
105770 GTATCGATACAT
1 GTATCGATACAT
105782 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:105753 original size:21 final size:21
Alignment explanation
Indices: 105727--105802 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
105717 ACATGTTGCA
105727 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
105748 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
105768 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
105789 ATGTATCGATACAT
1 ATGTATCGATACAT
105803 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:105760 original size:41 final size:41
Alignment explanation
Indices: 105709--105802 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
105699 ACAATTCAAA
*
105709 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
105750 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
105791 GTATCGATACAT
1 GTATCGATACAT
105803 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:105859 original size:13 final size:13
Alignment explanation
Indices: 105841--105866 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105831 TACAGCAAGT
105841 ATGTATCGATACA
1 ATGTATCGATACA
105854 ATGTATCGATACA
1 ATGTATCGATACA
105867 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:109948 original size:15 final size:15
Alignment explanation
Indices: 109928--109958 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
109918 TAAAAATGTC
*
109928 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
109943 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
109958 C
1 C
109959 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:112055 original size:13 final size:13
Alignment explanation
Indices: 112037--112075 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
112027 ACATTTTTTT
112037 TTGTATCGATACA
1 TTGTATCGATACA
112050 TTGTATCGATACA
1 TTGTATCGATACA
*
112063 CTGTATCGATACA
1 TTGTATCGATACA
112076 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:113943 original size:36 final size:36
Alignment explanation
Indices: 113896--113968 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
113886 GGGGAGATTT
113896 ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
1 ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
113932 ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
1 ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
113968 A
1 A
113969 ATTACCTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.05, G:0.36, T:0.16
Consensus pattern (36 bp):
ATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTG
Found at i:114577 original size:20 final size:20
Alignment explanation
Indices: 114554--114626 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
114544 ACAATTCAAA
114554 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
114574 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
114595 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
114615 GTATCGATACAT
1 GTATCGATACAT
114627 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:114598 original size:21 final size:21
Alignment explanation
Indices: 114572--114647 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
114562 ACATGTTGCA
114572 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
114593 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
114613 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
114634 ATGTATCGATACAT
1 ATGTATCGATACAT
114648 TTCTTGACAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:114605 original size:41 final size:41
Alignment explanation
Indices: 114554--114647 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
114544 ACAATTCAAA
*
114554 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
114595 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
114636 GTATCGATACAT
1 GTATCGATACAT
114648 TTCTTGACAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:114704 original size:13 final size:13
Alignment explanation
Indices: 114686--114711 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
114676 TACAGCAAGT
114686 ATGTATCGATACA
1 ATGTATCGATACA
114699 ATGTATCGATACA
1 ATGTATCGATACA
114712 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:118694 original size:170 final size:168
Alignment explanation
Indices: 118447--118886 Score: 609
Period size: 170 Copynumber: 2.6 Consensus size: 168
118437 CTCATTTCTC
* * * * * * **
118447 AAAAAAAAAGATTTTCAAAG-AAAAATTC-AAAAGTCATGAAAATGAATTAATTTTTTAAAACTG
1 AAAAAAGAAGAATTTCAAGGAAAAAAATCAAAAACTCATGAAAATGAATGAATTTTAAAAAACTG
* *
118510 AATTAATATAAAATAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACCAATAAAAATCCTC
66 AATTAATATAAAATAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCC
* * *
118575 TTGAAAAAAGTTTATGGAGTTGAAAACACTGTATTTCG
131 TTGAAAAAAATTTACGGAGTTGAAAACACTATATTTCG
118613 AAAAAA-AAGAAATTTCAAGGAAAAAAGATCAAAAACTCATGAAAATGAATGAATTTTAAAAAAA
1 AAAAAAGAAG-AATTTCAAGGAAAAAA-ATCAAAAACTCATGAAAATGAATGAATTTT-AAAAAA
* * *
118677 TTAAATTAATATAAAATAAATAATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATC
63 CTGAATTAATATAAAATAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATC
*
118742 CCCTTGAAAAAAATTTACGGAGTTGAAAATACTATATTTCG
128 CCCTTGAAAAAAATTTACGGAGTTGAAAACACTATATTTCG
*
118783 AAAAAAGAAGAATTTCAAGGAAAAAAATCACAAACTCATGAAAATGAATGAATTTTTTAAAAAAC
1 AAAAAAGAAGAATTTCAAGGAAAAAAATCAAAAACTCATGAAAATGAATGAA--TTTTAAAAAAC
* ** *
118848 TGAATTAATATGAAATAAAT-ATGATAATTGATTAATTTT
64 TGAATTAATATAAAATAAATAATGATGTTTGATGAATTTT
118887 GATGTCTGGA
Statistics
Matches: 242, Mismatches: 24, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
165 3 0.01
166 14 0.06
167 5 0.02
168 2 0.01
169 64 0.26
170 147 0.61
171 7 0.03
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.29
Consensus pattern (168 bp):
AAAAAAGAAGAATTTCAAGGAAAAAAATCAAAAACTCATGAAAATGAATGAATTTTAAAAAACTG
AATTAATATAAAATAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCC
TTGAAAAAAATTTACGGAGTTGAAAACACTATATTTCG
Found at i:121797 original size:20 final size:20
Alignment explanation
Indices: 121772--121817 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
121762 ATTTCTATTA
121772 ATACAT-AAGACATTATATCG
1 ATACATGAAGA-ATTATATCG
* *
121792 ATACATGATGAATTGTATCG
1 ATACATGAAGAATTATATCG
121812 ATACAT
1 ATACAT
121818 TGTTTGTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (20 bp):
ATACATGAAGAATTATATCG
Found at i:124524 original size:37 final size:37
Alignment explanation
Indices: 124474--124546 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
124464 GTGGAGCATA
124474 GCTACAAGGCAAGGGAATCAGAGAAGAATTTTTGGTT
1 GCTACAAGGCAAGGGAATCAGAGAAGAATTTTTGGTT
*
124511 GCTACAAGGCAAGGGAATTAGAGAAGAATTTTTGGT
1 GCTACAAGGCAAGGGAATCAGAGAAGAATTTTTGGT
124547 ACCTTGATAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.10, G:0.30, T:0.25
Consensus pattern (37 bp):
GCTACAAGGCAAGGGAATCAGAGAAGAATTTTTGGTT
Found at i:130592 original size:20 final size:20
Alignment explanation
Indices: 130539--130584 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
130529 AACCCTTGAA
130539 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
130559 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
130579 TGTATC
1 TGTATC
130585 CATTCATTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTATGCTT
Found at i:130611 original size:19 final size:19
Alignment explanation
Indices: 130587--130644 Score: 89
Period size: 19 Copynumber: 3.0 Consensus size: 19
130577 TTTGTATCCA
130587 TTCATTGTATCGATACATG
1 TTCATTGTATCGATACATG
130606 TTCATTGTATCGATACATG
1 TTCATTGTATCGATACATG
**
130625 GACAATTGTATCGATACATG
1 TTC-ATTGTATCGATACATG
130645 AAACTGGCAG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 20 0.56
20 16 0.44
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (19 bp):
TTCATTGTATCGATACATG
Found at i:130698 original size:20 final size:20
Alignment explanation
Indices: 130673--130726 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
130663 CTACCACTGT
130673 TTGTATCGATACAT-AAGACA
1 TTGTATCGATACATGAAGA-A
*
130693 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGAAGAA
*
130713 TTGTATCAATACAT
1 TTGTATCGATACAT
130727 TGCTTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGAAGAA
Found at i:133122 original size:11 final size:10
Alignment explanation
Indices: 133108--133143 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
133098 TTTTTCACTA
133108 TTTTTTTCTT
1 TTTTTTTCTT
*
133118 GTTTTTTCTT
1 TTTTTTTCTT
133128 TTTTCTTTCTT
1 TTTT-TTTCTT
133139 TTTTT
1 TTTTT
133144 CCCTCTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:133842 original size:164 final size:164
Alignment explanation
Indices: 133528--133823 Score: 357
Period size: 164 Copynumber: 1.8 Consensus size: 164
133518 GTTTAATAAC
* * *
133528 AATATTAGATGAATTTTAAAAACTTTAAATCGAGAAAAATCTACCCGAAAATATTTATGGATTAG
1 AATATTAGATGAATTCTAAAAACTTTAAATCGAGAAAAATCTACCCGAAAAAATTTATGGAGTAG
* * * * * * *
133593 AAATCGATTTTTTGAAAATAGGGAGATTTCGAAGAAAAATTTCAAAACTCATTAAAATAAATGAA
66 AAATCGATTTTTAGAAAATAAGGACATTTCAAAGAAAAAATCCAAAACTCATGAAAATAAATGAA
133658 TTGTTCAAAAAAATTTTAATAAAAGCTTAATGAT
131 TTGTTCAAAAAAATTTTAATAAAAGCTTAATGAT
* * * *
133692 AATATTAGATGAATTCTAAAAATTTTAAATCGA-AGAAAATC-CCCCTAAAAAATTTATGGGGTA
1 AATATTAGATGAATTCTAAAAACTTTAAATCGAGA-AAAATCTACCCGAAAAAATTTATGGAGTA
* * * *
133755 GAAAACTC-AGTTTTTAGAGAATAAGG-CATTTCAAATAAAAAATCCAAAACTTATGAAAATGAA
65 G-AAA-TCGA-TTTTTAGAAAATAAGGACATTTCAAAGAAAAAATCCAAAACTCATGAAAATAAA
*
133818 TTAATT
127 TGAATT
133824 TCTTAAAAAT
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
163 19 0.17
164 75 0.69
165 15 0.14
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.31
Consensus pattern (164 bp):
AATATTAGATGAATTCTAAAAACTTTAAATCGAGAAAAATCTACCCGAAAAAATTTATGGAGTAG
AAATCGATTTTTAGAAAATAAGGACATTTCAAAGAAAAAATCCAAAACTCATGAAAATAAATGAA
TTGTTCAAAAAAATTTTAATAAAAGCTTAATGAT
Found at i:134218 original size:166 final size:166
Alignment explanation
Indices: 133782--134286 Score: 470
Period size: 167 Copynumber: 3.0 Consensus size: 166
133772 AGAATAAGGC
** * * *
133782 ATTTCAAATAAAAAA-TCCAAAACTTATGAAAATGAATTAATTTCTTAAAAA-TAATTTAATA-G
1 ATTTCAAGGAAAAAATTCAAAAACTTATGAAAATGAA-GAGTTT-TTAAAAACTAATTTAATATG
* * * * * *
133844 GAATCAAATGATGATATTTGATGAATTTTAAATATTAAAAACCAAGAAAAATCCTCTTGAAACAA
64 AAAT-AAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCTCGAAAAAA
* * * *
133909 TTTACGGAGTAGAAAACTCTGTATTTCAAAAATATGATA
128 ATTACGGAGAAGAAAACTCTATATTTCAAAAATATGAGA
* * * *
133948 ATTTCAAGGAAAAAATTCAAAAACTCATGAAAATGACAGAGTTTTTGAAAACTAATTTCATGTGA
1 ATTTCAAGGAAAAAATTCAAAAACTTATGAAAATGA-AGAGTTTTTAAAAACTAATTTAATATGA
** *
134013 GTTAAATCAA-AAAATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCC-CTCCGAAAAAA
65 AATAAAT-AATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCT-CGAAAAAA
* * * * *
134076 ATTATGGAGAAGAAATCTCTATGTTTCGAAAAT-TGGGGA
128 ATTACGGAGAAGAAAACTCTATATTTCAAAAATAT-GAGA
* * * *
134115 ATTTCAAGG-AAAACTTTAAAAAATTATGAAAATGAAGGAGTTTTTAAAAACTGATTTAATATGA
1 ATTTCAAGGAAAAAATTCAAAAACTTATGAAAATGAA-GAGTTTTTAAAAACTAATTTAATATGA
* * * * *
134179 AATAAATAATAATATTTTATAAATTTTAAAAAATAAAAACCAAGAAAAATTCTC-CTG-AAGAAA
65 AATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCTC-GAAAAAAA
* * * * ** * *
134242 TTACGAAGTAGAAAACTCCATTTTTTGAAAATAAGGGA
129 TTACGGAGAAGAAAACTCTATATTTCAAAAATATGAGA
134280 ATTTCAA
1 ATTTCAA
134287 AAATTAAAAA
Statistics
Matches: 276, Mismatches: 51, Indels: 25
0.78 0.14 0.07
Matches are distributed among these distances:
165 45 0.16
166 110 0.40
167 117 0.42
168 4 0.01
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (166 bp):
ATTTCAAGGAAAAAATTCAAAAACTTATGAAAATGAAGAGTTTTTAAAAACTAATTTAATATGAA
ATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCTCGAAAAAAATT
ACGGAGAAGAAAACTCTATATTTCAAAAATATGAGA
Found at i:135449 original size:61 final size:60
Alignment explanation
Indices: 135351--135846 Score: 383
Period size: 60 Copynumber: 8.3 Consensus size: 60
135341 AGGCTTGATC
* * * * * *
135351 GAATACAGTTAAGCAGGGTAAAGTTTGATTGAGTACAGTCAAATGAGGATA-GTCTTGTCT
1 GAATACAGTCAAGAAGGGTGAAGTTTGATCGAATACAGTCAAATGAGGA-AGGTCTTGACT
* * *
135411 GAATACAATCAAGTAAGTGTGAAGTTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACC
1 GAATACAGTCAAG-AAGGGTGAAGTTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACT
* * * * *
135472 AAATACAGTCAA-AAGAGGT-AAGATTTGA-CGGAGTACAGTTAAATGAGGAAAGACTTGACT
1 GAATACAGTCAAGAAG-GGTGAAG-TTTGATC-GAATACAGTCAAATGAGGAAGGTCTTGACT
* * * * * *
135532 GAATACAGTCAAGCGAGGGTGAAATTTGAT-GAAATACAATAAAATGAGGAAGGCCTTGACC
1 GAATACAGTCAAG-AAGGGTGAAGTTTGATCG-AATACAGTCAAATGAGGAAGGTCTTGACT
* * * * * * * ***
135593 AAATACAGTCACGAGGGGT-AAGATTTGATTGAGTATAGTCAAATAAGGAAACACTTGACT
1 GAATACAGTCAAGAAGGGTGAAG-TTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACT
* * * *
135653 GAATATAGTCAAGCGAGGGTGAAATTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACC
1 GAATACAGTCAAG-AAGGGTGAAGTTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACT
* ** * *
135714 GAATATAGTTGAGAGGGGT-AAGATTTGA-CTGAGTACAGTCAAATGA--AA---CTTGACT
1 GAATACAGTCAAGAAGGGTGAAG-TTTGATC-GAATACAGTCAAATGAGGAAGGTCTTGACT
* * *
135769 GAATACAGTCAAGCGAGGGTGAA-TTTGACCGAATATAGTCAAATGAGGAAGGTCTTGA-T
1 GAATACAGTCAAG-AAGGGTGAAGTTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACT
*
135828 CGAATATAGTCAAGAAGGG
1 -GAATACAGTCAAGAAGGG
135847 CGATTTTTAT
Statistics
Matches: 341, Mismatches: 70, Indels: 51
0.74 0.15 0.11
Matches are distributed among these distances:
55 35 0.10
56 5 0.01
57 4 0.01
58 2 0.01
59 17 0.05
60 137 0.40
61 135 0.40
62 6 0.02
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.24
Consensus pattern (60 bp):
GAATACAGTCAAGAAGGGTGAAGTTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACT
Found at i:135479 original size:30 final size:30
Alignment explanation
Indices: 135443--135603 Score: 103
Period size: 30 Copynumber: 5.3 Consensus size: 30
135433 AGTTTGATCG
135443 AATACAGTCAAATGAGGAAGGTCTTGACCA
1 AATACAGTCAAATGAGGAAGGTCTTGACCA
* * **
135473 AATACAGTCAAAAGAGGTAAGAT-TTGACGG
1 AATACAGTCAAATGAGG-AAGGTCTTGACCA
* * * * **
135503 AGTACAGTTAAATGAGGAAAGACTTGACTG
1 AATACAGTCAAATGAGGAAGGTCTTGACCA
** * **
135533 AATACAGTCAAGCGAGGGTGAA-AT-TTGATGA
1 AATACAGTCAAATGA--G-GAAGGTCTTGACCA
* * *
135564 AATACAATAAAATGAGGAAGGCCTTGACCA
1 AATACAGTCAAATGAGGAAGGTCTTGACCA
135594 AATACAGTCA
1 AATACAGTCA
135604 CGAGGGGTAA
Statistics
Matches: 94, Mismatches: 30, Indels: 14
0.68 0.22 0.10
Matches are distributed among these distances:
28 3 0.03
29 3 0.03
30 65 0.69
31 19 0.20
32 1 0.01
33 3 0.03
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.20
Consensus pattern (30 bp):
AATACAGTCAAATGAGGAAGGTCTTGACCA
Found at i:135516 original size:121 final size:121
Alignment explanation
Indices: 135352--135842 Score: 604
Period size: 121 Copynumber: 4.1 Consensus size: 121
135342 GGCTTGATCG
* * * * *
135352 AATACAGTTAAGCA-GGGTAA-AGTTTGATTGAGTACAGTCAAATGAGGATAGTCTTGTCTGAAT
1 AATACAGTCAAG-AGGGGTAAGA-TTTGACTGAGTACAGTCAAATGAGGAAAGACTTGACTGAAT
* ** * *
135415 ACAATCAAGTAAGTGTGAAGTTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACCA
64 ACAGTCAAGCGAGGGTGAAATTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACCA
* * * *
135473 AATACAGTCAAAAGAGGTAAGATTTGACGGAGTACAGTTAAATGAGGAAAGACTTGACTGAATAC
1 AATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGAGGAAAGACTTGACTGAATAC
* * *
135538 AGTCAAGCGAGGGTGAAATTTGAT-GAAATACAATAAAATGAGGAAGGCCTTGACCA
66 AGTCAAGCGAGGGTGAAATTTGATCG-AATACAGTCAAATGAGGAAGGTCTTGACCA
* * * * * *
135594 AATACAGTCACGAGGGGTAAGATTTGATTGAGTATAGTCAAATAAGGAAACACTTGACTGAATAT
1 AATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGAGGAAAGACTTGACTGAATAC
*
135659 AGTCAAGCGAGGGTGAAATTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACCG
66 AGTCAAGCGAGGGTGAAATTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACCA
* **
135715 AATATAGTTGAGAGGGGTAAGATTTGACTGAGTACAGTCAAAT---G-AA-ACTTGACTGAATAC
1 AATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGAGGAAAGACTTGACTGAATAC
* * * *
135775 AGTCAAGCGAGGGTG-AATTTGACCGAATATAGTCAAATGAGGAAGGTCTTGATCG
66 AGTCAAGCGAGGGTGAAATTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACCA
*
135830 AATATAGTCAAGA
1 AATACAGTCAAGA
135843 AGGGCGATTT
Statistics
Matches: 323, Mismatches: 43, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
115 48 0.15
116 28 0.09
117 2 0.01
118 1 0.00
120 2 0.01
121 240 0.74
122 2 0.01
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (121 bp):
AATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGAGGAAAGACTTGACTGAATAC
AGTCAAGCGAGGGTGAAATTTGATCGAATACAGTCAAATGAGGAAGGTCTTGACCA
Found at i:141072 original size:164 final size:165
Alignment explanation
Indices: 140720--141121 Score: 403
Period size: 164 Copynumber: 2.4 Consensus size: 165
140710 GTTTAAAAAT
140720 AATATTTGATGAATTTTAAAAATTTGAAATCGAGAAAAATCTCTCCGAAAATATTTATGGAGTAG
1 AATATTTGATGAATTTTAAAAATTTGAAATCGAGAAAAATCTCTCCGAAAATATTTATGGAGTAG
** *
140785 AAAACTCAGTTTTTCGAAAATAGGAAGATTTCGAAGAAAAAATTCAAAACTCATGAAAATAATTG
66 AAAACTCAACTTTTCGAAAATAGG-AGATTTCAAAGAAAAAATTCAAAACTCATGAAAATAATTG
* ** * **
140850 CATTTTTTGAAACTAGTTTAATAGGAGTTTAATGAC
130 AATTTTTCAAAACTAGTTTAATAGGAATCAAATGAC
* * * *
140886 AATATTAGA-GAAATTCTAAAAATTTTAAATCGA-AGAAAATC-CT-CTAAAATAATTTATGGAG
1 AATATTTGATG-AATTTTAAAAATTTGAAATCGAGA-AAAATCTCTCCGAAAAT-ATTTATGGAG
*
140947 TAGAAAACTCAACTTTTCGAGAAA-AGG-GCATTTCAAAG-AAAAATTCTAAAACTTATGAAAAT
63 TAGAAAACTCAACTTTTCGA-AAATAGGAG-ATTTCAAAGAAAAAATTC-AAAACTCATGAAAAT
* *
141009 GAATT-AATTTTTCAAAACT-GATTTAATATGAATCAAATGAT
125 -AATTGAATTTTTCAAAACTAG-TTTAATAGGAATCAAATGAC
* * * * * * * *
141050 GATATTTGATGAGTTTTAAAAA-TTAAAAACAAAGAAAAATCTC-CCTGAAAAAAATTTACGAAG
1 AATATTTGATGAATTTTAAAAATTTGAAATC-GAGAAAAATCTCTCC-G-AAAATATTTATGGAG
141113 TAGAAAACT
63 TAGAAAACT
141122 TCGTATTTCA
Statistics
Matches: 194, Mismatches: 27, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
163 16 0.08
164 77 0.40
165 43 0.22
166 54 0.28
167 4 0.02
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (165 bp):
AATATTTGATGAATTTTAAAAATTTGAAATCGAGAAAAATCTCTCCGAAAATATTTATGGAGTAG
AAAACTCAACTTTTCGAAAATAGGAGATTTCAAAGAAAAAATTCAAAACTCATGAAAATAATTGA
ATTTTTCAAAACTAGTTTAATAGGAATCAAATGAC
Found at i:141203 original size:168 final size:165
Alignment explanation
Indices: 140713--141550 Score: 485
Period size: 166 Copynumber: 5.1 Consensus size: 165
140703 TATGGGAGTT
* * * * *
140713 TAAA-AATAATATTTGATGAATTTTAAAAATTTGAAATC-GAGAAAAATCTCTCC-G-AAAATAT
1 TAAATAATAATATTTCAT-AATTTTAAAAA-TTAAAAACAAAGAAAAATCTC-CCTGAAAAAAAT
* * * *
140774 TTATGGAGTAGAAAAC-TCAGTTTTTC-GAAAATAG-GAAGATTTCGAAGAAAAAATTC-AAAAC
63 TTATGAAGTAGAAAACTTCA-TATTTCAGAAACTAGAG-A-ATTTC-AAGGAAAAATTCAAAAAC
* ** * * *
140835 TCATGAAAAT-AATTGCA-TTTTTTGAAACTAGTTTAATAGGAGT
124 TCATGAAAATGAA-AG-AGTTTTTAAAAACTAATTTAATATGA-A
* * * ** * * * * * * *
140878 TTAATGACAATATTAGAGAAATTCTAAAAATTTTAAATCGAAG-AAAATC-CTCT-AAAATAATT
1 TAAATAATAATATTTCA-TAATTTTAAAAA-TTAAAAACAAAGAAAAATCTCCCTGAAAAAAATT
* * * * * *
140940 TATGGAGTAGAAAAC-TCA-ACTTTTCGAGAAA--AGGGCATTTCAAAGAAAAATTCTAAAACTT
64 TATGAAGTAGAAAACTTCATA--TTTC-AGAAACTAGAGAATTTCAAGGAAAAATTCAAAAACTC
** * * *
141001 ATGAAAATGAATTAATTTTTCAAAACTGATTTAATATGAA
126 ATGAAAATGAAAGAGTTTTTAAAAACTAATTTAATATGAA
* * * *
141041 TCAAATGATGATATTTGATGAGTTTTAAAAATTAAAAACAAAGAAAAATCTCCCTGAAAAAAATT
1 T-AAATAATAATATTTCAT-AATTTTAAAAATTAAAAACAAAGAAAAATCTCCCTGAAAAAAATT
* * * *
141106 TACGAAGTAGAAAACTTCGTATTTCAGAAAC-AGGATAATTTCAAGGAAATATTTCAAAAACTCA
64 TATGAAGTAGAAAACTTCATATTTCAGAAACTA-GAGAATTTCAAGGAAA-AATTCAAAAACTCA
** * **
141170 TGAAAATGAAAGAGTTTTGGAAAACTAATTTAATGTGGGT
127 TGAAAATGAAAGAGTTTTTAAAAACTAATTTAATAT-GAA
* * * *
141210 TAAATCAA-AAAATTTCATAAATTTTAAAAATTAAAAACCAAGAGAAAT-TCCTTCGAAAAAAA-
1 TAAAT-AATAATATTTCAT-AATTTTAAAAATTAAAAACAAAGAAAAATCTCCCT-GAAAAAAAT
* * * * * * * *
141272 TTATGGAGAATAAATCTCCATATTTCGGAAACTAGAGAATTTCAAGGAAAAAATTCAAACATTCA
63 TTATGAAGTAGAAAACTTCATATTTCAGAAACTAGAGAATTTCAAGG-AAAAATTCAAAAACTCA
* *
141337 TGAAAATGAAGGAGTTTTTAAAAAC-AGATTTGATATGAAA
127 TGAAAATGAAAGAGTTTTTAAAAACTA-ATTTAATATG-AA
* *
141377 TAAATAATAATATTTTATAATTTTAAAAATTAAAAACTAAGAAAAATTCTCCC-G-AAAAAATTT
1 TAAATAATAATATTTCATAATTTTAAAAATTAAAAACAAAGAAAAA-TCTCCCTGAAAAAAATTT
* * *
141440 ATGAAGTAGAAAACTTCATTTTTCCA-AAA-TAAAGGAATTTC----AAAAATTGAAAAACTCAT
65 ATGAAGTAGAAAACTTCATATTT-CAGAAACTAGA-GAATTTCAAGGAAAAATTCAAAAACTCAT
**** * ** *
141499 GAAAATTTGTGAATTTTTGCAAACTGATTTAATATGAA
128 GAAAATGAAAGAGTTTTTAAAAACTAATTTAATATGAA
*
141537 TTAAATGATAATAT
1 -TAAATAATAATAT
141551 ATGAAGAATT
Statistics
Matches: 527, Mismatches: 108, Indels: 80
0.74 0.15 0.11
Matches are distributed among these distances:
160 2 0.00
161 53 0.10
163 21 0.04
164 67 0.13
165 53 0.10
166 120 0.23
167 115 0.22
168 93 0.18
169 3 0.01
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.31
Consensus pattern (165 bp):
TAAATAATAATATTTCATAATTTTAAAAATTAAAAACAAAGAAAAATCTCCCTGAAAAAAATTTA
TGAAGTAGAAAACTTCATATTTCAGAAACTAGAGAATTTCAAGGAAAAATTCAAAAACTCATGAA
AATGAAAGAGTTTTTAAAAACTAATTTAATATGAA
Found at i:145236 original size:31 final size:31
Alignment explanation
Indices: 145193--145260 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
145183 TGAAGTTATA
*
145193 TATATACGTTCTTAAAGAAGAATAAAATGGT
1 TATATACATTCTTAAAGAAGAATAAAATGGT
145224 TATATACATTCTTAAAGAAGAATAAAATGGT
1 TATATACATTCTTAAAGAAGAATAAAATGGT
145255 TATATA
1 TATATA
145261 AGAACCTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (31 bp):
TATATACATTCTTAAAGAAGAATAAAATGGT
Found at i:155044 original size:19 final size:19
Alignment explanation
Indices: 155001--155054 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
154991 CACATCTAGA
*
155001 TGTATCGATACATTATCCTT
1 TGTATCGATACATGAT-CTT
155021 TGTATCGATACATGAT-TAT
1 TGTATCGATACATGATCT-T
*
155040 TGTATCGATATATGA
1 TGTATCGATACATGA
155055 AACTGGCAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 1 0.03
19 15 0.48
20 15 0.48
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (19 bp):
TGTATCGATACATGATCTT
Found at i:155120 original size:33 final size:32
Alignment explanation
Indices: 155083--155147 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
155073 TATCACTGTT
155083 TGTATCGATACATG-GCACATTGTATCGATACAA
1 TGTATCGATACATGAG-A-ATTGTATCGATACAA
155116 TGTATCGATACATGAAGAATTGTATCGATACA
1 TGTATCGATACATG-AGAATTGTATCGATACA
155148 TTGTCCCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATACAA
Found at i:155121 original size:13 final size:13
Alignment explanation
Indices: 155103--155127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
155093 CATGGCACAT
155103 TGTATCGATACAA
1 TGTATCGATACAA
155116 TGTATCGATACA
1 TGTATCGATACA
155128 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:160348 original size:13 final size:13
Alignment explanation
Indices: 160330--160355 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
160320 TACACCAAGT
160330 ATGTATCGATACA
1 ATGTATCGATACA
160343 ATGTATCGATACA
1 ATGTATCGATACA
160356 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:160353 original size:32 final size:33
Alignment explanation
Indices: 160312--160375 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
160302 TAGCCAAACT
**
160312 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
160344 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
160376 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:164978 original size:19 final size:19
Alignment explanation
Indices: 164938--165008 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
164928 ATCTAGATGC
* *
164938 ATCGATACATTATGCTTTGT
1 ATCGATACATGAT-CATTGT
164958 ATCGATACATGATCATTGT
1 ATCGATACATGATCATTGT
164977 ATCGATACATGCA-CAATTGT
1 ATCGATACATG-ATC-ATTGT
*
164997 ATGGATACATGA
1 ATCGATACATGA
165009 AACTGGCAGT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
19 18 0.39
20 28 0.61
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (19 bp):
ATCGATACATGATCATTGT
Found at i:165091 original size:32 final size:32
Alignment explanation
Indices: 165055--165132 Score: 156
Period size: 32 Copynumber: 2.4 Consensus size: 32
165045 TACATGGCAC
165055 ATTGTATCGATACAATTATCAATACATGAAGA
1 ATTGTATCGATACAATTATCAATACATGAAGA
165087 ATTGTATCGATACAATTATCAATACATGAAGA
1 ATTGTATCGATACAATTATCAATACATGAAGA
165119 ATTGTATCGATACA
1 ATTGTATCGATACA
165133 TTGTCCCAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (32 bp):
ATTGTATCGATACAATTATCAATACATGAAGA
Found at i:170074 original size:13 final size:13
Alignment explanation
Indices: 170056--170081 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
170046 CAATTTTTTG
170056 TGTATCGATACAT
1 TGTATCGATACAT
170069 TGTATCGATACAT
1 TGTATCGATACAT
170082 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:170146 original size:21 final size:21
Alignment explanation
Indices: 170120--170195 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
170110 CTGCCAAGAA
170120 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
170141 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
170161 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
170182 ATGTATCGATACAT
1 ATGTATCGATACAT
170196 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:170165 original size:20 final size:20
Alignment explanation
Indices: 170140--170213 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
170130 ACATCTTTTT
170140 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
170160 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
170181 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
170201 CATGTATCGATAC
1 CATGTATCGATAC
170214 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:170177 original size:41 final size:41
Alignment explanation
Indices: 170120--170213 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
170110 CTGCCAAGAA
170120 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
170161 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
170202 ATGTATCGATAC
1 ATGTATCGATAC
170214 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:176602 original size:21 final size:21
Alignment explanation
Indices: 176573--176617 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
176563 AAGTTTTCAT
*
176573 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
176593 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
176615 TTT
1 TTT
176618 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:178849 original size:13 final size:13
Alignment explanation
Indices: 178831--178856 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
178821 CAATTTTTTG
178831 TGTATCGATACAT
1 TGTATCGATACAT
178844 TGTATCGATACAT
1 TGTATCGATACAT
178857 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:178921 original size:21 final size:21
Alignment explanation
Indices: 178895--178970 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
178885 CTGCCAAGAA
178895 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
178916 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
178936 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
178957 ATGTATCGATACAT
1 ATGTATCGATACAT
178971 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:178940 original size:20 final size:20
Alignment explanation
Indices: 178915--178988 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
178905 ACATCTTTTT
178915 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
178935 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
178956 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
178976 CATGTATCGATAC
1 CATGTATCGATAC
178989 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:178952 original size:41 final size:41
Alignment explanation
Indices: 178895--178988 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
178885 CTGCCAAGAA
178895 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
178936 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
178977 ATGTATCGATAC
1 ATGTATCGATAC
178989 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:185624 original size:19 final size:20
Alignment explanation
Indices: 185600--185649 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
185590 CAGTTTCATG
185600 TATCGATACAATG-A-ACATC
1 TATCGATACAATGCATA-ATC
*
185619 TATCGATACAATGCATAATG
1 TATCGATACAATGCATAATC
185639 TATCGATACAA
1 TATCGATACAA
185650 CTGGGGGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.46
20 14 0.50
21 1 0.04
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (20 bp):
TATCGATACAATGCATAATC
Found at i:185644 original size:20 final size:19
Alignment explanation
Indices: 185596--185649 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
185586 CTACCAGTTT
185596 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
185615 CATCTATCGATACAATGCATA
1 CATGTATCGATACAATG-A-A
185636 -ATGTATCGATACAA
1 CATGTATCGATACAA
185650 CTGGGGGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 16 0.52
20 14 0.45
21 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.28
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:195499 original size:19 final size:18
Alignment explanation
Indices: 195443--195500 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 18
195433 ACTGTCAGTT
195443 TCATGTATCGATACAATTG
1 TCATGTATCGATACAA-TG
*
195462 TCCATGTATCGATATAATG
1 T-CATGTATCGATACAATG
*
195481 ATCATGTATCAATACAATG
1 -TCATGTATCGATACAATG
195500 T
1 T
195501 ATCGATGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 1 0.03
19 18 0.53
20 15 0.44
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (18 bp):
TCATGTATCGATACAATG
Found at i:202541 original size:9 final size:9
Alignment explanation
Indices: 202527--202560 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
202517 TCTGAGTCAC
202527 CATCATTAT
1 CATCATTAT
202536 CATCATTAT
1 CATCATTAT
202545 CATC-TTCAT
1 CATCATT-AT
202554 CATCATT
1 CATCATT
202561 GATGGTTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (9 bp):
CATCATTAT
Found at i:203869 original size:20 final size:20
Alignment explanation
Indices: 203823--203876 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
203813 GTTAGAAGCA
*
203823 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCACC
*
203843 ATTTATCGATACAATGT-ACC
1 ATGTATCGATACAAT-TCACC
*
203863 ATGTATCGACACAA
1 ATGTATCGATACAA
203877 ACAGTGGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATTCACC
Found at i:203950 original size:19 final size:19
Alignment explanation
Indices: 203904--203957 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
203894 ACTGCCAGTT
*
203904 TCATGTATCGATACAATTG
1 TCATGTATTGATACAATTG
203923 TCAATGTATTGATACAA-TG
1 TC-ATGTATTGATACAATTG
203942 ATCATGTATTGATACA
1 -TCATGTATTGATACA
203958 TATGGGTGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (19 bp):
TCATGTATTGATACAATTG
Found at i:205907 original size:2 final size:2
Alignment explanation
Indices: 205900--205928 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
205890 TTTGAGTTGG
205900 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
205929 CGTATTATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:206951 original size:20 final size:20
Alignment explanation
Indices: 206897--206970 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 20
206887 TTTTACCCAG
*
206897 ATGTATCGATACATCGAAAA
1 ATGTATCGATACATTGAAAA
*
206917 ATGTATCAATACATTGAAAA
1 ATGTATCGATACATTGAAAA
****
206937 ATGTATCGATACATTTTGCA
1 ATGTATCGATACATTGAAAA
206957 ATGTATCGATACAT
1 ATGTATCGATACAT
206971 GTATGAATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:207007 original size:20 final size:19
Alignment explanation
Indices: 206936--207013 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 19
206926 TACATTGAAA
206936 AATGTATCGATACATTTTGC
1 AATGTATCGATACATTTT-C
* *
206956 AATGTATCGATACATGTATG
1 AATGTATCGATACAT-TTTC
* *
206976 AATATATTGATACATTCTTC
1 AATGTATCGATACATT-TTC
*
206996 AATGTATGGATACATTTT
1 AATGTATCGATACATTTT
207014 GTCCTTTTAC
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
19 3 0.06
20 43 0.90
21 2 0.04
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (19 bp):
AATGTATCGATACATTTTC
Found at i:207131 original size:71 final size:70
Alignment explanation
Indices: 206956--207132 Score: 183
Period size: 71 Copynumber: 2.5 Consensus size: 70
206946 TACATTTTGC
* * * * * * ** * *
206956 AATGTATCGATACATGTATGAATATATTGATACATTCTTCAATGTATGGATACATTTTGTCCTTT
1 AATGTATCGATACATTTTTCAATGTA-TGATACATGCATCAATGTATCAATACATTCTATCCTTT
*
207021 TACCTA
65 TACCCA
* * * *
207027 AATGTATCGATACATTTTTCAACGTATCAATACATGCATGAATGTATCAATACATTCTATCTTTT
1 AATGTATCGATACATTTTTCAATGTAT-GATACATGCATCAATGTATCAATACATTCTATCCTTT
*
207092 TTCCCA
65 TACCCA
207098 AATGTATCGATACATTTTTCAATGTACTGATACAT
1 AATGTATCGATACATTTTTCAATGTA-TGATACAT
207133 CTAGTTAAAA
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
70 1 0.01
71 84 0.98
72 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (70 bp):
AATGTATCGATACATTTTTCAATGTATGATACATGCATCAATGTATCAATACATTCTATCCTTTT
ACCCA
Found at i:221044 original size:21 final size:18
Alignment explanation
Indices: 221017--221099 Score: 85
Period size: 19 Copynumber: 4.2 Consensus size: 18
221007 TCTTTCGTAC
221017 AAAAAAAAACAAAAAAACCA
1 AAAAAAAAACAAAAAAA--A
221037 AGAAAAAAAACAAAACAAAA
1 A-AAAAAAAACAAAA-AAAA
*
221057 AACAAAAAACAAAAAAAA
1 AAAAAAAAACAAAAAAAA
*
221075 ATAAAAGAAACAAACAAACAA
1 A-AAAAAAAACAAA-AAA-AA
221096 AAAA
1 AAAA
221100 GAGGTCCAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.09
19 22 0.40
20 9 0.16
21 16 0.29
22 3 0.05
ACGTcount: A:0.84, C:0.12, G:0.02, T:0.01
Consensus pattern (18 bp):
AAAAAAAAACAAAAAAAA
Found at i:221060 original size:33 final size:34
Alignment explanation
Indices: 221020--221099 Score: 103
Period size: 33 Copynumber: 2.4 Consensus size: 34
221010 TTCGTACAAA
* *
221020 AAAAAACAAAAAAACCAAGAAAAAA-AACA-AAAC
1 AAAAAACAAAAAAA-CAAAAAAAAATAAAAGAAAC
221053 AAAAAAC-AAAAAACAAAAAAAAATAAAAGAAAC
1 AAAAAACAAAAAAACAAAAAAAAATAAAAGAAAC
221086 AAACAAACAAAAAA
1 AAA-AAACAAAAAA
221100 GAGGTCCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
31 9 0.22
32 9 0.22
33 14 0.34
34 4 0.10
35 5 0.12
ACGTcount: A:0.84, C:0.12, G:0.03, T:0.01
Consensus pattern (34 bp):
AAAAAACAAAAAAACAAAAAAAAATAAAAGAAAC
Found at i:221070 original size:26 final size:25
Alignment explanation
Indices: 221017--221099 Score: 89
Period size: 25 Copynumber: 3.2 Consensus size: 25
221007 TCTTTCGTAC
*
221017 AAAAAAAAACAAAAAAACCAAGAAA-A
1 AAAAAAAAAC-AAAAAA-CAAAAAACA
*
221043 AAAACAAAACAAAAAACAAAAAACA
1 AAAAAAAAACAAAAAACAAAAAACA
221068 AAAAAAAATA-AAAGAAACAAACAAACA
1 AAAAAAAA-ACAAA-AAACAAA-AAACA
221095 AAAAA
1 AAAAA
221100 GAGGTCCAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
24 6 0.12
25 17 0.34
26 17 0.34
27 10 0.20
ACGTcount: A:0.84, C:0.12, G:0.02, T:0.01
Consensus pattern (25 bp):
AAAAAAAAACAAAAAACAAAAAACA
Found at i:221094 original size:41 final size:40
Alignment explanation
Indices: 221020--221099 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
221010 TTCGTACAAA
* *
221020 AAAAAACAAAAAAACCAAGAAAAAAAACAAAACAAAAAAC
1 AAAAAACAAAAAAACAAAAAAAAAAAACAAAACAAAAAAC
221060 AAAAAACAAAAAAA-AATAAAAGAAACAAAC-AAACAAAAAA
1 AAAAAACAAAAAAACAA-AAAA-AAA-AAACAAAACAAAAAA
221100 GAGGTCCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
39 1 0.03
40 17 0.49
41 13 0.37
42 4 0.11
ACGTcount: A:0.84, C:0.12, G:0.03, T:0.01
Consensus pattern (40 bp):
AAAAAACAAAAAAACAAAAAAAAAAAACAAAACAAAAAAC
Found at i:221098 original size:23 final size:22
Alignment explanation
Indices: 221015--221099 Score: 79
Period size: 23 Copynumber: 3.9 Consensus size: 22
221005 CGTCTTTCGT
221015 ACAAAAAA-AAAC--AAAAAAA
1 ACAAAAAACAAACAAAAAAAAA
* *
221034 CCAAGAAAAAAAACAAAACAAAAA
1 ACAA-AAAACAAACAAAA-AAAAA
221058 ACAAAAAACAAA-AAAAAATAAA
1 ACAAAAAACAAACAAAAAA-AAA
*
221080 AGAAACAAACAAACAAAAAA
1 ACAAA-AAACAAACAAAAAA
221100 GAGGTCCAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
19 3 0.06
20 4 0.07
21 6 0.11
22 11 0.20
23 16 0.30
24 14 0.26
ACGTcount: A:0.84, C:0.13, G:0.02, T:0.01
Consensus pattern (22 bp):
ACAAAAAACAAACAAAAAAAAA
Found at i:221101 original size:19 final size:18
Alignment explanation
Indices: 221015--221099 Score: 75
Period size: 18 Copynumber: 4.6 Consensus size: 18
221005 CGTCTTTCGT
*
221015 ACAAAAAAAAACAAAAAA
1 ACAAAAAAAAACAAACAA
* *
221033 ACCAAGAAAAA-AAACAAA
1 ACAAAAAAAAACAAAC-AA
221051 ACAAAAAACAAA-AAACAA
1 ACAAAAAA-AAACAAACAA
* *
221069 AAAAAAATAAAAGAAACAA
1 ACAAAAA-AAAACAAACAA
221088 ACAAACAAAAAA
1 ACAAA-AAAAAA
221100 GAGGTCCAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.05
18 28 0.51
19 22 0.40
20 2 0.04
ACGTcount: A:0.84, C:0.13, G:0.02, T:0.01
Consensus pattern (18 bp):
ACAAAAAAAAACAAACAA
Found at i:222353 original size:28 final size:28
Alignment explanation
Indices: 222313--222970 Score: 572
Period size: 28 Copynumber: 22.5 Consensus size: 28
222303 ACTTCATATC
* * *
222313 TTCAAAGCCCACAGGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
222341 TTCAAAACTCACAAGTCAGTGGCGCCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
222369 TTCAAAGCCCACAAGTCAGTGGCGTACCCT
1 TTCAAAGCCCACAAGTCAGTGGC--ACCCT
* *
222399 TTCAAAGCCCACATAAGTCGGTGGCAACTCTT
1 TTCAAAGCCCAC--AAGTCAGTGGC-AC-CCT
** *
222431 TTCAAAGCCCACAAGTTTGTGGCATCTCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* * *
222460 TTAAAAGCCCACAAGTTTA-TGGCATCTCT
1 TTCAAAGCCCACAAG-TCAGTGGCA-CCCT
*
222489 TTAAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
222517 TTCAAAGCCCACACAAGTCGGTGGCAACTCTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
* *
222549 TTCAAAGCCCACAAGTCAATGGCA-TCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * ** *
222576 CTTCAAAAGACCATAAATTGGTGGCATAGCCT
1 -TTC-AAAGCCCACAAGTCAGTGGC--ACCCT
* *
222608 TTCAAAGCTCACAAGTC-GATGGCACCGT
1 TTCAAAGCCCACAAGTCAG-TGGCACCCT
* * *
222636 TTCAAAGCCCACATAAGTCGGTGGTAACTCTT
1 TTCAAAGCCCAC--AAGTCAGTGG-CAC-CCT
*
222668 TTCAAAGCCCACAAGTCAGTGGCA-TCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
222695 CTTCAAAAGCCCACAAGTCAGTGGCACCCT
1 -TTC-AAAGCCCACAAGTCAGTGGCACCCT
* *
222725 TTCAAAGCCCACACAAGTCAGTGGTAACTCTT
1 TTCAAAG-CC-CACAAGTCAGTGG-CAC-CCT
* *
222757 TTCAAAGCCCACAAGTCAGTGGTA-TCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
222784 CTTCAAAACCCACACAAATCAGTGGCACCCT
1 -TTC-AAAGCC-CACAAGTCAGTGGCACCCT
* *
222815 TCCAAAGCCCACAAGTTAGTGGCA-CCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
222842 TTCCAAAGCCCACAAGTTAGTGGCACCTT
1 TT-CAAAGCCCACAAGTCAGTGGCACCCT
222871 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
222899 TTCATAGCCCACAAGTCAGTGGTACCCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
222927 TTCAAAGCCCACAAGTCAGTGGCATCCCCT
1 TTCAAAGCCCACAAGTCAGTGGCA--CCCT
222957 TTCAAAGCCCACAA
1 TTCAAAGCCCACAA
222971 AAGTCGATGA
Statistics
Matches: 520, Mismatches: 72, Indels: 74
0.78 0.11 0.11
Matches are distributed among these distances:
27 7 0.01
28 187 0.36
29 106 0.20
30 143 0.28
31 19 0.04
32 58 0.11
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.22
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:222672 original size:119 final size:117
Alignment explanation
Indices: 222313--222970 Score: 596
Period size: 119 Copynumber: 5.6 Consensus size: 117
222303 ACTTCATATC
* * * * **
222313 TTCAAAGCCCACAGGTCAGTGGCATCTTTTC-AAA-ACTCAC-AAGTCAGTGGCGCCCTTTCAAA
1 TTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGAC-CACAAATTGA-TGGCATCCTTTCAAA
222375 GCCCACAAGTCAGTGGCGTACCCTTTCAAAGCCCACATAAGTCGGTGGCAACTCTT
64 GCCCACAAGTCAGTGGC--ACCCTTTCAAAGCCCACATAAGTCGGTGGCAACTCTT
** * * * * *
222431 TTCAAAGCCCACAAGTTTGTGGCATCTCTTTAAAAGCCCACAAGTTTATGGCATCTCTTTAAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGACCACAAATTGATGGCATC-CTTTCAAAG
*
222496 CCCACAAGTCAGTGGCACCCTTTCAAAGCCCACACAAGTCGGTGGCAACTCTT
65 CCCACAAGTCAGTGGCACCCTTTCAAAGCCCACATAAGTCGGTGGCAACTCTT
* * *
222549 TTCAAAGCCCACAAGTCAATGGCATCTCTTCAAAAGACCATAAATTGGTGGCATAGCCTTTCAAA
1 TTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGACCACAAATTGATGGCAT--CCTTTCAAA
* * *
222614 GCTCACAAGTC-GATGGCACCGTTTCAAAGCCCACATAAGTCGGTGGTAACTCTT
64 GCCCACAAGTCAG-TGGCACCCTTTCAAAGCCCACATAAGTCGGTGGCAACTCTT
* * * *
222668 TTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGCCCAC-AAGTCAGTGGCACCCTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGACCACAAATTGA-TGGCATCCTTTCAAAG
* * * * *
222732 CCCACACAAGTCAGTGGTAACTCTTTTCAAAGCCCAC--AAGTCAGTGG-TA-TCTC
65 -CC-CACAAGTCAGTGG-CAC-CCTTTCAAAGCCCACATAAGTCGGTGGCAACTCTT
* * * * * *
222785 TTCAAAACCCACACAAATCAGTGGCA-CCCTTCCAAAGCCCACAAGTT-AGTGGCA-CCTTTCCA
1 TTC-AAAGCC-CACAAGTCAGTGGCATCTCTTCAAAAGACCACAAATTGA-TGGCATCCTTT-CA
* * * *
222847 AAGCCCACAAGTTAGTGGCACCTTTTCAAAGCCCAC--AAGTCAGTGGC-AC-CCT
62 AAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACATAAGTCGGTGGCAACTCTT
* * * * * * *
222899 TTCATAGCCCACAAGTCAGTGGTACCCCTTC-AAAGCCCAC-AAGTCAGTGGCATCCCCTTTCAA
1 TTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGACCACAAATTGA-TGGCAT--CCTTTCAA
222962 AGCCCACAA
63 AGCCCACAA
222971 AAGTCGATGA
Statistics
Matches: 460, Mismatches: 56, Indels: 52
0.81 0.10 0.09
Matches are distributed among these distances:
111 2 0.00
112 29 0.06
113 10 0.02
114 42 0.09
115 7 0.02
116 12 0.03
117 23 0.05
118 144 0.31
119 145 0.32
120 32 0.07
121 14 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.22
Consensus pattern (117 bp):
TTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGACCACAAATTGATGGCATCCTTTCAAAGC
CCACAAGTCAGTGGCACCCTTTCAAAGCCCACATAAGTCGGTGGCAACTCTT
Found at i:223131 original size:45 final size:47
Alignment explanation
Indices: 223080--223245 Score: 138
Period size: 48 Copynumber: 3.5 Consensus size: 47
223070 AAGTCCGATA
* *
223080 TCGCTGGCATTGAATCAGCATATTG-GCACCTTT-ATTAGCTCAATG
1 TCGCTGGCATTGAATCAGCACATTGTCCACCTTTCATTAGCTCAATG
* * *
223125 TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
1 TCGCTGGCATTGAATCAGCACATTGTCCACCTTT-CATTAGCTCAATG
** * * * ** * *
223173 TCGCCAGCCTTGAATTAGCACATTATCCATTTTTCCCTTAGCTCGATG
1 TCGCTGGCATTGAATCAGCACATTGTCCACCTTT-CATTAGCTCAATG
* * **
223221 TCGTTGGCCTTGAATTGGCACATTG
1 TCGCTGGCATTGAATCAGCACATTG
223246 GCACTCCTCT
Statistics
Matches: 102, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
45 23 0.23
46 6 0.06
48 73 0.72
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (47 bp):
TCGCTGGCATTGAATCAGCACATTGTCCACCTTTCATTAGCTCAATG
Found at i:223231 original size:48 final size:48
Alignment explanation
Indices: 223114--223244 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 48
223104 GGCACCTTTA
* *
223114 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTGAATTAGCACATTATCCACTTTTCCC
** *
223162 TTAGCTCAATGTCGCCAGCCTTGAATTAGCACATTATCCATTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTGAATTAGCACATTATCCACTTTTCCC
* * *
223210 TTAGCTCGATGTCGTTGGCCTTGAATTGGCACATT
1 TTAGCTCAATGTCGCTGGCCTTGAATTAGCACATT
223245 GGCACTCCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (48 bp):
TTAGCTCAATGTCGCTGGCCTTGAATTAGCACATTATCCACTTTTCCC
Done.