Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3652842
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 48564 characters in sequence are not A, C, G, or T
File 1 of 23
Found at i:120 original size:1 final size:1
Alignment explanation
Indices: 116--163 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
106 CTTTTCTCTC
* * * * *
116 TTTTTCTTTGTTTTGTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
164 GAAGAGAAGG
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.90
Consensus pattern (1 bp):
T
Found at i:129 original size:10 final size:9
Alignment explanation
Indices: 116--164 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
106 CTTTTCTCTC
*
116 TTTTTCTTT
1 TTTTTGTTT
*
125 GTTTTGTTT
1 TTTTTGTTT
*
134 TTTGT-TTT
1 TTTTTGTTT
142 TTTTTGTTT
1 TTTTTGTTT
151 TTTTT-TTT
1 TTTTTGTTT
159 TTTTTG
1 TTTTTG
165 AAGAGAAGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
8 15 0.45
9 18 0.55
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:146 original size:17 final size:17
Alignment explanation
Indices: 126--164 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
116 TTTTTCTTTG
126 TTTTGTTTTTTGTTTTT
1 TTTTGTTTTTTGTTTTT
*
143 TTTTGTTTTTTTTTTTT
1 TTTTGTTTTTTGTTTTT
160 TTTTG
1 TTTTG
165 AAGAGAAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (17 bp):
TTTTGTTTTTTGTTTTT
Found at i:147 original size:22 final size:20
Alignment explanation
Indices: 116--163 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
106 CTTTTCTCTC
*
116 TTTTTCTTTGTTTTGTTTTTT
1 TTTTTTTTTGTTTT-TTTTTT
137 GTTTTTTTTTGTTTTTTTTTT
1 -TTTTTTTTTGTTTTTTTTTT
158 TTTTTT
1 TTTTTT
164 GAAGAGAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 6 0.24
21 6 0.24
22 13 0.52
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.90
Consensus pattern (20 bp):
TTTTTTTTTGTTTTTTTTTT
Found at i:12908 original size:51 final size:51
Alignment explanation
Indices: 12743--12915 Score: 177
Period size: 52 Copynumber: 3.4 Consensus size: 51
12733 GATGAAATAA
* * * * *
12743 CGAGGTTGGAGTATCCTCAATTGTGAAAAATTGGTAT-TTTTGGAAATAAAAT
1 CGAGGTTGGAGTATCCCCGATTGTGGAAAA-TCG-ATGTTTTGGAAATAAAAC
* ** * * * *
12795 CGAAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGC
1 CGAGGTTGGAGTATCCCCGATT-GTGGAAAATCGATGTTTTGGAAATAAAAC
* * *
12847 CGGGGGTGGAGTATCCCCGATTGTGGAAAATCGATGATTTGGAAATAAAAC
1 CGAGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTTTTGGAAATAAAAC
12898 CGAGGTTGGAGTATCCCC
1 CGAGGTTGGAGTATCCCC
12916 TCGGAGATAA
Statistics
Matches: 96, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
51 39 0.41
52 52 0.54
53 5 0.05
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (51 bp):
CGAGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTTTTGGAAATAAAAC
Found at i:13041 original size:27 final size:27
Alignment explanation
Indices: 12980--13056 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
12970 ATAAAGCCGA
* **
12980 GGGTTGGAGTATCCCCTCAAAAATAACG
1 GGGTTGGAGTATCCCC-GATGAATAACG
*
13008 GGGTTGGAGTATCCCCGATGATTAACG
1 GGGTTGGAGTATCCCCGATGAATAACG
13035 GGGTTGGAGTATCCCCGATGAA
1 GGGTTGGAGTATCCCCGATGAA
13057 AAATTGATGT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 28 0.64
28 16 0.36
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (27 bp):
GGGTTGGAGTATCCCCGATGAATAACG
Found at i:13120 original size:51 final size:51
Alignment explanation
Indices: 13056--13153 Score: 121
Period size: 51 Copynumber: 1.9 Consensus size: 51
13046 TCCCCGATGA
* *
13056 AAAATTGATGTTTT-AGAAATAAAATCGGAGTT-GGAGTATCCTCGATTATAG
1 AAAATTGATGTTTTGA-AAATAAAATCAGAGTTGGGA-TATCCCCGATTATAG
*
13107 AAAATT-AGTGTTTTGAAAATGAAATCAGAGTTGGGATATCCCCGATT
1 AAAATTGA-TGTTTTGAAAATAAAATCAGAGTTGGGATATCCCCGATT
13154 GCGGAGAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
50 1 0.02
51 36 0.88
52 4 0.10
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (51 bp):
AAAATTGATGTTTTGAAAATAAAATCAGAGTTGGGATATCCCCGATTATAG
Found at i:15264 original size:13 final size:13
Alignment explanation
Indices: 15246--15271 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15236 ACAAAGATCC
15246 ATGTATCGATACA
1 ATGTATCGATACA
15259 ATGTATCGATACA
1 ATGTATCGATACA
15272 TTTCCTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:15313 original size:13 final size:13
Alignment explanation
Indices: 15295--15378 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
15285 AGCTTCCTAG
15295 CGATACATTGTAT
1 CGATACATTGTAT
15308 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
15327 CGATACATTGTAT
1 CGATACATTGTAT
*
15340 TGATACAAAACTTATGTAT
1 CGATAC---A--T-TGTAT
15359 CGATACATTGTAT
1 CGATACATTGTAT
15372 CGATACA
1 CGATACA
15379 ATACTTATGT
Statistics
Matches: 57, Mismatches: 2, Indels: 24
0.69 0.02 0.29
Matches are distributed among these distances:
13 27 0.47
14 1 0.02
15 2 0.04
16 4 0.07
17 2 0.04
18 1 0.02
19 20 0.35
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:15327 original size:19 final size:19
Alignment explanation
Indices: 15303--15399 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
15293 AGCGATACAT
15303 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
15322 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
15335 TGTATTGATACAAAACTTA
1 TGTATCGATACAAAACTTA
15354 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
15367 TGTATCGATACAATACTTA
1 TGTATCGATACAAAACTTA
15386 TGTATCGATACAAA
1 TGTATCGATACAAA
15400 TCGCTGAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 24
0.70 0.03 0.27
Matches are distributed among these distances:
13 21 0.33
14 2 0.03
16 4 0.06
18 2 0.03
19 34 0.54
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:15336 original size:32 final size:32
Alignment explanation
Indices: 15295--15397 Score: 188
Period size: 32 Copynumber: 3.2 Consensus size: 32
15285 AGCTTCCTAG
15295 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
15327 CGATACATTGTATTGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
15359 CGATACATTGTATCGATACAATACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
15391 CGATACA
1 CGATACA
15398 AATCGCTGAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:15461 original size:21 final size:21
Alignment explanation
Indices: 15435--15477 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
15425 GTTGGGACTT
*
15435 TGTATCGATACATTTGTATAA
1 TGTATCGATACATTTGGATAA
15456 TGTATCGATACATTTGGATAA
1 TGTATCGATACATTTGGATAA
15477 T
1 T
15478 TTTGTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTTGGATAA
Found at i:16916 original size:21 final size:21
Alignment explanation
Indices: 16864--16917 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
16854 TGGTAGAAGA
16864 TGATGAGAA-TTGATGTGTTTT
1 TGATGA-AATTTGATGTGTTTT
16885 TGATGAAATTTGATGTGTTTT
1 TGATGAAATTTGATGTGTTTT
16906 TGATGAAATTTG
1 TGATGAAATTTG
16918 GCTGGGATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 2 0.06
21 30 0.94
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (21 bp):
TGATGAAATTTGATGTGTTTT
Found at i:19705 original size:13 final size:13
Alignment explanation
Indices: 19687--19712 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19677 TACACACAAG
19687 ATGTATCGATACA
1 ATGTATCGATACA
19700 ATGTATCGATACA
1 ATGTATCGATACA
19713 TCCCAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:19730 original size:33 final size:32
Alignment explanation
Indices: 19669--19732 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
19659 CTTAACTGTT
19669 TGTATCGATACACACAAGATGTATCGATACAA
1 TGTATCGATACACACAAGATGTATCGATACAA
*
19701 TGTATCGATACATCCCAA-ATTGTATCGATACA
1 TGTATCGATACA-CACAAGA-TGTATCGATACA
19733 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACACAAGATGTATCGATACAA
Found at i:25874 original size:13 final size:13
Alignment explanation
Indices: 25856--25887 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
25846 TCTCTGTATT
*
25856 GATACATTATATC
1 GATACACTATATC
25869 GATACACTATATC
1 GATACACTATATC
25882 GATACA
1 GATACA
25888 AAGGGTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (13 bp):
GATACACTATATC
Found at i:26055 original size:20 final size:20
Alignment explanation
Indices: 26020--26060 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
26010 AAATTTCTTG
26020 TTTTTCACTTCAAAATACATCA
1 TTTTTCAC-TCAAAAT-CATCA
26042 TTTTTCAC-CAAAATCATCA
1 TTTTTCACTCAAAATCATCA
26061 ACAAAAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 6 0.32
22 8 0.42
ACGTcount: A:0.37, C:0.24, G:0.00, T:0.39
Consensus pattern (20 bp):
TTTTTCACTCAAAATCATCA
Found at i:28332 original size:20 final size:19
Alignment explanation
Indices: 28300--28338 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
28290 AGGTCAAAAC
*
28300 CCTTAAATGTATCGATACA
1 CCTTAAATATATCGATACA
28319 CCTTCAAATATATCGATACA
1 CCTT-AAATATATCGATACA
28339 TAATGCACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (19 bp):
CCTTAAATATATCGATACA
Found at i:28479 original size:13 final size:13
Alignment explanation
Indices: 28461--28486 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28451 TACACACAAG
28461 ATGTATCGATACA
1 ATGTATCGATACA
28474 ATGTATCGATACA
1 ATGTATCGATACA
28487 TCCCAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:28504 original size:33 final size:32
Alignment explanation
Indices: 28443--28506 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
28433 CTTAACTGTT
28443 TGTATCGATACACACAAGATGTATCGATACAA
1 TGTATCGATACACACAAGATGTATCGATACAA
*
28475 TGTATCGATACATCCCAA-ATTGTATCGATACA
1 TGTATCGATACA-CACAAGA-TGTATCGATACA
28507 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACACAAGATGTATCGATACAA
Found at i:40014 original size:17 final size:18
Alignment explanation
Indices: 39975--40022 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
39965 ATAATGCACT
*
39975 ATGTATTGATACAATTCA
1 ATGTATTGATACAATACA
*
39993 A-GTATTTAT-CAATACA
1 ATGTATTGATACAATACA
*
40009 ATGTATCGATACAA
1 ATGTATTGATACAA
40023 ACTGAGTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
16 7 0.29
17 13 0.54
18 4 0.17
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (18 bp):
ATGTATTGATACAATACA
Found at i:41507 original size:20 final size:21
Alignment explanation
Indices: 41476--41519 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
41466 TACCACTGTT
*
41476 CATGATTGAATTGTATCGATA
1 CATGATTGAATTCTATCGATA
41497 CATGA-TGAATTCTATCGATA
1 CATGATTGAATTCTATCGATA
41517 CAT
1 CAT
41520 TGAGCCCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (21 bp):
CATGATTGAATTCTATCGATA
Found at i:43662 original size:21 final size:21
Alignment explanation
Indices: 43638--43687 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
43628 GAAAGAAGAT
43638 AATAAAAAATTAACTAA-TAAG
1 AATAAAAAATTAACTAAGT-AG
** *
43659 AATAATGAATTGACTAAGTAG
1 AATAAAAAATTAACTAAGTAG
43680 AATAAAAA
1 AATAAAAA
43688 TTTGCATGAC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.62, C:0.04, G:0.10, T:0.24
Consensus pattern (21 bp):
AATAAAAAATTAACTAAGTAG
Found at i:46718 original size:15 final size:13
Alignment explanation
Indices: 46689--46713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46679 AACCCTAGAA
46689 TGTATCGATACAT
1 TGTATCGATACAT
46702 TGTATCGATACA
1 TGTATCGATACA
46714 CATTGCTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:46728 original size:20 final size:20
Alignment explanation
Indices: 46703--46753 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
46693 TCGATACATT
46703 GTATCGATACACATTGCTTA
1 GTATCGATACACATTGCTTA
46723 GTATCGATACACATTGCTTA
1 GTATCGATACACATTGCTTA
46743 GTATCGATACA
1 GTATCGATACA
46754 TTGTATCGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (20 bp):
GTATCGATACACATTGCTTA
Found at i:46761 original size:13 final size:13
Alignment explanation
Indices: 46743--46767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46733 ACATTGCTTA
46743 GTATCGATACATT
1 GTATCGATACATT
46756 GTATCGATACAT
1 GTATCGATACAT
46768 ATTGATTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:46932 original size:20 final size:20
Alignment explanation
Indices: 46882--46924 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
46872 CAAAATTTCA
*
46882 AATGCATTGTATCGATACAT
1 AATGAATTGTATCGATACAT
*
46902 TATGAATTGTATCGATACAT
1 AATGAATTGTATCGATACAT
46922 AAT
1 AAT
46925 AGCATGTAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (20 bp):
AATGAATTGTATCGATACAT
Found at i:47368 original size:103 final size:103
Alignment explanation
Indices: 47189--47403 Score: 331
Period size: 103 Copynumber: 2.1 Consensus size: 103
47179 AGCCTTGTAA
* *
47189 AGGTCTATTAAGTTTGTAATTCTTTGGTTCATTGTGTAAGGTTGTTTTCAACCTTGTTTGCAATC
1 AGGTCTATTAAGTTTGTAATTCTTTGGTTCATTGTGTAAGGTTATATTCAACCTTGTTTGCAATC
* * *
47254 ACTTGAGAATTTAAGGTGTAATTCTTTGAGTGATTGAG
66 ACTTGAGAATTTAAGGTATAATTCTATGAGTGATTAAG
* *
47292 AGGTCTATTGAGTTTGTAATTGTTTGGTTCATTGTGTAAGGTTATATTCAACCTTGTTTGCAATC
1 AGGTCTATTAAGTTTGTAATTCTTTGGTTCATTGTGTAAGGTTATATTCAACCTTGTTTGCAATC
* **
47357 ATTTGAGAATTTGGGGTATAATTCTATGAGTGATTAAG
66 ACTTGAGAATTTAAGGTATAATTCTATGAGTGATTAAG
47395 AGGTTCTAT
1 AGG-TCTAT
47404 CTTAGCCTTG
Statistics
Matches: 101, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
103 96 0.95
104 5 0.05
ACGTcount: A:0.24, C:0.09, G:0.23, T:0.44
Consensus pattern (103 bp):
AGGTCTATTAAGTTTGTAATTCTTTGGTTCATTGTGTAAGGTTATATTCAACCTTGTTTGCAATC
ACTTGAGAATTTAAGGTATAATTCTATGAGTGATTAAG
Found at i:47460 original size:35 final size:34
Alignment explanation
Indices: 47393--47461 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
47383 TGAGTGATTA
* * *
47393 AGAGGTTCTATCTTAGCCTTGAAAAGTTAGGGAG
1 AGAGGTTCTATCTTAGCCGTAAAAAGATAGGGAG
*
47427 AGAGGTTTTATCTTAGCCCGTAAAAAGATAGGGAG
1 AGAGGTTCTATCTTAG-CCGTAAAAAGATAGGGAG
47462 GTTTCTATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 15 0.50
35 15 0.50
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.28
Consensus pattern (34 bp):
AGAGGTTCTATCTTAGCCGTAAAAAGATAGGGAG
Found at i:49411 original size:13 final size:13
Alignment explanation
Indices: 49393--49417 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49383 AGATTGCACA
49393 GTATCGATACATT
1 GTATCGATACATT
49406 GTATCGATACAT
1 GTATCGATACAT
49418 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:49430 original size:20 final size:21
Alignment explanation
Indices: 49405--49457 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
49395 ATCGATACAT
*
49405 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
49425 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
49446 TGTATCGATACA
1 TGTATCGATACA
49458 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:49559 original size:33 final size:32
Alignment explanation
Indices: 49501--49562 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
49491 TAACTGTTTG
*
49501 TATCGATACACACAATATGTATCGATACAATA
1 TATCGATACACACAAAATGTATCGATACAATA
*
49533 TATCGATACATCCCAAAATGTATCGATACA
1 TATCGATACA-CACAAAATGTATCGATACA
49563 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 10 0.37
33 17 0.63
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (32 bp):
TATCGATACACACAAAATGTATCGATACAATA
Found at i:55208 original size:47 final size:50
Alignment explanation
Indices: 55119--55216 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 50
55109 AGGGTCAAAT
* *
55119 TCTGGAAAAATTCCAGAATGTATCGATACAGGTTCAAATGTATCGATACA
1 TCTGGAAAAATTCCAGAATGTATCGATACAGATTCAAATGTATCAATACA
**
55169 TCTGGAAAAA-T-CAGAA-GTATCGATACAGCATTC-TCTGTATCAATACA
1 TCTGGAAAAATTCCAGAATGTATCGATACAG-ATTCAAATGTATCAATACA
55216 T
1 T
55217 TGTATCGATA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
47 24 0.56
48 8 0.19
49 1 0.02
50 10 0.23
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (50 bp):
TCTGGAAAAATTCCAGAATGTATCGATACAGATTCAAATGTATCAATACA
Found at i:55222 original size:13 final size:13
Alignment explanation
Indices: 55204--55241 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
55194 CAGCATTCTC
* *
55204 TGTATCAATACAT
1 TGTATCGATACAG
55217 TGTATCGATACAG
1 TGTATCGATACAG
55230 TGTATCGATACA
1 TGTATCGATACA
55242 AAGGGTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:57073 original size:22 final size:22
Alignment explanation
Indices: 57037--57129 Score: 82
Period size: 22 Copynumber: 4.0 Consensus size: 22
57027 TTTTGCAAAT
57037 AAATTTT-T-ATTAAGGGGGAG
1 AAATTTTATGATTAAGGGGGAG
57057 AAATTTTATGATTAAGGGGGAGAAAG
1 AAATTTTATGATTAA-GGGG-G--AG
* * *
57083 AAATATGTGATTATTTAGGGGGAG
1 AAAT-T-TTATGATTAAGGGGGAG
*
57107 AAATTTTATGATTAAAGGGGAG
1 AAATTTTATGATTAAGGGGGAG
57129 A
1 A
57130 GAAAAGAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
20 7 0.12
21 1 0.02
22 19 0.33
23 5 0.09
24 7 0.12
26 7 0.12
27 5 0.09
28 7 0.12
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.31
Consensus pattern (22 bp):
AAATTTTATGATTAAGGGGGAG
Found at i:57694 original size:13 final size:13
Alignment explanation
Indices: 57676--57700 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57666 AGATTGCACA
57676 GTATCGATACATT
1 GTATCGATACATT
57689 GTATCGATACAT
1 GTATCGATACAT
57701 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:57713 original size:20 final size:21
Alignment explanation
Indices: 57688--57740 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
57678 ATCGATACAT
*
57688 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
57708 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
57729 TGTATCGATACA
1 TGTATCGATACA
57741 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:61836 original size:26 final size:27
Alignment explanation
Indices: 61807--61857 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
61797 ATTTTTAATT
*
61807 GAAA-AACGGGGTTGGAGTATCCCCTC
1 GAAAGAACAGGGTTGGAGTATCCCCTC
* *
61833 GAAAGAATAGGGTTGGAGTGTCCCC
1 GAAAGAACAGGGTTGGAGTATCCCC
61858 GATGATGACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.19
27 17 0.81
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (27 bp):
GAAAGAACAGGGTTGGAGTATCCCCTC
Found at i:64194 original size:20 final size:20
Alignment explanation
Indices: 64171--64218 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
64161 TAGAATATAT
* *
64171 CGATACATTCATACATGTAA
1 CGATACATTCAAAAATGTAA
* * *
64191 CGATATATTGAAAAATGTAT
1 CGATACATTCAAAAATGTAA
64211 CGATACAT
1 CGATACAT
64219 CAGGGTATGA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (20 bp):
CGATACATTCAAAAATGTAA
Found at i:64212 original size:40 final size:39
Alignment explanation
Indices: 64141--64218 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
64131 GGTAAAAAGA
* * *
64141 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTAACGATACATTGAAAAATATATCGATACATT
* *
64180 CATACATGTAACGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTAACGATACATTGAAAAATATATCGATACAT
64219 CAGGGTATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTAACGATACATTGAAAAATATATCGATACATT
Found at i:65275 original size:229 final size:226
Alignment explanation
Indices: 64731--67033 Score: 3105
Period size: 229 Copynumber: 10.0 Consensus size: 226
64721 ACAGTGGTGA
* * *
64731 TTTGAAAAGGGTTGCCATTGACTTGCATGGGCTTTAAAAGGGTGCCACTGACTTGCGTGGGCTTT
1 TTTG-AAAGGG-TGCCACTGACTTG--TGGGCTTTGAAAGGGTGCCACTAACTT--GTGGGCTTT
** * * *
64796 GAAAGAATGCCACTAACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGAGTG
60 GAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTG
* *
64861 CCACTGACTTGTGGGCTTTGAAAAG-GTACCACTGACTTGCGAGAGCTTT-AAAAGGAGTGCCAC
125 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG-G-GCTTTGAAAA-GAGTGCCAC
*
64924 TGACTTGTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGC
187 TGAC-T-TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGC
* * * * * *
64966 TTTGAAAGAGTGCCACTGAATTGTGGGCTTCGCAATGGTGCCACTAACTTGTGGGCTTCGAAAGG
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGG
* *
65031 GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTG
66 GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTG
* *
65096 ACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTAAAAAGAGTGCCACTGACTTGTG
131 ACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
*
65161 GGCTTTGAAAGGAGTGCCACTGACTTGTGGGG
196 GGCTTTGAAAGG-GTGCCACTGACTTGTGGGC
* * *
65193 TTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTAATTTGTGGGCTTTGAAAA
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTG-AAA
* * * * *
65258 GAGTGCCATTGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCA
64 GGGTGCCACTAACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCA
* * * *
65323 CTGAGTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCATTGATTT
128 CTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT
65387 GTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
193 GTGGGCTTTGAAAGG-GTGCCACTGACTTGTGGGC
*
65422 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGAGCTTTGAAAG
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAG
* * * * * * *
65487 GAGTGCCACTGACCTGTGGGCTTTGAAAGAGTGCCACTCACTTGTGGGCTTCGAAAGGGTGCCAT
65 G-GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCAC
* * ** *
65552 TGACTTGTGGGCTCTG-AAAGGGTGCCACAAACTTGCGTGAGCTTT-AAAAGGAGTGCCACTGAC
129 TGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT--GTGGGCTTTGAAAA-GAGTGCCACTGAC
*
65615 TTGTGTGGGCTTTAAAAGGGTGCCACTGAAC-TGTGGGC
191 -T-TGTGGGCTTTGAAAGGGTGCCACTG-ACTTGTGGGC
* * * * * *
65653 TTTGAAAGAGTGCCACTGAATTGTGGGCTTCGCAATGGTGCCACTGACTTGTGGGCTTTGAAAGG
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGG
*
65718 GTGCCACTAATTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACT
66 GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACT
* * *
65783 GATTTTTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGT
130 GACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGT
* *
65848 GGGCTTTGAAAGGGTGCCACTAACTTATGGGC
195 GGGCTTTGAAAGGGTGCCACTGACTTGTGGGC
* * * *
65880 TTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAG
1 TTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAG
* *
65945 GAGTGCCACTGACTTGTGCGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCA
65 G-GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCA
* * * * * *
66010 CTGATTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGCGGGCTTCGAAAGGAGTGCCACAGACTT
128 CTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT
* *
66075 GTGGGCTTTGAAAGGGTGCCACTAACTTCTGGGC
193 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGC
* *
66109 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTCTGAAAG
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAG
* * * *
66174 GGTGCCACTAACTTGCGGGCTCTGAAAGGGTGCCACTAACTTGCGTGGGCTTTAAAAGGAGTGCC
65 GGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTT--GTGGGCTTTGAAA-GAGTGCC
*
66239 ACTGACTTGTGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGA
127 ACTGAC-T-TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGA
* * * * * *
66302 ATTATGGGCTTCGCAATGGTGCCACTAACTTGTGGGC
190 CTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGC
*
66339 TTCGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGG
1 TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGG
* * *
66404 GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCAC
66 GTGCCACTAACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCAC
* * * *
66469 TGACTTGTGGGCTTTGAAAGGAGTGCCAATGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTG
129 TGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
* *
66533 TGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGC
194 TGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGC
* *
66567 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAA
1 TTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTAACTTGTGGGCTTTGAAA
*
66632 GGGTGCCACTAAGTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCA
64 GGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCA
* * *
66697 CTGATTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTT
128 CTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT
* *
66762 GTCGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
193 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGC
* *
66796 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCTCTGACTTGTGGGCTTTGAAAA
1 TTTGAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTG-AAA
* * * *
66861 GGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTCGAAAGGGTGCCGC
64 GGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCAC
* * * * *
66926 TGACTTGTGCGCTTCG-AAAGGGTGCCGCTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTG
129 TGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG
66990 TGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGC
194 TGGGCTTTGAAAGG-GTGCCACTGACTTGTGGGC
67024 TTTGAAAGGG
1 TTTGAAAGGG
67034 ATGAACATTC
Statistics
Matches: 1854, Mismatches: 178, Indels: 80
0.88 0.08 0.04
Matches are distributed among these distances:
226 27 0.01
227 187 0.10
228 324 0.17
229 841 0.45
230 340 0.18
231 88 0.05
232 27 0.01
233 11 0.01
234 5 0.00
235 4 0.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (226 bp):
TTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGG
GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTG
ACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
GGCTTTGAAAGGGTGCCACTGACTTGTGGGC
Found at i:67031 original size:29 final size:29
Alignment explanation
Indices: 64743--67032 Score: 3142
Period size: 28 Copynumber: 79.9 Consensus size: 29
64733 TGAAAAGGGT
* *
64743 TGCCATTGACTTGCATGGGCTTTAAAAGG-G
1 TGCCACTGACTTG--TGGGCTTTGAAAGGAG
*
64773 TGCCACTGACTTGCGTGGGCTTTGAAA-GAA
1 TGCCACTGACTT--GTGGGCTTTGAAAGGAG
* * *
64803 TGCCACTAACTCGTGGGCTTTGAAAAGA-
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
64831 TGCCACTGACTTGTGGGCTTTGAAA-GAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
64859 TGCCACTGACTTGTGGGCTTTGAAAAG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * *
64887 TACCACTGACTTGCGAGAGCTTTAAAAGGAG
1 TGCCACTGACTTGTG-G-GCTTTGAAAGGAG
*
64918 TGCCACTGACTTGTGTGGGCTTTAAAAGG-G
1 TGCCACTGAC-T-TGTGGGCTTTGAAAGGAG
64948 TGCCACTGACTTGTGGGCTTTGAAA-GAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * * *
64976 TGCCACTGAATTGTGGGCTTCGCAATG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
65004 TGCCACTAACTTGTGGGCTTCGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65032 TGCCACTAACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65060 TGCCACTAACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65088 TGCCACTGACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * *
65117 TGCCACTGATTTGTGGGCTTTAAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
65146 TGCCACTGACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65175 TGCCACTGACTTGTGGGGTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
65203 TGCCACTAACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * *
65232 TGCCACTAATTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65261 TGCCATTGACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65290 TGCCACTAACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65318 TGCCACTGAGTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65346 TGCCACTGACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
65375 TGCCATTGATTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
65404 TGCCACTGACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
65433 TGCCACTGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
65461 TGCCACTAACTTGTGAGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65490 TGCCACTGACCTGTGGGCTTTGAAA-GAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
65518 TGCCACTCACTTGTGGGCTTCGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
65546 TGCCATTGACTTGTGGGCTCTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
** * *
65574 TGCCACAAACTTGCGTGAGCTTTAAAAGGAG
1 TGCCACTGACTT--GTGGGCTTTGAAAGGAG
*
65605 TGCCACTGACTTGTGTGGGCTTTAAAAGG-G
1 TGCCACTGAC-T-TGTGGGCTTTGAAAGGAG
65635 TGCCACTGAAC-TGTGGGCTTTGAAA-GAG
1 TGCCACTG-ACTTGTGGGCTTTGAAAGGAG
* * * *
65663 TGCCACTGAATTGTGGGCTTCGCAATG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
65691 TGCCACTGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
65719 TGCCACTAATTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65747 TGCCACTGACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * *
65776 TGCCACTGATTTTTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
65805 TGCCACTGACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
65834 TGCCACTGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * *
65862 TGCCACTAACTTATGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65891 TGCCACTGATTTGTGGGCTTTGAAA-GAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
65919 TGCCACTGACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65948 TGCCACTGACTTGTGCGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
65976 TGCCACTGACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66005 TGCCACTGATTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66034 TGCCACTGACTTGCGGGCTTCGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66063 TGCCACAGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66091 TGCCACTAACTTCTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
66120 TGCCACTGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66148 TGCCACTGACTTGTGGGCTCTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * *
66176 TGCCACTAACTTGCGGGCTCTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66204 TGCCACTAACTTGCGTGGGCTTTAAAAGGAG
1 TGCCACTGACTT--GTGGGCTTTGAAAGGAG
*
66235 TGCCACTGACTTGTGTGGGCTTTAAAAGG-G
1 TGCCACTGAC-T-TGTGGGCTTTGAAAGGAG
66265 TGCCACTGACTTGTGGGCTTTGAAA-GAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * * * *
66293 TGCCACTGAATTATGGGCTTCGCAATG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66321 TGCCACTAACTTGTGGGCTTCGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
66349 TGCCACTGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66377 TGCCACTAACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66405 TGCCACTGACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66434 TGCCACTGATTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
66463 TGCCACTGACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66492 TGCCAATGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66520 TGCCACTAACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66549 TGCCACTGATTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
66578 TGCCACTGACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
66607 TGCCACTGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66635 TGCCACTAAGTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66663 TGCCACTGACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66692 TGCCACTGATTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
66721 TGCCACTGACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66750 TGCCACTGACTTGTCGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66778 TGCCACTAACTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
66807 TGCCACTGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66835 TGCCTCTGACTTGTGGGCTTTGAAAAGG-G
1 TGCCACTGACTTGTGGGCTTTG-AAAGGAG
66864 TGCCACTGACTTGTGGGCTTTGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66892 TGCCACTGACTTGTGGGCTTCGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* * *
66920 TGCCGCTGACTTGTGCGCTTCGAAAGG-G
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
* *
66948 TGCCGCTGACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
*
66977 TGCCACTGATTTGTGGGCTTTGAAAGGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGAG
67006 TGCCACTGACTTGTGGGCTTTGAAAGG
1 TGCCACTGACTTGTGGGCTTTGAAAGG
67033 GATGAACATT
Statistics
Matches: 2047, Mismatches: 168, Indels: 91
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.00
28 1000 0.49
29 864 0.42
30 96 0.05
31 71 0.03
32 5 0.00
33 5 0.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTGAAAGGAG
Found at i:68253 original size:1 final size:1
Alignment explanation
Indices: 68249--68312 Score: 74
Period size: 1 Copynumber: 64.0 Consensus size: 1
68239 TTTTTTGCTA
* * * * * *
68249 TTTTTTTCTTTTTTTTTTTGTTTTTTTGTTTTGTTTTTTTTGTTTTTTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
68313 GGGTGTAAAG
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.91
Consensus pattern (1 bp):
T
Found at i:68285 original size:24 final size:23
Alignment explanation
Indices: 68239--68313 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
68229 GACGCTTCTA
* *
68239 TTTTTTGCTATTTTTTT-CTTTTT
1 TTTTTTG-TTTTTTTTTGTTTTTT
68262 TTTTTTG--TTTTTTTGTTTTGTT
1 TTTTTTGTTTTTTTTTGTTTT-TT
68284 TTTTTTGTTTTTTTTTGTTTTTT
1 TTTTTTGTTTTTTTTTGTTTTTT
68307 TTTTTTG
1 TTTTTTG
68314 GGTGTAAAGG
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
20 7 0.15
21 3 0.06
22 9 0.19
23 16 0.34
24 12 0.26
ACGTcount: A:0.01, C:0.03, G:0.09, T:0.87
Consensus pattern (23 bp):
TTTTTTGTTTTTTTTTGTTTTTT
Found at i:68286 original size:32 final size:32
Alignment explanation
Indices: 68249--68313 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
68239 TTTTTTGCTA
*
68249 TTTTTTTCTTTTTTTTTTTGTTTTTTTGTTTTG
1 TTTTTTT-TGTTTTTTTTTGTTTTTTTGTTTTG
*
68282 TTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTG
1 TTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTG
68314 GGTGTAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 23 0.77
33 7 0.23
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (32 bp):
TTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTG
Found at i:70573 original size:15 final size:16
Alignment explanation
Indices: 70547--70576 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
70537 TTAAAGGATG
70547 ACCAAGCACTGGCGGT
1 ACCAAGCACTGGCGGT
70563 ACCAA-CACTGGCGG
1 ACCAAGCACTGGCGG
70577 GTTTGACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.33, G:0.30, T:0.10
Consensus pattern (16 bp):
ACCAAGCACTGGCGGT
Found at i:81400 original size:23 final size:23
Alignment explanation
Indices: 81374--81430 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
81364 TGGACATGTT
81374 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
81397 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
81420 AAAAATGCATG
1 AAAAATGCATG
81431 GTCAAAGGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.63, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:83458 original size:21 final size:21
Alignment explanation
Indices: 83409--83458 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
83399 GTTTGTTGTT
*
83409 GATG-ATTTTGATGAAAAATA
1 GATGAATTTTCATGAAAAATA
*
83429 GA-GAGTTTTCATGCAAAAA-A
1 GATGAATTTTCATG-AAAAATA
83449 GATGAATTTT
1 GATGAATTTT
83459 GAAAAAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
19 1 0.04
20 12 0.50
21 11 0.46
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.34
Consensus pattern (21 bp):
GATGAATTTTCATGAAAAATA
Found at i:84382 original size:20 final size:20
Alignment explanation
Indices: 84357--84412 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
84347 ATGTGTCGAT
84357 ATAATGTATCGATACAAAGC
1 ATAATGTATCGATACAAAGC
* *
84377 ATAATGAATCGATAAAAAGC
1 ATAATGTATCGATACAAAGC
*
84397 ATAATGTATCAATACA
1 ATAATGTATCGATACA
84413 TCTAGATGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.25
Consensus pattern (20 bp):
ATAATGTATCGATACAAAGC
Found at i:86804 original size:21 final size:20
Alignment explanation
Indices: 86759--86806 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
86749 TTTGAAAAAT
86759 ATTTTGATGGAAAATAGAGA
1 ATTTTGATGGAAAATAGAGA
*
86779 GTTTTGATGTGAAAAT-GATGA
1 ATTTTGATG-GAAAATAGA-GA
86800 ATTTTGA
1 ATTTTGA
86807 AAAGGATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (20 bp):
ATTTTGATGGAAAATAGAGA
Found at i:94799 original size:9 final size:9
Alignment explanation
Indices: 94785--94812 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
94775 TGACAGTTCT
94785 CCCATCATG
1 CCCATCATG
94794 CCCATCATG
1 CCCATCATG
94803 CCCATCATG
1 CCCATCATG
94812 C
1 C
94813 TCACTTGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.46, G:0.11, T:0.21
Consensus pattern (9 bp):
CCCATCATG
Found at i:94911 original size:27 final size:26
Alignment explanation
Indices: 94822--96520 Score: 1614
Period size: 27 Copynumber: 62.8 Consensus size: 26
94812 CTCACTTGAA
* * *
94822 GTGCCACTGACTTGTGGGCTTTGAAAAG
1 GTGCCACGGAGTTGTGGAC-TT-AAAAG
* * *
94850 GTACCACGAAGTTGTGGATTTTGAAAAG
1 GTGCCACGGAGTTGTGGA-CTT-AAAAG
94878 GTGCCACGGAGTTGTGGACTTTAAAAG
1 GTGCCACGGAGTTGTGGAC-TTAAAAG
* *
94905 GTGCCACAGAGTTGGGGACTTAAAAAG
1 GTGCCACGGAGTTGTGGACTT-AAAAG
94932 GTGCCACGGAGTTGTGGACTTAAAAAG
1 GTGCCACGGAGTTGTGGACTT-AAAAG
* *
94959 GTGCCATGGAGTTGTGGTCTTTAAAAG
1 GTGCCACGGAGTTGTGGAC-TTAAAAG
94986 GTTGCCACGGAGTTGTGGACTTAAAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAG
*
95013 GTTCCCACGGAGTTGTGGACTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
*
95041 GTGGCACGGAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* ** *
95067 GTTGTCGTGGAGTTGTGGGCTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
** *
95095 GTATCACGAAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
*
95121 GTTGCCATGGAGTTGTGGACTTAAAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAG
*
95148 GTTGCCATGGAGTTGTAGG-CTTAAAAGG
1 G-TGCCACGGAGTTGT-GGACTTAAAA-G
95176 GTGCCACGGAGTTGTGGACTT-AAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
*
95201 GTTGCCACGGAGTTGTGGGCTTTAAAAG
1 G-TGCCACGGAGTTGTGGAC-TTAAAAG
* *
95229 GTGCCACAGAGTTATGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
*
95255 GTTGCCACGGAGTTGTGGGCTTTAAAAG
1 G-TGCCACGGAGTTGTGGAC-TTAAAAG
*
95283 GTGCCACGGAGTTATGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
*
95309 GTTGCCACGGAGTTGTGGGCTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
* *
95337 GTGCGACGGAGTTGTGAACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* * *
95363 GTTTCCACGAAGTTGTGGATTTAAAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAG
* * * *
95390 TGTGCCATGGACTTGTTGACATAAAAG
1 -GTGCCACGGAGTTGTGGACTTAAAAG
* * *
95417 GTTGCAAAGGAGTTGTGGGCTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
*
95445 GTGCCACGGAGTGGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAA-G
* *
95472 GTGGCGCGGAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* * *
95498 GTTGTCATGGAGTTGTGGGCTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
** *
95526 GTATCACGAAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* *
95552 GTTGCCATGGAGTTGCGGACTTAAAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAG
*
95579 GTTGCCATGGAGTTGTAGG-CTTAAAAAG
1 G-TGCCACGGAGTTGT-GGACTT-AAAAG
95607 GTGCCACGGAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* *
95633 GTTGCCACGGAGTTGTGGGCTTTAAAAA
1 G-TGCCACGGAGTTGTGGAC-TTAAAAG
*
95661 GTGCCACGGAGTTATGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
*
95687 GTTGCCACGGAGTTGTGGGCTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
*
95715 GTGCGACGGAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* * *
95741 GTTTCCACGAAGTTGTGGATTTAAAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAG
* * * *
95768 TGTGCCATGGAGTTGTTGACATAAACG
1 -GTGCCACGGAGTTGTGGACTTAAAAG
* *
95795 GTTGCCAAGGAGTTGTGGGCTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
*
95823 GTGCCATGGAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
95849 GTTGCCACGGAGTTGTGGGA-TTAAAAGG
1 G-TGCCACGGAGTTGT-GGACTTAAAA-G
** *
95877 GTAACACAGAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
*
95903 GTTGCCATGGAGTTGTGGA-TATAAAAG
1 G-TGCCACGGAGTTGTGGACT-TAAAAG
95930 GTTGCCACGGAGTTGTAGG-CTTAAAAGG
1 G-TGCCACGGAGTTGT-GGACTTAAAA-G
*
95958 GTGCCATGGAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* **
95984 GTTACCACAAAGTTGTGGACTTAAAAAG
1 G-TGCCACGGAGTTGTGGACTT-AAAAG
* **
96012 GTGCTATAGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAA-G
* ** *
96039 GTGCTATAGAGTTGTGGACCTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* *
96065 GTTGCCACGGAGTTATGGGCTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
* * *
96093 GTGCCATGGAATTATGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
*
96119 GTTGCCACAGAGTTGTGGACTTAAAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAG
** *
96146 GTTGCCATAGAGTTGTGGGCTTAAAAAGAG
1 G-TGCCACGGAGTTGTGGACTT--AAA-AG
* * * *
96176 GTGGCACGGAGTTATGAACTAAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* *
96202 TTTGCCACGAAGTTGTGGACTTAAAAGG
1 -GTGCCACGGAGTTGTGGACTTAAAA-G
** *
96230 GTGCCGTGGAGTTGTGGACTTGAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
*
96256 ATTGCCACGGAGTTGTCGG-CTTAAAAG
1 -GTGCCACGGAGTTGT-GGACTTAAAAG
* *
96283 GTTGCCACGAAGTTGTTGACTTAAAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAG
*
96310 GTTGCCACGGAGTTGTGGGCTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAA-G
* * *
96338 GTACCACGAAGTTGTGAACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* *
96364 GTTGCCACGGAGTTGTGGACATCAAAGG
1 G-TGCCACGGAGTTGTGGAC-TTAAAAG
**
96392 GTGCCATAGAGTTGTGGACTTAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAG
* * *
96418 GTTACCACAGAGTTGTGGGCTTAAAAG
1 G-TGCCACGGAGTTGTGGACTTAAAAG
*
96445 GTTGCCACAGAGTTGTGGACTTAAATAG
1 G-TGCCACGGAGTTGTGGACTTAAA-AG
* * *
96473 TTACCACGGAGTTGTGGGCTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAA-G
* *
96500 GTGCCAC-AAGTTTTGGACTTA
1 GTGCCACGGAGTTGTGGACTTA
96521 TCGTGGACTT
Statistics
Matches: 1399, Mismatches: 204, Indels: 138
0.80 0.12 0.08
Matches are distributed among these distances:
25 2 0.00
26 113 0.08
27 1129 0.81
28 136 0.10
29 16 0.01
30 3 0.00
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (26 bp):
GTGCCACGGAGTTGTGGACTTAAAAG
Found at i:97944 original size:21 final size:19
Alignment explanation
Indices: 97920--97961 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
97910 TTCCCTTTCC
97920 TTATTTTACTTTTGCACTTTT
1 TTATTTTACTTTT-CA-TTTT
*
97941 TTATTTTTCTTTTCATTTT
1 TTATTTTACTTTTCATTTT
97960 TT
1 TT
97962 GTGCTTTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 12 0.60
ACGTcount: A:0.12, C:0.12, G:0.02, T:0.74
Consensus pattern (19 bp):
TTATTTTACTTTTCATTTT
Found at i:102845 original size:97 final size:97
Alignment explanation
Indices: 102693--102928 Score: 346
Period size: 97 Copynumber: 2.4 Consensus size: 97
102683 TTTTTGAATG
* * * *
102693 AAAAACGGGGTTGGAGTATCCCTTCGGAGGAATGGGGGGTTGGAGTGTCCCCGATGATGACAATT
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAAT--GGGGTTGAAGTGTCCACGATGATGACAATT
102758 TAAGTGAGAATAAAATTTAAAATTTGATGCGTTT
64 TAAGTGAGAATAAAATTTAAAATTTGATGCGTTT
* * *
102792 AAAAGCGGAGTTGGAGTATCCCCTCGGAGAAATGGGGTTGAAGTGTCCACGATGATGATAATTTA
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGAAGTGTCCACGATGATGACAATTTA
* * *
102857 AGTGAGAATAAGATTTAAACTTTGATGTGTTT
66 AGTGAGAATAAAATTTAAAATTTGATGCGTTT
* *
102889 AAAAGCGGGGTTGGAGTATCCCCTCAGAGGAATAGGGTTG
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTG
102929 GAGTATTCCC
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
97 94 0.76
99 29 0.24
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.28
Consensus pattern (97 bp):
AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGAAGTGTCCACGATGATGACAATTTA
AGTGAGAATAAAATTTAAAATTTGATGCGTTT
Found at i:105111 original size:20 final size:20
Alignment explanation
Indices: 105086--105280 Score: 79
Period size: 20 Copynumber: 8.7 Consensus size: 20
105076 TTTTAATTAG
105086 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
105106 ATGTATCGATACATCTGAGAAAAAAGATAGA
1 ATGTATCGATACAT-T--G-----A-A-A-A
105137 ATGTATCGATACATT-AAAGA
1 ATGTATCGATACATTGAAA-A
* * * * *
105157 ATATATCGCTACATTCATAC
1 ATGTATCGATACATTGAAAA
*
105177 ATGTATCGATACAATG-AAA
1 ATGTATCGATACATTGAAAA
105196 ATGTATCGATACATATGGGTAAAAAGATAGA
1 ATGTATCGATACAT-T--G-----A-A-A-A
*
105227 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
105247 ATGTATCGATACATTTATAC
1 ATGTATCGATACATTGAAAA
105267 ATGTATCGATACAT
1 ATGTATCGATACAT
105281 CTGGGTAAAA
Statistics
Matches: 135, Mismatches: 16, Indels: 48
0.68 0.08 0.24
Matches are distributed among these distances:
19 14 0.10
20 74 0.55
21 4 0.03
22 3 0.02
23 2 0.01
28 2 0.01
29 2 0.01
30 4 0.03
31 30 0.22
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:105240 original size:90 final size:91
Alignment explanation
Indices: 105086--105279 Score: 309
Period size: 90 Copynumber: 2.1 Consensus size: 91
105076 TTTTAATTAG
* *
105086 ATGTATCGATACATTGAAAAATGTATCGATACATCTGAGAAAAAAGATAGAATGTATCGATACAT
1 ATGTATCGATACAATGAAAAATGTATCGATACATATGAGAAAAAAGATAGAATGTATCGATACAT
*
105151 TAAAGAATATATCGCTACATTCATAC
66 TAAAGAATATATCGATACATTCATAC
* *
105177 ATGTATCGATACAATG-AAAATGTATCGATACATATGGGTAAAAAGATAGAATGTATCGATACAT
1 ATGTATCGATACAATGAAAAATGTATCGATACATATGAGAAAAAAGATAGAATGTATCGATACAT
* * *
105241 TGAAGAATGTATCGATACATTTATAC
66 TAAAGAATATATCGATACATTCATAC
105267 ATGTATCGATACA
1 ATGTATCGATACA
105280 TCTGGGTAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
90 80 0.84
91 15 0.16
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (91 bp):
ATGTATCGATACAATGAAAAATGTATCGATACATATGAGAAAAAAGATAGAATGTATCGATACAT
TAAAGAATATATCGATACATTCATAC
Found at i:115968 original size:18 final size:19
Alignment explanation
Indices: 115924--115973 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
115914 CACACCCAGA
115924 TGTATCGATACATATTGCTT
1 TGTATCGATACATATT-CTT
* *
115944 GGTATCGATACATGTT-TT
1 TGTATCGATACATATTCTT
115962 TGTATCGATACA
1 TGTATCGATACA
115974 CCATAAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 13 0.48
20 14 0.52
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATATTCTT
Found at i:118767 original size:8 final size:8
Alignment explanation
Indices: 118754--118780 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
118744 TATCTTGTTG
118754 TTTATATC
1 TTTATATC
118762 TTTATATC
1 TTTATATC
118770 TTTATATC
1 TTTATATC
118778 TTT
1 TTT
118781 TAACAACAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTATATC
Found at i:120017 original size:79 final size:79
Alignment explanation
Indices: 119906--120494 Score: 537
Period size: 79 Copynumber: 7.5 Consensus size: 79
119896 TGGAGTATAT
* * * * * *
119906 TCCCCGATGGTGGAAAACTAATGTTTTGGAAATTAAACTAGGGTTGGAGTATCCCCTCAAAAATA
1 TCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCCTCAAAAATA
*
119971 ACGATGTTGGAGTA
66 ACGAGGTTGGAGTA
* * * ***
119985 TCCCCGATTGTGAAAAATTGATGTCTTAGAAATAAAACTGGGGTTAGAGTAGT-TTTTCAAAAAT
1 TCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTA-TCCCCTCAAAAAT
* *
120049 AATGAGGTTAGAGTA
65 AACGAGGTTGGAGTA
* * * * * * * *
120064 TCCCCGATTATGGAAAATCGGTATTTTGGAAATAAAACTAGGGTTCGAGTATCCCCTTAAAAATA
1 TCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCCTCAAAAATA
*
120129 ACGGGGTTGGAGTA
66 ACGAGGTTGGAGTA
* * * * * *
120143 TCCCCGATTGTGGAAAATT-AGTGTTTTAGAAA-AAAAATCGAGGTTGGAGTATCCCTTAAAAAA
1 TCCCCGATTGTGAAAAATTGA-TGTTTTGGAAATAAAACT-GGGGTTGGAGTATCCCCTCAAAAA
* **
120206 TAA-TAGGATTAAAGTA
64 TAACGAGG-TTGGAGTA
* * * * **
120222 ACCCCGATTGTGAAAAATAGATGTTTTGGAAATAAAGCTGGGGTTGGAGTATTCCCTCGGAAATA
1 TCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCCTCAAAAATA
120287 ACGAGGTTGGAGTA
66 ACGAGGTTGGAGTA
* * * ** *
120301 TCCCAGATTATGAAAAA-TCAGTGTTTTGGAAATAAAA-TCGGGGTTGGAGTATCCCCTTGAAAG
1 TCCCCGATTGTGAAAAATTGA-TGTTTTGGAAATAAAACT-GGGGTTGGAGTATCCCCTCAAAAA
120364 TAAC-AGGGTTGGA-TA
64 TAACGA-GGTTGGAGTA
* * * * * *
120379 TCCCCAATTATGAAAAATCGATGTTCTGGAAATAAAACCGGGGTTGGAGTATCCCCTCAAACATA
1 TCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCCTCAAAAATA
* * *
120444 ATGGGGTTAGAGTA
66 ACGAGGTTGGAGTA
* * * *
120458 TCCCCGATGGTGGAAAATTGATATTTTAGAAATAAAA
1 TCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAA
120495 ACATAAATGA
Statistics
Matches: 403, Mismatches: 92, Indels: 30
0.77 0.18 0.06
Matches are distributed among these distances:
78 72 0.18
79 322 0.80
80 9 0.02
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (79 bp):
TCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCCTCAAAAATA
ACGAGGTTGGAGTA
Found at i:120205 original size:158 final size:156
Alignment explanation
Indices: 119926--120495 Score: 610
Period size: 158 Copynumber: 3.6 Consensus size: 156
119916 TGGAAAACTA
* *
119926 ATGTTTTGGAAATTAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGATGTTGGAGTATCCCCG
1 ATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCG
* * * **
119991 ATTGTGAAAAATTGATGTCTTAGAAATAAAA-CTGGGGTTAGAGTAGT-TTTTCAAAAATAATGA
66 ATTGTGAAAAATTGATGTTTTAGAAAAAAAATC-GGGGTTGGAGTA-TCCCTT-AAAAATAAT-A
*
120054 GGTTAGAGTATCCCCGATTATGGAAAATCG
127 GGTTAGAGTATCCCCGATTATGAAAAATCG
* * * * *
120084 GTATTTTGGAAATAAAACTAGGGTTCGAGTATCCCCTTAAAAATAACGGGGTTGGAGTATCCCCG
1 ATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCG
* *
120149 ATTGTGGAAAATT-AGTGTTTTAGAAAAAAAATCGAGGTTGGAGTATCCCTTAAAAAATAATAGG
66 ATTGTGAAAAATTGA-TGTTTTAGAAAAAAAATCGGGGTTGGAGTATCCCTT-AAAAATAATAGG
* * * *
120213 ATTAAAGTAACCCCGATTGTGAAAAATAG
129 -TTAGAGTATCCCCGATTATGAAAAATCG
* * * ** *
120242 ATGTTTTGGAAATAAAGCTGGGGTTGGAGTATTCCCTCGGAAATAACGAGGTTGGAGTATCCCAG
1 ATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCG
* * * * * * *
120307 ATTATGAAAAA-TCAGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTTGAAAGTAACAGG
66 ATTGTGAAAAATTGA-TGTTTTAGAAAAAAAATCGGGGTTGGAGTAT-CCCTTAAAAATAATA-G
* *
120371 GTTGGA-TATCCCCAATTATGAAAAATCG
128 GTTAGAGTATCCCCGATTATGAAAAATCG
* ** * * * *
120399 ATGTTCTGGAAATAAAACCGGGGTTGGAGTATCCCCTCAAACATAATGGGGTTAGAGTATCCCCG
1 ATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCG
* * *
120464 ATGGTGGAAAATTGATATTTTAGAAATAAAAA
66 ATTGTGAAAAATTGATGTTTTAGAAA-AAAAA
120496 CATAAATGAA
Statistics
Matches: 340, Mismatches: 63, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
157 95 0.28
158 237 0.70
159 8 0.02
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (156 bp):
ATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCG
ATTGTGAAAAATTGATGTTTTAGAAAAAAAATCGGGGTTGGAGTATCCCTTAAAAATAATAGGTT
AGAGTATCCCCGATTATGAAAAATCG
Found at i:120330 original size:237 final size:234
Alignment explanation
Indices: 119906--120494 Score: 662
Period size: 237 Copynumber: 2.5 Consensus size: 234
119896 TGGAGTATAT
* * * * *
119906 TCCCCGATGGTGGAAAACTAATGTTTTGGAAATTAAACTAGGGTTGGAGTATCCCCTCAAAAATA
1 TCCCCGATTGTGGAAAAATAGTGTTTTGGAAATAAAACGA-GGTTGGAGTATCCCCTCAAAAATA
* * * *
119971 ACGATGTTGGAGTATCCCCGATTGTGAAAAATTGATGTCTTAGAAATAAAACTGGGGTTAGAGTA
65 A-TAGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACTGGGGTTAGAGTA
** * * * *
120036 GTTTTTCAAAAATAATGAGGTTAGAGTATCCCCGATTATGGAAAATCGGTATTTTGGAAATAAAA
129 GTTCCTCAAAAATAACGAGGTTAGAGTATCCCAGATTATGAAAAATCAGTATTTTGGAAATAAAA
*
120101 -CTAGGGTTCGAGTATCCCCTTAAAAATAACGGGGTTGGAGTA
194 TC-AGGGTTCGAGTATCCCCTTAAAAATAACAGGGTTGGA-TA
* * * * *
120143 TCCCCGATTGTGGAAAATTAGTGTTTTAGAAAAAAAATCGAGGTTGGAGTATCCCTTAAAAAATA
1 TCCCCGATTGTGGAAAAATAGTGTTTTGGAAATAAAA-CGAGGTTGGAGTATCCCCTCAAAAATA
* * * * * *
120208 ATAGGATTAAAGTAACCCCGATTGTGAAAAATAGATGTTTTGGAAATAAAGCTGGGGTTGGAGTA
65 ATAGG-TTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACTGGGGTTAGAGTA
** * *
120273 -TTCCCTCGGAAATAACGAGGTTGGAGTATCCCAGATTATGAAAAATCAGTGTTTTGGAAATAAA
129 GTT-CCTCAAAAATAACGAGGTTAGAGTATCCCAGATTATGAAAAATCAGTATTTTGGAAATAAA
* * * *
120337 ATCGGGGTTGGAGTATCCCCTTGAAAGTAACAGGGTTGGATA
193 ATCAGGGTTCGAGTATCCCCTTAAAAATAACAGGGTTGGATA
* * * * * *
120379 TCCCCAATTAT-GAAAAATCGATGTTCTGGAAATAAAACCGGGGTTGGAGTATCCCCTCAAACAT
1 TCCCCGATTGTGGAAAAATAG-TGTTTTGGAAATAAAA-CGAGGTTGGAGTATCCCCTCAAAAAT
* * * *
120443 AATGGGGTTAGAGTATCCCCGATGGTGGAAAATTGATATTTTAGAAATAAAA
64 AAT-AGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAA
120495 ACATAAATGA
Statistics
Matches: 291, Mismatches: 55, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
235 7 0.02
236 90 0.31
237 191 0.66
238 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (234 bp):
TCCCCGATTGTGGAAAAATAGTGTTTTGGAAATAAAACGAGGTTGGAGTATCCCCTCAAAAATAA
TAGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACTGGGGTTAGAGTAGT
TCCTCAAAAATAACGAGGTTAGAGTATCCCAGATTATGAAAAATCAGTATTTTGGAAATAAAATC
AGGGTTCGAGTATCCCCTTAAAAATAACAGGGTTGGATA
Found at i:122947 original size:50 final size:51
Alignment explanation
Indices: 122840--122961 Score: 149
Period size: 51 Copynumber: 2.4 Consensus size: 51
122830 AAAAATGCTT
* * * * * *
122840 GAATGTATCGATAC-ATAGAGAAATGTATCGATATATCTGGGTTAAAACCCA
1 GAATGTATCGATACAAT-GAAAAATCTATCAATAAATCTGAGCTAAAACCCA
122891 GAATGTATCGATACAATGAAAAATCTATCAATAAATCT-AGCTAAAACCCA
1 GAATGTATCGATACAATGAAAAATCTATCAATAAATCTGAGCTAAAACCCA
* *
122941 TAATGTATCAATACAATGAAA
1 GAATGTATCGATACAATGAAA
122962 GATGTATCGA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 29 0.47
51 31 0.50
52 2 0.03
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (51 bp):
GAATGTATCGATACAATGAAAAATCTATCAATAAATCTGAGCTAAAACCCA
Found at i:132752 original size:105 final size:104
Alignment explanation
Indices: 132564--132901 Score: 251
Period size: 105 Copynumber: 3.2 Consensus size: 104
132554 GATTGGAGTA
* * * *
132564 GGGAATATATAATGTTTAAAATATAATTGCTTTTTAAGATGGTTAATAGCAATTAATGTGATTCG
1 GGGAATATATAAGGTTTAAAAT-TAATAGCTTTTTAAGATGGTTAATAGCAATTAATGTAATTCA
* * *
132629 AAAAGTTTATAAAGATATGATTGAAGATTTT-AAGACAATG
65 AAAACTTCATAAAGATATGATAGAA-ATTTTGAAGACAATG
* * * *
132669 GGGAATATATAAGGTTTAAAATTAATAAGGTTTTTTAGATGGTTAATAGTAGTTAATGTAATTCC
1 GGGAATATATAAGGTTTAAAATTAAT-AGCTTTTTAAGATGGTTAATAGCAATTAATGTAATT-C
* **
132734 AAAAAACTTCA-AAA-ATATGATAGAACTTTTGACTACAATG
64 -AAAAACTTCATAAAGATATGATAGAAATTTTGAAGACAATG
* * * * * ** * *
132774 GGAAATACATAGGGTTTAAAATTAAATCA-TTTTTTAATATGGTTCGTAG-AATTAATCTAGTTT
1 GGGAATATATAAGGTTTAAAATT-AAT-AGCTTTTTAAGATGGTTAATAGCAATTAATGTA-ATT
* ** * * * * **
132837 TAAAAA--AAATACAAGATATGATA-CACTTGTCACTACAATG
63 CAAAAACTTCATA-AAGATATGATAGAAATTTTGAAGACAATG
132877 GGGAATATATAAGGTTTAAAATTAA
1 GGGAATATATAAGGTTTAAAATTAA
132902 ATTATTTTTT
Statistics
Matches: 189, Mismatches: 35, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
101 1 0.01
102 3 0.02
103 41 0.22
104 24 0.13
105 105 0.56
106 8 0.04
107 7 0.04
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.36
Consensus pattern (104 bp):
GGGAATATATAAGGTTTAAAATTAATAGCTTTTTAAGATGGTTAATAGCAATTAATGTAATTCAA
AAACTTCATAAAGATATGATAGAAATTTTGAAGACAATG
Found at i:132945 original size:104 final size:103
Alignment explanation
Indices: 132663--133017 Score: 331
Period size: 105 Copynumber: 3.4 Consensus size: 103
132653 AGATTTTAAG
* * *
132663 ACAATGGGGAATATATAAGGTTTAAAATT-AATAAGGTTTTTT-AGATGGTTAATAGTAGTTAAT
1 ACAATGGGGAATATATAAGGTTTAAAATTAAATTA--TTTTTTAAAATGGTTAATA-AAGTTAAT
* * * * * *
132726 GTAATTC-CAAAAAACTTCAAAAATATGATAGAACTTTTGACT
63 CTAATTCTAAAAAAAATAC-AAGATATGATA-AACTTATGACT
* * * * * **
132768 ACAATGGGAAATACATAGGGTTTAAAATTAAATCATTTTTTAATATGGTTCGTAGAA-TTAATCT
1 ACAATGGGGAATATATAAGGTTTAAAATTAAATTATTTTTTAAAATGGTTAATA-AAGTTAATCT
* * * * *
132832 AGTTTTAAAAAAAATACAAGATATGATACACTTGTCACT
65 AATTCTAAAAAAAATACAAGATATGATAAACTTATGACT
*
132871 ACAATGGGGAATATATAAGGTTTAAAATTAAATTATTTTTTAAAATAGTTAATAACAGTTAATCT
1 ACAATGGGGAATATATAAGGTTTAAAATTAAATTATTTTTTAAAATGGTTAATAA-AGTTAATCT
* * * * *
132936 AACTCTAAAAAGAATACAAGATAAGATAAAAGTTATGGCT
65 AATTCTAAAAAAAATACAAGATATGAT-AAACTTATGACT
** * *
132976 GTAATGGGGAATATATAAGGTTTAAAATAAAACTATTTTTTA
1 ACAATGGGGAATATATAAGGTTTAAAATTAAATTATTTTTTA
133018 TAAGGTAGTG
Statistics
Matches: 204, Mismatches: 40, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
102 1 0.00
103 55 0.27
104 54 0.26
105 90 0.44
106 4 0.02
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.35
Consensus pattern (103 bp):
ACAATGGGGAATATATAAGGTTTAAAATTAAATTATTTTTTAAAATGGTTAATAAAGTTAATCTA
ATTCTAAAAAAAATACAAGATATGATAAACTTATGACT
Found at i:140083 original size:52 final size:52
Alignment explanation
Indices: 139937--140065 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
139927 CGAAATATGA
*
139937 AAATTTGCTTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * *
139989 AAATTTTCCTGTATGTATCGATACATTTCATAGTGTATCGATATATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
140041 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
140066 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:140092 original size:13 final size:13
Alignment explanation
Indices: 140074--140111 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
140064 CAAAGATCAG
140074 TGTATCGATACAA
1 TGTATCGATACAA
140087 TGTATCGATACAA
1 TGTATCGATACAA
*
140100 TGAATCGATACA
1 TGTATCGATACA
140112 TTTGAGTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:140192 original size:19 final size:18
Alignment explanation
Indices: 140168--140230 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
140158 ATACATACAT
140168 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
140187 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
140200 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
140219 TGTATCGATACA
1 TGTATCGATACA
140231 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:140201 original size:32 final size:32
Alignment explanation
Indices: 140162--140245 Score: 159
Period size: 32 Copynumber: 2.6 Consensus size: 32
140152 GTAGCGATAC
140162 ATACATTGTATCGATACAAAACTTATGTATCG
1 ATACATTGTATCGATACAAAACTTATGTATCG
*
140194 ATACATTGTATCGATACAACACTTATGTATCG
1 ATACATTGTATCGATACAAAACTTATGTATCG
140226 ATACATTGTATCGATACAAA
1 ATACATTGTATCGATACAAA
140246 TCGTTGAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (32 bp):
ATACATTGTATCGATACAAAACTTATGTATCG
Found at i:140205 original size:13 final size:13
Alignment explanation
Indices: 140187--140243 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
140177 ACAAAACTTA
140187 TGTATCGATACAT
1 TGTATCGATACAT
140200 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
140218 ATGTATCGATACAT
1 -TGTATCGATACAT
140232 TGTATCGATACA
1 TGTATCGATACA
140244 AATCGTTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:141678 original size:168 final size:168
Alignment explanation
Indices: 141289--141791 Score: 631
Period size: 168 Copynumber: 3.0 Consensus size: 168
141279 TTAGAAAGGA
* * *
141289 AAATTTCAAGG-AAAAAATTCAAAATTCATGAAAATGAATGAATTTTTGAAAATTGAATTAATAT
1 AAATTTCAAGGAAAAAAATTCAAAATTCATGGAAATGAATGAATTTTTGAAAACTAAATTAATAT
* * * *
141353 AAAATAAAT-ACTAATATTTGATGAATTTTAAAAATT-AAAAGCGAGAAAAATCCCCGTGAAAAA
66 GAAATAAATAAC-AATATTTGATGAATTTTAAAAATTAAAAAACAAGAAAAATCCCC-CGAAAAA
* * *
141416 ATTTGCGAAGTAAAAAACTCCGTATTTTGAAAAAAAAGGG
129 ATTTACGGAGTAAAAAACTCCGTATTTTGAAAAAAAAGAG
* * * *
141456 AAATTTCAA-GAAAAATATTCAAAATTTATGGACATGAATGAATTTTTGAAAACTAAATTAACAT
1 AAATTTCAAGGAAAAAAATTCAAAATTCATGGAAATGAATGAATTTTTGAAAACTAAATTAATAT
* *
141520 GAAATAAATAACAATATTTAATAAATTTTAAAAATTAAAAAACAAGAAAAATCTCCCCGAAAAAA
66 GAAATAAATAACAATATTTGATGAATTTTAAAAATTAAAAAACAAGAAAAATC-CCCCGAAAAAA
* * *
141585 ATTACGGAGTAGAAAACTCCGTGTTTCT-AAAAAAAAGAG
130 TTTACGGAGTAAAAAACTCCGTATTT-TGAAAAAAAAGAG
* * * *
141624 -AATTTCAAGGAAAAAAATTTAAAATTCATGGAAATGAATGAATTTTTTAAAACTAAATTATTGT
1 AAATTTCAAGGAAAAAAATTCAAAATTCATGGAAATGAATGAATTTTTGAAAACTAAATTAATAT
* * * * *
141688 GAAATAAATAATAATATTTGGTGAATTTTGAAAATCAAAATACAAGAAAAATCCCTCCGAAAAAA
66 GAAATAAATAACAATATTTGATGAATTTTAAAAATTAAAAAACAAGAAAAATCCC-CCGAAAAAA
** *
141753 TTTACGGAGTAAAAAACTCTATATTTCGAAAAAAGAAGA
130 TTTACGGAGTAAAAAACTCCGTATTTTGAAAAAA-AAGA
141792 ATTCCAAAAG
Statistics
Matches: 287, Mismatches: 40, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
166 1 0.00
167 95 0.33
168 183 0.64
169 8 0.03
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (168 bp):
AAATTTCAAGGAAAAAAATTCAAAATTCATGGAAATGAATGAATTTTTGAAAACTAAATTAATAT
GAAATAAATAACAATATTTGATGAATTTTAAAAATTAAAAAACAAGAAAAATCCCCCGAAAAAAT
TTACGGAGTAAAAAACTCCGTATTTTGAAAAAAAAGAG
Found at i:143224 original size:131 final size:132
Alignment explanation
Indices: 142992--143626 Score: 599
Period size: 131 Copynumber: 4.8 Consensus size: 132
142982 GGAAGCTGAT
* * * *
142992 TTGACTAGGGTGGTAACCATGCATCCAATTAGAATGAAAAGAATTTGACTAGGCTAG-TAACCAT
1 TTGACTAGGGTGGTAACCATACATCCAAGTAGAATGAAAAGAATCTGACTAGGGT-GTTAACCAT
* * * * *
143056 ACGTCAGATCTAAACGAAAAGAGTTTGACTAGGGTGGTAACCATATGTCAAATATGAATGAAAAG
65 ACGTTAGACCAAAATGAAAAGAGTTTGACTAGGGTGGTAACCATATGCCAAATATGAATGAAAAG
143121 AAC
130 AAC
* * * * * *
143124 CTAACTAGGGTGGTAACCATACAT-TAAGTAGGATGAAAAGAATTTGACTAGAGTGTTAACCATA
1 TTGACTAGGGTGGTAACCATACATCCAAGTAGAATGAAAAGAATCTGACTAGGGTGTTAACCATA
* * * ** * * *
143188 AGTTAGACCAAAATGAGAAGAGTTTGACCAAAGTGGTAACCATATGTCAAAT-TGGAAGGAAGTA
66 CGTTAGACCAAAATGAAAAGAGTTTGACTAGGGTGGTAACCATATGCCAAATAT-GAATGAA-AA
*
143252 TAA-
129 GAAC
* * * * * * * *
143255 TTGACCAAGGTGGTTACCATGCATCCAATTAGAATGAAAAGAATCTAACAAGGGTGGTAACCATA
1 TTGACTAGGGTGGTAACCATACATCCAAGTAGAATGAAAAGAATCTGACTAGGGTGTTAACCATA
* *
143320 CGTTAGACAAAAATGAGAAA-AGTTTGACTAGGGTGGTAACCATATGCCAAACATGAATGAAAAG
66 CGTTAGACCAAAATGA-AAAGAGTTTGACTAGGGTGGTAACCATATGCCAAATATGAATGAAAAG
143384 AAC
130 AAC
* * * * *
143387 TTGACCAGGGTAGTAACCATACGT-CAAGTAGGATGAAAAGAATCTGACCAGGGTGTTAACCATA
1 TTGACTAGGGTGGTAACCATACATCCAAGTAGAATGAAAAGAATCTGACTAGGGTGTTAACCATA
*** * *
143451 CGTTAGATTGAAATGAAAAGAGTTTGACTAGGGTGGTAACCATGCAT-CCAATTA-GAATGAAGA
66 CGTTAGACCAAAATGAAAAGAGTTTGACTAGGGTGGTAACCAT--ATGCCAAATATGAATGAAAA
*
143514 GAAT
129 GAAC
* * * * * * *
143518 TTGACTAGAGTGGTAACCATACAT-C-AGATCGAAATGAGAAGAGTTTGACCAGGGTGGTAACCA
1 TTGACTAGGGTGGTAACCATACATCCAAG-TAG-AATGAAAAGAATCTGACTAGGGTGTTAACCA
* * * **
143581 TATGTTA-AACATGAATGAAAAGAACTTGACTAGGGTGGTAACCATA
64 TACGTTAGACCA-AAATGAAAAGAGTTTGACTAGGGTGGTAACCATA
143627 CATCAAGTAG
Statistics
Matches: 411, Mismatches: 79, Indels: 28
0.79 0.15 0.05
Matches are distributed among these distances:
130 8 0.02
131 209 0.51
132 189 0.46
133 5 0.01
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (132 bp):
TTGACTAGGGTGGTAACCATACATCCAAGTAGAATGAAAAGAATCTGACTAGGGTGTTAACCATA
CGTTAGACCAAAATGAAAAGAGTTTGACTAGGGTGGTAACCATATGCCAAATATGAATGAAAAGA
AC
Found at i:143450 original size:219 final size:218
Alignment explanation
Indices: 143224--143965 Score: 841
Period size: 219 Copynumber: 3.4 Consensus size: 218
143214 ACCAAAGTGG
* * * * * *
143224 TAACCATATGTCAAATTGGAAGGAAGTATAATTGACCAAGGTGGTTACCATGCATCCAATTAGAA
1 TAACCATATGTCAGATTGAAATGAAG-AAAATTGACCAGGGTGGTAACCATGCATCCAATTAGAA
* * * * *
143289 TGAAAAGAATCTAACAAGGGTGGTAACCATACGTTAGA-CAAAAATGAGAAAAGTTTGACTAGGG
65 TGAAAAGAATTTGACAAGGGTGGTAACCATACGTCAGATC-AAAATGAGAAGAGTTTGACCAGGG
* *
143353 TGGTAACCATATGCCAAACATGAATGAAAAGAACTTGACCAGGGTAGTAACCATACGTCAAGTAG
129 TGGTAACCATATGTCAAACATGAATGAAAAGAACTTGACCAGGGTGGTAACCATACGTCAAGTAG
*
143418 GATGAAAAGAATCTGACCAGGGTGT
194 GATAAAAAGAATCTGACCAGGGTGT
* * * *
143443 TAACCATACGTTAGATTGAAATGAA-AAGAGTTTGACTAGGGTGGTAACCATGCATCCAATTAGA
1 TAACCATATGTCAGATTGAAATGAAGAA-A-ATTGACCAGGGTGGTAACCATGCATCCAATTAGA
* * * * *
143507 ATGAAGAGAATTTGACTAGAGTGGTAACCATACATCAGATCGAAATGAGAAGAGTTTGACCAGGG
64 ATGAAAAGAATTTGACAAGGGTGGTAACCATACGTCAGATCAAAATGAGAAGAGTTTGACCAGGG
* * *
143572 TGGTAACCATATGTTAAACATGAATGAAAAGAACTTGACTAGGGTGGTAACCATACATCAAGTAG
129 TGGTAACCATATGTCAAACATGAATGAAAAGAACTTGACCAGGGTGGTAACCATACGTCAAGTAG
143637 GATAAAAAGAATCTGACTC-GGGTGT
194 GATAAAAAGAATCTGAC-CAGGGTGT
* * *
143662 TAACCATATGTCCGATTGAAATG-AGAAAAGTTTGACCAGGGTGGTAACCATACAT-CAAATAGG
1 TAACCATATGTCAGATTGAAATGAAGAAAA--TTGACCAGGGTGGTAACCATGCATCCAATTA-G
* * * * * * *
143725 AAGGAAGCAG-ATTTGACCAGGGTGGTAATCATATGTCAAATCAAAATGAGAGGAGTTTGACCAG
63 AATGAA-AAGAATTTGACAAGGGTGGTAACCATACGTCAGATCAAAATGAGAAGAGTTTGACCAG
* * ** * *
143789 GGCGGTAACAATACATCAAACATGAATAAAAAGAACTTGACCAGGGTGGTAACCATACGTCAAGC
127 GGTGGTAACCATATGTCAAACATGAATGAAAAGAACTTGACCAGGGTGGTAACCATACGTCAAGT
* * *
143854 AAGATAAAAAGAATCTGACTAGGGTGG
192 AGGATAAAAAGAATCTGACCAGGGTGT
** * * * **
143881 TAACCATATGTCAGACCGAAAT-AAGAAGAGTTTGACCAGGGTGGTAACCATACATCAAACAAGA
1 TAACCATATGTCAGATTGAAATGAAGAA-A-ATTGACCAGGGTGGTAACCATGCATCCAATTAGA
* *
143945 ATGAAAAAAACTTGACCAAGG
64 ATGAAAAGAATTTGA-CAAGG
143966 TTGTAGACAC
Statistics
Matches: 440, Mismatches: 67, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
217 1 0.00
218 9 0.02
219 418 0.95
220 12 0.03
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (218 bp):
TAACCATATGTCAGATTGAAATGAAGAAAATTGACCAGGGTGGTAACCATGCATCCAATTAGAAT
GAAAAGAATTTGACAAGGGTGGTAACCATACGTCAGATCAAAATGAGAAGAGTTTGACCAGGGTG
GTAACCATATGTCAAACATGAATGAAAAGAACTTGACCAGGGTGGTAACCATACGTCAAGTAGGA
TAAAAAGAATCTGACCAGGGTGT
Found at i:143574 original size:263 final size:264
Alignment explanation
Indices: 142978--143626 Score: 758
Period size: 263 Copynumber: 2.5 Consensus size: 264
142968 ATTTTAAACA
*
142978 AGAAGGAAGCT-G-ATTTGACTAGGGTGGTAACCATGCATCCAATTAGAATGAAAAGAATTTGAC
1 AGAAGGAAG-TAGAATTTGACTAGAGTGGTAACCATGCATCCAATTAGAATGAAAAGAATTTGAC
* * * * * *
143041 TAGGCTAGTAACCATACGTCAGATC-TAAACGAAAAGAGTTTGACTAGGGTGGTAACCATATGTC
65 AAGGGTGGTAACCATACGTTAGA-CATAAATGAAAAGAGTTTGACTAGGGTGGTAACCATATGCC
* * * * *
143105 AAATATGAATGAAAAGAACCTAACTAGGGTGGTAACCATACATTAAGTAGGATGAAAAGAATTTG
129 AAACATGAATGAAAAGAACCTAACCAGGGTAGTAACCATACATCAAGTAGGATGAAAAGAATCTG
* * **
143170 ACTAGAGTGTTAACCATAAGTTAGACCAAAATGAGAAGAGTTTGACCAAAGTGGTAACCATATGT
194 ACCAGAGTGTTAACCATAAGTTAGACCAAAATGAAAAGAGTTTGACCAAAGTGGTAACCATACAT
143235 CAAATT
259 CAAATT
* * * * * *
143241 GGAAGGAAGTATAA-TTGACCA-AGGTGGTTACCATGCATCCAATTAGAATGAAAAGAATCTAAC
1 AGAAGGAAGTAGAATTTGACTAGA-GTGGTAACCATGCATCCAATTAGAATGAAAAGAATTTGAC
*
143304 AAGGGTGGTAACCATACGTTAGACAAAAATGAGAAA-AGTTTGACTAGGGTGGTAACCATATGCC
65 AAGGGTGGTAACCATACGTTAGACATAAATGA-AAAGAGTTTGACTAGGGTGGTAACCATATGCC
* * *
143368 AAACATGAATGAAAAGAACTTGACCAGGGTAGTAACCATACGTCAAGTAGGATGAAAAGAATCTG
129 AAACATGAATGAAAAGAACCTAACCAGGGTAGTAACCATACATCAAGTAGGATGAAAAGAATCTG
* * *** * ** *
143433 ACCAGGGTGTTAACCATACGTTAGATTGAAATGAAAAGAGTTTGACTAGGGTGGTAACCATGCAT
194 ACCAGAGTGTTAACCATAAGTTAGACCAAAATGAAAAGAGTTTGACCAAAGTGGTAACCATACAT
*
143498 CCAATT
259 CAAATT
* * * * *
143504 AGAATGAAG-AGAATTTGACTAGAGTGGTAACCATACAT-CAGA-TCGAAATGAGAAGAGTTTGA
1 AGAAGGAAGTAGAATTTGACTAGAGTGGTAACCATGCATCCA-ATTAG-AATGAAAAGAATTTGA
* * * * **
143566 CCAGGGTGGTAACCATATGTTAAACATGAATGAAAAGAACTTGACTAGGGTGGTAACCATA
64 CAAGGGTGGTAACCATACGTTAGACATAAATGAAAAGAGTTTGACTAGGGTGGTAACCATA
143627 CATCAAGTAG
Statistics
Matches: 322, Mismatches: 54, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
262 12 0.04
263 305 0.95
264 5 0.02
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.23
Consensus pattern (264 bp):
AGAAGGAAGTAGAATTTGACTAGAGTGGTAACCATGCATCCAATTAGAATGAAAAGAATTTGACA
AGGGTGGTAACCATACGTTAGACATAAATGAAAAGAGTTTGACTAGGGTGGTAACCATATGCCAA
ACATGAATGAAAAGAACCTAACCAGGGTAGTAACCATACATCAAGTAGGATGAAAAGAATCTGAC
CAGAGTGTTAACCATAAGTTAGACCAAAATGAAAAGAGTTTGACCAAAGTGGTAACCATACATCA
AATT
Found at i:143705 original size:131 final size:132
Alignment explanation
Indices: 143305--143714 Score: 365
Period size: 131 Copynumber: 3.1 Consensus size: 132
143295 GAATCTAACA
**
143305 AGGGTGGTAACCATACGTTAGACAA--AAATGAGAAA-AGTTTGACTAGGGTGGTAACCAT--AT
1 AGGGTGGTAACCATACGTTA-A-AATGAAATGA-AAAGAACTTGACTAGGGTGGTAACCATACAT
** * * * * * * *
143365 GCCAAACATGAATGAAAAGAA-CTTGACCAGGGTAGTAACCATACGTCA-AGTAG-GATGA-AAA
63 -CCAAGTA-GAATAAAAAGAATC-TGACTAGAGTGGTAACCATACATCAGA-TCGAAATGAGAAA
* *
143426 GAATCTGACC
124 -AGTTTGACC
* * * ** *
143436 AGGGTGTTAACCATACGTTAGATTGAAATGAAAAGAGTTTGACTAGGGTGGTAACCATGCATCCA
1 AGGGTGGTAACCATACGTTAAAATGAAATGAAAAGAACTTGACTAGGGTGGTAACCATACATCCA
* * * * *
143501 ATTAGAATGAAGAGAATTTGACTAGAGTGGTAACCATACATCAGATCGAAATGAGAAGAGTTTGA
66 AGTAGAATAAAAAGAATCTGACTAGAGTGGTAACCATACATCAGATCGAAATGAGAAAAGTTTGA
143566 CC
131 CC
*
143568 AGGGTGGTAACCATATGTTAAACATG-AATGAAAAGAACTTGACTAGGGTGGTAACCATACAT-C
1 AGGGTGGTAACCATACGTTAAA-ATGAAATGAAAAGAACTTGACTAGGGTGGTAACCATACATCC
* * * * ** * *
143631 AAGTAGGATAAAAAGAATCTGACTCGGGTGTTAACCATATGTCCGATTGAAATGAGAAAAGTTTG
65 AAGTAGAATAAAAAGAATCTGACTAGAGTGGTAACCATACATCAGATCGAAATGAGAAAAGTTTG
143696 ACC
130 ACC
143699 AGGGTGGTAACCATAC
1 AGGGTGGTAACCATAC
143715 ATCAAATAGG
Statistics
Matches: 232, Mismatches: 37, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
129 1 0.00
130 3 0.01
131 153 0.66
132 69 0.30
133 6 0.03
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (132 bp):
AGGGTGGTAACCATACGTTAAAATGAAATGAAAAGAACTTGACTAGGGTGGTAACCATACATCCA
AGTAGAATAAAAAGAATCTGACTAGAGTGGTAACCATACATCAGATCGAAATGAGAAAAGTTTGA
CC
Found at i:143741 original size:131 final size:132
Alignment explanation
Indices: 143465--143757 Score: 338
Period size: 131 Copynumber: 2.2 Consensus size: 132
143455 AGATTGAAAT
* * * * * *
143465 GAAAAGAGTTTGACTAGGGTGGTAACCATGCATCCAATTAGAATGAAGAGAATTTGACTAGAGTG
1 GAAAAGAATTTGACTAGGGTGGTAACCATACATCCAAGTAGAATAAAAAGAATCTGACTAGAGTG
* ** * *
143530 GTAACCATACATCAGATCGAAATGAGAAGAGTTTGACCAGGGTGGTAACCATATGTTAAACATGA
66 GTAACCATACATCAGATCGAAATGAGAAAAGTTTGACCAGGGTGGTAACCATACATCAAACAGGA
*
143595 AT
131 AG
* * * *
143597 GAAAAGAACTTGACTAGGGTGGTAACCATACAT-CAAGTAGGATAAAAAGAATCTGACTCGGGTG
1 GAAAAGAATTTGACTAGGGTGGTAACCATACATCCAAGTAGAATAAAAAGAATCTGACTAGAGTG
* ** * * *
143661 TTAACCATATGTCCGATTGAAATGAGAAAAGTTTGACCAGGGTGGTAACCATACATCAAATAGGA
66 GTAACCATACATCAGATCGAAATGAGAAAAGTTTGACCAGGGTGGTAACCATACATCAAACAGGA
143726 AG
131 AG
* * *
143728 GAAGCAG-ATTTGACCAGGGTGGTAATCATA
1 GAA-AAGAATTTGACTAGGGTGGTAACCATA
143758 TGTCAAATCA
Statistics
Matches: 134, Mismatches: 26, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
131 102 0.76
132 32 0.24
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (132 bp):
GAAAAGAATTTGACTAGGGTGGTAACCATACATCCAAGTAGAATAAAAAGAATCTGACTAGAGTG
GTAACCATACATCAGATCGAAATGAGAAAAGTTTGACCAGGGTGGTAACCATACATCAAACAGGA
AG
Found at i:143928 original size:131 final size:132
Alignment explanation
Indices: 143693--143962 Score: 348
Period size: 131 Copynumber: 2.1 Consensus size: 132
143683 TGAGAAAAGT
* * ** * *
143693 TTGACCAGGGTGGTAACCATACATCAAATAGGAAGGAAGCAGATTTGACCAGGGTGGTAATCATA
1 TTGACCAGGGTGGTAACCATACATCAAACAAGAAAAAAGCAGATCTGACCAGGGTGGTAACCATA
* * * *
143758 TGTCAAATCAAAATGAGAGGAGTTTGACCAGGGCGGTAACAATACATCAAACATGAAT-AAAAAG
66 TGTCAAACCAAAATAAGAAGAGTTTGACCAGGGCGGTAACAATACATCAAACAAGAATGAAAAA-
143822 AAC
130 AAC
* * *
143825 TTGACCAGGGTGGTAACCATACGTCAAGCAAGATAAAAAG-A-ATCTGACTAGGGTGGTAACCAT
1 TTGACCAGGGTGGTAACCATACATCAAACAAGA-AAAAAGCAGATCTGACCAGGGTGGTAACCAT
* * * *
143888 ATGTCAGACCGAAATAAGAAGAGTTTGACCAGGGTGGTAACCATACATCAAACAAGAATGAAAAA
65 ATGTCAAACCAAAATAAGAAGAGTTTGACCAGGGCGGTAACAATACATCAAACAAGAATGAAAAA
143953 AAC
130 AAC
143956 TTGACCA
1 TTGACCA
143963 AGGTTGTAGA
Statistics
Matches: 119, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
131 80 0.67
132 35 0.29
133 4 0.03
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.19
Consensus pattern (132 bp):
TTGACCAGGGTGGTAACCATACATCAAACAAGAAAAAAGCAGATCTGACCAGGGTGGTAACCATA
TGTCAAACCAAAATAAGAAGAGTTTGACCAGGGCGGTAACAATACATCAAACAAGAATGAAAAAA
AC
Found at i:143960 original size:44 final size:44
Alignment explanation
Indices: 142946--143962 Score: 540
Period size: 44 Copynumber: 23.2 Consensus size: 44
142936 AATGCAAATC
** * * **
142946 ATTTGACCAGGGTGGTAACCATATTTTAAACAAGAAGGAAGCTG-
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAA-AAGA
* * * * **
142990 ATTTGACTAGGGTGGTAACCATGCATCCAATTAGAATGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * * * * *
143034 ATTTGACTAGGCTAGTAACCATACGTCAGATCTA-AACGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCA-AACAAGAATGAAAAGA
* * * * *
143078 GTTTGACTAGGGTGGTAACCATATGTCAAATATGAATGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
** * * * * ** *
143122 ACCTAACTAGGGTGGTAACCATACAT-TAAGTAGGATGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * * * * * *
143165 ATTTGACTAGAGTGTTAACCATAAGTTAGACCAA-AATGAGAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCA-AACAAGAATGAAAAGA
* ** * *** * * *
143209 GTTTGACCAAAGTGGTAACCATATGTCAAATTGGAAGGAAGTATA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAA-AAGA
* * * * * **
143254 A-TTGACCAAGGTGGTTACCATGCATCCAATTAGAATGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * * * * *
143297 ATCTAACAAGGGTGGTAACCATACGTTAGACAAAAATGAGAAA-A
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGA-AAAGA
* * * * *
143341 GTTTGACTAGGGTGGTAACCATATGCCAAACATGAATGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * ** *
143385 ACTTGACCAGGGTAGTAACCATACGTC-AAGTAGGATGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * * * **
143428 ATCTGACCAGGGTGTTAACCATACGTTAGA-TTGAAATGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAG-AATGAAAAGA
* * * * * ** *
143472 GTTTGACTAGGGTGGTAACCATGCATCCAATTAGAATGAAGAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * * * * *
143516 ATTTGACTAGAGTGGTAACCATACATCAGATCGA-AATGAGAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCA-AACAAGAATGAAAAGA
* * * *
143560 GTTTGACCAGGGTGGTAACCATATGTTAAACATGAATGAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * * ** * *
143604 ACTTGACTAGGGTGGTAACCATACATC-AAGTAGGATAAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * * ** **
143647 ATCTGACTC-GGGTGTTAACCATATGTCCGA-TTGAAATGAGAAA-A
1 ATTTGAC-CAGGGTGGTAACCATACGTCAAACAAG-AATGA-AAAGA
* * * * * *
143691 GTTTGACCAGGGTGGTAACCATACATCAAATAGGAAGGAAGCAG-
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAA-AAGA
* * * *
143735 ATTTGACCAGGGTGGTAATCATATGTCAAATCAA-AATGAGAGGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAA-CAAGAATGAAAAGA
* * * * * *
143779 GTTTGACCAGGGCGGTAACAATACATCAAACATGAATAAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * *
143823 ACTTGACCAGGGTGGTAACCATACGTCAAGCAAG-ATAAAAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
* * * * *
143866 ATCTGACTAGGGTGGTAACCATATGTCAGAC-CGAAAT-AAGAAGA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAG-AATGAA-AAGA
* * *
143910 GTTTGACCAGGGTGGTAACCATACATCAAACAAGAATGAAAAAA
1 ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
*
143954 ACTTGACCA
1 ATTTGACCA
143963 AGGTTGTAGA
Statistics
Matches: 718, Mismatches: 224, Indels: 62
0.72 0.22 0.06
Matches are distributed among these distances:
42 1 0.00
43 152 0.21
44 543 0.76
45 22 0.03
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (44 bp):
ATTTGACCAGGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
Found at i:144961 original size:79 final size:79
Alignment explanation
Indices: 144794--145365 Score: 600
Period size: 79 Copynumber: 7.3 Consensus size: 79
144784 TGGGAGATAC
* * * *
144794 TCCAAAATATTAAATTTTTCATCTCGGGGATACTCCAA--CCATCAATTT-TGAAGGGATACTCC
1 TCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAACCCCAT-TATTTCTGAGGGGATACTCC
144856 AACCCCATTTTTATT
65 AACCCCATTTTTATT
* ** * *
144871 TCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAAACCTGTTATTTCTGAGGGGACACTTCA
1 TCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAACCCCATTATTTCTGAGGGGATACTCCA
144936 ACCCCATTTTTATT
66 ACCCCATTTTTATT
* * * * *
144950 TTCAAAATATTAAAATTCTCATATTGGGGATACTCTAACCCCATCAATTTC-GAGGGGATACTCC
1 TCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAACCCCAT-TATTTCTGAGGGGATACTCC
145014 AACCCCATTTTTATT
65 AACCCCATTTTTATT
* * * * * * * * *
145029 TTCAAAATATTAAACTTTTCATGTTGGGAATACTCCAACCCTATTATTTTTTA-TGGATATTCCA
1 TCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAACCCCATTATTTCTGAGGGGATACTCCA
** *
145093 ACCCTGTTTTTGTT
66 ACCCCATTTTTATT
* * **
145107 TCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCCATTAATTCCAAGGGGATACTCCA
1 TCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAACCCCATTATTTCTGAGGGGATACTCCA
* *
145172 ACCTCACTTTTATT
66 ACCCCATTTTTATT
** * * * * * *
145186 TCCAAAATATTAATTTTTTTCATCTTAGGGATACTCTAACCCCGTTGTTT-TCGA-TGGATATTC
1 TCCAAAATATTAA-AATTTTCATCTTGGGGATACTCCAACCCCATTATTTCT-GAGGGGATACTC
*
145249 CAACCCCGTTTTTATT
64 CAACCCCATTTTTATT
* * * **
145265 TCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCATCAATTCCAAGGGGATACTCCA
1 TCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAACCCCATTATTTCTGAGGGGATACTCCA
* *
145330 ACCCCACTCTTATT
66 ACCCCATTTTTATT
** *
145344 TCCAAAATGCTAAATTTTTCAT
1 TCCAAAATATTAAAATTTTCAT
145366 TTCTGGATAC
Statistics
Matches: 405, Mismatches: 80, Indels: 18
0.81 0.16 0.04
Matches are distributed among these distances:
77 36 0.09
78 101 0.25
79 234 0.58
80 34 0.08
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.37
Consensus pattern (79 bp):
TCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAACCCCATTATTTCTGAGGGGATACTCCA
ACCCCATTTTTATT
Found at i:145253 original size:236 final size:236
Alignment explanation
Indices: 144794--145365 Score: 684
Period size: 236 Copynumber: 2.4 Consensus size: 236
144784 TGGGAGATAC
*
144794 TCCAAAATATTAAATTTTTCATCTCGGGGATACTCCAA-CCATCAATTTTGAAGGGATACTCCAA
1 TCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCATCAATTTTGAAGGGATACTCCAA
* ** * **
144858 CCCCATTTTTATTTCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAAACCTGTTATTTCTG
66 CCCCATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAAACCCATTAATTCCA
* * * *
144923 AGGGGACACTTCAACCCCATTTTTATTTTCAAAATATTAAAATTCTCATATTGGGGATACTCTAA
131 AGGGGACACTCCAACCCCACTTTTATTTCCAAAATATTAAAATTCTCATATTAGGGATACTCTAA
144988 CCCCATCAATTTCGAGGGGATACTCCAACCCCATTTTTATT
196 CCCCATCAATTTCGAGGGGATACTCCAACCCCATTTTTATT
* * * * * ** * *
145029 TTCAAAATATTAAACTTTTCATGTTGGGAATACTCCAACCCTAT-TATTTTTTATGGATATTCCA
1 TCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCC-ATCAATTTTGAAGGGATACTCCA
** * *
145093 ACCCTGTTTTTGTTTCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCCATTAATTCC
65 ACCCCATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAAACCCATTAATTCC
* * ** * *
145158 AAGGGGATACTCCAACCTCACTTTTATTTCCAAAATATTAATTTTTTTCATCTTAGGGATACTCT
130 AAGGGGACACTCCAACCCCACTTTTATTTCCAAAATATTAA-AATTCTCATATTAGGGATACTCT
* *** * * *
145223 AACCCCGTTGTTTTCGA-TGGATATTCCAACCCCGTTTTTATT
194 AACCCCATCAATTTCGAGGGGATACTCCAACCCCATTTTTATT
**
145265 TCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCATCAA-TTCCAAGGGGATACTCC
1 TCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAA-CCCATCAATTTTGAA-GGGATACTCC
* * ** *
145329 AACCCCACTCTTATTTCCAAAATGCTAAATTTTTCAT
64 AACCCCATTTTTATTTCCAAAATATTAAAATTTTCAT
145366 TTCTGGATAC
Statistics
Matches: 276, Mismatches: 55, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
235 33 0.12
236 169 0.61
237 74 0.27
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.37
Consensus pattern (236 bp):
TCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCATCAATTTTGAAGGGATACTCCAA
CCCCATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAAACCCATTAATTCCA
AGGGGACACTCCAACCCCACTTTTATTTCCAAAATATTAAAATTCTCATATTAGGGATACTCTAA
CCCCATCAATTTCGAGGGGATACTCCAACCCCATTTTTATT
Found at i:145284 original size:158 final size:155
Alignment explanation
Indices: 144794--145365 Score: 693
Period size: 158 Copynumber: 3.7 Consensus size: 155
144784 TGGGAGATAC
* **
144794 TCCAAAATATTAAATTTTTCATCTCGGGGATACTCCAA--CCATCAATTTTGAA-GGGATACTCC
1 TCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCCATCAA-TTCCAAGGGGATACTCC
* * *
144856 AACCCCATTTTTATTTCCAAAATATTAAAATTTTCATCTTGGGGATACTCCAAACCTGTTATTTC
65 AACCCCACTTTTATTTCCAAAATATTAAAATTTTCATCTT-GGGATACTCCAACCCTGTTTTTTC
* * *
144921 TGAGGGGACACTT-CAACCCCATTTTTATT
129 -GA-TGGATA-TTCCAACCCCGTTTTTATT
* * * * * * *
144950 TTCAAAATATTAAAATTCTCATATTGGGGATACTCTAACCCCATCAATTTCGAGGGGATACTCCA
1 TCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCCATCAATTCCAAGGGGATACTCCA
* * * * * *
145015 ACCCCATTTTTATTTTCAAAATATTAAACTTTTCATGTTGGGAATACTCCAACCCTATTATTTTT
66 ACCCCACTTTTATTTCCAAAATATTAAAATTTTCATCTTGGG-ATACTCCAACCCTGTT-TTTTC
* * *
145080 TATGGATATTCCAACCCTGTTTTTGTT
129 GATGGATATTCCAACCCCGTTTTTATT
*
145107 TCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCCATTAATTCCAAGGGGATACTCCA
1 TCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCCATCAATTCCAAGGGGATACTCCA
* ** * *
145172 ACCTCACTTTTATTTCCAAAATATTAATTTTTTTCATCTTAGGGATACTCTAACCCCGTTGTTTT
66 ACCCCACTTTTATTTCCAAAATATTAA-AATTTTCATCTT-GGGATACTCCAACCCTGTT-TTTT
145237 CGATGGATATTCCAACCCCGTTTTTATT
128 CGATGGATATTCCAACCCCGTTTTTATT
* *
145265 TCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCATCAATTCCAAGGGGATACTCCA
1 TCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCCATCAATTCCAAGGGGATACTCCA
* ** *
145330 ACCCCACTCTTATTTCCAAAATGCTAAATTTTTCAT
66 ACCCCACTTTTATTTCCAAAATATTAAAATTTTCAT
145366 TTCTGGATAC
Statistics
Matches: 357, Mismatches: 51, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
156 34 0.10
157 113 0.32
158 204 0.57
159 6 0.02
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.37
Consensus pattern (155 bp):
TCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAACCCCATCAATTCCAAGGGGATACTCCA
ACCCCACTTTTATTTCCAAAATATTAAAATTTTCATCTTGGGATACTCCAACCCTGTTTTTTCGA
TGGATATTCCAACCCCGTTTTTATT
Found at i:145536 original size:21 final size:21
Alignment explanation
Indices: 145496--145534 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
145486 AAATCATGGA
145496 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
145517 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
145535 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:145907 original size:20 final size:20
Alignment explanation
Indices: 145882--145919 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
145872 GTCGTGTCGT
*
145882 AAGAAATAAATATAAGAAAA
1 AAGAAATAAATAAAAGAAAA
145902 AAGAAATAAATAAAAGAA
1 AAGAAATAAATAAAAGAA
145920 TCGAATCCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (20 bp):
AAGAAATAAATAAAAGAAAA
Found at i:147553 original size:60 final size:61
Alignment explanation
Indices: 147387--147605 Score: 184
Period size: 60 Copynumber: 3.6 Consensus size: 61
147377 GACCAAAGAC
* * *
147387 AGTCAA-AAGGGATAAGATTTGATCAAGTATAG-GTAAATGAGGA-AATACTTGACTGAATAA
1 AGTCAAGAAGGGCTGAGATTTGATCAAGTATAGTG-AAATGAGGATAGT-CTTGACTGAATAA
** * * * * *
147447 AGTCAAGTGGGGCTG-GAATTTGATCGAA-TACAGTCAAATAAAGATAGTCTTAACTGAATACA
1 AGTCAAGAAGGGCTGAG-ATTTGATC-AAGTATAGTGAAATGAGGATAGTCTTGACTGAATA-A
* *
147509 A-TGAAGAAGGG-TGAGATTTGATCAAGTATAGTGAAATGAGGATAGTCTTGACTGAATAT
1 AGTCAAGAAGGGCTGAGATTTGATCAAGTATAGTGAAATGAGGATAGTCTTGACTGAATAA
* * * * *
147568 AGTCAA-AAGGGGTAAGATTTGATCGAGTACAGTCAAAT
1 AGTCAAGAAGGGCTGAGATTTGATCAAGTATAGTGAAAT
147606 AATGATGGAA
Statistics
Matches: 125, Mismatches: 24, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
59 8 0.06
60 69 0.55
61 42 0.34
62 6 0.05
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.26
Consensus pattern (61 bp):
AGTCAAGAAGGGCTGAGATTTGATCAAGTATAGTGAAATGAGGATAGTCTTGACTGAATAA
Found at i:147634 original size:35 final size:35
Alignment explanation
Indices: 147595--148270 Score: 326
Period size: 35 Copynumber: 19.9 Consensus size: 35
147585 TTTGATCGAG
*
147595 TACAGTCAAATAATGATGGAAAGAGTTTGACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * * *
147630 TACAGCCAAAAGATGATGGAAAGCGTTTGACTAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * * *
147665 TATAGTCTAACGATGATGGTAAGAGTTTGACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * *
147700 TACAATCAACTAATGATGGAAAGAGTTTGACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
*
147735 TACAATCAAATGATGATGGAAAGAGTTTGACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * * *
147770 TACAGTAAAACGATGATGGAAAGAGTTTGCCCAAA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* ** *
147805 TACAGTCAAATGATGATGGAAAGAGCTTAAGAGAAAA
1 TACAGTCAAATGATGATGGAAAGAG-TT-TGACCAGA
* * *
147842 TTTGATCGAGT-ATAGTCCAATGAT-GAAAGA-CTTGACC-GAA
1 --T-A-C-AGTCA-AAT--GATGATGGAAAGAGTTTGACCAG-A
* * ** * *
147882 TATAGTCAAACGGGGGT-G-AA-A-TTT-ACCAAA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * *
147912 TATAGTCAAAT-A--A-GG--ATAGTCTTGA-CTGAA
1 TACAGTCAAATGATGATGGAAAGAGT-TTGACCAG-A
* **
147942 TACAGTC-AA-GA--AGGGTGAGA-TTTGACC-GA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * *
147971 GTATAGTC-AA--ATGA-GG--ATAGTCTTGA-CTGAA
1 -TACAGTCAAATGATGATGGAAAGAGT-TTGACCAG-A
* * * * *
148002 TATACTC-TA-GA-G-GGGTAAGA-TTTGACCGAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACC-AGA
*
148033 T--AGTCAAATGATGATGGAAAAAGTTTGACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * * *
148066 TATAGTTAAACGATGATAGAAAGAGTTTGACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * * *
148101 TATAGTTAAACGATGATGGAAAGAGTTTAACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * *
148136 TACAATCTAACGATGATGGAAAGAGTTTGACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* * * * ** *
148171 TATAGTCCAACGATGATGGAAAGCGTTTTTCTAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* ** *
148206 TATAGTCAAACAATAATGGAAAGAGTTTGACCAGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
* *
148241 TACAGTCAAATGATGATGCAAAGAGCTTGA
1 TACAGTCAAATGATGATGGAAAGAGTTTGA
148271 GAGAAAATTT
Statistics
Matches: 500, Mismatches: 97, Indels: 88
0.73 0.14 0.13
Matches are distributed among these distances:
26 1 0.00
27 2 0.00
28 3 0.01
29 14 0.03
30 59 0.12
31 14 0.03
32 8 0.02
33 12 0.02
34 7 0.01
35 347 0.69
36 3 0.01
37 5 0.01
38 1 0.00
39 1 0.00
40 4 0.01
41 3 0.01
42 5 0.01
43 6 0.01
44 5 0.01
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (35 bp):
TACAGTCAAATGATGATGGAAAGAGTTTGACCAGA
Found at i:147937 original size:60 final size:60
Alignment explanation
Indices: 147872--148041 Score: 177
Period size: 60 Copynumber: 2.9 Consensus size: 60
147862 TGATGAAAGA
* *
147872 CTTGACCGAATATAGTCAA-ACGGGGGTGAAATTT-ACCAAATATAGTCAAATAAGGATAGT
1 CTTGACTGAATATAGTCAAGA--AGGGTGAAATTTGACCAAATATAGTCAAATAAGGATAGT
* * * * *
147932 CTTGACTGAATACAGTCAAGAAGGGTGAGATTTGACCGAGTATAGTCAAATGAGGATAGT
1 CTTGACTGAATATAGTCAAGAAGGGTGAAATTTGACCAAATATAGTCAAATAAGGATAGT
* * * * *
147992 CTTGACTGAATATACTCTAGAGGGGT-AAGATTTGACC-GAGATAGTCAAAT
1 CTTGACTGAATATAGTCAAGAAGGGTGAA-ATTTGACCAAATATAGTCAAAT
148042 GATGATGGAA
Statistics
Matches: 92, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
59 21 0.23
60 70 0.76
61 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (60 bp):
CTTGACTGAATATAGTCAAGAAGGGTGAAATTTGACCAAATATAGTCAAATAAGGATAGT
Found at i:147949 original size:30 final size:30
Alignment explanation
Indices: 147910--148005 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
147900 AAATTTACCA
147910 AATATAGTCAAATAAGGATAGTCTTGACTG
1 AATATAGTCAAATAAGGATAGTCTTGACTG
* * * *
147940 AATACAGTC-AAGAAGGGTGAGAT-TTGACCG
1 AATATAGTCAAATAAGGAT-AG-TCTTGACTG
* *
147970 AGTATAGTCAAATGAGGATAGTCTTGACTG
1 AATATAGTCAAATAAGGATAGTCTTGACTG
148000 AATATA
1 AATATA
148006 CTCTAGAGGG
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
29 8 0.16
30 36 0.71
31 7 0.14
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (30 bp):
AATATAGTCAAATAAGGATAGTCTTGACTG
Found at i:148292 original size:436 final size:438
Alignment explanation
Indices: 147403--148326 Score: 1291
Period size: 436 Copynumber: 2.1 Consensus size: 438
147393 AAGGGATAAG
* * * * * ** *
147403 ATTTGATCAAGTATAGGT-AAATGAGGAAATACTTGACTGAATAAAGTCAAGTGGGGCTGGAATT
1 ATTTGATCAAGTATA-GTCCAATGATGAAAGACTTGACCGAATATAGTCAAACGGGGCTGAAATT
* * * *
147467 TGATCGAATACAGTCAAATAAAGATAGTCTTAACTGAATACAATGAAGAAGGGTGAGATTTGATC
65 TGACCAAATACAGTCAAATAAAGATAGTCTTAACTGAATACAATCAAGAAGGGTGAGATTTGACC
* * *
147532 AAGTATAGTGAAATGAGGATAGTCTTGACTGAATATAGTCAAAAGGGGTAAGATTTGATCGAGTA
130 AAGTATAGTCAAATGAGGATAGTCTTGACTGAATATACTCAAAAGGGGTAAGATTTGACCGAGTA
* * * *
147597 CAGTCAAATAATGATGGAAAGAGTTTGACCAGATACAGCCAAAAGATGATGGAAAGCGTTTGACT
195 CAGTCAAATAATGATGGAAAAAGTTTGACCAGATACAGCCAAAAGATGATAGAAAGAGTTTGACC
* *
147662 AGATATAGTCTAACGATGATGGTAAGAGTTTGACCAGATACAATCAACTAATGATGGAAAGAGTT
260 AGATATAGTCTAACGATGATGGAAAGAGTTTAACCAGATACAATCAACTAATGATGGAAAGAGTT
* * *
147727 TGACCAGATACAATCAAATGATGATGGAAAGAGTTTGACCAGATACAGTAAAACGATGATGGAAA
325 TGACCAGATACAATCAAACGATGATGGAAAGAGTTTGACCAGATACAGTAAAACAATAATGGAAA
* *
147792 GAGTTTGCCCAAATACAGTCAAATGATGATGGAAAGAGCTTAAGAGAAA
390 GAGTTTGACCAAATACAGTCAAATGATGATGCAAAGAGCTTAAGAGAAA
* *
147841 ATTTGATCGAGTATAGTCCAATGATGAAAGACTTGACCGAATATAGTCAAACGGGGGTGAAATTT
1 ATTTGATCAAGTATAGTCCAATGATGAAAGACTTGACCGAATATAGTCAAACGGGGCTGAAATTT
* * * * *
147906 -ACCAAATATAGTCAAATAAGGATAGTCTTGACTGAATACAGTCAAGAAGGGTGAGATTTGACCG
66 GACCAAATACAGTCAAATAAAGATAGTCTTAACTGAATACAATCAAGAAGGGTGAGATTTGACCA
* * *
147970 AGTATAGTCAAATGAGGATAGTCTTGACTGAATATACTCTAGAGGGGTAAGATTTGACCGAG-AT
131 AGTATAGTCAAATGAGGATAGTCTTGACTGAATATACTCAAAAGGGGTAAGATTTGACCGAGTAC
* * ** *
148034 AGTCAAATGATGATGGAAAAAGTTTGACCAGATATAGTTAAACGATGATAGAAAGAGTTTGACCA
196 AGTCAAATAATGATGGAAAAAGTTTGACCAGATACAGCCAAAAGATGATAGAAAGAGTTTGACCA
*
148099 GATATAGT-TAAACGATGATGGAAAGAGTTTAACCAGATACAATCTAAC-GATGATGGAAAGAGT
261 GATATAGTCT-AACGATGATGGAAAGAGTTTAACCAGATACAATC-AACTAATGATGGAAAGAGT
* * * * ** * * *
148162 TTGACCAGATATAGTCCAACGATGATGGAAAGCGTTTTTCTAGATATAGTCAAACAATAATGGAA
324 TTGACCAGATACAATCAAACGATGATGGAAAGAGTTTGACCAGATACAGTAAAACAATAATGGAA
* *
148227 AGAGTTTGACCAGATACAGTCAAATGATGATGCAAAGAGCTTGAGAGAAA
389 AGAGTTTGACCAAATACAGTCAAATGATGATGCAAAGAGCTTAAGAGAAA
* *
148277 ATTTGATCAAGTATAGTCCAATGATGAAAGACTTGACCAAAAATAGTCAA
1 ATTTGATCAAGTATAGTCCAATGATGAAAGACTTGACCGAATATAGTCAA
148327 GTGAGGGAAG
Statistics
Matches: 427, Mismatches: 56, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
435 1 0.00
436 257 0.60
437 117 0.27
438 52 0.12
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (438 bp):
ATTTGATCAAGTATAGTCCAATGATGAAAGACTTGACCGAATATAGTCAAACGGGGCTGAAATTT
GACCAAATACAGTCAAATAAAGATAGTCTTAACTGAATACAATCAAGAAGGGTGAGATTTGACCA
AGTATAGTCAAATGAGGATAGTCTTGACTGAATATACTCAAAAGGGGTAAGATTTGACCGAGTAC
AGTCAAATAATGATGGAAAAAGTTTGACCAGATACAGCCAAAAGATGATAGAAAGAGTTTGACCA
GATATAGTCTAACGATGATGGAAAGAGTTTAACCAGATACAATCAACTAATGATGGAAAGAGTTT
GACCAGATACAATCAAACGATGATGGAAAGAGTTTGACCAGATACAGTAAAACAATAATGGAAAG
AGTTTGACCAAATACAGTCAAATGATGATGCAAAGAGCTTAAGAGAAA
Found at i:148323 original size:30 final size:30
Alignment explanation
Indices: 148289--148346 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
148279 TTGATCAAGT
* *
148289 ATAGTCCAA-TGATGAAAGACTTGACCAAAA
1 ATAGT-CAAGTGAGGAAAGACTTAACCAAAA
*
148319 ATAGTCAAGTGAGGGAAGACTTAACCAA
1 ATAGTCAAGTGAGGAAAGACTTAACCAA
148347 GCCAGCCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.19
Consensus pattern (30 bp):
ATAGTCAAGTGAGGAAAGACTTAACCAAAA
Found at i:148934 original size:23 final size:23
Alignment explanation
Indices: 148903--148948 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
148893 TAAGAACCTT
*
148903 TCAATTTCTCCAAGA-ATTATACC
1 TCAAATTCT-CAAGAGATTATACC
*
148926 TCAAATTCTTAAGAGATTATACC
1 TCAAATTCTCAAGAGATTATACC
148949 CTAAGGTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.35
Consensus pattern (23 bp):
TCAAATTCTCAAGAGATTATACC
Found at i:149380 original size:20 final size:20
Alignment explanation
Indices: 149355--149402 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
149345 TCAATGCATC
*
149355 GATACATTTCACCATGTATT
1 GATACAATTCACCATGTATT
**
149375 GATACAATTCGTCATGTATT
1 GATACAATTCACCATGTATT
*
149395 AATACAAT
1 GATACAAT
149403 GTATCGATAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (20 bp):
GATACAATTCACCATGTATT
Found at i:156825 original size:51 final size:50
Alignment explanation
Indices: 156760--156944 Score: 208
Period size: 51 Copynumber: 3.6 Consensus size: 50
156750 TAAGTTTCTC
* * * *
156760 AATTTTTCATAATCGGGGGTACTCCAACCCCGATTTTATTTCTAAAGTACT
1 AATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAA-AACT
* * * *
156811 AATTTTCCAAAATCGGGGATACTCCAACCCCGGTTTTATTTTCCAAACACC
1 AATTTTCCATAATCGGGGATACTCCAACCCCGATTTTA-TTTCCAAAAACT
* **
156862 AATTTTCTATAATCGGGGATACTCCAACTTCGATTTTATTTCCAAAAACATT
1 AATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAAC--T
* * *
156914 AATTTTTCACAATCAGGGATACTCCAACCCC
1 AATTTTCCATAATCGGGGATACTCCAACCCC
156945 ATTAATCATC
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
50 10 0.09
51 69 0.62
52 32 0.29
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (50 bp):
AATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACT
Found at i:156960 original size:27 final size:28
Alignment explanation
Indices: 156929--156998 Score: 90
Period size: 27 Copynumber: 2.5 Consensus size: 28
156919 TTCACAATCA
*
156929 GGGATACTCCAACCCCATTA-AT-CATCG
1 GGGATACTCCAACCCCATTATATCCA-AG
* *
156956 GGGATACTCCAACCCCGTTATTTCCAAG
1 GGGATACTCCAACCCCATTATATCCAAG
156984 GGGATACTCCAACCC
1 GGGATACTCCAACCC
156999 TGACTTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.50
28 17 0.45
29 2 0.05
ACGTcount: A:0.27, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
GGGATACTCCAACCCCATTATATCCAAG
Found at i:157041 original size:107 final size:108
Alignment explanation
Indices: 156876--157078 Score: 250
Period size: 107 Copynumber: 1.9 Consensus size: 108
156866 TTCTATAATC
* * *
156876 GGGGATACTCCAACTTCGATTTTATTTCCAAAAACATTAATTTTTCACAATCAGGGATACTCCAA
1 GGGGATACTCCAACCTCGACTTTATTTCCAAAAACATTAATTTCTCACAATCAGGGATACTCCAA
**
156941 CCCCATTA-ATCATCGGGGATACTCCAACCCCGTTATTTCCAA
66 CCCCATTATATCAGAGGGGATACTCCAACCCCGTTATTTCCAA
* * * * *
156983 GGGGATACTCCAACC-CTGACTTTA-TTCCTAAAATATTGATTTCTCATAATCGGGGGATACTCC
1 GGGGATACTCCAACCTC-GACTTTATTTCCAAAAACATTAATTTCTCACAATC-AGGGATACTCC
* * *
157046 AACCCCGTTATTTCCGAGGGGATACTCCAACCC
64 AACCCCATTATATCAGAGGGGATACTCCAACCC
157079 TGGCTTTATT
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
106 23 0.29
107 39 0.49
108 18 0.22
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (108 bp):
GGGGATACTCCAACCTCGACTTTATTTCCAAAAACATTAATTTCTCACAATCAGGGATACTCCAA
CCCCATTATATCAGAGGGGATACTCCAACCCCGTTATTTCCAA
Found at i:157047 original size:80 final size:79
Alignment explanation
Indices: 156952--157248 Score: 477
Period size: 79 Copynumber: 3.7 Consensus size: 79
156942 CCCATTAATC
* * *
156952 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCTGACTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGACTTTATTTCTAAAGT
*
157017 ATTGATTTCTCATA
66 ATTGATTTCTCACA
*
157031 ATCGGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGGCTTTATTTCTAAAG
1 ATC-GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGACTTTATTTCTAAAG
*
157096 TATTGATTTCCCACA
65 TATTGATTTCTCACA
* * * *
157111 ATCGGGAATACTCCAACCCTGTTATTTCCGAGGGGACACTCCAACCCTGGCTTTATTTCTAAAGT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGACTTTATTTCTAAAGT
157176 ATTGATTTCTCACA
66 ATTGATTTCTCACA
* *
157190 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGACTTTATTTC
157249 CACAACATCG
Statistics
Matches: 201, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
79 128 0.64
80 73 0.36
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGACTTTATTTCTAAAGT
ATTGATTTCTCACA
Found at i:157265 original size:159 final size:159
Alignment explanation
Indices: 156952--157271 Score: 473
Period size: 159 Copynumber: 2.0 Consensus size: 159
156942 CCCATTAATC
* *
156952 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCTGACTTTATTCCTAAAAT
1 ATCGGGAATACTCCAACCCCGTTATTTCCAAGGGGACACTCCAACCCTGACTTTATTCCTAAAAT
* * *
157017 ATTGATTTCTCATAATCGGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGG
66 ATTGATTTCTCACAATCGGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGA
* * *
157082 CTTTATTTCTAAAGTATTGATTTCCCACA
131 CTTTATTTCCAAAGCATCGATTTCCCACA
* * * * *
157111 ATCGGGAATACTCCAACCCTGTTATTTCCGAGGGGACACTCCAACCCTGGCTTTATTTCTAAAGT
1 ATCGGGAATACTCCAACCCCGTTATTTCCAAGGGGACACTCCAACCCTGACTTTATTCCTAAAAT
157176 ATTGATTTCTCACAATC-GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGA
66 ATTGATTTCTCACAATCGGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGA
* * *
157240 TTTTATTTCCACAA-CATCGATTTTCCATA
131 CTTTATTTCCA-AAGCATCGATTTCCCACA
157269 ATC
1 ATC
157272 AGGGGTACTC
Statistics
Matches: 144, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
158 68 0.47
159 76 0.53
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.31
Consensus pattern (159 bp):
ATCGGGAATACTCCAACCCCGTTATTTCCAAGGGGACACTCCAACCCTGACTTTATTCCTAAAAT
ATTGATTTCTCACAATCGGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGA
CTTTATTTCCAAAGCATCGATTTCCCACA
Found at i:169669 original size:9 final size:9
Alignment explanation
Indices: 169652--169739 Score: 79
Period size: 9 Copynumber: 9.3 Consensus size: 9
169642 CTTTTCTAAA
169652 AAAAAAAAC
1 AAAAAAAAC
*
169661 AACAAAAAC
1 AAAAAAAAC
*
169670 AAAAGCAAAAA
1 AAAA--AAAAC
*
169681 AACAAAAAAA
1 AA-AAAAAAC
169691 AAAAAAAAC
1 AAAAAAAAC
*
169700 AAAAAAAAA
1 AAAAAAAAC
169709 AAAAAAAAC
1 AAAAAAAAC
169718 AAAGAAAAA-
1 AAA-AAAAAC
*
169727 AGAGAAAAAC
1 A-AAAAAAAC
169737 AAA
1 AAA
169740 GAATCTGCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
9 43 0.66
10 14 0.22
11 6 0.09
12 2 0.03
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:169673 original size:14 final size:12
Alignment explanation
Indices: 169649--169739 Score: 89
Period size: 12 Copynumber: 7.2 Consensus size: 12
169639 CTTCTTTTCT
169649 AAAAAAAAAAAC
1 AAAAAAAAAAAC
169661 AACAAAAACAAAAGC
1 AA-AAAAA-AAAA-C
169676 AAAAAAACAAAA-
1 AAAAAAA-AAAAC
169688 AAAAAAAAAAAC
1 AAAAAAAAAAAC
169700 AAAAAAAAAAA-
1 AAAAAAAAAAAC
169711 AAAAAACAAAGAA-
1 AAAAAA-AAA-AAC
*
169724 AAAAGAGAAAAAC
1 AAAA-AAAAAAAC
169737 AAA
1 AAA
169740 GAATCTGCTT
Statistics
Matches: 70, Mismatches: 1, Indels: 15
0.81 0.01 0.17
Matches are distributed among these distances:
11 10 0.14
12 25 0.36
13 17 0.24
14 15 0.21
15 3 0.04
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:169693 original size:34 final size:33
Alignment explanation
Indices: 169649--169727 Score: 104
Period size: 36 Copynumber: 2.3 Consensus size: 33
169639 CTTCTTTTCT
* *
169649 AAAAAAAAAAACAACAAAAACAAAAGCAAAAAAAC
1 AAAAAAAAAAAAAACAAAAA-AAAA-AAAAAAAAC
169684 AAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAC
1 -AAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAC
*
169718 AAAGAAAAAA
1 AAAAAAAAAA
169728 GAGAAAAACA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
33 9 0.22
34 8 0.20
35 4 0.10
36 19 0.47
ACGTcount: A:0.89, C:0.09, G:0.03, T:0.00
Consensus pattern (33 bp):
AAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAC
Found at i:169735 original size:1 final size:1
Alignment explanation
Indices: 169649--169727 Score: 77
Period size: 1 Copynumber: 79.0 Consensus size: 1
169639 CTTCTTTTCT
* * * ** * *
169649 AAAAAAAAAAACAACAAAAACAAAAGCAAAAAAACAAAAAAAAAAAAAAACAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
169714 AAACAAAGAAAAAA
1 AAAAAAAAAAAAAA
169728 GAGAAAAACA
Statistics
Matches: 61, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.89, C:0.09, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:169735 original size:30 final size:27
Alignment explanation
Indices: 169650--169727 Score: 93
Period size: 30 Copynumber: 2.7 Consensus size: 27
169640 TTCTTTTCTA
* *
169650 AAAAAAAAAACAACAAAAACAAAAGCAAA
1 AAAAAAAAAAAAAAAAAAACAAAA--AAA
169679 AAAACAAAAAAAAAAAAAAACAAAAAAA
1 AAAA-AAAAAAAAAAAAAAACAAAAAAA
169707 AAAAAAAAAACAAAGAAAAAA
1 AAAAAAAAAA-AAA-AAAAAA
169728 GAGAAAAACA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
27 6 0.14
28 10 0.23
29 10 0.23
30 18 0.41
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAAAAAAAAAAACAAAAAAA
Found at i:169742 original size:19 final size:16
Alignment explanation
Indices: 169649--169739 Score: 92
Period size: 18 Copynumber: 5.1 Consensus size: 16
169639 CTTCTTTTCT
*
169649 AAAAAAAAAAACAACAA
1 AAAAAAAAAAAAAAC-A
169666 AAACAAAAGCAAAAAAACA
1 AAA-AAAA--AAAAAAACA
169685 AAAAAAAAAAAAAACAAA
1 AAAAAAAAAAAAAAC--A
169703 AAAAAAAAAAAAAACA
1 AAAAAAAAAAAAAACA
169719 AAGAAAAAAGAGAAAAACA
1 AA-AAAAAA-A-AAAAACA
169738 AA
1 AA
169740 GAATCTGCTT
Statistics
Matches: 65, Mismatches: 1, Indels: 14
0.81 0.01 0.17
Matches are distributed among these distances:
16 11 0.17
17 9 0.14
18 25 0.38
19 13 0.20
20 7 0.11
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAACA
Found at i:170787 original size:55 final size:55
Alignment explanation
Indices: 170701--171121 Score: 529
Period size: 55 Copynumber: 7.3 Consensus size: 55
170691 TTTCACCTTT
* * *
170701 CAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTCGGTGGCATTTTC
1 CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
*
170756 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
1 CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
*
170811 CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTC
1 CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
* * *
170866 CAGTCCTCAAAGAGCAGGATGGCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
1 CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
*
170921 CAGTCCTCAAAGAGCAGGACACTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
1 CAGTCCTCAAAGAGCAGGACGC-----CTTTT-AAAGCCCACACAAGTTGGTGGCATTTTC
* *
170982 CAATCCTCAAAGAGCAGGACGCATTTTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
1 CAGTCCTCAAAGAGCAGGACGC-----CTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
* * * * *
171042 CAATCCTTAAAGAGTAGGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTC
1 CAGTCCTCAAAGAGCAGG--A----CGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
171102 CTAGTCCTCAAAGAGCAGGA
1 C-AGTCCTCAAAGAGCAGGA
171122 TGCTCTCTCC
Statistics
Matches: 327, Mismatches: 26, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
55 174 0.53
59 1 0.00
60 52 0.16
61 97 0.30
62 1 0.00
66 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (55 bp):
CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:170809 original size:27 final size:27
Alignment explanation
Indices: 170779--170919 Score: 77
Period size: 27 Copynumber: 5.1 Consensus size: 27
170769 GCAGGACGCC
170779 TTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTAAAGCCCACACAAGTTGGTGGCA
** * * * ** ** *
170806 TTTTCCAGTCCTCAAAGAGCAGGACGCC
1 TTTTAAAGCCCACACA-AGTTGGTGGCA
*
170834 TTTTAAAGCCCACACAAGTTAGTGGCA
1 TTTTAAAGCCCACACAAGTTGGTGGCA
** * * * **
170861 TTTTCCAGTCCTCAAAGAGCAGGATGGC-
1 TTTTAAAGCCCACACA-AGTTGG-TGGCA
*
170889 TTTCAAAGCCCACACAAGTTGGTGGCA
1 TTTTAAAGCCCACACAAGTTGGTGGCA
170916 TTTT
1 TTTT
170920 CCAGTCCTCA
Statistics
Matches: 72, Mismatches: 38, Indels: 8
0.61 0.32 0.07
Matches are distributed among these distances:
26 4 0.06
27 34 0.47
28 30 0.42
29 4 0.06
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (27 bp):
TTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:171337 original size:154 final size:154
Alignment explanation
Indices: 171009--171429 Score: 657
Period size: 154 Copynumber: 2.7 Consensus size: 154
170999 GACGCATTTT
* * ** * *
171009 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTTAAAGAGTAGGACACCTTCTCCTTT
1 CTTTTAAAGCCCACACAAGCTGGTGGCACCTT-CAGTCCTCAAAGAGTAGGACACCTTCTCCTTT
*
171074 TAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCGCC
65 TAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCC
* *
171139 TTTTTTCCCTAAAAGGGGAGGATGC
130 TTTTTTCCCTAAAAGAGCAGGATGC
* * *
171164 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAGGAGAAGGACGCCTTCTCCTTTT
1 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGTAGGACACCTTCTCCTTTT
171229 AAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCT
66 AAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCT
*
171294 TTTTGT-CCTCAAAGAGCAGGATGC
131 TTTT-TCCCTAAAAGAGCAGGATGC
*
171318 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGTAGGACACCTTCTCTTTTT
1 CTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGTAGGACACCTTCTCCTTTT
* *
171383 AAAGCCCACACAAGTTGGGGGCACTT-TTCAGTCCTCAAAGAGCAGGA
66 AAAGCCCACACAAGTTGGTGGCACTTCCT-AGTCCTCAAAGAGCAGGA
171430 TGCTTTCTTT
Statistics
Matches: 245, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
153 1 0.00
154 215 0.88
155 29 0.12
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (154 bp):
CTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGTAGGACACCTTCTCCTTTT
AAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCT
TTTTTCCCTAAAAGAGCAGGATGC
Found at i:171509 original size:122 final size:115
Alignment explanation
Indices: 171298--171551 Score: 346
Period size: 122 Copynumber: 2.1 Consensus size: 115
171288 TCGCCTTTTT
171298 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGA
1 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGA
**
171363 GTAGGACACCTTCTCTTTTTAAAGCCCACACAAGTTGGGGGCACTTTTCA
66 GTAGGACACCTTCTCTTTGGAAAGCCCACACAAGTTGGGGGCACTTTTCA
* *
171413 GTCCTCAAAGAGCAGGATGCTTTCTTTTTGCGAAGCCCACACAAGTTGGTGGCACCTTCCAGTCC
1 GTCCTCAAAGAGCAGGATGC---C-TTTT--AAAGCCCACACAAGCTGGTGGCACCTT-CAGTCC
* * * * * *
171478 TCAAAGGGTAGGACGCTTTTTCTTTGGAAAGCCCACACGAGTTGGTGGCACTTTTCA
59 TCAAAGAGTAGGACACCTTCTCTTTGGAAAGCCCACACAAGTTGGGGGCACTTTTCA
*
171535 GTCCTCAAAGAGTAGGA
1 GTCCTCAAAGAGCAGGA
171552 CACACTTCTT
Statistics
Matches: 121, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
115 20 0.17
118 1 0.01
119 4 0.03
121 25 0.21
122 71 0.59
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (115 bp):
GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGA
GTAGGACACCTTCTCTTTGGAAAGCCCACACAAGTTGGGGGCACTTTTCA
Found at i:171552 original size:61 final size:61
Alignment explanation
Indices: 171323--171552 Score: 295
Period size: 61 Copynumber: 3.8 Consensus size: 61
171313 GATGCCTTTT
* * * * * **
171323 AAAGCCCACACAAGCTGGTGGCAC-CTTCAGTCCTCAAAGAGTAGGACACCTTCTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGCTTTTTCTTTGG
* * *
171383 AAAGCCCACACAAGTTGGGGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTT-TTTGCG
1 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGCTTT-TTCTTTG-G
* * *
171445 -AAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGGGTAGGACGCTTTTTCTTTGG
1 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGCTTTTTCTTTGG
*
171505 AAAGCCCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGAC
1 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGAC
171553 ACACTTCTTT
Statistics
Matches: 145, Mismatches: 20, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
60 25 0.17
61 119 0.82
62 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (61 bp):
AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGCTTTTTCTTTGG
Found at i:171633 original size:42 final size:42
Alignment explanation
Indices: 171535--171669 Score: 148
Period size: 42 Copynumber: 3.1 Consensus size: 42
171525 GCACTTTTCA
* * *
171535 GTCCTCAAAGAGTAGGACACACTTC-TTTCCCTTTTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTCCC---TTTT-TCTTTT
*
171580 GTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTTTTTCTTTT
1 GTCCTCAAAGAGCAGGACGCA-TTTCATTTCCCTTTTTCTTTT
* * *
171622 GTCCTCAAAGAGCAGGACGTATTTCGTTTCCCTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTCCCTTTTTCTTTT
171664 GTCCTC
1 GTCCTC
171670 GAAAAATAGG
Statistics
Matches: 79, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
41 3 0.04
42 46 0.58
43 4 0.05
45 19 0.24
46 7 0.09
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACGCATTTCATTTCCCTTTTTCTTTT
Found at i:172471 original size:20 final size:19
Alignment explanation
Indices: 172417--172523 Score: 102
Period size: 20 Copynumber: 5.7 Consensus size: 19
172407 TTTAGCCAAA
172417 TGTATCGATACATTTTGT-AT
1 TGTATCGATACA--TTGTCAT
172437 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTG-TCAT
172457 TGTATCGAT--A----CAT
1 TGTATCGATACATTGTCAT
172470 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTG-TCAT
* *
172490 TGTATCGATACATTTTACAA
1 TGTATCGATACATTGT-CAT
172510 TGTATCGATACATT
1 TGTATCGATACATT
172524 CAGGCATTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 20
0.77 0.02 0.21
Matches are distributed among these distances:
13 12 0.16
15 1 0.01
18 4 0.05
19 2 0.03
20 56 0.75
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTGTCAT
Found at i:172477 original size:33 final size:33
Alignment explanation
Indices: 172435--172503 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
172425 TACATTTTGT
172435 ATTGTATCGATACATTGCTCATTGTATCGATAC
1 ATTGTATCGATACATTGCTCATTGTATCGATAC
172468 ATTGTATCGATACATTGCTCATTGTATCGATAC
1 ATTGTATCGATACATTGCTCATTGTATCGATAC
172501 ATT
1 ATT
172504 TTACAATGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (33 bp):
ATTGTATCGATACATTGCTCATTGTATCGATAC
Found at i:172483 original size:53 final size:53
Alignment explanation
Indices: 172417--172523 Score: 148
Period size: 53 Copynumber: 2.0 Consensus size: 53
172407 TTTAGCCAAA
*
172417 TGTATCGATACATTTTG-T-ATTGTATCGATACATTGCT-CATTGTATCGATACAT
1 TGTATCGATACA--TTGCTCATTGTATCGATACATT-CTACAATGTATCGATACAT
*
172470 TGTATCGATACATTGCTCATTGTATCGATACATTTTACAATGTATCGATACAT
1 TGTATCGATACATTGCTCATTGTATCGATACATTCTACAATGTATCGATACAT
172523 T
1 T
172524 CAGGCATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
51 3 0.06
52 2 0.04
53 44 0.90
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (53 bp):
TGTATCGATACATTGCTCATTGTATCGATACATTCTACAATGTATCGATACAT
Found at i:172503 original size:13 final size:13
Alignment explanation
Indices: 172454--172484 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
172444 ATACATTGCT
172454 CATTGTATCGATA
1 CATTGTATCGATA
172467 CATTGTATCGATA
1 CATTGTATCGATA
172480 CATTG
1 CATTG
172485 CTCATTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:176836 original size:55 final size:55
Alignment explanation
Indices: 176745--178113 Score: 1379
Period size: 55 Copynumber: 23.9 Consensus size: 55
176735 CGCCTTTTCT
*
176745 TTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC
*
176800 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC
* * * *
176855 TTTTAAAGCCCACATAAGTCGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC
* * * *
176910 TTTCAAAGCCCACACGAGTTGGTGGCA-CTTCTCAGTCCTCAAAGAGCAAGATGCCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTC-CAGTCCTCAAAGAGCAGGACG-CC
*
176966 TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT--AGTCCTTAAAGAGCAGGACACCTTT
1 TTT-C----AAAGCCCACACAAGTTGGTGGCA--TTTTCCAGTCCTCAAAGAGCAGG--A-C---
*
177029 TTCCC
53 --GCC
*
177034 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTT--AGTCCTCAAAGAGCAGGATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCA--TTTTCCAGTCCTCAAAGAGCAGGACGCC
* * *
177089 TTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC
* * *
177144 TTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAAGATGCC
1 -TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC
*
177200 TTTCAAAGCCCACACAAGTTGGTGGTATTTTCCAGTCCTCAAAGAGCAGGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC
* * *
177255 TTTCAAAGCCCACACAAGTTGGTGCCATTTTCCAGTCCTCAAAGAGCTGGATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC
* * * * *
177310 TTTTC-AAGCCCACATAAGTCGGTAGCATTTTCCAGTCCTCAAAAAGTAGGACGCC
1 -TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC
* * *
177365 TTTCAAAGCCCACACGAGTTGGTGGCA-CTTCTCAGTCCTCAAAGAGCAGGATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTC-CAGTCCTCAAAGAGCAGGACGCC
177420 TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT--AGTCCTCAAAGAGCAGGACACCTT
1 -TTT-C----AAAGCCCACACAAGTTGGTGGCA--TTTTCCAGTCCTCAAAGAGCAGG--A-C--
*
177483 TTTCCC
53 ---GCC
* *
177489 TTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGATGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC
* * *
177544 TTTTAAATCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC
* * * *
177599 TTTTAAAGGCCACACGAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGACGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC
* ** * *
177654 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGCCTTTCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA---C--GCC
* ** *
177714 TTTGCAAGGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAAAGCAGGACGCCTTTCCC
1 TTT-CAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG------CC
* * *
177776 TTTCATAGCCCACACAAGTTGGTGGCATTGTCCAGTCCTCAAAGAGCAGGATGCTTTTTC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGC-----C
* * *
177836 TTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCATGATGCTTTTTC
1 -TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGC-----C
* * * * * *
177897 TTTTCAAAACCCACACAAGTTGGTGGCACCTTT-CAATCCCCAAAGAGCAAGACACC
1 -TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC
*
177953 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC
*
178008 TCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCC
1 T-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCC
* *
178063 TTTCAAAGCCCACACGAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCAGGA
1 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGA
178114 TGCACTTTAT
Statistics
Matches: 1139, Mismatches: 108, Indels: 134
0.82 0.08 0.10
Matches are distributed among these distances:
54 28 0.02
55 651 0.57
56 71 0.06
57 2 0.00
58 2 0.00
60 6 0.01
61 264 0.23
62 12 0.01
63 87 0.08
64 4 0.00
67 2 0.00
68 8 0.01
69 2 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (55 bp):
TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC
Found at i:176905 original size:110 final size:110
Alignment explanation
Indices: 176743--178121 Score: 1551
Period size: 110 Copynumber: 12.0 Consensus size: 110
176733 GACGCCTTTT
176743 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
1 CTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
176808 CCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
65 CCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
* * * *
176854 CTTTTAAAGCCCACATAAGTCGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
* * *
176918 CCCACACGAGTTGGTGGCA-CTTCTCAGTCCTCAAAGAGCAAGATGCCCTTTC
65 CCCACACAAGTTGGTGGCATTTTC-CAGTCCTCAAAGAGCAGGATG------C
* * *
176970 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCAGGACACCTTTTTCCCT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--A-C-----GCCT
177035 TTCAAAGCCCACACAAGTTGGTGGCACCTTTT--AGTCCTCAAAGAGCAGGATGC
58 TTCAAAGCCCACACAAGTTGGTGGCA--TTTTCCAGTCCTCAAAGAGCAGGATGC
*
177088 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCAAAG
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCC-TTTCAAAG
* *
177153 CCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAAGATGC
65 CCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGATGC
* * *
177199 CTTTCAAAGCCCACACAAGTTGGTGGTA-TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
* *
177263 CCCACACAAGTTGGTGCCATTTTCCAGTCCTCAAAGAGCTGGATGC
65 CCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
* * * * * * *
177309 CTTTTCAAGCCCACATAAGTCGGTAGCA-TTTTCCAGTCCTCAAAAAGTAGGACGCCTTTCAAAG
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
* *
177373 CCCACACGAGTTGGTGGCA-CTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTC
65 CCCACACAAGTTGGTGGCATTTTC-CAGTCCTCAAAGAGCAGGATG------C
* *
177425 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCCT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--A-C-----GCCT
*
177490 TTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGATGC
58 TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGATGC
* * *
177543 CTTTTAAATCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGG
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
* * *
177608 CCACACGAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGACGC
66 CCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
*
177653 CTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCTAGTCCTCAAAGAGCAGGATGCCTTTCCTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGA---C--GCCTTT
* ** * *
177717 GCAAGGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAAAGCAGGACGC
60 -CAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
* *
177769 CTTTCCCTTTCATAGCCCACACAAGTTGGTGGCA--TTGTCCAGTCCTCAAAGAGCAGGATGCTT
1 C--T---TTT-AAAGCCCACACAAGTTGGTGGCACCTT-T-CAGTCCTCAAAGAGCAGGACGC--
* *
177832 TTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCATGATGC
56 ---C-TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
* * * * *
177891 TTTTTCTTTTCAAAACCCACACAAGTTGGTGGCACCTTTCAATCCCCAAAGAGCAAGACACCTTT
1 -----CTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTT
**
177956 CAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
60 CAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
*
178007 CTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
* *
178072 CCACACGAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCAGGATGC
66 CCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGATGC
178117 ACTTT
1 -CTTT
178122 ATTTTCCTTT
Statistics
Matches: 1090, Mismatches: 104, Indels: 148
0.81 0.08 0.11
Matches are distributed among these distances:
109 18 0.02
110 421 0.39
111 111 0.10
113 1 0.00
115 6 0.01
116 179 0.16
117 8 0.01
118 103 0.09
119 2 0.00
121 4 0.00
122 128 0.12
123 5 0.00
124 98 0.09
125 1 0.00
126 2 0.00
127 3 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (110 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
CCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
Found at i:177313 original size:28 final size:28
Alignment explanation
Indices: 177227--177314 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
177217 GTTGGTGGTA
* *
177227 TTTTCCAGTCCTCAAAGAGCAGGACGCC
1 TTTTCCAGTCCTCAAAGAGCTGGATGCC
* * * * *
177255 -TTTCAAAGCCCACACA-AGTTGG-TGCC
1 TTTTC-CAGTCCTCAAAGAGCTGGATGCC
177281 ATTTTCCAGTCCTCAAAGAGCTGGATGCC
1 -TTTTCCAGTCCTCAAAGAGCTGGATGCC
177310 TTTTC
1 TTTTC
177315 AAGCCCACAT
Statistics
Matches: 43, Mismatches: 12, Indels: 10
0.66 0.18 0.15
Matches are distributed among these distances:
26 3 0.07
27 15 0.35
28 21 0.49
29 4 0.09
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (28 bp):
TTTTCCAGTCCTCAAAGAGCTGGATGCC
Found at i:177602 original size:455 final size:455
Alignment explanation
Indices: 176706--178121 Score: 2007
Period size: 455 Copynumber: 3.1 Consensus size: 455
176696 GCACCTTTTT
* *
176706 TGGCACTTTTCAGTCCTCAAAAAGCAGGACGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGC
1 TGGCACTTTTCAGTCCTCAAAGAGCAGGATG-C----C-TTTCAAAGCCCACACAAGTTGGTGGC
176771 ACCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAG
60 A-CTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAG
*
176835 TCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACATAAGTCGGTGGCATTTTCCAGTCCTCAAAGA
124 TCCTCAAAGAGCAGGATGCCTTTTCAAGCCCACATAAGTCGGTGGCATTTTCCAGTCCTCAAAGA
*
176900 GCAGGACACCTTTCAAAGCCCACACGAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGATGCC
189 GCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGATGCC
* *
176965 CTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCAGGACACCTTTT
254 TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTT
*
177030 TCCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTAA
319 TCCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTAA
*
177095 AGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCAAAGCCCACAC
384 AGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACAC
*
177160 AAGTTGG
449 GAGTTGG
* * * *
177167 TGGCACCTTTCAGTCCTCAAAGAGCAAGATGCCTTTCAAAGCCCACACAAGTTGGTGGTATTTTC
1 TGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTC
*
177232 CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGCCATTTTCCAGTCCTCAA
66 CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
* * * *
177297 AGAGCTGGATGCCTTTTCAAGCCCACATAAGTCGGTAGCATTTTCCAGTCCTCAAAAAGTAGGAC
131 AGAGCAGGATGCCTTTTCAAGCCCACATAAGTCGGTGGCATTTTCCAGTCCTCAAAGAGCAGGAC
*
177362 GCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTCCT
196 GCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGATGCCTTTTCCT
177427 TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCCTTT
261 TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCCTTT
*
177492 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTAAATCCCAC
326 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCAC
*
177557 ACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTT-AAAGGCCACACGAGTTGG
391 ACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACACGAGTTGG
* * * *
177621 TGGCA-TTTTCCAGTCCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
1 TGGCACTTTT-CAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTT
* * * **
177685 CTAGTCCTCAAAGAGCAGGATGCCTTTCCTTTGCAAGGCCCACACAAGTTGGTGGCACCTTCCAG
65 CCAGTCCTCAAAGAGCAGGA---C--GCCTTT-CAAAGCCCACACAAGTTGGTGGCATTTTCCAG
* * * * *
177750 TCCTCAAAAAGCAGGACGCCTTTCCCTTTCATAGCCCACACAAGTTGGTGGCATTGTCCAGTCCT
124 TCCTCAAAGAGCAGGATGCC--T---TTTCA-AGCCCACATAAGTCGGTGGCATTTTCCAGTCCT
* * *
177815 CAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTAGTCCTCAA
183 CAAAGAGCAGGACGC-----C-TTTCAAAGCCCACACGAGTTGGTGGCACTTCTC-AGTCCTCAA
* * * * * *
177879 AGAGCATGATG-CTTTTTCTTTTCAAAACCCACACAAGTTGGTGGCACCTTTCAATCCCCAAAGA
241 AGAGCAAGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGA
* *
177943 GCAAGACA--------CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAG
305 GCAGGACACCTTTTTCCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAG
** *
177999 CAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCC-
369 CAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
178063 TTTCAAAGCCCACACGAGTTGG
434 TTTCAAAGCCCACACGAGTTGG
*
178085 TGGCACTTTTTAGTCCTCAAAGAGCAGGATGCACTTT
1 TGGCACTTTTCAGTCCTCAAAGAGCAGGATGC-CTTT
178122 ATTTTCCTTT
Statistics
Matches: 866, Mismatches: 63, Indels: 48
0.89 0.06 0.05
Matches are distributed among these distances:
453 3 0.00
454 90 0.10
455 384 0.44
456 1 0.00
457 1 0.00
459 5 0.01
460 46 0.05
461 27 0.03
462 1 0.00
463 6 0.01
464 144 0.17
465 13 0.02
466 41 0.05
471 15 0.02
472 89 0.10
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (455 bp):
TGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTC
CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
AGAGCAGGATGCCTTTTCAAGCCCACATAAGTCGGTGGCATTTTCCAGTCCTCAAAGAGCAGGAC
GCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGATGCCTTTTCCT
TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCCTTT
CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCAC
ACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACACGAGTTGG
Found at i:179480 original size:32 final size:32
Alignment explanation
Indices: 179438--179507 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
179428 AACAGAAAAA
* *
179438 GTATCAATACAAAAGTGTTGTATCGCTACAAT
1 GTATCGATACAAAAGTGTTGTATCGATACAAT
* *
179470 GTATCGATACATAAGTTTTGTATCGATACAAT
1 GTATCGATACAAAAGTGTTGTATCGATACAAT
179502 GTATCG
1 GTATCG
179508 CTACGAAGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (32 bp):
GTATCGATACAAAAGTGTTGTATCGATACAAT
Found at i:179549 original size:13 final size:13
Alignment explanation
Indices: 179531--179556 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
179521 ACCAAGGAAA
179531 TGTATCGATACAT
1 TGTATCGATACAT
179544 TGTATCGATACAT
1 TGTATCGATACAT
179557 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:181600 original size:13 final size:13
Alignment explanation
Indices: 181582--181607 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
181572 CTATTTATGA
181582 TGTATCGATACAC
1 TGTATCGATACAC
181595 TGTATCGATACAC
1 TGTATCGATACAC
181608 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:181745 original size:22 final size:22
Alignment explanation
Indices: 181690--181745 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
181680 ACAGTGATCT
181690 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
181712 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
181733 ATGAACAGTGATG
1 ATGAACAGTGATG
181746 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:181752 original size:10 final size:10
Alignment explanation
Indices: 181733--181763 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
181723 GTATCGATAC
181733 ATGAACAGTG
1 ATGAACAGTG
*
181743 ATGAATAGTG
1 ATGAACAGTG
181753 ATGAACAGTG
1 ATGAACAGTG
181763 A
1 A
181764 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Done.