genome.fa.s1289.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1289
Parameters: 2 7 7 80 10 50 1000
Length:  61336

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2932--2965	6	5.7	6	100	0	68	50	0	0	50	1.00
3036--3085	19	2.6	18	81	9	55	62	0	0	38	0.96
3033--3122	39	2.4	37	80	14	98	57	3	0	38	1.15
6798--6858	31	1.9	32	86	3	88	60	13	4	21	1.51
8021--8053	6	5.7	6	85	7	50	3	15	0	81	0.80
8021--8053	11	2.8	12	86	9	50	3	15	0	81	0.80
14585--14650	6	11.0	6	78	18	66	59	0	0	40	0.98
14680--14718	19	2.0	20	90	5	62	41	5	0	53	1.23
17424--17466	16	2.7	15	86	13	59	79	2	0	18	0.85
26198--26232	18	1.9	18	88	0	52	85	5	8	0	0.73
26177--26227	21	2.4	22	83	12	70	86	7	5	0	0.71
26184--26234	16	3.3	15	81	8	57	86	5	7	0	0.71
27234--27344	31	3.7	31	89	9	176	27	28	18	25	1.98
27231--27344	59	1.9	60	92	5	196	26	28	18	27	1.98
27287--28362	34	32.1	34	78	13	963	20	33	12	33	1.91
27510--27560	26	1.9	27	96	4	95	23	37	17	21	1.94
27543--28360	71	11.8	69	84	9	882	20	33	12	33	1.90
27322--28360	142	7.7	136	82	11	1116	20	33	12	33	1.91
27996--28049	27	2.0	27	88	0	81	25	35	16	22	1.95
28432--29351	49	18.7	49	75	15	726	24	25	17	32	1.96
28631--28809	92	1.9	94	91	3	299	25	23	17	32	1.97
28723--28860	52	2.6	52	82	3	159	25	23	15	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28898--29308	43	9.0	44	81	11	488	25	25	18	31	1.98
28898--29351	92	4.9	92	98	0	836	24	24	18	31	1.97
30276--30342	33	2.0	33	88	0	98	34	11	13	40	1.81
30296--30320	13	1.9	13	100	0	50	36	16	16	32	1.90
30386--30410	13	1.9	13	100	0	50	32	16	16	36	1.90
30419--30539	52	2.3	52	97	0	224	34	18	18	28	1.94
37723--37764	11	3.6	11	87	6	57	90	4	4	0	0.55
37732--37771	14	2.9	14	88	3	55	90	5	5	0	0.57
38769--38879	31	3.7	31	89	9	176	27	28	18	25	1.98
38766--38879	59	1.9	60	92	5	196	26	28	18	27	1.98
38822--39896	34	32.1	34	78	12	968	20	33	12	33	1.91
39045--39096	27	1.9	27	96	0	95	23	38	17	21	1.93
38857--39894	71	15.4	69	84	9	1098	20	33	12	33	1.91
39530--39583	27	2.0	27	88	0	81	25	35	16	22	1.95
39966--40885	49	18.7	49	75	15	726	24	25	17	32	1.96
40165--40343	92	1.9	94	91	3	299	25	23	17	32	1.97
40257--40394	52	2.6	52	82	3	159	25	23	15	34	1.95
40432--40842	43	9.0	44	81	11	488	25	25	18	31	1.98
40432--40885	92	4.9	92	98	0	836	24	24	18	31	1.97
41812--41878	33	2.0	33	88	0	98	34	11	13	40	1.81
41832--41856	13	1.9	13	100	0	50	36	16	16	32	1.90
41922--41946	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41955--42075	52	2.3	52	97	0	224	34	18	18	28	1.94
49256--49299	1	44.0	1	83	0	52	90	4	4	0	0.53
49256--49299	12	3.7	12	87	9	63	90	4	4	0	0.53
49256--49299	22	2.0	22	90	4	70	90	4	4	0	0.53
49257--49306	15	3.3	15	85	2	64	88	6	6	0	0.65
50305--50415	31	3.7	31	88	9	167	27	28	18	25	1.98
50302--50415	59	1.9	60	91	5	187	27	28	17	27	1.98
50358--51435	34	32.1	34	78	13	974	20	33	12	33	1.91
50581--50632	27	1.9	27	96	0	95	23	38	17	21	1.93
50393--51433	71	15.4	69	85	9	1111	20	33	12	33	1.90
51068--51121	27	2.0	27	88	0	81	25	35	16	22	1.95
50358--51433	241	4.6	237	81	12	1158	20	33	12	33	1.91
51505--52424	49	18.7	49	75	15	726	24	25	17	32	1.96
51704--51882	92	1.9	94	91	3	299	25	23	17	32	1.97
51796--51933	52	2.6	52	82	3	159	25	23	15	34	1.95
51971--52381	43	9.0	44	81	11	488	25	25	18	31	1.98
51971--52424	92	4.9	92	98	0	836	24	24	18	31	1.97
53350--53416	33	2.0	33	88	0	98	34	11	13	40	1.81
53370--53394	13	1.9	13	100	0	50	36	16	16	32	1.90
53460--53484	13	1.9	13	100	0	50	32	16	16	36	1.90
53493--53613	52	2.3	52	97	0	224	34	18	18	28	1.94
60303--60374	28	2.6	28	84	0	81	23	19	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60363--60699	52	6.4	52	71	15	203	32	12	25	29	1.93
60364--60699	104	3.2	103	70	11	295	32	12	25	29	1.93
60515--60587	27	2.6	28	84	2	94	21	21	32	23	1.98
60298--60699	212	1.9	212	89	3	621	31	13	26	28	1.94

Tables:   1

The End!