Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1283
Parameters: 2 7 7 80 10 50 1000
Length:  103400

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1334--1374
16
2.5
16
88
4
55
46
0
2
51
1.14
1931--1981
19
2.7
19
84
6
68
76
21
1
0
0.88
8731--8813
27
3.0
27
72
22
82
55
8
6
30
1.54
10513--10595
30
2.8
30
81
3
96
68
0
1
30
0.97
10949--11004
16
3.7
15
75
20
53
30
1
1
66
1.12
13324--13398
11
6.5
11
68
14
53
34
0
1
64
1.02
16735--16777
20
2.2
19
87
4
59
48
0
2
48
1.14
16747--16802
27
2.1
27
83
12
71
46
1
0
51
1.11
18714--18784
29
2.4
30
88
6
110
35
0
2
61
1.10
19134--19173
21
1.9
21
84
0
53
45
0
7
47
1.31
19522--19596
39
1.9
39
94
2
134
44
16
6
33
1.73
23609--23700
23
4.1
22
74
12
73
53
1
1
44
1.15
29107--29138
2
16.0
2
100
0
64
50
0
50
0
1.00
31282--31315
15
2.3
15
85
5
52
61
0
0
38
0.96
32698--32734
19
1.9
19
94
0
65
43
0
0
56
0.99
33223--33260
17
2.2
17
86
9
51
36
2
2
57
1.26
33501--33559
25
2.4
25
94
0
100
37
33
5
23
1.77
37351--37506
45
3.5
44
74
13
156
19
16
20
42
1.89
37336--37558
90
2.5
88
81
6
243
19
16
20
43
1.88
37341--37558
45
4.8
44
71
15
142
18
16
20
44
1.87
45263--45309
22
2.2
21
88
3
67
61
4
0
34
1.15
45258--45329
27
2.8
26
74
25
82
61
4
0
34
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45263--45319
21
2.6
22
88
2
80
63
3
0
33
1.12
45281--45325
21
2.1
21
87
0
63
66
2
0
31
1.04
45553--45661
50
2.3
46
82
7
130
53
0
0
46
1.00
45742--45831
40
2.3
39
81
7
101
50
2
0
47
1.13
46342--46460
24
4.7
24
69
18
64
59
0
0
39
1.03
46355--46435
19
4.4
20
77
18
79
64
0
1
34
1.02
46395--46467
8
8.9
8
73
19
53
56
0
0
43
0.99
46395--46496
33
3.1
32
80
14
109
53
0
0
46
1.00
46736--46791
6
8.7
6
81
14
58
50
0
0
50
1.00
46734--46806
34
2.2
33
82
9
85
52
0
1
46
1.09
46742--46814
12
5.6
13
73
11
60
54
0
1
43
1.08
46771--46874
52
2.0
52
83
9
131
52
2
5
38
1.40
46892--46923
16
2.0
16
93
0
55
37
15
18
28
1.92
46973--47033
20
2.9
19
75
17
59
55
0
3
40
1.16
48324--48426
35
3.0
34
78
4
107
57
0
0
40
1.12
49567--49605
20
1.9
21
89
5
62
56
0
0
43
0.99
49589--49631
16
2.7
16
82
7
52
65
0
0
34
0.93
50394--50516
65
1.9
64
87
11
180
34
11
1
52
1.47
50468--50511
18
2.4
18
81
11
54
43
2
0
54
1.12
50722--50765
22
2.0
23
86
4
63
61
6
0
31
1.22
51344--51382
20
2.0
20
89
0
60
35
2
12
48
1.55
51665--51704
2
20.0
2
100
0
80
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54090--54128
19
2.1
19
100
0
78
20
10
35
33
1.86
54827--54857
14
2.2
14
100
0
62
67
0
6
25
1.14
56304--56336
13
2.4
14
90
5
50
66
3
0
30
1.06
64301--64440
63
2.2
63
80
10
151
39
10
5
45
1.59
66469--66520
15
3.3
15
74
15
52
51
7
1
38
1.42
67027--67055
12
2.3
13
94
5
51
58
13
6
20
1.58
72925--72980
26
2.1
27
80
9
71
53
0
0
46
1.00
72934--72993
26
2.3
26
82
2
66
56
0
0
43
0.99
72955--72994
20
2.0
20
90
0
62
60
0
0
40
0.97
73956--74002
2
23.5
2
100
0
94
48
0
0
51
1.00
78196--78246
25
2.0
26
88
11
79
43
0
0
56
0.99
78272--78311
21
1.9
21
85
10
55
37
0
0
62
0.95
78987--79027
13
3.1
14
82
6
50
48
0
2
48
1.14
79204--79249
20
2.3
20
96
0
83
45
2
0
52
1.13
79517--79548
14
2.3
14
94
0
55
62
0
0
37
0.95
79791--79830
19
2.1
19
85
4
53
50
2
0
47
1.14
79763--79829
26
2.7
24
74
21
66
44
1
0
53
1.09
79770--79841
15
4.4
16
75
17
69
50
1
0
48
1.09
81804--81892
32
2.6
35
75
10
96
39
0
0
60
0.97
81811--81882
22
3.4
22
77
9
62
43
0
0
56
0.99
81823--81900
22
3.5
22
77
8
70
44
0
0
55
0.99
82832--82897
33
2.0
33
82
11
82
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82887--82927
19
2.2
19
90
0
64
53
2
2
41
1.27
82942--82983
22
1.9
22
90
9
68
59
2
0
38
1.10
85026--85076
22
2.4
21
81
15
61
64
0
0
35
0.94
85032--85082
28
1.9
26
84
11
68
62
0
0
37
0.95
85184--85219
2
19.0
2
88
11
58
50
0
0
50
1.00
85304--85350
23
2.0
24
84
12
62
44
0
0
55
0.99
85555--85623
17
4.3
17
70
18
51
43
0
0
56
0.99
85557--85613
20
2.8
21
76
5
55
47
0
0
52
1.00
96313--96369
18
3.2
19
83
9
68
52
1
5
40
1.34
96415--96450
14
2.7
13
87
8
54
36
13
2
47
1.58
99854--99884
12
2.7
12
95
5
55
32
0
0
67
0.91
100048--100096
19
2.4
21
80
10
57
42
0
0
57
0.99
100061--100111
22
2.4
22
83
9
70
37
0
0
62
0.95
101674--101723
25
2.0
25
88
4
73
54
0
0
46
1.00
101697--101743
16
3.0
16
78
12
53
51
0
0
48
1.00
102370--102417
25
1.9
25
100
0
96
60
8
0
31
1.26

Tables:   1

The End!