Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold128
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1835488
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 11 of 11
Found at i:1814608 original size:20 final size:20
Alignment explanation
Indices: 1814583--1814637 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
1814573 TTTTCACAAT
1814583 TTGTATCGATACATTCTTCA
1 TTGTATCGATACATTCTTCA
**
1814603 TTGTATCGATATTTTCTTCA
1 TTGTATCGATACATTCTTCA
*
1814623 TTGTATCCATACATT
1 TTGTATCGATACATT
1814638 TTGGGTTTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.49
Consensus pattern (20 bp):
TTGTATCGATACATTCTTCA
Found at i:1814720 original size:52 final size:50
Alignment explanation
Indices: 1814604--1814740 Score: 161
Period size: 50 Copynumber: 2.7 Consensus size: 50
1814594 CATTCTTCAT
* * * * *
1814604 TGTATCGATA-TTTTCTTCATTGTATCCATACATTTTGGGTTTCACCCAGA
1 TGTATCGATACATTT-TTCATTGTATCGATACATTCTAGGTTTCACCCAAA
*
1814654 TGTATCGATACATTTTTCATTGTATTGATACATTCTAGGTTTCACCCAAA
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTAGGTTTCACCCAAA
*
1814704 TGTATCTCGATACATTTCTCAATT-TATCGATACATTC
1 TGTA--TCGATACATTTTTC-ATTGTATCGATACATTC
1814741 AAGCATTTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
50 44 0.59
51 3 0.04
52 25 0.33
53 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.43
Consensus pattern (50 bp):
TGTATCGATACATTTTTCATTGTATCGATACATTCTAGGTTTCACCCAAA
Found at i:1817372 original size:78 final size:78
Alignment explanation
Indices: 1817097--1817538 Score: 340
Period size: 79 Copynumber: 5.6 Consensus size: 78
1817087 TCATTCATGT
* * * * * * * *
1817097 TTTTATTTCTAAAACACCTATTTTCGACCATTGGGGATACTCCAACCCCATTATTTC-CAAAGGG
1 TTTTATTTCCAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCTGAGA-GG
*
1817161 ATACTTCAACCTCGG
65 ATAC-TCAACCTCAG
** * *
1817176 TTTTATTTCCAAAACATTAATTTTCC-CAAATCAGGGATACTCCAACCCCATTATTT-TCGAGGG
1 TTTTATTTCCAAAACATCGATTTTCCAC-AATCGGGGATACTCCAACCCCATTATTTCT-GAGAG
* *
1817239 GATACTCTAACCCCAA
64 GATACTC-AACCTCAG
* * * * *
1817255 TTTTATTTCTAAAATATCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCTGAGACGA
1 TTTTATTTCCAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCTGAGAGGA
*
1817320 TACTCAAACTCAG
66 TACTCAACCTCAG
** * *
1817333 TTTTATTTCCAAAACATCGATTTTCCATTATCGGGGATACTCTAACCCCATTATTTTTGAG-GAG
1 TTTTATTTCCAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCTGAGAG-G
* *
1817397 ACACTCCAACCT-TG
65 ATACT-CAACCTCAG
* * * * * * * * *
1817411 ATTTTATTTCTAAAATATCAATTTTTCACAATTGGGGATACGCCAACCCTATTATTT-TAGAAAT
1 -TTTTATTTCCAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCT-GAGAG
*
1817475 GATACTCTAATCC-CGG
64 GATACTC-AA-CCTCAG
** * * * * *
1817491 TTTTATTTTTAGAACACCAATTTTCCACTATCAGGGATACTCCAACCC
1 TTTTATTTCCAAAACATCGATTTTCCACAATCGGGGATACTCCAACCC
1817539 TGGTTTTATT
Statistics
Matches: 288, Mismatches: 61, Indels: 28
0.76 0.16 0.07
Matches are distributed among these distances:
78 69 0.24
79 213 0.74
80 6 0.02
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.35
Consensus pattern (78 bp):
TTTTATTTCCAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCTGAGAGGA
TACTCAACCTCAG
Found at i:1817479 original size:157 final size:157
Alignment explanation
Indices: 1817097--1817538 Score: 496
Period size: 157 Copynumber: 2.8 Consensus size: 157
1817087 TCATTCATGT
* * * * * **
1817097 TTTTATTTCTAAAACACCTA-TTTTCGACCATTGGGGATACTCCAACCCCATTATTTCCA-AAGG
1 TTTTATTTCTAAAATATCAATTTTTC-ACAATTGGGGATACTCCAACCCCATTATTTCTAGAAAC
* * *
1817160 GATACTTCAACCTCGGTTTTATTTCCAAAACATTAATTTTCCCAAATCAGGGATACTCCAACCCC
65 GATAC-TCAAACTCGGTTTTATTTCCAAAACATCAATTTT-CCATATCAGGGATACTCCAACCCC
* * *
1817225 ATTATTTTCGAGGGGATACTCTAACCCCAA
128 ATTATTTTCGAGGAGACACTCCAACCCCAA
* * * *
1817255 TTTTATTTCTAAAATATCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCT-GAGACG
1 TTTTATTTCTAAAATATCAATTTTTCACAATTGGGGATACTCCAACCCCATTATTTCTAGAAACG
* * * *
1817319 ATACTCAAACTCAGTTTTATTTCCAAAACATCGATTTTCCATTATCGGGGATACTCTAACCCCAT
66 ATACTCAAACTCGGTTTTATTTCCAAAACATCAATTTTCCA-TATCAGGGATACTCCAACCCCAT
* ***
1817384 TATTTTTGAGGAGACACTCCAACCTTGA
130 TATTTTCGAGGAGACACTCCAACCCCAA
* * *
1817412 TTTTATTTCTAAAATATCAATTTTTCACAATTGGGGATACGCCAACCCTATTATTT-TAGAAATG
1 TTTTATTTCTAAAATATCAATTTTTCACAATTGGGGATACTCCAACCCCATTATTTCTAGAAACG
* * ** * *
1817476 ATACTCTAATCCCGGTTTTATTTTTAGAACACCAATTTTCCACTATCAGGGATACTCCAACCC
66 ATACTC-AAACTCGGTTTTATTTCCAAAACATCAATTTTCCA-TATCAGGGATACTCCAACCC
1817539 TGGTTTTATT
Statistics
Matches: 237, Mismatches: 42, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
156 4 0.02
157 132 0.56
158 96 0.41
159 5 0.02
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.35
Consensus pattern (157 bp):
TTTTATTTCTAAAATATCAATTTTTCACAATTGGGGATACTCCAACCCCATTATTTCTAGAAACG
ATACTCAAACTCGGTTTTATTTCCAAAACATCAATTTTCCATATCAGGGATACTCCAACCCCATT
ATTTTCGAGGAGACACTCCAACCCCAA
Found at i:1817530 original size:236 final size:236
Alignment explanation
Indices: 1817097--1817538 Score: 510
Period size: 236 Copynumber: 1.9 Consensus size: 236
1817087 TCATTCATGT
* * * *
1817097 TTTTATTTCTAAAACACCTATTTTCGACCATTGGGGATACTCCAACCCCATTATTTCCAAAGGGA
1 TTTTATTTCCAAAACACCGATTTTCCACCATCGGGGATACTCCAACCCCATTATTTCCAAAGGGA
* * * * * *
1817162 TACTTCAACCTCGGTTTTATTTCCAAAACATTAATTTTCCCAAATCAGGGATACTCCAACCCCAT
66 CACTCCAACCTCGATTTTATTTCCAAAACATCAATTTTCACAAATCAGGGATACGCCAACCCCAT
* ** * * * * *
1817227 TATTTTCGAGGGGATACTCTAACCCCAATTTTATTTCTAAAATATCGATTTTTCACAATCGGGGA
131 TATTTTAGAAAGGATACTCTAACCCCAATTTTATTTCTAAAACACCAATTTTCCACAATCAGGGA
1817292 TACTCCAACCCCGTTATTTCTGAGACGATACTCAAACTCAG
196 TACTCCAACCCCGTTATTTCTGAGACGATACTCAAACTCAG
* ** * ***
1817333 TTTTATTTCCAAAACATCGATTTTCCATTATCGGGGATACTCTAACCCCATTATTT-TTGAGGAG
1 TTTTATTTCCAAAACACCGATTTTCCACCATCGGGGATACTCCAACCCCATTATTTCCAAAGG-G
* * * ** *
1817397 ACACTCCAACCTTGATTTTATTTCTAAAATATCAATTTTTCAC-AATTGGGGATACGCCAACCCT
65 ACACTCCAACCTCGATTTTATTTCCAAAACATCAA-TTTTCACAAATCAGGGATACGCCAACCCC
* * ** * * *
1817461 ATTATTTTAGAAATGATACTCTAATCCCGGTTTTATTTTTAGAACACCAATTTTCCACTATCAGG
129 ATTATTTTAGAAAGGATACTCTAACCCCAATTTTATTTCTAAAACACCAATTTTCCACAATCAGG
1817526 GATACTCCAACCC
194 GATACTCCAACCC
1817539 TGGTTTTATT
Statistics
Matches: 166, Mismatches: 38, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
235 3 0.02
236 157 0.95
237 6 0.04
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.35
Consensus pattern (236 bp):
TTTTATTTCCAAAACACCGATTTTCCACCATCGGGGATACTCCAACCCCATTATTTCCAAAGGGA
CACTCCAACCTCGATTTTATTTCCAAAACATCAATTTTCACAAATCAGGGATACGCCAACCCCAT
TATTTTAGAAAGGATACTCTAACCCCAATTTTATTTCTAAAACACCAATTTTCCACAATCAGGGA
TACTCCAACCCCGTTATTTCTGAGACGATACTCAAACTCAG
Found at i:1817544 original size:51 final size:50
Alignment explanation
Indices: 1817475--1817589 Score: 149
Period size: 51 Copynumber: 2.3 Consensus size: 50
1817465 TTTTAGAAAT
* *
1817475 GATACTCTAATCCCGGTTTTATTTTTAGAACACCAATTTTCCACTATCAGG
1 GATACTCTAA-CCCGGTTTTATTTCTAGAACACCAATTTTCCACAATCAGG
* *** *
1817526 GATACTCCAACCCTGGTTTTATTTCTAGAACATTGATTTTTCACAATCAGG
1 GATACTCTAACCC-GGTTTTATTTCTAGAACACCAATTTTCCACAATCAGG
1817577 GATACTCTAACCC
1 GATACTCTAACCC
1817590 CGTTATTTCC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 3 0.05
51 52 0.95
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (50 bp):
GATACTCTAACCCGGTTTTATTTCTAGAACACCAATTTTCCACAATCAGG
Found at i:1817606 original size:79 final size:79
Alignment explanation
Indices: 1817523--1817676 Score: 213
Period size: 79 Copynumber: 1.9 Consensus size: 79
1817513 TTCCACTATC
* * * *
1817523 AGGGATACTCCAACC-CTGGTTTTATTTCTAGAACATTGATTTTTCACAATC-AGGGATACTCTA
1 AGGGATACTCCAACCTC-AGTTTTATTTCCAAAACATCGATTTTTCACAATCGA-GGATACTCTA
1817586 ACCCCGTTATTTCCAA
64 ACCCCGTTATTTCCAA
* * *
1817602 AGGGATATTGCAACCTCAGTTTTATTTCCAAAACATCGATTTTTCACAATCGAGGATACTCTAGC
1 AGGGATACTCCAACCTCAGTTTTATTTCCAAAACATCGATTTTTCACAATCGAGGATACTCTAAC
1817667 CCCGTTATTT
66 CCCGTTATTT
1817677 TTGATGGGAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
79 64 0.97
80 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (79 bp):
AGGGATACTCCAACCTCAGTTTTATTTCCAAAACATCGATTTTTCACAATCGAGGATACTCTAAC
CCCGTTATTTCCAA
Found at i:1817713 original size:79 final size:76
Alignment explanation
Indices: 1817523--1817713 Score: 195
Period size: 79 Copynumber: 2.4 Consensus size: 76
1817513 TTCCACTATC
* * *
1817523 AGGGATACTCCAACCCTGGTTTTATTTCTAGAACATTGATTTTTCACAATCAGGGATACTCTAAC
1 AGGGATACT-CAACCC-AGTTTTATTTC-AAAACATCGATTTTTCACAATCAGGGATACTCTAAC
1817588 CCCGTTATTTCCAA
63 CCCGTTATTTCCAA
* *
1817602 AGGGATATTGCAACCTCAGTTTTATTTCCAAAACATCGATTTTTCACAATC-GAGGATACTCTAG
1 AGGGATACT-CAACC-CAGTTTTATTT-CAAAACATCGATTTTTCACAATCAG-GGATACTCTAA
***
1817666 CCCCGTTATTTTTGA
62 CCCCGTTATTTCCAA
* *
1817681 TGGGATACTCTAACCCCGTATTTATCTTCAAAA
1 AGGGATACTC-AACCCAGT-TTTAT-TTCAAAA
1817714 TATTAAATTT
Statistics
Matches: 94, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
78 5 0.05
79 85 0.90
80 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (76 bp):
AGGGATACTCAACCCAGTTTTATTTCAAAACATCGATTTTTCACAATCAGGGATACTCTAACCCC
GTTATTTCCAA
Found at i:1819376 original size:20 final size:20
Alignment explanation
Indices: 1819351--1819501 Score: 115
Period size: 20 Copynumber: 7.0 Consensus size: 20
1819341 CAGATGTAGG
* * *
1819351 GATACATTTTTCAATATATA
1 GATACATTCTTCAATGTATC
1819371 GATACATTCTTCAATGTATC
1 GATACATTCTTCAATGTATC
1819391 GATACATTCTTCAATGTATC
1 GATACATTCTTCAATGTATC
*
1819411 GATACATTTTGTCTTTTCACCCCGATGTATT
1 GATACA---T-TC--TTCA-----ATGTATC
*
1819442 GATACATTTTTCAATGTATC
1 GATACATTCTTCAATGTATC
* *
1819462 GATACA-TCTATGAATGCATC
1 GATACATTCT-TCAATGTATC
*
1819482 GATACATTCTTAAATGTATC
1 GATACATTCTTCAATGTATC
1819502 AATATATTCC
Statistics
Matches: 107, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
19 2 0.02
20 77 0.72
21 3 0.03
23 1 0.01
24 2 0.02
25 4 0.04
26 4 0.04
27 1 0.01
28 1 0.01
31 12 0.11
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (20 bp):
GATACATTCTTCAATGTATC
Found at i:1819498 original size:91 final size:90
Alignment explanation
Indices: 1819333--1819562 Score: 300
Period size: 91 Copynumber: 2.5 Consensus size: 90
1819323 AAAAATCACA
** * * *
1819333 CTTTTACCCAGATGTAGGGATACATTTTTCAATATATAGATACATTCT-TCAATGTATCGATACA
1 CTTTTACCCAGATGTATTGATACATTTTTCAATGTATCGATACA-TCTATCAATGCATCGATACA
* * **
1819397 TTCTTCAATGTATCGATACATTTTGT
65 TTCTTAAATGTATCAATACATTCCGT
* *
1819423 CTTTTCACCCCGATGTATTGATACATTTTTCAATGTATCGATACATCTATGAATGCATCGATACA
1 CTTTT-ACCCAGATGTATTGATACATTTTTCAATGTATCGATACATCTATCAATGCATCGATACA
*
1819488 TTCTTAAATGTATCAATATATTCCGT
65 TTCTTAAATGTATCAATACATTCCGT
* *
1819514 CTTTTTACCAAGATGTATTGATACATTATTCAATGTATCGATACATCTA
1 C-TTTTACCCAGATGTATTGATACATTTTTCAATGTATCGATACATCTA
1819563 GTTAAAATTA
Statistics
Matches: 122, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
90 8 0.07
91 110 0.90
92 4 0.03
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.40
Consensus pattern (90 bp):
CTTTTACCCAGATGTATTGATACATTTTTCAATGTATCGATACATCTATCAATGCATCGATACAT
TCTTAAATGTATCAATACATTCCGT
Found at i:1822319 original size:9 final size:9
Alignment explanation
Indices: 1822305--1822332 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
1822295 ATATCGAGTC
1822305 GAAACCAAT
1 GAAACCAAT
1822314 GAAACCAAT
1 GAAACCAAT
1822323 GAAACCAAT
1 GAAACCAAT
1822332 G
1 G
1822333 TCAAGTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.21, G:0.14, T:0.11
Consensus pattern (9 bp):
GAAACCAAT
Found at i:1828006 original size:27 final size:27
Alignment explanation
Indices: 1827966--1835278 Score: 5442
Period size: 27 Copynumber: 268.3 Consensus size: 27
1827956 CAACCTTTTT
*
1827966 CTTTTAAGTCCACAACTCTGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1827993 CTTTTAAGTTCACAACACCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828020 CTTTTAAAGTCCATAACTACGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * *
1828047 TCTTTTAAGTCCATAACTCCTTGACACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828075 CTTTTAAGTCCACAACTCCGTGGAACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828102 CTTTCAAAGTCCACAACTCC---ACACA
1 CTTT-TAAGTCCACAACTCCGTGGCACA
*
1828127 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
1828154 CTTTTAAAGTCCACAACTCCGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
*
1828181 CCTTTTAAGTCCACAACTCCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1828209 CATTTAAGTCCACAACTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828235 CCTTTTTAAGTCCACAACTCCCTGGCACC
1 -C-TTTTAAGTCCACAACTCCGTGGCACA
* *
1828264 CTTTCAAAGTTCACAACTCCGTGGCA-A
1 CTTT-TAAGTCCACAACTCCGTGGCACA
* **
1828291 CCTTTTAAGTCCATAACTCTTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1828319 CTTTTAAGTCCACAACACCATGGTACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
**
1828346 CTTTTAAAGTCCACAACTCCGCAGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * **
1828373 CCTTTTAAGTCCACAACTCTGAGATA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1828400 CCATTTAAGTCCACAACTCCATGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828428 CGTTTAAGTCTACAACTCCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1828455 TTTTTAAGTCCACAACTCTGTGGTACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1828482 TTTTTAAGTCCACAGCTACGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1828509 TTTTTAAGTCCACAACTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1828535 CCTTTTAAGTCCGCATCTCTGTGGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1828562 CTTTTTGAAGTCCACAACTCCGTGGCACC
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* *
1828591 CTTTTTAAGTCCACAACTCCATGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* *
1828619 CTTTTAAAGTTCACAACTCCTTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1828646 CCTTTTAAGTCCACAACTCCTTGGCAAA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828674 CTTTTAAGTCCACAACACCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1828701 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1828729 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1828756 CTTTTAAGTCCACAACTCCGTAGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1828783 -TTTTAAGTCCACAACTTCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* **
1828808 CCTTTAAAGTCCACAACTTTGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828835 CCTTTTAAGTCCACAACCCCATGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1828863 CTATTAAGTCCACAGCTCTGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1828889 CCTTTTATGTCCACAGCTTCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828916 CCTTTTAAGTCCACAACCCCATGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1828944 CTATTAAGTCCACAACGCCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1828971 -TATTTACGGCCACAGCTCCGTGGCA-A
1 CT-TTTAAGTCCACAACTCCGTGGCACA
* * *
1828997 CCTTTTTAGTCCAGAACTCTGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * * ***
1829024 CCTTTTAAGTCAATAGCTTCACAGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * **
1829051 CCTTTTAAGTTCATAGCTTTGTGGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1829078 CTTTTTAAAGTCCACAACTCCTTGGCACA
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* * *
1829107 CTTTTAAGTCCATAACTCCATGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* **
1829134 CTTTTTAAGTTCACAACTCTATGGCA-A
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * ** *
1829161 CCTTCTAAGTCCATAACTCTTTGGCATA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1829189 GTTTTAAGTCCACAACACCGTGGCAC-
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1829215 CTTTTTAAAGTCCACAACTCCGTGACA-A
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* * *
1829243 CCTTTTAAGTCCACAACGCTGAGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * * *
1829270 CCATTTATGTCCATAACTCCATGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1829298 CTTTTAAGTCCACAACTCTGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1829325 TTTTTAAGTTCACAGCTCCATGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1829351 CCTTTTAAGTCCACAACTCCATGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1829378 CCTTTTATGTCCACATCTCTGTGGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1829405 CTTTTAAAGTCCACAACTCCGTGGTAGC-
1 CTTTT-AAGTCCACAACTCCGTGGCA-CA
** *
1829433 CTTTTTAAGTCCACAACTCCGTGGTGCC
1 C-TTTTAAGTCCACAACTCCGTGGCACA
*
1829461 CTTTTAAAGTCCACAACTCCGCGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * *
1829488 CCTTTTAAGTCCATAACGCCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1829516 CTTTTAAGTCCACAACACCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1829543 CTTTTAAAGTCCATAACTCCGTGGCAC-
1 CTTTT-AAGTCCACAACTCCGTGGCACA
**
1829570 CTTTTTAAGTCCACAACTCTATGGCACA
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * *
1829598 TTTTTAAGTCCACAGCTTCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1829624 CCTTTTAAGTCCACAACTCCATGGGA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1829651 CATTTCAAGTCCACAACTCCGAGGCA-A
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * *
1829678 CCATTTAAGTCCACAACTCTGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
1829706 CTTTTAAGTCCACAACTCCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * **
1829733 TTTTTAAGTGCACACCTCTATGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1829759 CCTTTTAAGTCCACCACTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1829786 CCTTTTAAGTCCACATCT-CATGGCGCC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1829813 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * *
1829841 CTTTTTAAGTCCAAAACTCTGTGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACA
**
1829869 CTTTTAAAGTCCACAACTCTACG-GTAAC-
1 CTTTT-AAGTCCACAACTC--CGTGGCACA
* * *
1829897 CCTTTAAGTCCATAACTCCTTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1829924 TTTTTAAGTCCACAACTCTGTGGCGCC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1829951 CTTTCAAAGTCCACAACTCCGTGCCA-A
1 CTTT-TAAGTCCACAACTCCGTGGCACA
* *
1829978 CCTTTTAAGTCCACAACTCTGTGACA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* **
1830005 CCTTTTAAGTCCACAACTCTGCAGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1830032 CATTTTAAGTCCATAACTCCGTGGCATA
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * **
1830060 TTTTTAAGTCCACAGTCCATAACTCTGTGATAC-
1 CTTTTAAGT-C-CA---C--AACTCCGTGGCACA
*
1830093 CATTTTAAGTCCACAACTCTGTGGCACA
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * *
1830121 TTTTTACGTCCACAGCTCCGTGGCATC-
1 CTTTTAAGTCCACAACTCCGTGGCA-CA
* * *
1830148 CTTTCAAGTCCACAGCTCCATGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * **
1830174 CCTTTTAAGTCGATAACTCAATGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* ** *
1830201 CCTTTTAAGTCCACAGCTCAATGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1830229 CTTTTAAAGTCTACAACTCCGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1830256 CCTTTTAAGTCCATAACTCCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1830284 CTTTTAAGTCCACAACTCCGTAGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
1830311 CTTTTAAAGTCCACAACTCCGTGGCAC-
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1830338 CTTTTTGAGTCCACAACTCCGTGGAACA
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * *
1830366 TTTTTAAGTCCATAGCTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1830392 CCTTTTAAGTCCACAACTTCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1830419 CCTTTTAAGTCCACAACTCCGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1830447 CTTTTAAGTCCACAACTCCGCGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1830474 TTTTTAAGTCCACAGCTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1830500 CCTTTTAAGTACACAGCTTCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1830527 CCTTTTAAGTCCATAACCCCGTGGCGCC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1830555 CTTTTAAGTCCACAACACCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1830582 TTTTTAAGTCCACAGCTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1830608 CCTTTTAAGTCCACAACTCCGTCGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * * * *
1830635 GCTTTTTACTCGATAGCTCCGTAGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1830662 CCTTTTAAGTCCA-AAGCTTCGTGGCAC-
1 -CTTTTAAGTCCACAA-CTCCGTGGCACA
* * *
1830689 CTTTTTAAACTCCATAACTCCTTGGCACA
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* *
1830718 CTTTTAAGTCCACAACTCTGTGGCACCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CA
* *
1830746 CTTTTAAGTCCACAACTCAGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1830773 CTTTCAAAGTTCACAACTTCGTGGCA-A
1 CTTT-TAAGTCCACAACTCCGTGGCACA
* * ** *
1830800 CCTTTTAAGCCCATAACTCTTTGGGACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1830828 CTTTTAAGTCCATAACACCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1830855 CTTTTAAAGTCCACAACTCCGTGGCAGA
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1830883 CTTTTAAAGTCCACAACTCCATGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * * *
1830911 CTTTTAAAGCCCATAACTCCGTAG-AAA
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * * *
1830938 CCTTTTAAGCCCATAACTTCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1830966 CTTTGAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
1830993 CTTTTAAAGTCCACAACT-CGCTGGCA-A
1 CTTTT-AAGTCCACAACTCCG-TGGCACA
* *
1831020 CCTTTTAAGCCCGCAACTCCGTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1831048 TTTTTAAGTCCACAGCTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1831074 CCTTTTAAGTCCACAGCTTCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1831101 CCTTCTAAGTCCACAACTCCGTGGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
1831128 CTTTTTAAGTCCACAACTCCGTGGCACA
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * **
1831156 TTTTTAAGTCCATAGGTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1831182 CCTTTTAAGTCAACAACTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * * *
1831209 CCTTTTTAGTCAATAGCTCCGTAGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
**
1831236 CCTTTTAAGTCCTTAACTCCGTGGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
1831263 CTTTTTAAAGTCCACAACTCCGTGGCA-A
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* *
1831291 CCTTTTAAGTCAACAACTCCGAGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1831318 CCATTTAAGTCCACAACTCCGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
1831346 CTTTTAAGTCCACAACTCCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1831373 TTTTTAAGTGCACACCTCCATGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1831399 CCTTTTAAGTCCACAACTCTGCGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1831426 CCTTTTAAGTCCACATCT-CGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1831453 CTTTTAAAGTCCACAATTCTGTGGCACCA
1 CTTTT-AAGTCCACAACTCCGTGGCA-CA
* * * * *
1831482 TTTTTAAGGCCAAAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* ***
1831509 CTTTTAAAGTCCATAACTCTACGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * *
1831536 CCCTTTAAGTCCATAACTCCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1831564 TTTTTAAGTCCACAACTCTGTGGCGCC
1 CTTTTAAGTCCACAACTCCGTGGCACA
1831591 CTTTTAAAGTCCACAACTCCGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1831618 CCTTTTAAGTCCATAACTCCGTGACA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1831645 CCTTTTAAGTCCACAACTCTGCGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1831673 CTTTTAAGTCCATAACTCCGTGGCATA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * * *
1831700 TTTTTAAGTCCATAGCTCCATGG-AAA
1 CTTTTAAGTCCACAACTCCGTGGCACA
*** *
1831726 CCTTTTAAGTCGTTAACTCCATGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1831753 CCTTCTAAGTCTACAGCTCCGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1831781 CTTTTAAAGTCTACAACTCCGTGGCAGC-
1 CTTTT-AAGTCCACAACTCCGTGGCA-CA
* * *
1831809 CTTTTAAGTCCATAACTCCTTAGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1831836 CTTTTAAGTCTACAACTACGTAGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1831863 CTTTTAAAGTCTACAACTCCGTGGCAC-
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1831890 CTTTTTGAGTCCACAACTCCGTGGAACA
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * ** *
1831918 TTTTTAAGTCCATAGTTCTGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
** *
1831944 CCTTTTAAGTCCACAACTTGGTGACA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1831971 CCTTTTAAGTCCATAACTCCGTGGCCCC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *** *
1831999 CTTTTAAGTCCACAACTTCACAGCAAA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1832026 TTTTTAAGTCTACAGCTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1832052 CTTTTTAAATACACAGCTTCGTGGCA-A
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* ** *
1832079 CCTTTTAAGTCCATAA-TCCCGTGGTGCC
1 -CTTTTAAGTCCACAACT-CCGTGGCACA
* * *
1832107 CTTTTAAGTCCACAACACCATGGCACT
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1832134 TTTTTAAGTCCACAGCTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
1832160 CCTTTTAAGTCCACAACTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1832187 CCTCTTT-ACTCGACATCTCCGTAGCA-A
1 -CT-TTTAAGTCCACAACTCCGTGGCACA
1832214 CCTTTTAAGTCCA-AAGCTCCGTGGCAC-
1 -CTTTTAAGTCCACAA-CTCCGTGGCACA
* * *
1832241 CGTTTTAAACTCCATAACTCCTTGGCACA
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* *
1832270 CTTTTATGTCCACAACTCCGTGGCACCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CA
*
1832298 CTTTTAAGTCCACAACTCAGTGGCAC-
1 CTTTTAAGTCCACAACTCCGTGGCACA
** *
1832324 CTTTTCAAAGTTTACAAATCCGTGGCA-A
1 CTTTT--AAGTCCACAACTCCGTGGCACA
* * ** *
1832352 CCTTTTAAGCCCATAACTCTTTGGGACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1832380 CTTTTAAGTCGATAACACCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1832407 CTTTTAAAGTCCAGAACTTCGTGGCAGA
1 CTTTT-AAGTCCACAACTCCGTGGCACA
*
1832435 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACA
** * *
1832463 CTTTTAAAACCCACATCTCCGTAGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * *
1832490 CCTTTTAAGCCCATAACTCCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1832518 CTTTGAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1832545 CTTTTAAAGTCCACAACTCCCTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1832572 CCTTTTAAGCCCGCAACTCCGTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1832600 TTTTTAAGTCCACAGCTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1832626 CCTTTGAACTCCACAGCTTCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1832653 CCTTTTAAGTCCACGATTCCGTGGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1832680 CATTTTAAGTCCATAACTCTGTGGCACA
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* * **
1832708 TTTTTAAGTCCATAGGTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1832734 CCTTTTAAGTCAACAACTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1832761 CCTTTTTAGTCAACAGCTCCGTAGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
** *
1832788 CCTTTTAAGTCCTTAGCTCCGTGGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1832815 CTTTTTAAAGTCCACAACTTCGTGGCA-A
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* *
1832843 CCTTTTAAGTCAACAACTCCGTAGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1832870 CCTTTTAAGTCCATAACTCCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1832898 CTTTTAAGTCCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1832925 CTTTTTTAAGTCCACAACTCTGGGGCA-A
1 C--TTTTAAGTCCACAACTCCGTGGCACA
*
1832953 CCTTTTAAGTCCACAACTCCGTGGTACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
1832981 CTTTTAAGTCCACAACTCCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1833008 TTTTTAAGTCCACAATTCTGTGGCATC-
1 CTTTTAAGTCCACAACTCCGTGGCA-CA
* * **
1833035 CTTTCAAGTCCACAGCTCCAAGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* **
1833061 CCTTTTAAGTCCACAGCTCTATGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1833089 CTTTTAAGTCCAAAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1833116 CTTTTTTAAGTCCACAACTCTGTGGAACC
1 C--TTTTAAGTCCACAACTCCGTGGCACA
*
1833145 CTTTTAAGTCCACAACCCCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1833172 TTTTTAAGTCCACAGCTCCGTGGCATC-
1 CTTTTAAGTCCACAACTCCGTGGCA-CA
* * *
1833199 CTTTCAAGTCCACAGCTCCATGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* ** *
1833225 CCTTTTAAGTCCACAGCTCTATGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1833253 CTTTTAAAGTCCACAACTCCGCGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* ** *
1833280 CCTTTTAAGCCCGTAACTCCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1833308 GTTTTAAGTCCATAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
1833335 CTTTTAAAGTCCACAACTCCGTGGCGACA
1 CTTTT-AAGTCCACAACTCCGTGGC-ACA
**
1833364 -TTTTAAGTCCGTAACTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1833389 CCTTTTAAGTCCTCAACTCCGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1833417 CTTTTAAGTCCACAACTCCATGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * **
1833444 TTTTTAAGTCCACAGCTCTTTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1833470 CCATTTAAGTCCACCACTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1833497 CCTTGTAAGTCAACAGCTCCGTCGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1833524 CCTTTTAGGTCCACAACTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1833551 CCTTCTAAGTCCATAACTCCTTGGCATA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1833579 CTTTTAAGTCCACAACT-CGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1833605 CTTCTTAAGTCCACAACTCCATGGCAC-
1 CTT-TTAAGTCCACAACTCCGTGGCACA
*
1833632 CATTTTAAAGTCCACAACTCCGTAGCA-A
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
*
1833660 CCTTTTAAGTCCACAATTCCGTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1833688 TTTTTACGTCCACAGCTGCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1833714 CCTTTTAAGTCCAC-AGTTCTTCAGCATC-
1 -CTTTTAAGTCCACAACTCCGT-GGCA-CA
* *
1833742 CTTTTAAAGTTTAAGTCCACAACTCCTTGGTA-A
1 C---T----TTTAAGTCCACAACTCCGTGGCACA
* * * *
1833775 CCATCTAAGTCCACAACTTCGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1833803 CTCTAAAGTCCATAACTCCATGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1833830 TTTTTATGTCCATAGCTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1833856 CCTTTTAAGTCCACAACCCCATGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1833883 CCTTTTATGTCCACAGCTCTGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1833911 CTTTTAAATTCCACAATTCCGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * *
1833938 CCTTTTAAGTCCACAGCTCCGTAGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1833966 CTTTTAAAGTCCATAGCCCCGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * *
1833993 CCATTTAAGTCCATAACTCCTTGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1834021 CTTTTAAGTGCACAACTCCGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1834047 CCTTTAAAGTCTACAACTCTGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1834074 CCTTTTAAGTCTACAACTTCATGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* ** *
1834102 CTTTTAAGTCCATAACTCCACGGAACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1834129 -TTTTCAAGTCCATAGCTCCGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
1834155 CCTTTTAAGTCCACAACTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1834182 CCTTTTAAGTCCACAACTCCGCGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1834210 TTTTTAAGTCCACAGCTCCGTTGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * * *
1834236 CCATTTAAGTCCACAGCTTCATGG-AAA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1834263 CCTTTTAAGTCTACAGCTCCGTGG-AAA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1834290 CCTTTTAAGGCCACAACTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
** ** *
1834317 CCTTTTAAGTCCACAGTTCTATGGCACT
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1834345 CTTTTAAAGTCCATAACCCCGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
*
1834372 CCTTTTAAGTCCACAACCCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1834399 CCTTTTTAGTCAACAGCTCCGTAGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1834426 CCTTTTAAGTCCATAGCTCCGTGGTAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1834453 CTTTTTAAAGT-CACCAACTCCATGGCA-A
1 C-TTTT-AAGTCCA-CAACTCCGTGGCACA
* * * *
1834481 CCTTTTAAGTCAACAGCTCCATAGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1834508 CCTTTTAAGTCCATAGCTCCGTGGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1834535 CTTTTAAATTCCACAACTCCGTGGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* * *
1834562 CCTTTTATGTCCATAACTCCGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
1834590 CTTTTAAGTCCACAACTCCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1834617 TTTTTAAGTCCACAGCTCCATGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1834643 CCTTTTAAGTTCAGAACTCTGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1834670 CCTTTGAAGTCCACATCTCCATGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1834698 CTTTTAAAGTCTACAACTCCGTAGCA-A
1 CTTTT-AAGTCCACAACTCCGTGGCACA
* *
1834725 CGTTTT-AGTCCATAACTCCTTGGCACA
1 C-TTTTAAGTCCACAACTCCGTGGCACA
* *
1834752 CTTTTAAGTCCACAACTCCGTAGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1834779 CTTTTAAAGTCCATAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACA
*
1834807 CTTTTAAGTCCACAACTCCGTGGGACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * *
1834834 -TTATTAAGTTCACAGCTACGTGGCA-A
1 CTT-TTAAGTCCACAACTCCGTGGCACA
* * * **
1834860 CCATCTAAGTCCATAACTCTATGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1834887 CCTTTTAAGTCTACAACTCCGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* *
1834915 CTTTTAAGTCCCCAACTCTGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1834942 TTTTTAAGTCCATAACTCCATGCCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * * *
1834968 CCATTTAAGTCCACAGCTTCATTGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*** * *
1834995 CCTTTTAAGTTTGCAACCCCATGGCACA
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * * *
1835023 ATTTCAGGTCCAAAACTCTGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1835050 TTTTTAAGTCTACAGCTCTGTGGCA-A
1 CTTTTAAGTCCACAACTCCGTGGCACA
* *
1835076 CCTTTTCAGTCCACAGCTCCGTGGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1835103 CCTTTTAACTCAACAGCTCCGTAGCA-A
1 -CTTTTAAGTCCACAACTCCGTGGCACA
* * * *
1835130 CCTTTTAAGTCCATAGCTCCATTGCAC-
1 -CTTTTAAGTCCACAACTCCGTGGCACA
*
1835157 CTTTTTAAAGTCCACAACTCCTTGGCACA
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* * *
1835186 CTTTTAAATCTACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACA
*
1835213 CTTTTTAAAGTCCACAACTCCGTGGTACA
1 C-TTTT-AAGTCCACAACTCCGTGGCACA
* * *
1835242 CTTTCAAAGTTCACAACTTCGTGGCA-A
1 CTTT-TAAGTCCACAACTCCGTGGCACA
1835269 CCTTTTAAGT
1 -CTTTTAAGT
1835279 TCCATAAACT
Statistics
Matches: 5853, Mismatches: 1142, Indels: 582
0.77 0.15 0.08
Matches are distributed among these distances:
24 14 0.00
25 9 0.00
26 148 0.03
27 4322 0.74
28 1208 0.21
29 111 0.02
30 2 0.00
32 2 0.00
33 1 0.00
34 31 0.01
35 5 0.00
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.29
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACA
Found at i:1830099 original size:88 final size:88
Alignment explanation
Indices: 1829985--1830168 Score: 237
Period size: 88 Copynumber: 2.1 Consensus size: 88
1829975 CAACCTTTTA
* *
1829985 AGTCCACAACTCTGTGACAACCTTTTAAGTCCACAACTCTGCAGCACCA-TTTTAAGTCCATAAC
1 AGTCCATAACTCTGTGACAACCTTTTAAGTCCACAACTCTGCAGCA-CATTTTTAAGTCCACAAC
* *
1830049 TCCGTGGCATATTTTTAAGTCCAC
65 TCCGTGGCATACTTTCAAGTCCAC
* ** * *
1830073 AGTCCATAACTCTGTGA-TACCATTTTAAGTCCACAACTCTGTGGCACATTTTTACGTCCACAGC
1 AGTCCATAACTCTGTGACAACC-TTTTAAGTCCACAACTCTGCAGCACATTTTTAAGTCCACAAC
*
1830137 TCCGTGGCATCCTTTCAAGTCCAC
65 TCCGTGGCATACTTTCAAGTCCAC
1830161 AGCTCCAT
1 AG-TCCAT
1830169 GGCAACCTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
87 5 0.06
88 73 0.88
89 5 0.06
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (88 bp):
AGTCCATAACTCTGTGACAACCTTTTAAGTCCACAACTCTGCAGCACATTTTTAAGTCCACAACT
CCGTGGCATACTTTCAAGTCCAC
Found at i:1835177 original size:28 final size:27
Alignment explanation
Indices: 1835132--1835233 Score: 102
Period size: 28 Copynumber: 3.7 Consensus size: 27
1835122 CGTAGCAACC
* *
1835132 TTTT-AAGTCCATAGCTCCATTGCACCT
1 TTTTAAAGTCCACAACTCC-TTGCACCT
1835159 TTTTAAAGTCCACAACTCCTTGGCACAC-
1 TTTTAAAGTCCACAACTCCTT-GCAC-CT
* *
1835187 TTTTAAA-TCTACAACTCCGTGGCACCCT
1 TTTTAAAGTCCACAACTCC-TTGCA-CCT
1835215 TTTTAAAGTCCACAACTCC
1 TTTTAAAGTCCACAACTCC
1835234 GTGGTACACT
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
27 20 0.32
28 32 0.51
29 11 0.17
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.32
Consensus pattern (27 bp):
TTTTAAAGTCCACAACTCCTTGCACCT
Found at i:1835335 original size:27 final size:27
Alignment explanation
Indices: 1835303--1835441 Score: 145
Period size: 27 Copynumber: 5.0 Consensus size: 27
1835293 TAGCTTGGTG
*
1835303 GGACTTAAAAGGTTGCCATAGAGTTGT
1 GGACTTAAAAGGTTGCCACAGAGTTGT
* *
1835330 AGACTTAAAAGGTTTGCCTAC-GAAGGTGT
1 GGACTTAAAAGG-TTGCC-ACAG-AGTTGT
* ** *
1835359 GCACTTAAAAAATGTGCCACGGAGTTGT
1 GGACTTAAAAGGT-TGCCACAGAGTTGT
* *
1835387 GGGCTTAAATGGTTGCCACAGAGTTGT
1 GGACTTAAAAGGTTGCCACAGAGTTGT
*
1835414 GGACTTAAAAGGTTGCCACGGAGTTGT
1 GGACTTAAAAGGTTGCCACAGAGTTGT
1835441 G
1 G
1835442 TGCTTTCAAA
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
27 49 0.54
28 22 0.24
29 19 0.21
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.27
Consensus pattern (27 bp):
GGACTTAAAAGGTTGCCACAGAGTTGT
Found at i:1835467 original size:54 final size:53
Alignment explanation
Indices: 1835304--1835477 Score: 138
Period size: 55 Copynumber: 3.2 Consensus size: 53
1835294 AGCTTGGTGG
** * * * * *
1835304 GACTTAAAAGGTTGCCATAGAGTTGTAGACTTAAAAGGTTTGCCTAC-GAAGGTGT
1 GACTTAAAAGGTTGCCACGGAGTTGTGGGCTTAAATGG-GTGCC-ACAG-AGTTGT
** *
1835359 GCACTTAAAAAATGTGCCACGGAGTTGTGGGCTTAAATGGTTGCCACAGAGTTGT
1 G-ACTTAAAAGGT-TGCCACGGAGTTGTGGGCTTAAATGGGTGCCACAGAGTTGT
* * *
1835414 GGACTTAAAAGGTTGCCACGGAGTTGTGTGCTTTCAAA-GGGTGCC-CGGTGTTGT
1 -GACTTAAAAGGTTGCCACGGAGTTGTGGGC-TT-AAATGGGTGCCACAGAGTTGT
1835468 GACTTAAAAG
1 GACTTAAAAG
1835478 TGTGCAAAGA
Statistics
Matches: 99, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
53 10 0.10
54 24 0.24
55 25 0.25
56 19 0.19
57 21 0.21
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (53 bp):
GACTTAAAAGGTTGCCACGGAGTTGTGGGCTTAAATGGGTGCCACAGAGTTGT
Found at i:1835477 original size:25 final size:26
Alignment explanation
Indices: 1835304--1835482 Score: 117
Period size: 27 Copynumber: 6.6 Consensus size: 26
1835294 AGCTTGGTGG
* **
1835304 GACTTAAAAGGTTGCCATAGAGTTGT
1 GACTTAAAAGGGTGCCACGGAGTTGT
* * *
1835330 AGACTTAAAAGGTTTGCCTACGAAGGTGT
1 -GACTTAAAAGG-GTGCC-ACGGAGTTGT
**
1835359 GCACTTAAAAAATGTGCCACGGAGTTGT
1 G-ACTT-AAAAGGGTGCCACGGAGTTGT
* * * *
1835387 GGGCTTAAATGGTTGCCACAGAGTTGT
1 -GACTTAAAAGGGTGCCACGGAGTTGT
*
1835414 GGACTTAAAAGGTTGCCACGGAGTTGT
1 -GACTTAAAAGGGTGCCACGGAGTTGT
* * *
1835441 GTGCTTTCAAAGGGTGCC-CGGTGTTGT
1 G-AC-TTAAAAGGGTGCCACGGAGTTGT
*
1835468 GACTTAAAAGTGTGC
1 GACTTAAAAGGGTGC
1835483 AAAGAG
Statistics
Matches: 120, Mismatches: 25, Indels: 16
0.75 0.16 0.10
Matches are distributed among these distances:
25 10 0.08
26 2 0.02
27 61 0.51
28 28 0.23
29 15 0.12
30 4 0.03
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (26 bp):
GACTTAAAAGGGTGCCACGGAGTTGT
Done.