genome.fa.s1284.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1284
Parameters: 2 7 7 80 10 50 1000
Length:  78964

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13581--13629	17	2.8	18	87	6	82	24	34	14	26	1.94
13777--14326	62	8.8	62	86	5	646	25	26	18	29	1.98
13777--14326	125	4.4	125	85	3	700	25	26	18	29	1.98
13777--14326	187	2.9	185	87	2	764	25	26	18	29	1.98
15913--16023	42	2.6	41	83	7	134	39	18	24	18	1.92
16069--16251	62	3.1	60	79	9	205	29	19	26	24	1.98
16138--16278	55	2.6	55	84	3	178	24	20	28	26	1.99
16143--17527	155	8.7	154	79	8	1288	26	19	28	25	1.98
16605--16781	63	2.9	62	78	2	194	28	17	26	27	1.98
16729--16916	55	3.4	55	83	3	238	22	21	28	28	1.99
17230--17935	61	11.6	61	84	6	862	28	18	28	25	1.98
17242--17935	123	5.7	123	85	7	880	27	18	27	25	1.98
24096--24312	79	2.7	79	80	5	215	34	12	23	28	1.92
24254--24363	51	2.2	51	89	0	166	32	9	25	32	1.87
24457--24624	76	2.2	75	88	1	237	30	15	28	25	1.96
28148--28222	20	3.8	19	80	7	87	29	14	13	42	1.84
30523--30846	76	4.2	76	86	2	452	26	26	15	31	1.95
30523--30846	155	2.1	151	87	4	454	26	26	15	31	1.95
30803--30862	28	2.1	28	93	0	102	21	23	23	31	1.98
30727--30958	104	2.2	104	83	6	272	25	26	15	31	1.96
30803--30874	28	2.6	28	88	0	90	22	27	22	27	1.99
33199--33336	52	2.7	51	82	6	165	31	15	13	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38147--38375	98	2.4	97	81	3	282	27	21	12	39	1.89
42415--42781	143	2.6	138	83	7	470	44	8	11	35	1.72
43318--43342	13	1.9	13	100	0	50	32	16	16	36	1.90
43330--43381	20	2.6	20	81	0	68	42	13	13	30	1.83
43433--43457	13	1.9	13	100	0	50	32	16	16	36	1.90
43413--43480	33	2.1	33	88	2	102	35	17	14	32	1.91
46875--47058	85	2.2	85	86	0	251	46	14	21	17	1.83
46921--47056	42	3.2	42	71	10	132	47	14	22	15	1.81
46903--47027	42	3.0	42	72	10	128	45	14	24	16	1.84
47130--47338	47	4.5	46	80	6	156	41	17	20	21	1.91
47155--47374	47	4.7	47	81	2	192	40	17	20	20	1.91
47155--47374	94	2.4	93	77	5	230	40	17	20	20	1.91
49184--49232	14	3.3	14	75	25	55	55	10	6	28	1.57
49187--49238	16	3.3	15	73	26	54	57	7	7	26	1.54
50996--51033	13	2.9	13	84	11	51	34	13	15	36	1.87
59304--59328	13	1.9	13	100	0	50	36	16	16	32	1.90
59369--59435	33	2.0	33	88	0	98	40	13	11	34	1.81
59391--59415	13	1.9	13	100	0	50	32	16	16	36	1.90
62466--62542	35	2.2	35	81	9	86	7	19	0	72	1.08
62464--62541	34	2.3	33	81	14	88	7	20	0	71	1.10
63828--64202	79	4.8	78	78	4	369	32	13	25	28	1.94
63828--64203	158	2.4	156	82	4	452	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64142--64265	50	2.5	50	85	1	149	38	13	20	26	1.90
66594--66654	13	5.2	13	70	22	62	40	13	16	29	1.86
66605--66643	20	2.0	20	89	0	60	41	12	17	28	1.87
67214--67875	61	10.8	61	82	5	721	28	18	27	25	1.98
67234--67875	62	10.5	61	84	3	754	28	18	27	25	1.98
67211--67875	246	2.7	244	87	1	920	28	18	27	26	1.98
72063--72107	21	2.1	21	84	8	56	53	4	20	22	1.63
73909--73939	15	2.1	15	93	0	53	48	16	22	12	1.80
75301--75353	20	2.7	20	100	0	106	39	15	18	26	1.90
75341--75365	13	1.9	13	100	0	50	36	16	16	32	1.90
75409--75459	20	2.6	19	84	6	66	45	13	9	31	1.76
76200--76484	49	5.7	52	77	10	188	33	16	23	26	1.95
76307--76492	48	4.1	43	78	11	201	31	16	24	27	1.96
76512--76635	28	4.3	27	82	9	124	16	16	29	37	1.91
76538--76855	30	10.6	30	77	11	181	26	15	28	29	1.96
76626--76699	35	2.1	34	87	2	103	37	9	29	22	1.86
76678--76851	29	5.9	29	81	7	181	25	17	29	27	1.97

Tables:   1

The End!