Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3652842
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 48564 characters in sequence are not A, C, G, or T
File 10 of 23
Found at i:1472146 original size:48 final size:48
Alignment explanation
Indices: 1472011--1472125 Score: 212
Period size: 48 Copynumber: 2.4 Consensus size: 48
1472001 TCTGGAATTT
*
1472011 CCCAGAATGTGTCGATACATTATGCAATGTCTCGATACATCTGGAAAA
1 CCCAGAATGTATCGATACATTATGCAATGTCTCGATACATCTGGAAAA
*
1472059 CCCAGAATGTATCGATACATTATGCAATGTCTTGATACATCTGGAAAA
1 CCCAGAATGTATCGATACATTATGCAATGTCTCGATACATCTGGAAAA
1472107 CCCAGAATGTATCGATACA
1 CCCAGAATGTATCGATACA
1472126 ATTTTAATTG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (48 bp):
CCCAGAATGTATCGATACATTATGCAATGTCTCGATACATCTGGAAAA
Found at i:1473364 original size:80 final size:79
Alignment explanation
Indices: 1473261--1473536 Score: 245
Period size: 80 Copynumber: 3.4 Consensus size: 79
1473251 GCCATCTCCG
* * **
1473261 AGGGGATATTCCAA-CCTCGTTTTTACCTCTAAAAAATTAAAATTTTCATTTTTGGCGATACTTC
1 AGGGGATACTCCAACCCT-ATTTTTACCTCTAAAAAATTAAAATTTTCATTTTAAG-GATACTTC
*
1473325 AACCCTGCCATTTCTT
64 AACCCTGCCATTTCTA
* * * *
1473341 AGGGGATACTCCAAGCCC-ATTTTTACTTCT-AAAAA-TACCTAATTTTCCAACTTCAAGGATAC
1 AGGGGATACTCCAA-CCCTATTTTTACCTCTAAAAAATTA--AAATTTT-C-ATTTTAAGGATAC
* * *
1473403 TCCAACCCTGCCATCTCCA
61 TTCAACCCTGCCATTTCTA
* * * * *
1473422 AAGGGATACTCGAACCCTATTTTTCCCTCTAAAAAATCAAAATTTTCATTTTCAGAGATACTTCA
1 AGGGGATACTCCAACCCTATTTTTACCTCTAAAAAATTAAAATTTTCATTTTAAG-GATACTTCA
* ** *
1473487 ACCTTATCATTTCTG
65 ACCCTGCCATTTCTA
* *
1473502 AGGAGATACTCCAACCCTATTTTTACATCTAAAAA
1 AGGGGATACTCCAACCCTATTTTTACCTCTAAAAA
1473537 TATCCAATTT
Statistics
Matches: 153, Mismatches: 33, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
78 2 0.01
79 10 0.07
80 80 0.52
81 49 0.32
82 11 0.07
83 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.10, T:0.34
Consensus pattern (79 bp):
AGGGGATACTCCAACCCTATTTTTACCTCTAAAAAATTAAAATTTTCATTTTAAGGATACTTCAA
CCCTGCCATTTCTA
Found at i:1473466 original size:81 final size:81
Alignment explanation
Indices: 1473317--1473468 Score: 182
Period size: 81 Copynumber: 1.9 Consensus size: 81
1473307 CATTTTTGGC
* * ** * * **
1473317 GATACTTCAACCCTGCCATTTCTTAGGGGATACTCCAAGCCCATTTTTACTTCTAAAAATACCTA
1 GATACTCCAACCCTGCCATCTCCAAAGGGATACTCCAAGCCCATTTTTACCTCTAAAAATACAAA
1473382 ATTTTCCAACTTCAAG
66 ATTTTCCAACTTCAAG
* *
1473398 GATACTCCAACCCTGCCATCTCCAAAGGGATACTCGAA-CCCTATTTTTCCCTCTAAAAA-ATCA
1 GATACTCCAACCCTGCCATCTCCAAAGGGATACTCCAAGCCC-ATTTTTACCTCTAAAAATA-CA
1473461 AAATTTTC
64 AAATTTTC
1473469 ATTTTCAGAG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
80 4 0.07
81 55 0.93
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (81 bp):
GATACTCCAACCCTGCCATCTCCAAAGGGATACTCCAAGCCCATTTTTACCTCTAAAAATACAAA
ATTTTCCAACTTCAAG
Found at i:1473512 original size:161 final size:161
Alignment explanation
Indices: 1473248--1473604 Score: 423
Period size: 161 Copynumber: 2.2 Consensus size: 161
1473238 ATACTCTAGC
* * * * * * *
1473248 CCCGCCATCTCCGAGGGGATATTCCAACCTCGTTTTTACCTCTAAAAAATTAAAATTTTCATTTT
1 CCCGCCATCTCCAAAGGGATACTCGAACCCCATTTTTACCTCTAAAAAATCAAAATTTTCATTTT
** * * * * *
1473313 TGGCGATACTTCAACCCTGCCATTTCTTAGGGGATACTCCAAGCCC-ATTTTTACTTCTAAAAAT
66 CAGAGATACTTCAACCCTACCATTTCTGAGGAGATACTCCAA-CCCTATTTTTACATCTAAAAAT
1473377 A-CCTAATTTTCCAACTTCAAGGATACTCCAA-
130 ATCC-AATTTTCCAACTTCAAGGATACTCCAAT
* *
1473408 CCCTGCCATCTCCAAAGGGATACTCGAACCCTATTTTTCCCTCTAAAAAATCAAAATTTTCATTT
1 CCC-GCCATCTCCAAAGGGATACTCGAACCCCATTTTTACCTCTAAAAAATCAAAATTTTCATTT
* *
1473473 TCAGAGATACTTCAACCTTATCATTTCTGAGGAGATACTCCAACCCTATTTTTACATCTAAAAAT
65 TCAGAGATACTTCAACCCTACCATTTCTGAGGAGATACTCCAACCCTATTTTTACATCTAAAAAT
* * **
1473538 ATCCAATTTTCTATCTTCGGGGATACTCCAAT
130 ATCCAATTTTCCAACTTCAAGGATACTCCAAT
** * * *
1473570 CCCGTTATCTCTAAGGGGATACTCTAACCCCATTT
1 CCCGCCATCTCCAAAGGGATACTCGAACCCCATTT
1473605 GTTTCAAAAT
Statistics
Matches: 165, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
160 6 0.04
161 154 0.93
162 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (161 bp):
CCCGCCATCTCCAAAGGGATACTCGAACCCCATTTTTACCTCTAAAAAATCAAAATTTTCATTTT
CAGAGATACTTCAACCCTACCATTTCTGAGGAGATACTCCAACCCTATTTTTACATCTAAAAATA
TCCAATTTTCCAACTTCAAGGATACTCCAAT
Found at i:1475025 original size:20 final size:20
Alignment explanation
Indices: 1475002--1475074 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1474992 ACAATTCAAA
1475002 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1475022 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
1475043 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1475063 GTATCGATACAT
1 GTATCGATACAT
1475075 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1475046 original size:21 final size:21
Alignment explanation
Indices: 1475020--1475095 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1475010 ACATGTTGCA
1475020 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
1475041 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
1475061 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
1475082 ATGTATCGATACAT
1 ATGTATCGATACAT
1475096 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:1475053 original size:41 final size:41
Alignment explanation
Indices: 1475002--1475095 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1474992 ACAATTCAAA
*
1475002 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1475043 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1475084 GTATCGATACAT
1 GTATCGATACAT
1475096 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:1475152 original size:13 final size:13
Alignment explanation
Indices: 1475134--1475159 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1475124 TACAGCAAGT
1475134 ATGTATCGATACA
1 ATGTATCGATACA
1475147 ATGTATCGATACA
1 ATGTATCGATACA
1475160 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1477409 original size:21 final size:21
Alignment explanation
Indices: 1477376--1477420 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1477366 TTGCAAGTTG
*
1477376 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1477398 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1477418 AAA
1 AAA
1477421 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1479244 original size:15 final size:15
Alignment explanation
Indices: 1479224--1479254 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1479214 TAAAAATGTC
*
1479224 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1479239 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1479254 C
1 C
1479255 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1481347 original size:20 final size:20
Alignment explanation
Indices: 1481268--1481347 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
1481258 AATGTCCAAA
*
1481268 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
1481288 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
1481313 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
1481333 TTGTATCGATACATT
1 ATGTATCGATACATT
1481348 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:1481351 original size:13 final size:13
Alignment explanation
Indices: 1481333--1481371 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1481323 ACATTTTTCT
1481333 TTGTATCGATACA
1 TTGTATCGATACA
1481346 TTGTATCGATACA
1 TTGTATCGATACA
*
1481359 CTGTATCGATACA
1 TTGTATCGATACA
1481372 AGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1483822 original size:20 final size:20
Alignment explanation
Indices: 1483799--1483871 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1483789 ACAATTCAAA
1483799 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1483819 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
1483840 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1483860 GTATCGATACAT
1 GTATCGATACAT
1483872 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1483843 original size:21 final size:21
Alignment explanation
Indices: 1483817--1483892 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1483807 ACATGTTGCA
1483817 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
1483838 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
1483858 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
1483879 ATGTATCGATACAT
1 ATGTATCGATACAT
1483893 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:1483850 original size:41 final size:41
Alignment explanation
Indices: 1483799--1483892 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1483789 ACAATTCAAA
*
1483799 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1483840 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1483881 GTATCGATACAT
1 GTATCGATACAT
1483893 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:1483949 original size:13 final size:13
Alignment explanation
Indices: 1483931--1483956 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1483921 TACAGCAAGT
1483931 ATGTATCGATACA
1 ATGTATCGATACA
1483944 ATGTATCGATACA
1 ATGTATCGATACA
1483957 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1487451 original size:20 final size:20
Alignment explanation
Indices: 1487422--1487463 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1487412 AAAATTAAAG
*
1487422 AATATTTAAAT-TTAATTATA
1 AATATATAAATATTAA-TATA
1487442 AATATATAAATATTAATATA
1 AATATATAAATATTAATATA
1487462 AA
1 AA
1487464 AAAATTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AATATATAAATATTAATATA
Found at i:1490414 original size:13 final size:13
Alignment explanation
Indices: 1490396--1490421 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1490386 TACACAAAGT
1490396 ATGTATCGATACA
1 ATGTATCGATACA
1490409 ATGTATCGATACA
1 ATGTATCGATACA
1490422 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1490419 original size:32 final size:33
Alignment explanation
Indices: 1490378--1490441 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
1490368 TAGCCAAACT
**
1490378 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1490410 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1490442 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1496616 original size:13 final size:13
Alignment explanation
Indices: 1496598--1496633 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
1496588 CATTTTTCTT
1496598 TGTATCGATACAA
1 TGTATCGATACAA
*
1496611 TGTATCGATACAC
1 TGTATCGATACAA
1496624 TGTATCGATA
1 TGTATCGATA
1496634 TAGGGGGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1499187 original size:32 final size:33
Alignment explanation
Indices: 1499146--1499207 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
1499136 TAGCCAAACT
**
1499146 TGTATCGATACACAAAGTA-TGTATCGATATAA
1 TGTATCGATACACAAAAAATTGTATCGATATAA
1499178 TGTATCGATACACAAAAAATTGTATCGATA
1 TGTATCGATACACAAAAAATTGTATCGATA
1499208 CATTGGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATATAA
Found at i:1500207 original size:21 final size:22
Alignment explanation
Indices: 1500183--1500225 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
1500173 AAATCTAACT
1500183 CTTAATTTATCTAATA-AATTA
1 CTTAATTTATCTAATATAATTA
1500204 CTTAATTTATCTAATATAATTA
1 CTTAATTTATCTAATATAATTA
1500226 TCACATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (22 bp):
CTTAATTTATCTAATATAATTA
Found at i:1500350 original size:15 final size:15
Alignment explanation
Indices: 1500316--1500357 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
1500306 AAAAATTCAT
*
1500316 ATTTAATTAA-GATA
1 ATTTAATTAATAATA
1500330 ATTTTAATTAATAATA
1 A-TTTAATTAATAATA
*
1500346 ATTTATTTAATA
1 ATTTAATTAATA
1500358 TTTATTAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 1 0.04
15 19 0.79
16 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTTAATTAATAATA
Found at i:1501035 original size:189 final size:189
Alignment explanation
Indices: 1500809--1501164 Score: 604
Period size: 189 Copynumber: 1.9 Consensus size: 189
1500799 ATACGATTCT
* *
1500809 TTCACCATATATCCTAAAATGGGCATGAGCATAGTTCAGTATCTACCCATGCTTTAATCTATGTT
1 TTCACCATATATCCCAAAATGGGCATGAGCATAGTTCAGTATCTACCCATGCTTCAATCTATGTT
* * * *
1500874 AGATCTTTTAGCTCATGGTTAATGTCAGGATCTATGAGGAACATTTCCTTATAATTAACTATTTT
66 AGATCTTTTAACTCATGGTTAATGTCAGAATCTATGAGGAACATTTCCTCATAATTAACTATTCT
* *
1500939 CTGGACAGAGACTTTAATCCTATTAACCATAGTGAAGCCTATTAGTGTAATATAGTTCG
131 CTAGACAGAGACTTTAATCCTATTAACCATAATGAAGCCTATTAGTGTAATATAGTTCG
*
1500998 TTCACCATATATCCCAAAATGGGCATGAGCATAGTTCAGTATCTACCTATGCTTCAATCTATGTT
1 TTCACCATATATCCCAAAATGGGCATGAGCATAGTTCAGTATCTACCCATGCTTCAATCTATGTT
**
1501063 AGATCTTTTAACTCATGGTTAATGTCAGAATCTATGAGGAGTATTTCCTCATAATTAACTATTCT
66 AGATCTTTTAACTCATGGTTAATGTCAGAATCTATGAGGAACATTTCCTCATAATTAACTATTCT
*
1501128 CTAGATAGAGACTTTAATCCTATTAACCATAATGAAG
131 CTAGACAGAGACTTTAATCCTATTAACCATAATGAAG
1501165 ATCATTTAGG
Statistics
Matches: 155, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
189 155 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (189 bp):
TTCACCATATATCCCAAAATGGGCATGAGCATAGTTCAGTATCTACCCATGCTTCAATCTATGTT
AGATCTTTTAACTCATGGTTAATGTCAGAATCTATGAGGAACATTTCCTCATAATTAACTATTCT
CTAGACAGAGACTTTAATCCTATTAACCATAATGAAGCCTATTAGTGTAATATAGTTCG
Found at i:1502848 original size:32 final size:32
Alignment explanation
Indices: 1502812--1502984 Score: 125
Period size: 32 Copynumber: 5.4 Consensus size: 32
1502802 TACCTAAGGA
* * *
1502812 TAATGTTAACTAGCAACAACGTTACCTAGTGG
1 TAATGTTACCTAGCAGCAATGTTACCTAGTGG
* * *** *
1502844 TAATGTTACCTAACGGCAGCATTACCTAGCGG
1 TAATGTTACCTAGCAGCAATGTTACCTAGTGG
* *
1502876 TAATGTTACCTAG-AGGTAATGTTACCTAATGG
1 TAATGTTACCTAGCA-GCAATGTTACCTAGTGG
*** * *
1502908 TAGCATTATCTAGCAGCAATGCTACCTAGTGG
1 TAATGTTACCTAGCAGCAATGTTACCTAGTGG
* * **
1502940 TAATATTACCTAGC-GACAATGCTACCTAGCAG
1 TAATGTTACCTAGCAG-CAATGTTACCTAGTGG
*
1502972 TATTGTTACCTAG
1 TAATGTTACCTAG
1502985 TGGTATCATT
Statistics
Matches: 109, Mismatches: 29, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
31 1 0.01
32 107 0.98
33 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (32 bp):
TAATGTTACCTAGCAGCAATGTTACCTAGTGG
Found at i:1502851 original size:16 final size:16
Alignment explanation
Indices: 1502832--1503016 Score: 102
Period size: 16 Copynumber: 11.6 Consensus size: 16
1502822 TAGCAACAAC
*
1502832 GTTACCTAGTGGTAAT
1 GTTACCTAGCGGTAAT
* * **
1502848 GTTACCTAACGGCAGC
1 GTTACCTAGCGGTAAT
*
1502864 ATTACCTAGCGGTAAT
1 GTTACCTAGCGGTAAT
*
1502880 GTTACCTAGAGGTAAT
1 GTTACCTAGCGGTAAT
** **
1502896 GTTACCTAATGGTAGC
1 GTTACCTAGCGGTAAT
* * * *
1502912 ATTATCTAGCAGCAAT
1 GTTACCTAGCGGTAAT
* *
1502928 GCTACCTAGTGGTAAT
1 GTTACCTAGCGGTAAT
* **
1502944 ATTACCTAGCGACAAT
1 GTTACCTAGCGGTAAT
* * *
1502960 GCTACCTAGCAGTATT
1 GTTACCTAGCGGTAAT
*
1502976 GTTACCTAGTGGT-AT
1 GTTACCTAGCGGTAAT
* * * *
1502991 CATTACCAAGCAGTAGT
1 -GTTACCTAGCGGTAAT
1503008 GTTACCTAG
1 GTTACCTAG
1503017 TGGCATTATT
Statistics
Matches: 115, Mismatches: 52, Indels: 4
0.67 0.30 0.02
Matches are distributed among these distances:
15 1 0.01
16 113 0.98
17 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (16 bp):
GTTACCTAGCGGTAAT
Found at i:1502873 original size:48 final size:48
Alignment explanation
Indices: 1502821--1502989 Score: 180
Period size: 48 Copynumber: 3.5 Consensus size: 48
1502811 ATAATGTTAA
* *
1502821 CTAGCAACAACGTTACCTAGTGGTAATGTTACCTAACGGCAGCATTAC
1 CTAGCAGCAATGTTACCTAGTGGTAATGTTACCTAACGGCAGCATTAC
* * * * * *
1502869 CTAGCGGTAATGTTACCTAGAGGTAATGTTACCTAATGGTAGCATTAT
1 CTAGCAGCAATGTTACCTAGTGGTAATGTTACCTAACGGCAGCATTAC
* * * *
1502917 CTAGCAGCAATGCTACCTAGTGGTAATATTACCTAGCGACA--ATGCTAC
1 CTAGCAGCAATGTTACCTAGTGGTAATGTTACCTAACGGCAGCAT--TAC
* *
1502965 CTAGCAGTATTGTTACCTAGTGGTA
1 CTAGCAGCAATGTTACCTAGTGGTA
1502990 TCATTACCAA
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
46 2 0.02
48 96 0.98
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (48 bp):
CTAGCAGCAATGTTACCTAGTGGTAATGTTACCTAACGGCAGCATTAC
Found at i:1506250 original size:67 final size:67
Alignment explanation
Indices: 1506116--1506252 Score: 148
Period size: 67 Copynumber: 2.0 Consensus size: 67
1506106 TTTTTTACTT
* * * * * * * * *
1506116 TCTCATATACAAGTTCTTCTAATGGAGAAGTTAATCATTGGGGTCACTTACACTATTTCTGTTAC
1 TCTCATATACAAATTCTACTAATGGAAAAGTCAATCATTAGAGTCACTTACACTACTTCTATCAC
1506181 TC
66 TC
* * ***
1506183 TCTCATATACAAATTCTACTAATGGAAAAGTCAATCATTATAGTCCCTTATGTTACTTCTATCAC
1 TCTCATATACAAATTCTACTAATGGAAAAGTCAATCATTAGAGTCACTTACACTACTTCTATCAC
1506248 TC
66 TC
1506250 TCT
1 TCT
1506253 TCAATATAAT
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
67 56 1.00
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (67 bp):
TCTCATATACAAATTCTACTAATGGAAAAGTCAATCATTAGAGTCACTTACACTACTTCTATCAC
TC
Found at i:1507838 original size:16 final size:16
Alignment explanation
Indices: 1507814--1507850 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
1507804 GGCAGCAATA
* *
1507814 TAGCGGCAATGTTACC
1 TAGCAGCAATGCTACC
1507830 TAGCAGCAATGCTACC
1 TAGCAGCAATGCTACC
1507846 TAGCA
1 TAGCA
1507851 TTAAATACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (16 bp):
TAGCAGCAATGCTACC
Found at i:1508054 original size:16 final size:16
Alignment explanation
Indices: 1508033--1508087 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
1508023 TGGCATCAAA
*
1508033 ACCTAGCGACAATGCT
1 ACCTAGCGATAATGCT
*
1508049 ACCTAGC-AGTAGTGCT
1 ACCTAGCGA-TAATGCT
* *
1508065 ACCTAACGATAATGTT
1 ACCTAGCGATAATGCT
1508081 ACCTAGC
1 ACCTAGC
1508088 AGTAGTATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 1 0.03
16 29 0.94
17 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (16 bp):
ACCTAGCGATAATGCT
Found at i:1508084 original size:32 final size:32
Alignment explanation
Indices: 1508033--1508102 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
1508023 TGGCATCAAA
* *
1508033 ACCTAGCGACAATGCTACCTAGCAGTAGTGCT
1 ACCTAACGACAATGCTACCTAGCAGTAGTACT
* * *
1508065 ACCTAACGATAATGTTACCTAGCAGTAGTATT
1 ACCTAACGACAATGCTACCTAGCAGTAGTACT
1508097 ACCTAA
1 ACCTAA
1508103 AGGTAGTGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (32 bp):
ACCTAACGACAATGCTACCTAGCAGTAGTACT
Found at i:1508098 original size:16 final size:16
Alignment explanation
Indices: 1508048--1508101 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
1508038 GCGACAATGC
*
1508048 TACCTAGCAGTAGTGC
1 TACCTAGCAGTAGTGT
* *
1508064 TACCTAAC-GATAATGT
1 TACCTAGCAG-TAGTGT
*
1508080 TACCTAGCAGTAGTAT
1 TACCTAGCAGTAGTGT
1508096 TACCTA
1 TACCTA
1508102 AAGGTAGTGC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
15 1 0.03
16 28 0.93
17 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (16 bp):
TACCTAGCAGTAGTGT
Found at i:1508116 original size:32 final size:32
Alignment explanation
Indices: 1508043--1508116 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
1508033 ACCTAGCGAC
* *
1508043 AATGCTACCTAGCAGTAGTGCTACCTAACGAT
1 AATGCTACCTAGCAGTAGTACTACCTAAAGAT
* * *
1508075 AATGTTACCTAGCAGTAGTATTACCTAAAGGT
1 AATGCTACCTAGCAGTAGTACTACCTAAAGAT
*
1508107 AGTGCTACCT
1 AATGCTACCT
1508117 CATATTAGTG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (32 bp):
AATGCTACCTAGCAGTAGTACTACCTAAAGAT
Found at i:1508146 original size:16 final size:16
Alignment explanation
Indices: 1508127--1508166 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
1508117 CATATTAGTG
1508127 TTACCTAGTGAG-AACA
1 TTACCTAGTG-GTAACA
*
1508143 TTACATAGTGGTAACA
1 TTACCTAGTGGTAACA
1508159 TTACCTAG
1 TTACCTAG
1508167 CGACAATGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 1 0.05
16 20 0.95
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (16 bp):
TTACCTAGTGGTAACA
Found at i:1508231 original size:16 final size:16
Alignment explanation
Indices: 1508195--1508225 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1508185 GTATTGATAC
*
1508195 CTAGCAATAATGCTAG
1 CTAGCAAGAATGCTAG
1508211 CTAGCAAGAATGCTA
1 CTAGCAAGAATGCTA
1508226 CGTAGCGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (16 bp):
CTAGCAAGAATGCTAG
Found at i:1510080 original size:17 final size:16
Alignment explanation
Indices: 1510040--1510082 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
1510030 TTTTTGTCTA
*
1510040 AAATAAATATTTATTC
1 AAATAAATATATATTC
*
1510056 AAATTAAATATATATCTT
1 AAA-TAAATATATAT-TC
1510074 AAATAAATA
1 AAATAAATA
1510083 ATACAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 16 0.70
18 4 0.17
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATAAATATATATTC
Found at i:1511754 original size:166 final size:158
Alignment explanation
Indices: 1511435--1511815 Score: 396
Period size: 166 Copynumber: 2.4 Consensus size: 158
1511425 TTCTTTTCTA
* * *
1511435 TAAATTTTTCGGGAGGATTTTT-ATGGATTTAAAATTTTTAAAATTCATCAAATA-TTATTATTT
1 TAAATTTTTCGGGGGGATTTTTCTTGG-TTTAAAATTTTTAAAATTCATCAAATATTTATTATTC
* ** * *
1511498 AAAAATCATTTTTTAAAAATTCATTCATTTTCATTCATTTTTCATTTTTTCTTGAAATTCCCTTT
65 AAAAATCATTTTTGAAAAATTCATTCATTTTCATTCATTTTGAATTTTTTCTTAAAATTCCCTAT
* * *
1511563 TTTTTCAAAATACGGAGTTTTTTACTTCG
130 GTTTTCAAAATACGAAGTTTTTTACTCCG
**
1511592 TAAATGTTTTCGGGGGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATCATTTG
1 TAAAT-TTTTCGGGGGGATTTTTCTTGGTTTAAAATTTTTAAAATTCATCAAATATT-T-A-TT-
*
1511657 ATTCACATTAAATCATTTTTGAAAAATTCATTCATATTT-A-TGAGTTTTGAATTTTTTCCTTAA
61 ATTCA-A--AAATCATTTTTGAAAAATTCATTCAT-TTTCATTCA-TTTTGAATTTTTT-CTTAA
* *
1511720 AATT-CCTATGTTTTCAGAATACGAATTTTTTTACTCCG
120 AATTCCCTATGTTTTCAAAATACGAAGTTTTTTACTCCG
* * * * *
1511758 TAAATATTTTGGGGGGGCA-TTTTCTTTAGTTTAAAATTTTTCAAATGCATCTAATATT
1 TAAAT-TTTTCGGGGGG-ATTTTTC-TTGGTTTAAAATTTTTAAAATTCATCAAATATT
1511816 GTTATTAAGC
Statistics
Matches: 185, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
157 5 0.03
158 41 0.22
159 4 0.02
160 1 0.01
161 1 0.01
162 2 0.01
163 4 0.02
164 1 0.01
165 2 0.01
166 85 0.46
167 39 0.21
ACGTcount: A:0.30, C:0.11, G:0.10, T:0.49
Consensus pattern (158 bp):
TAAATTTTTCGGGGGGATTTTTCTTGGTTTAAAATTTTTAAAATTCATCAAATATTTATTATTCA
AAAATCATTTTTGAAAAATTCATTCATTTTCATTCATTTTGAATTTTTTCTTAAAATTCCCTATG
TTTTCAAAATACGAAGTTTTTTACTCCG
Found at i:1512028 original size:14 final size:15
Alignment explanation
Indices: 1512009--1512057 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 15
1511999 AAATTTTATC
1512009 TTAATTTTTA-AATT
1 TTAATTTTTATAATT
1512023 TTAATTTTTATAATT
1 TTAATTTTTATAATT
*
1512038 TAATCATTTTTATTAATT
1 T--TAATTTTTA-TAATT
1512056 TT
1 TT
1512058 TACAATATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 10 0.33
15 5 0.17
16 1 0.03
17 8 0.27
18 6 0.20
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
TTAATTTTTATAATT
Found at i:1512222 original size:18 final size:18
Alignment explanation
Indices: 1512199--1512237 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1512189 AGTCATAAAT
1512199 AAAAATAATAAAAAATAA
1 AAAAATAATAAAAAATAA
* **
1512217 AAAAATGATGGAAAATAA
1 AAAAATAATAAAAAATAA
1512235 AAA
1 AAA
1512238 CAACTTTCGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (18 bp):
AAAAATAATAAAAAATAA
Found at i:1513932 original size:153 final size:155
Alignment explanation
Indices: 1513587--1513932 Score: 416
Period size: 156 Copynumber: 2.2 Consensus size: 155
1513577 TTGGGTCCGC
* * *
1513587 TTTTATGCCGAAGGTGGGTATTTAGGATAATGTCATCTCATCTATAATCCTTTTTAGGTCGTTTA
1 TTTTATGCCAAAGGTGGGTATTTAGGAT-ATGTCATCTCATCTACAATACTTTTTAGGTCGTTTA
* *
1513652 AGGGTATCAGGCACTTCCACGTCGAAGGTATCCCCTAAGGGTTTTTTCATAATTCTTTTAGAATC
65 AGGGTATCAGGCACTTCCACGTCGAAGATATCCCCTAAGGGATTTTTCATAATTCTTTTAGAATC
* ** * **
1513717 GAGTTTTAAGTTGTCACCGGGTACAT
130 CAGTCCTAAGTTATCACCAAGTACAT
* * *
1513743 TTTTATGCTAAAAGTGGGTATTTAGGATATGGTCATCTCATCTACAATACTTTTTA-GTCTTTTA
1 TTTTATGCCAAAGGTGGGTATTTAGGATAT-GTCATCTCATCTACAATACTTTTTAGGTCGTTTA
* * * *
1513807 GGGGTATCTGGCACTTCTACG-CTGAAGATATCCTCTAAGGGCATTTTT-ATAATT-TTTTAGAA
65 AGGGTATCAGGCACTTCCACGTC-GAAGATATCCCCTAAGGG-ATTTTTCATAATTCTTTTAGAA
*
1513869 -CCAGTCCTAAGTTATCACCAAGT-CTGT
128 TCCAGTCCTAAGTTATCACCAAGTAC-AT
*
1513896 TTTTATGCCAAAGGTGGGTATCTAGGATATGTTCATC
1 TTTTATGCCAAAGGTGGGTATTTAGGATATG-TCATC
1513933 CCTTCTATAA
Statistics
Matches: 163, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
152 2 0.01
153 50 0.31
154 9 0.06
155 49 0.30
156 53 0.33
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (155 bp):
TTTTATGCCAAAGGTGGGTATTTAGGATATGTCATCTCATCTACAATACTTTTTAGGTCGTTTAA
GGGTATCAGGCACTTCCACGTCGAAGATATCCCCTAAGGGATTTTTCATAATTCTTTTAGAATCC
AGTCCTAAGTTATCACCAAGTACAT
Found at i:1515413 original size:2 final size:2
Alignment explanation
Indices: 1515406--1515436 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1515396 TTGAATAGAT
1515406 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1515437 TCAGTTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1516594 original size:16 final size:18
Alignment explanation
Indices: 1516556--1516601 Score: 69
Period size: 16 Copynumber: 2.7 Consensus size: 18
1516546 TTTTTTGTAT
*
1516556 TATTTATTTAGATATACA
1 TATTTATTTAGATATAAA
1516574 TATTTATTT-GAT-TAAA
1 TATTTATTTAGATATAAA
1516590 TATTTATTTAGA
1 TATTTATTTAGA
1516602 CAAGAATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 12 0.46
17 5 0.19
18 9 0.35
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (18 bp):
TATTTATTTAGATATAAA
Found at i:1516815 original size:18 final size:20
Alignment explanation
Indices: 1516790--1516839 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 20
1516780 TTATTTATTT
1516790 ATTTATTTTGATTA-AATTA
1 ATTTATTTTGATTATAATTA
*
1516809 A-TTATTTT-ATTATAGTTA
1 ATTTATTTTGATTATAATTA
1516827 ATTTTATTTTGAT
1 A-TTTATTTTGAT
1516840 AATGAATACA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 4 0.15
18 12 0.46
19 1 0.04
20 7 0.27
21 2 0.08
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (20 bp):
ATTTATTTTGATTATAATTA
Found at i:1523688 original size:61 final size:61
Alignment explanation
Indices: 1523534--1523814 Score: 249
Period size: 61 Copynumber: 4.8 Consensus size: 61
1523524 TGAGAGAAGA
* * * * * * * * *
1523534 GTGCCAATGTGCTAATTCAAGG-TCAGTGACATTAGACTTGAGGATGAAAAGAATGATAAAA
1 GTGCCAATATGCTGATTCAAGGCT-AGCGATATTAGGCTTAAAGATGAGAAGAATGATAAAG
** * * * *
1523595 GTGCTGATATGCTGATTCACGGCTAACAATATTAGGCTTGAAGATGAGAAGAATGATAAAG
1 GTGCCAATATGCTGATTCAAGGCTAGCGATATTAGGCTTAAAGATGAGAAGAATGATAAAG
* * * *
1523656 GTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGC-T-----T-A-AAG-ATGACAAAG
1 GTGCCAATATGCTGATTCAAGGCTAGCGATATTAGGCTTAAAGATGAGAAGAATGATAAAG
* * * *
1523708 GTGCCAATGTGTTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAGAATGATAAAG
1 GTGCCAATATGCTGATTCAAGGCTAGCGATATTAGGCTTAAAGATGAGAAGAATGATAAAG
** *
1523769 GTGCCAATATGCTGATTCAAGGCTAATGATATTGGGCTTAAAGATG
1 GTGCCAATATGCTGATTCAAGGCTAGCGATATTAGGCTTAAAGATG
1523815 CAAAGGTGCC
Statistics
Matches: 175, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
52 40 0.23
53 4 0.02
54 1 0.01
55 1 0.01
58 1 0.01
59 1 0.01
60 4 0.02
61 122 0.70
62 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (61 bp):
GTGCCAATATGCTGATTCAAGGCTAGCGATATTAGGCTTAAAGATGAGAAGAATGATAAAG
Found at i:1523730 original size:52 final size:52
Alignment explanation
Indices: 1523647--1524052 Score: 339
Period size: 52 Copynumber: 7.7 Consensus size: 52
1523637 GATGAGAAGA
* * *
1523647 ATGATAAAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTTAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAG
* * * * * * *
1523699 ATGACAAAGGTGCCAATGTGTTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGAC-T-----T-A-AAG
* * *
1523759 AATGATAAAGGTGCCAATATGCTGATTCAAGGCTAATGATATTGGGCTTAAAG
1 -ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAG
* * * *
1523812 ATG-CAAAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAATG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAG
* ** * * * *
1523863 ATGAAAAAAATGCCAATGTGCTGATTCAAGGCCAGTGACATTGGGCTTAAAA
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAG
* * * * * * * **
1523915 ATAATAACGATGCCAATATACTAATTCAAGGCTAGCGATATCAGACTTAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAG
* * * *
1523967 ATAATAAAGGTGCTAATATGCTGATTCAAGGCTAGTGATATTAGACTT-AAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAG
* * **
1524018 AAAGAAAAAGGTGAGAATATGCTGATTCAAGGCCA
1 -ATGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1524053 ACAACATTGG
Statistics
Matches: 289, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
51 47 0.16
52 192 0.66
53 4 0.01
54 1 0.00
55 1 0.00
58 1 0.00
59 1 0.00
60 4 0.01
61 38 0.13
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (52 bp):
ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAG
Found at i:1523756 original size:113 final size:113
Alignment explanation
Indices: 1523604--1524050 Score: 421
Period size: 104 Copynumber: 4.1 Consensus size: 113
1523594 AGTGCTGATA
* * * * * * *
1523604 TGCTGATTCACGGCTAACAATATTAGGCTTGAAGATGAGAAGAATGATAAAGGTGCCAATATGTT
1 TGCTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAGAATGATAAAGGTGCCAATATGCT
*
1523669 GATTCAAGGCCAGCGATATTGGGCTTAAAGATGACAAAGGTGCCAATG
66 GATTCAAGGCCAGTGATATTGGGCTTAAAGATGACAAAGGTGCCAATG
*
1523717 TGTTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAGAATGATAAAGGTGCCAATATGCT
1 TGCTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAGAATGATAAAGGTGCCAATATGCT
* *
1523782 GATTCAAGGCTAATGATATTGGGCTTAAAGATG-CAAAGGTGCCAATG
66 GATTCAAGGCCAGTGATATTGGGCTTAAAGATGACAAAGGTGCCAATG
* * * * *
1523829 TGCTGATTCAAGGCCAGTGACATTGGACTTAATGAT--G-A-AA--A-AAA--TGCCAATGTGCT
1 TGCTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAGAATGATAAAGGTGCCAATATGCT
* * * * * * *
1523885 GATTCAAGGCCAGTGACATTGGGCTTAAAAATAATAACGATGCCAATA
66 GATTCAAGGCCAGTGATATTGGGCTTAAAGATGACAAAGGTGCCAATG
* * * * *
1523933 TACTAATTCAAGGCTAGCGATATCAGACTTAAAGAT-------A--ATAAAGGTGCTAATATGCT
1 TGCTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAGAATGATAAAGGTGCCAATATGCT
* * * * * ** *
1523989 GATTCAAGGCTAGTGATATTAGACTT-AAGAAAGAAAAAGGTGAGAATA
66 GATTCAAGGCCAGTGATATTGGGCTTAAAG-ATGACAAAGGTGCCAATG
1524037 TGCTGATTCAAGGC
1 TGCTGATTCAAGGC
1524051 CAACAACATT
Statistics
Matches: 279, Mismatches: 50, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
101 2 0.01
102 3 0.01
103 41 0.15
104 93 0.33
105 3 0.01
106 1 0.00
108 2 0.01
109 1 0.00
110 1 0.00
112 45 0.16
113 87 0.31
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (113 bp):
TGCTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAGAATGATAAAGGTGCCAATATGCT
GATTCAAGGCCAGTGATATTGGGCTTAAAGATGACAAAGGTGCCAATG
Found at i:1524066 original size:52 final size:51
Alignment explanation
Indices: 1523972--1524073 Score: 123
Period size: 52 Copynumber: 2.0 Consensus size: 51
1523962 TAAAGATAAT
** * *** *
1523972 AAAGGTGCTAATATGCTGATTCAAGGCTAGTGATATTAGACTTAAGAAAGAA
1 AAAGGTGAGAATATGCTGATTCAAGGCCAACAACATTAGACTT-AGAAAGAA
*
1524024 AAAGGTGAGAATATGCTGATTCAAGGCCAACAACATTGGACTTAGAAAGA
1 AAAGGTGAGAATATGCTGATTCAAGGCCAACAACATTAGACTTAGAAAGA
1524074 GATGGTTTGA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
51 7 0.17
52 35 0.83
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (51 bp):
AAAGGTGAGAATATGCTGATTCAAGGCCAACAACATTAGACTTAGAAAGAA
Found at i:1524197 original size:32 final size:32
Alignment explanation
Indices: 1524151--1524671 Score: 215
Period size: 32 Copynumber: 16.2 Consensus size: 32
1524141 AACTTGTGTG
* * * *
1524151 GGCTTTTGAAAAGGTTGCTACTGGCTTATATA
1 GGCTTTAGAGAAGGTTGCCACTGACTTATATA
* * *
1524183 GGCTTTAGAGAAGGTTACCACTGACTTGTGTA
1 GGCTTTAGAGAAGGTTGCCACTGACTTATATA
* ** *
1524215 GGCTTTTGA-AGAGGTTGCCACCAACTTCTATA
1 GGCTTTAGAGA-AGGTTGCCACTGACTTATATA
* * * *
1524247 GGCTTTAAAGAAGGGCTGCCA-TCAGCTTGTAT-
1 GGCTTTAGAGAA-GGTTGCCACTGA-CTTATATA
* ** *
1524279 GGTCTTT-GAGAAGGGTTGCTACCAACTTATATG
1 GG-CTTTAGAGAA-GGTTGCCACTGACTTATATA
** **
1524312 GGCTTT-GAGGGGGTTGCCACTGACTCGTATA
1 GGCTTTAGAGAAGGTTGCCACTGACTTATATA
* * * * * *
1524343 AGCTTTAGAGAAGGTAGCCACCCGACTTGTGTG
1 GGCTTTAGAGAAGGTTGCCA-CTGACTTATATA
** * *
1524376 GGCTGTT-GA-AGAGGTTGCCACCAACTTGA-GTG
1 GGCT-TTAGAGA-AGGTTGCCACTGACTT-ATATA
* * * *
1524408 GGCTTTAGATAAGGTTGCCACCGACTTATGTG
1 GGCTTTAGAGAAGGTTGCCACTGACTTATATA
* * ** * *
1524440 GGTTTTTGAGAAGGGTTGCCA-TCGGTTTGTGT-
1 GGCTTTAGAGAA-GGTTGCCACT-GACTTATATA
* *
1524472 GGCTTTAGAGAAAGGTTGCCACCTG-CTTATGTG
1 GGCTTTAGAG-AAGGTTGCCA-CTGACTTATATA
* *
1524505 GGCTTTAGAGAAGAGTTGCCATTGACTTATGTA
1 GGCTTTAGAGAAG-GTTGCCACTGACTTATATA
* * * * *
1524538 GGCTTT-GAAAAGGATTGCCATTGACTTGTGTG
1 GGCTTTAGAGAAGG-TTGCCACTGACTTATATA
* * *
1524570 GGCTTTA-AGAATGGTTGCCACCGACTTGTGTA
1 GGCTTTAGAGAA-GGTTGCCACTGACTTATATA
* * ** * *
1524602 AGTTTTAGAGGGGGTTGCCACTGACTTGTATG
1 GGCTTTAGAGAAGGTTGCCACTGACTTATATA
* * *
1524634 GGCTTTAGAGAAGGTTACCA-TCGACTTTTGTA
1 GGCTTTAGAGAAGGTTGCCACT-GACTTATATA
1524666 GGCTTT
1 GGCTTT
1524672 TGAAGAGATT
Statistics
Matches: 380, Mismatches: 81, Indels: 56
0.74 0.16 0.11
Matches are distributed among these distances:
31 25 0.07
32 258 0.68
33 94 0.25
34 3 0.01
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (32 bp):
GGCTTTAGAGAAGGTTGCCACTGACTTATATA
Found at i:1524220 original size:64 final size:64
Alignment explanation
Indices: 1524142--1525667 Score: 624
Period size: 64 Copynumber: 23.5 Consensus size: 64
1524132 AGATACCACA
* * * * * *
1524142 ACTTGTGTGGGCTTTTGAAAAGGTTGCTACTGGCTTATATAGGCTTTAGAGAAGGTTACCACTG
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACTG
* * * * * * *
1524206 ACTTGTGTAGGCTTTTGAAGAGGTTGCCACCAACTTCTATAGGCTTTAAAGAAGGGCTGCCA-TC
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAA-GGTTGCCACTG
* * * * **
1524270 AGCTTGTAT-GG-TCTTTGAGAAGGGTTGCTACCAACTTATATGGGCTTT-GAGGGGGTTGCCAC
1 A-CTTGTGTAGGCT-TTTGA-AAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCAC
1524332 TG
63 TG
* * * * * * * *
1524334 ACTCGTATAAGCTTTAGAGAAGGTAGCCACCCGACTTGTGTGGGCTGTT-GA-AGAGGTTGCCAC
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCA-CCGACTTATATGGGCT-TTAGAGA-AGGTTGCCAC
**
1524397 CA
63 TG
* * * * * * *
1524399 ACTTGAGTGGGCTTTAGATAAGGTTGCCACCGACTTATGTGGGTTTTTGAGAAGGGTTGCCA-TC
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAA-GGTTGCCACT-
1524463 G
64 G
** * * *
1524464 GTTTGTGT-GGCTTTAGAGAAAGGTTGCCACCTG-CTTATGTGGGCTTTAGAGAAGAGTTGCCAT
1 ACTTGTGTAGGCTTTTGA-AAAGGTTGCCACC-GACTTATATGGGCTTTAGAGAAG-GTTGCCAC
1524527 TG
63 TG
* ** * * *
1524529 ACTTATGTAGGC-TTTGAAAAGGATTGCCATTGACTTGTGTGGGCTTTA-AGAATGGTTGCCACC
1 ACTTGTGTAGGCTTTTGAAAAGG-TTGCCACCGACTTATATGGGCTTTAGAGAA-GGTTGCCACT
1524592 G
64 G
* *** * * *
1524593 ACTTGTGTAAG-TTTTAGAGGGGGTTGCCACTGACTTGTATGGGCTTTAGAGAAGGTTACCA-TC
1 ACTTGTGTAGGCTTTT-GAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACT-
1524656 G
64 G
* * * * * * *
1524657 ACTTTTGTAGGCTTTTGAAGAGATTACCACCAACTTATGTGGGCTTTTTGTGGGCTTTAAGAAAG
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGC---TT-T-AG-----AG-AAG
*
1524722 GTTTTCCACT-
55 G-TTGCCACTG
* ** * * *
1524732 AGC-T-TGTACGAGC-TTTGAGAAGGGCCGCCACCAAC-T-TGTGGGCTTTAG-GAAGGGTTACC
1 A-CTTGTGTA-G-GCTTTTGA-AAAGGTTGCCACCGACTTATATGGGCTTTAGAGAA-GGTTGCC
*
1524791 ACCG
61 ACTG
* * *** * ** * ** **
1524795 ACTTGTGTGGGCTTTAAGAGGAAAAAAATG-AAAAGAATTCCACCAGCTTATGTGGGCTTTAAGA
1 ACTTGTGTAGGCTTT----TGAAAAGGTTGCCACCGACTT-----A---TATG-GGCTTTAGAGA
*
1524859 AGGGTTGCCACCG
53 A-GGTTGCCACTG
* * * * * * * * *
1524872 ACTTGTGTGGGCTTTAGAGAAGGCTACCACTGACTTGTGTCGGCTTTAGAGAAGGTTGCCACTG
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACTG
* * * * *
1524936 ACTTTTGT-GAGCTTTTGAAAAGGTTGCCACCAACTTGTATGGGCTTTAGAAAAGGGTTGCCACC
1 ACTTGTGTAG-GCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAA-GGTTGCCACT
1525000 G
64 G
* * ** * * * *
1525001 GCTTGTGTAGGC-TTTGAGAAGGGTTGGTACCAACTTATGTGGGCTTT-GAGAAGGGTTGCCGCC
1 ACTTGTGTAGGCTTTTGA-AAAGGTTGCCACCGACTTATATGGGCTTTAGAGAA-GGTTGCCACT
*
1525064 A
64 G
* * * * * *
1525065 ACTTGTATGGGC-TTTGAAAAGGGTTGCCACTGACTTGTATGGGCTTTAG-CAAGGTTACCACTG
1 ACTTGTGTAGGCTTTTGAAAA-GGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACTG
* * * * ** * * * * *
1525128 ACTTGTGTGGGCTTTAGAAAGGGTTACCGTCGACTTGTGTGGGCTTTAAAAAAGGTTGCCACCG
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACTG
* * * * ** *
1525192 ACTTGTGTGGGCTTTTGAAGAGGTTGCCACCGACTTATGTGGGCTTTAAAGGGGGTTGCCA-TAC
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACT-G
* * *** * *
1525256 ACTTGTGTGGGCTTTAGATGGGGTTGCCACCGACTTGTATGGGCTTTAGAGAAGGTTGCCACCG
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACTG
* ** * * * * * * **
1525320 ACTTGTGTGGGCTTTTGAAGGGGTTGCCATCAACTTGTGTAGGCTTTA-AGAGGGTTGCCACCA
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACTG
* * * * * * *
1525383 ACTTGTGTGGGC-TTTGAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAGGGTTGCCATTG
1 ACTTGTGTAGGCTTTTGA-AAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACTG
* * * * * *
1525447 ACTTGTGTGGGCTTTT-AAAGTGGTTGCCACCAACTTGTGTGGGCTTTA-AGAAGGGTTACCACT
1 ACTTGTGTAGGCTTTTGAAA-AGGTTGCCACCGACTTATATGGGCTTTAGAGAA-GGTTGCCACT
1525510 G
64 G
* * * * * * * **
1525511 ACTTGTGTGGGCTTTAG-AAGGGTTCCCACCGACTTGTGTGGGCTTTTGA-AGAGGTTGCCACCA
1 ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGA-AGGTTGCCACTG
* * * * * * *
1525574 ACTTTTGT-GGAC-TTTGAGTAGGGTTGCCATCGACTTGTGTGGGCTTTAGAGAAGAGTTGCCAT
1 ACTTGTGTAGG-CTTTTGA-AAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAG-GTTGCCAC
1525637 TG
63 TG
* * *
1525639 ACATGTGT-GGAC-TTTGAGAAGGGTGCCAC
1 ACTTGTGTAGG-CTTTTGAAAAGGTTGCCAC
1525668 TAATTTGTGT
Statistics
Matches: 1134, Mismatches: 239, Indels: 178
0.73 0.15 0.11
Matches are distributed among these distances:
62 21 0.02
63 172 0.15
64 583 0.51
65 245 0.22
66 12 0.01
67 4 0.00
68 1 0.00
69 2 0.00
70 1 0.00
71 2 0.00
73 5 0.00
74 18 0.02
75 16 0.01
76 22 0.02
77 30 0.03
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (64 bp):
ACTTGTGTAGGCTTTTGAAAAGGTTGCCACCGACTTATATGGGCTTTAGAGAAGGTTGCCACTG
Found at i:1524870 original size:32 final size:33
Alignment explanation
Indices: 1524834--1525685 Score: 689
Period size: 32 Copynumber: 26.7 Consensus size: 33
1524824 GAAAAGAATT
*
1524834 CCACCAG-CTTATGTGGGCTTTAAGAAGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
* *
1524866 CCACC-GACTTGTGTGGGCTTTAGAGAA-GGCTA
1 CCACCAGACTTGTGTGGGCTTTA-AGAAGGGTTG
* *
1524898 CCA-CTGACTTGTGTCGGCTTTAGAGAA-GGTTG
1 CCACCAGACTTGTGTGGGCTTTA-AGAAGGGTTG
* * *
1524930 CCA-CTGACTTTTGTGAGCTTTTGAA-AA-GGTTG
1 CCACCAGACTTGTGTGGGC-TTT-AAGAAGGGTTG
* *
1524962 CCACCA-ACTTGTATGGGCTTTAGAAAAGGGTTG
1 CCACCAGACTTGTGTGGGCTTTA-AGAAGGGTTG
* * *
1524995 CCACC-GGCTTGTGTAGGCTTTGAGAAGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
** * *
1525027 GTACCA-ACTTATGTGGGCTTTGAGAAGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
* *
1525059 CCGCCA-ACTTGTATGGGCTTTGAA-AAGGGTTG
1 CCACCAGACTTGTGTGGGCTTT-AAGAAGGGTTG
* * *
1525091 CCA-CTGACTTGTATGGGCTTT-AGCAA-GGTTA
1 CCACCAGACTTGTGTGGGCTTTAAG-AAGGGTTG
* *
1525122 CCA-CTGACTTGTGTGGGCTTT-AGAAAGGGTTA
1 CCACCAGACTTGTGTGGGCTTTAAG-AAGGGTTG
** * *
1525154 CCGTC-GACTTGTGTGGGCTTTAAAAAAGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
*
1525186 CCACC-GACTTGTGTGGGCTTT-TGAAGAGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAG-GGTTG
* *
1525218 CCACC-GACTTATGTGGGCTTTAA-AGGGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGA-AGGGTTG
* * *
1525250 CCA-TACACTTGTGTGGGCTTT-AGATGGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGA-AGGGTTG
*
1525282 CCACC-GACTTGTATGGGCTTTAGAGAA-GGTTG
1 CCACCAGACTTGTGTGGGCTTTA-AGAAGGGTTG
*
1525314 CCACC-GACTTGTGTGGGCTTT-TGAAGGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAA-GGGTTG
* *
1525346 CCATCA-ACTTGTGTAGGCTTTAAG-AGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
*
1525377 CCACCA-ACTTGTGTGGGCTTTGAGAAGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
1525409 CCACCA-ACTTGTGTGGGCTTT-AGAGAGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGA-AGGGTTG
** *
1525441 CCA-TTGACTTGTGTGGGCTTTTA-AAGTGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAG-GGTTG
*
1525473 CCACCA-ACTTGTGTGGGCTTTAAGAAGGGTTA
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
* *
1525505 CCA-CTGACTTGTGTGGGCTTT-AGAAGGGTTC
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
*
1525536 CCACC-GACTTGTGTGGGCTTT-TGAAGAGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAG-GGTTG
* * * *
1525568 CCACCA-ACTTTTGTGGACTTTGAGTAGGGTTG
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
* *
1525600 CCATC-GACTTGTGTGGGCTTTAGAGAAGAGTTG
1 CCACCAGACTTGTGTGGGCTTTA-AGAAGGGTTG
** * * *
1525633 CCA-TTGACATGTGTGGACTTTGAGAAGGG-TG
1 CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
* * *
1525664 CCACTA-ATTTGTGTGGACTTTA
1 CCACCAGACTTGTGTGGGCTTTA
1525686 GAAAAGGTTG
Statistics
Matches: 683, Mismatches: 91, Indels: 93
0.79 0.10 0.11
Matches are distributed among these distances:
30 5 0.01
31 121 0.18
32 485 0.71
33 68 0.10
34 4 0.01
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (33 bp):
CCACCAGACTTGTGTGGGCTTTAAGAAGGGTTG
Found at i:1525676 original size:64 final size:65
Alignment explanation
Indices: 1524845--1525692 Score: 844
Period size: 64 Copynumber: 13.3 Consensus size: 65
1524835 CACCAGCTTA
* * *
1524845 TGTGGGCTTTA-AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA-GGCTACCACTGACTT
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTT
1524908 G
65 G
* * * * * *
1524909 TGTCGGCTTTAGAGAA-GGTTGCCACTGACTTTTGTGAGCTTTTGA-AAAGGTTGCCACCAACTT
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGC-TTTGAGAAGGGTTGCCACCGACTT
1524972 G
65 G
* * * * ** * *
1524973 TATGGGCTTTAGAAAAGGGTTGCCACCGGCTTGTGTAGGCTTTGAGAAGGGTTGGTACCAACTTA
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTG
* * * * *
1525038 TGTGGGCTTT-GAGAAGGGTTGCCGCCAACTTGTATGGGCTTTGAAAAGGGTTGCCACTGACTTG
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTG
* * * * * **
1525102 TATGGGCTTTAG-CAA-GGTTACCACTGACTTGTGTGGGCTTT-AGAAAGGGTTACCGTCGACTT
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAG-AAGGGTTGCCACCGACTT
1525164 G
65 G
* * *
1525165 TGTGGGCTTTA-AAAAAGGTTGCCACCGACTTGTGTGGGCTTT-TGAAGAGGTTGCCACCGACTT
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAG-GGTTGCCACCGACTT
*
1525228 A
65 G
* * * *
1525229 TGTGGGCTTTAAAG-GGGGTTGCCATAC-ACTTGTGTGGGCTTT-AGATGGGGTTGCCACCGACT
1 TGTGGGCTTTAGAGAAGGGTTGCCA-CCGACTTGTGTGGGCTTTGAGA-AGGGTTGCCACCGACT
1525291 TG
64 TG
* * * *
1525293 TATGGGCTTTAGAGAA-GGTTGCCACCGACTTGTGTGGGCTTTTGA-AGGGGTTGCCATCAACTT
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGC-TTTGAGAAGGGTTGCCACCGACTT
1525356 G
65 G
* * *
1525357 TGTAGGCTTTA-AG-AGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGTTGCCACCAACTTG
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTG
** * *
1525420 TGTGGGCTTTAGAG-AGGGTTGCCATTGACTTGTGTGGGCTTTTA-AAGTGGTTGCCACCAACTT
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAG-GGTTGCCACCGACTT
1525483 G
65 G
* * *
1525484 TGTGGGCTTTA-AGAAGGGTTACCACTGACTTGTGTGGGCTTT-AGAAGGGTTCCCACCGACTTG
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTG
* * * * * *
1525547 TGTGGGCTTT--TGAAGAGGTTGCCACCAACTTTTGTGGACTTTGAGTAGGGTTGCCATCGACTT
1 TGTGGGCTTTAGAGAAG-GGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTT
1525610 G
65 G
* ** * * ** *
1525611 TGTGGGCTTTAGAGAAGAGTTGCCATTGACATGTGTGGACTTTGAGAAGGG-TGCCACTAATTTG
1 TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTG
* *
1525675 TGTGGACTTTAGAAAAGG
1 TGTGGGCTTTAGAGAAGG
1525693 TTGTCATGAA
Statistics
Matches: 652, Mismatches: 105, Indels: 54
0.80 0.13 0.07
Matches are distributed among these distances:
62 11 0.02
63 156 0.24
64 396 0.61
65 84 0.13
66 5 0.01
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (65 bp):
TGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTG
Found at i:1525678 original size:191 final size:194
Alignment explanation
Indices: 1524834--1525694 Score: 955
Period size: 191 Copynumber: 4.5 Consensus size: 194
1524824 GAAAAGAATT
* * *
1524834 CCACCAGCTTATGTGGGCTTTA-AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA-GGCT
1 CCACCAACTTATGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTT-GAGAAGGGTT
* * * * * * *
1524897 ACCACTGACTTGTGTCGGCTTTAGAGAAGGTTGCCACTGACTTTTGTGAGCTTTTGAAAAGGTTG
65 GCCACTGACTTGTGTGGGCTTTAGAGAAGGTTACCACTGACTTGTGTGGGCTTTAGAAAGGGTTG
* ** *
1524962 CCACCAACTTGTATGGGCTTTAGAAAAGGGTTGCCACCGGCTTGTGTAGGCTTTGAGAAGGGTTG
130 CCACCAACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGTTG
** ** * * *
1525027 GTACCAACTTATGTGGGCTTT-GAGAAGGGTTGCCGCCAACTTGTATGGGCTTTGAAAAGGGTTG
1 CCACCAACTTATGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTGAGAAGGGTTG
* * *
1525091 CCACTGACTTGTATGGGCTTTAG-CAAGGTTACCACTGACTTGTGTGGGCTTTAGAAAGGGTTAC
66 CCACTGACTTGTGTGGGCTTTAGAGAAGGTTACCACTGACTTGTGTGGGCTTTAGAAAGGGTTGC
** * * * *
1525155 CGTCGACTTGTGTGGGCTTTA-AAAAAGGTTGCCACCGACTTGTGTGGGCTTT-TGAAGAGGTTG
131 CACCAACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAG-GGTTG
* * * *
1525218 CCACCGACTTATGTGGGCTTTAAAG-GGGGTTGCCATAC-ACTTGTGTGGGCTTT-AGATGGGGT
1 CCACCAACTTATGTGGGCTTTAGAGAAGGGTTGCCAT-CGACTTGTGTGGGCTTTGAGA-AGGGT
* * * * * *
1525280 TGCCACCGACTTGTATGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCTTTTGAAGGGGTT
64 TGCCACTGACTTGTGTGGGCTTTAGAGAAGGTTACCACTGACTTGTGTGGGCTTTAGAAAGGGTT
* * *
1525345 GCCATCAACTTGTGTAGGCTTT--AAGAGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGTT
129 GCCACCAACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGTT
1525408 G
194 G
* * *
1525409 CCACCAACTTGTGTGGGCTTTAGAG-AGGGTTGCCATTGACTTGTGTGGGCTTTTA-AAGTGGTT
1 CCACCAACTTATGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTGAGAAG-GGTT
**
1525472 GCCACCAACTTGTGTGGGCTTTA-AGAAGGGTTACCACTGACTTGTGTGGGCTTTAG-AAGGGTT
65 GCCACTGACTTGTGTGGGCTTTAGAGAA-GGTTACCACTGACTTGTGTGGGCTTTAGAAAGGGTT
* * * * * * *
1525535 CCCACCGACTTGTGTGGGCTTTTGAAGA-GGTTGCCACCAACTTTTGTGGACTTTGAGTAGGGTT
129 GCCACCAACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGTT
1525599 G
194 G
* * * * * * *
1525600 CCATCGACTTGTGTGGGCTTTAGAGAAGAGTTGCCATTGACATGTGTGGACTTTGAGAAGGG-TG
1 CCACCAACTTATGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTGAGAAGGGTTG
* * * *
1525664 CCACTAATTTGTGTGGACTTTAGAAAAGGTT
66 CCACTGACTTGTGTGGGCTTTAGAGAAGGTT
1525695 GTCATGAAGT
Statistics
Matches: 572, Mismatches: 79, Indels: 36
0.83 0.11 0.05
Matches are distributed among these distances:
190 35 0.06
191 314 0.55
192 150 0.26
193 73 0.13
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (194 bp):
CCACCAACTTATGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTGAGAAGGGTTG
CCACTGACTTGTGTGGGCTTTAGAGAAGGTTACCACTGACTTGTGTGGGCTTTAGAAAGGGTTGC
CACCAACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGTTG
Found at i:1525747 original size:64 final size:60
Alignment explanation
Indices: 1525675--1525906 Score: 236
Period size: 64 Copynumber: 3.7 Consensus size: 60
1525665 CACTAATTTG
* * *
1525675 TGTGGACTTTAGAAAAGGTTGTCATGAAGTTGTGGACTTAAAAAGTAAAAAGGTGCCACAGAGT
1 TGTGGAC-TTA-AAAAGGGTGCCACGAAGTTGTGGACTT-AAAAG-AAAAAGGTGCCACAGAGT
* *
1525739 TGTAGACTTAAAAAGGAAAAGTGCCA-TAGAGTTGTGGACTTAAAAGAAAAAGGTGCCACAGAGT
1 TGTGGACTTAAAAAGG----GTGCCACGA-AGTTGTGGACTTAAAAGAAAAAGGTGCCACAGAGT
* * *
1525803 TGTGGACTT-AAAAGGGTGCCACGAAGTTGTGGAATTAAAAGGGAAAA-GTGCCACAAAGT
1 TGTGGACTTAAAAAGGGTGCCACGAAGTTGTGGACTTAAAA-GAAAAAGGTGCCACAGAGT
*
1525862 TGTGGACTTAAAAGAAAAAGGTGCCACGAAGTTGTGGACTTAAAA
1 TGTGGACTT---A-AAAAGGGTGCCACGAAGTTGTGGACTTAAAA
1525907 ATGGATGCCA
Statistics
Matches: 145, Mismatches: 11, Indels: 24
0.81 0.06 0.13
Matches are distributed among these distances:
59 41 0.28
60 6 0.04
62 6 0.04
63 9 0.06
64 61 0.42
65 6 0.04
66 16 0.11
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (60 bp):
TGTGGACTTAAAAAGGGTGCCACGAAGTTGTGGACTTAAAAGAAAAAGGTGCCACAGAGT
Found at i:1525770 original size:32 final size:33
Alignment explanation
Indices: 1525702--1525907 Score: 238
Period size: 32 Copynumber: 6.5 Consensus size: 33
1525692 GTTGTCATGA
1525702 AGTTGTGGACTTAAAAAGTAAAAAGGTGCCACAG
1 AGTTGTGGACTTAAAAAG-AAAAAGGTGCCACAG
* * *
1525736 AGTTGTAGACTTAAAAAGGAAAA-GTGCCATAG
1 AGTTGTGGACTTAAAAAGAAAAAGGTGCCACAG
1525768 AGTTGTGGACTT-AAAAGAAAAAGGTGCCACAG
1 AGTTGTGGACTTAAAAAGAAAAAGGTGCCACAG
1525800 AGTTGTGGACTT-AAAAG-----GGTGCCAC-G
1 AGTTGTGGACTTAAAAAGAAAAAGGTGCCACAG
* * * *
1525826 AAGTTGTGGAATTAAAAGGGAAAA-GTGCCACAA
1 -AGTTGTGGACTTAAAAAGAAAAAGGTGCCACAG
1525859 AGTTGTGGACTT-AAAAGAAAAAGGTGCCAC-G
1 AGTTGTGGACTTAAAAAGAAAAAGGTGCCACAG
1525890 AAGTTGTGGACTTAAAAA
1 -AGTTGTGGACTTAAAAA
1525908 TGGATGCCAT
Statistics
Matches: 147, Mismatches: 13, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
26 1 0.01
27 19 0.13
28 4 0.03
31 17 0.12
32 81 0.55
33 8 0.05
34 17 0.12
ACGTcount: A:0.40, C:0.11, G:0.28, T:0.21
Consensus pattern (33 bp):
AGTTGTGGACTTAAAAAGAAAAAGGTGCCACAG
Found at i:1525940 original size:91 final size:90
Alignment explanation
Indices: 1525722--1525942 Score: 293
Period size: 91 Copynumber: 2.4 Consensus size: 90
1525712 TTAAAAAGTA
* * * *
1525722 AAAAGG-TGCCACAGAGTTGTAGACTTAAAAAGGAAAAGTGCCATAGAGTTGTGGACTTAAAAGA
1 AAAAGGATGCCACGGAGTTGTGGACTT-AAAAGGAAAAGTGCCACAAAGTTGTGGACTTAAAAGA
1525786 AAAAGGTGCCACAGAGTTGTGGACTT
65 AAAAGGTGCCACAGAGTTGTGGACTT
* * *
1525812 AAAAGGGTGCCACGAAGTTGTGGAATTAAAAGGGAAAAGTGCCACAAAGTTGTGGACTTAAAAGA
1 AAAAGGATGCCACGGAGTTGTGGACTTAAAA-GGAAAAGTGCCACAAAGTTGTGGACTTAAAAGA
1525877 AAAAGGTGCCAC-GAAGTTGTGGACTT
65 AAAAGGTGCCACAG-AGTTGTGGACTT
* * *
1525903 AAAAATGGATGCCATGGAGTTGTGGACTTTAAAGAAAAAG
1 -AAAA-GGATGCCACGGAGTTGTGGACTTAAAAGGAAAAG
1525943 GATACTACTA
Statistics
Matches: 114, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
90 11 0.10
91 71 0.62
92 10 0.09
93 22 0.19
ACGTcount: A:0.39, C:0.11, G:0.29, T:0.21
Consensus pattern (90 bp):
AAAAGGATGCCACGGAGTTGTGGACTTAAAAGGAAAAGTGCCACAAAGTTGTGGACTTAAAAGAA
AAAGGTGCCACAGAGTTGTGGACTT
Found at i:1525962 original size:33 final size:32
Alignment explanation
Indices: 1525925--1526063 Score: 122
Period size: 33 Copynumber: 4.3 Consensus size: 32
1525915 CATGGAGTTG
*
1525925 TGGACTTTAAAGAAAAAGGATACTACTAAGTCA
1 TGGACTTTAAAGAAAAA-GATACCACTAAGTCA
* * * *
1525958 TGGACTTTGAAGAAAAAAAATGCCACTAAGTCG
1 TGGACTTTAAAG-AAAAAGATACCACTAAGTCA
** * *
1525991 TGGACTTTAAAGTAAAAAGA-GGCATTGAGTCA
1 TGGACTTTAAAG-AAAAAGATACCACTAAGTCA
* * *
1526023 TGGAC-TTAGAG-AAAAGATACCCCTAAATCA
1 TGGACTTTAAAGAAAAAGATACCACTAAGTCA
1526053 TGGACTTTAAA
1 TGGACTTTAAA
1526064 AGGTCACTTT
Statistics
Matches: 83, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
29 6 0.07
30 11 0.13
31 9 0.11
32 13 0.16
33 39 0.47
34 5 0.06
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (32 bp):
TGGACTTTAAAGAAAAAGATACCACTAAGTCA
Found at i:1533530 original size:20 final size:20
Alignment explanation
Indices: 1533505--1533621 Score: 117
Period size: 20 Copynumber: 5.7 Consensus size: 20
1533495 TTCAAACTAG
1533505 ATGTATCGATACATTGAACA
1 ATGTATCGATACATTGAACA
* *
1533525 ATGTATCGATACATCTAGGTAGA
1 ATGTATCGATACAT-T--GAACA
*
1533548 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAACA
* * * *
1533568 ATATATCGATACATTCATCC
1 ATGTATCGATACATTGAACA
* * *
1533588 ATGTATTGATACATTAAATA
1 ATGTATCGATACATTGAACA
1533608 ATGTATCGATACAT
1 ATGTATCGATACAT
1533622 CTTGGTAAAA
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
20 59 0.76
21 1 0.01
22 1 0.01
23 17 0.22
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGAACA
Found at i:1534504 original size:45 final size:49
Alignment explanation
Indices: 1534398--1534507 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 49
1534388 CCAATGTGTC
* *
1534398 GATTCAAGGCTAGCGACATTGGGCTAAAGGAAAAGTGGACCAATGTGCT
1 GATTCAAGGCCAGCGACATTGGGCTAAAGGAAAAGTGGACCAATATGCT
* *
1534447 GATTCAAGGCCAGCGACATTGGGCT-AA-TAAAGGT-G-CCAATATGCT
1 GATTCAAGGCCAGCGACATTGGGCTAAAGGAAAAGTGGACCAATATGCT
*
1534492 GATTCAATGCCAGCGA
1 GATTCAAGGCCAGCGA
1534508 TATCGGACTT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
45 24 0.43
46 1 0.02
47 5 0.09
48 2 0.04
49 24 0.43
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (49 bp):
GATTCAAGGCCAGCGACATTGGGCTAAAGGAAAAGTGGACCAATATGCT
Found at i:1534543 original size:53 final size:49
Alignment explanation
Indices: 1534480--1534609 Score: 170
Period size: 53 Copynumber: 2.6 Consensus size: 49
1534470 CTAATAAAGG
* *
1534480 TGCCAATATGCTGATTCAATGCCAGCGATATCGGACTTTAAAAATGTCGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATCAGAC-TTAAAAA--T-GAAGA
* * *
1534533 TGCCAATATGCTGAATCAAGGCCAGCGATATCAGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATCAGACTTAAAAATGAAGA
*
1534582 TGCCAATGTGCTGATTCAAGGCCAGCGA
1 TGCCAATATGCTGATTCAAGGCCAGCGA
1534610 CGTTGAAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
49 30 0.43
50 1 0.01
52 6 0.09
53 33 0.47
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATCAGACTTAAAAATGAAGA
Found at i:1534601 original size:49 final size:49
Alignment explanation
Indices: 1534473--1534817 Score: 253
Period size: 49 Copynumber: 6.7 Consensus size: 49
1534463 CATTGGGCTA
* * *
1534473 ATAAAGGTGCCAATATGCTGATTCAATGCCAGCGATATCGGACTTTAAAA
1 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCAGAC-TTAAAG
* * *
1534523 ATGTCGAAGATGCCAATATGCTGAATCAAGGCCAGCGATATCAGACTTAAAG
1 A--T-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCAGACTTAAAG
* * * *
1534575 ATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACGTTGAAATTAAAGA-TAAGAAGG
1 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA---T---A-T-CAGACTTA-AA-G
** ** ** *
1534633 ATGGTAAAGGTGCCAATATGCTGATTCAAGGTTAGTAATATTGGGCTTAAAG
1 A---TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCAGACTTAAAG
* * * * *
1534685 GTAAAGGTGCCAATGTGCTGATTCAAGTCCAGCGACA-CTAGGCTTAGGAATG
1 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATC-AGACTTA--AA-G
* * *
1534737 TTAAAGATGCCAATATGCTGATTCAAGGCTAGCGATATCAGACTTAAAG
1 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCAGACTTAAAG
*
1534786 ATAAAGGTGCCAATGTGCTGATTCAAGGCCAG
1 ATAAAGGTGCCAATATGCTGATTCAAGGCCAG
1534818 TGGTATTGGA
Statistics
Matches: 231, Mismatches: 42, Indels: 45
0.73 0.13 0.14
Matches are distributed among these distances:
49 94 0.41
50 4 0.02
51 2 0.01
52 47 0.20
53 40 0.17
54 3 0.01
55 2 0.01
56 3 0.01
57 5 0.02
58 3 0.01
61 28 0.12
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (49 bp):
ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCAGACTTAAAG
Found at i:1534851 original size:43 final size:43
Alignment explanation
Indices: 1534787--1535233 Score: 279
Period size: 43 Copynumber: 9.8 Consensus size: 43
1534777 GACTTAAAGA
*
1534787 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGTGGTATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGTGATATTGGACT
* * *
1534830 TAAAGGTGCCAATGTGTTGATTCAAGGCCCA-CGACATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGG-CCAGTGATATTGGACT
** * * * *
1534873 TAATGTTGACGAAAGCACCAATATGGTAATTCAAGGACAGTGATATTGGACT
1 TAA-----A-G---GTGCCAATGTGCTGATTCAAGGCCAGTGATATTGGACT
* * * * * *
1534925 TAAAAGTGACAATGTGCTGATTCAAGGGCAGTGGTATTGGGCA
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGTGATATTGGACT
** * *
1534968 TAAAGGTGCCAATGTATTGATTCAAGGCCCA-CGACATTGGACTT
1 TAAAGGTGCCAATGTGCTGATTCAAGG-CCAGTGATATTGGAC-T
* * *
1535012 AAAGATGACGAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACT
1 -----T-A--AAGGTGCCAATGTGCTGATTCAAGGCCAGTGATATTGGACT
* * *
1535063 TAAAAGTGCCAATGTGCTGATTCAAGGCTAGTGGTATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGTGATATTGGACT
* * *
1535106 TAAAGGTGCCAATGTGTTGATTCAAGGCCCA-CGACATTGGACAT
1 TAAAGGTGCCAATGTGCTGATTCAAGG-CCAGTGATATTGGAC-T
* * * * *
1535150 AAAGATGACGAAGGCGCCAATATGCTAATTCAAGGCTAGCGATATTGGACT
1 -----T-A--AAGGTGCCAATGTGCTGATTCAAGGCCAGTGATATTGGACT
* *
1535201 TAAAAGTGCCAATATGCTGATTCAAGGCCAGTG
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGTG
1535234 TCGTTGGGCT
Statistics
Matches: 310, Mismatches: 61, Indels: 66
0.71 0.14 0.15
Matches are distributed among these distances:
43 190 0.61
44 8 0.03
45 2 0.01
46 2 0.01
47 1 0.00
48 1 0.00
49 3 0.01
50 2 0.01
51 9 0.03
52 92 0.30
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (43 bp):
TAAAGGTGCCAATGTGCTGATTCAAGGCCAGTGATATTGGACT
Found at i:1534856 original size:21 final size:21
Alignment explanation
Indices: 1534789--1534856 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
1534779 CTTAAAGATA
*
1534789 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGTTGATTC
* * *
1534810 AA-G-GCCAGTGGTATTGGACTTA
1 AAGGTGCCAAT-GTGTT-GA-TTC
1534832 AAGGTGCCAATGTGTTGATTC
1 AAGGTGCCAATGTGTTGATTC
1534853 AAGG
1 AAGG
1534857 CCCACGACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 5 0.14
20 4 0.11
21 10 0.29
22 6 0.17
23 5 0.14
24 5 0.14
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (21 bp):
AAGGTGCCAATGTGTTGATTC
Found at i:1534989 original size:138 final size:137
Alignment explanation
Indices: 1534745--1535233 Score: 726
Period size: 138 Copynumber: 3.5 Consensus size: 137
1534735 TGTTAAAGAT
* **
1534745 GCCAATATGCTGATTCAAGGCTAGCGATATCAGACTTAAAGATAAAGGTGCCAATGTGCTGATTC
1 GCCAATATGCTAATTCAAGGC-AGCGATATTGGACTT----A-AAA-GTGCCAATGTGCTGATTC
1534810 AAGGCCAGTGGTATTGGACTTAAAGGTGCCAATGTGTTGATTCAAGGCCCACGACATTGGACTTA
59 AAGGCCAGTGGTATTGGACTTAAAGGTGCCAATGTGTTGATTCAAGGCCCACGACATTGGACTTA
* * *
1534875 ATGTTGACGAAAGC
124 AAGATGACGAAGGC
* * * * *
1534889 ACCAATATGGTAATTCAAGGACAGTGATATTGGACTTAAAAGTGACAATGTGCTGATTCAAGGGC
1 GCCAATATGCTAATTCAAGG-CAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCC
* * *
1534954 AGTGGTATTGGGCATAAAGGTGCCAATGTATTGATTCAAGGCCCACGACATTGGACTTAAAGATG
65 AGTGGTATTGGACTTAAAGGTGCCAATGTGTTGATTCAAGGCCCACGACATTGGACTTAAAGATG
*
1535019 ACGAAGGT
130 ACGAAGGC
*
1535027 GCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCT
1 GCCAATATGCTAATTCAAGG-CAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCC
*
1535092 AGTGGTATTGGACTTAAAGGTGCCAATGTGTTGATTCAAGGCCCACGACATTGGACATAAAGATG
65 AGTGGTATTGGACTTAAAGGTGCCAATGTGTTGATTCAAGGCCCACGACATTGGACTTAAAGATG
1535157 ACGAAGGC
130 ACGAAGGC
*
1535165 GCCAATATGCTAATTCAAGGCTAGCGATATTGGACTTAAAAGTGCCAATATGCTGATTCAAGGCC
1 GCCAATATGCTAATTCAAGGC-AGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCC
1535230 AGTG
65 AGTG
1535234 TCGTTGGGCT
Statistics
Matches: 314, Mismatches: 29, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
137 1 0.00
138 279 0.89
139 3 0.01
140 1 0.00
144 29 0.09
145 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (137 bp):
GCCAATATGCTAATTCAAGGCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCA
GTGGTATTGGACTTAAAGGTGCCAATGTGTTGATTCAAGGCCCACGACATTGGACTTAAAGATGA
CGAAGGC
Found at i:1535299 original size:33 final size:33
Alignment explanation
Indices: 1535254--1535520 Score: 232
Period size: 33 Copynumber: 8.4 Consensus size: 33
1535244 TAGAAGGAGA
*
1535254 TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTTGAAAAAGGT
* * *
1535287 TGCCATCGACTTGTGTGGGC-TTT--AGAAGGG
1 TGCCACCGACTTGTGTGGGCTTTTGAAAAAGGT
*
1535317 TGCCACCAACTTGTGTGGG-TTTTAGAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTT-GAAAAAGGT
* * * *
1535350 TGCCACTGACTTGTGTGGGC-TTTG--GAGGGG
1 TGCCACCGACTTGTGTGGGCTTTTGAAAAAGGT
* * *
1535380 TGCCACTC-ACTTATGTGGGCTTTAGAAAAATGT
1 TGCCAC-CGACTTGTGTGGGCTTTTGAAAAAGGT
* * *
1535413 TGCCACCGACTTGTGTAGGC-TTT--AGAAGGG
1 TGCCACCGACTTGTGTGGGCTTTTGAAAAAGGT
* * * **
1535443 TGCCACCGACTTGCGTAGGCATGAGAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTTGAAAAAGGT
* *
1535476 TGCCACCGACTTGTGTGGGCTTTAGAAAAATGT
1 TGCCACCGACTTGTGTGGGCTTTTGAAAAAGGT
*
1535509 TGCCACCAACTT
1 TGCCACCGACTT
1535521 ATGGGCTTTT
Statistics
Matches: 184, Mismatches: 37, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
30 68 0.37
31 4 0.02
32 7 0.04
33 105 0.57
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (33 bp):
TGCCACCGACTTGTGTGGGCTTTTGAAAAAGGT
Found at i:1535345 original size:63 final size:63
Alignment explanation
Indices: 1535238--1535502 Score: 363
Period size: 63 Copynumber: 4.2 Consensus size: 63
1535228 CCAGTGTCGT
* *
1535238 TGGGC-TTAGAAGGAGATGCCACCAACTTGTGTGGGCTTTTGAAAAAGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAAGG-G-TGCCACCAACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTG
* *
1535302 TGGGCTTTAGAAGGGTGCCACCAACTTGTGTGGGTTTTAGAAAAAGGTTGCCACTGACTTGTG
1 TGGGCTTTAGAAGGGTGCCACCAACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTG
* * * *
1535365 TGGGCTTTGGAGGGGTGCCACTC-ACTTATGTGGGCTTTAGAAAAATGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGGGTGCCAC-CAACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTG
* * * * * *
1535428 TAGGCTTTAGAAGGGTGCCACCGACTTGCGTAGGCATGAGAAAAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGGGTGCCACCAACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTG
1535491 TGGGCTTTAGAA
1 TGGGCTTTAGAA
1535503 AAATGTTGCC
Statistics
Matches: 178, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
62 1 0.01
63 162 0.91
64 7 0.04
65 8 0.04
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.28
Consensus pattern (63 bp):
TGGGCTTTAGAAGGGTGCCACCAACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTG
Found at i:1535418 original size:96 final size:94
Alignment explanation
Indices: 1535281--1535542 Score: 236
Period size: 96 Copynumber: 2.8 Consensus size: 94
1535271 GGCTTTTGAA
* * * * * * *
1535281 AAAGGTTGCCATCGACTTGTGTGGGCTTTAG---AAGGGTGCCACCAACTTGTGTGGGTTTTAGA
1 AAAGGGTGCCACCGACTTATGTGGGCTTTAGAAAAATGTTGCCACCAACTTGTGTAGGCTTTAG-
* * * * *
1535343 AAAAGGTTGCCACTGACTTGTGTGGGCTTTG-G
65 --AAGGGTGCCACCGACTTGCGTAGGC-ATGAG
* *
1535375 -AGGGGTGCCACTC-ACTTATGTGGGCTTTAGAAAAATGTTGCCACCGACTTGTGTAGGCTTTAG
1 AAAGGGTGCCAC-CGACTTATGTGGGCTTTAGAAAAATGTTGCCACCAACTTGTGTAGGCTTTAG
1535438 AAGGGTGCCACCGACTTGCGTAGGCATGAG
65 AAGGGTGCCACCGACTTGCGTAGGCATGAG
* * *
1535468 AAAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAATGTTGCCACCAACTTATG--GGCTTTT
1 --AAAGGGTGCCACCGACTTATGTGGGCTTTAGAAAAATGTTGCCACCAACTTGTGTAGGC-TTT
1535531 A-AAGGGTGCCAC
63 AGAAGGGTGCCAC
1535543 TAACTTGTGG
Statistics
Matches: 139, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
92 2 0.01
93 46 0.33
94 15 0.11
95 5 0.04
96 71 0.51
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (94 bp):
AAAGGGTGCCACCGACTTATGTGGGCTTTAGAAAAATGTTGCCACCAACTTGTGTAGGCTTTAGA
AGGGTGCCACCGACTTGCGTAGGCATGAG
Found at i:1535547 original size:28 final size:28
Alignment explanation
Indices: 1535509--1535646 Score: 125
Period size: 28 Copynumber: 4.9 Consensus size: 28
1535499 AGAAAAATGT
* * *
1535509 TGCCACCAACTTATGGGCTTTTAAAGGG
1 TGCCACTAACTTGTGGGCTTTGAAAGGG
1535537 TGCCACTAACTTGTGGGCTTTGAACA-GG
1 TGCCACTAACTTGTGGGCTTTGAA-AGGG
* ** *
1535565 TGCCACTGACTTGTGGTATTTGAAAGGA
1 TGCCACTAACTTGTGGGCTTTGAAAGGG
* *** * *
1535593 TGCCACTGACTTGTGCATTTTAAAAAGGA
1 TGCCACTAACTTGTGGGCTTT-GAAAGGG
*
1535622 TGCCACTGACTTGTGGGCTTTGAAA
1 TGCCACTAACTTGTGGGCTTTGAAA
1535647 ATAATGCCAC
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
27 1 0.01
28 66 0.72
29 25 0.27
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (28 bp):
TGCCACTAACTTGTGGGCTTTGAAAGGG
Found at i:1535629 original size:29 final size:27
Alignment explanation
Indices: 1535527--1535665 Score: 120
Period size: 29 Copynumber: 5.0 Consensus size: 27
1535517 ACTTATGGGC
* *
1535527 TTTT-AAAGGGTGCCACTAACTTGTGGG
1 TTTTAAAAGGATGCCACTGACTTGT-GG
* *
1535554 CTTTGAACAGG-TGCCACTGACTTGTGG
1 -TTTTAAAAGGATGCCACTGACTTGTGG
* *
1535581 TATTTGAAAGGATGCCACTGACTTGTGCA
1 T-TTTAAAAGGATGCCACTGACTTGTG-G
1535610 TTTTAAAAAGGATGCCACTGACTTGTGGG
1 TTTT-AAAAGGATGCCACTGACTTGT-GG
* **
1535639 CTTTGAAAATAATGCCACTGACTTGTG
1 -TTTTAAAAGGATGCCACTGACTTGTG
1535666 TGGGCTTCGA
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
26 1 0.01
27 8 0.09
28 35 0.38
29 44 0.48
30 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (27 bp):
TTTTAAAAGGATGCCACTGACTTGTGG
Found at i:1536124 original size:60 final size:60
Alignment explanation
Indices: 1536060--1536236 Score: 214
Period size: 60 Copynumber: 3.0 Consensus size: 60
1536050 AAAAGAAAAA
* * *
1536060 GGTGCCACAGAGTTATGGACTTTGAAAAGAAAAAGGTACCACAGAGTTATGGACTTAAAG
1 GGTGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGGTGCCACAGAGTTATGGACTTAAAG
* * * * *
1536120 GGTGCCACGGAGTTGTGGACTTTGAAAAGAAAAATGTGCCTCGGAGTTCTAGACTTAAAG
1 GGTGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGGTGCCACAGAGTTATGGACTTAAAG
* ** * * *
1536180 GGTGCCATGGAGTTGTGGAC-TT-AAAAGGGAAAGGTGCCATAGATTTATGGGCTTAAA
1 GGTGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGGTGCCACAGAGTTATGGACTTAAA
1536237 AGAAAGATGG
Statistics
Matches: 98, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
58 25 0.26
59 2 0.02
60 71 0.72
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.24
Consensus pattern (60 bp):
GGTGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGGTGCCACAGAGTTATGGACTTAAAG
Found at i:1536132 original size:26 final size:26
Alignment explanation
Indices: 1536098--1536204 Score: 79
Period size: 26 Copynumber: 3.8 Consensus size: 26
1536088 GAAAAAGGTA
* *
1536098 CCACAGAGTTATGGACTTAAAGGGTG
1 CCACGGAGTTGTGGACTTAAAGGGTG
*
1536124 CCACGGAGTTGTGGACTTTGAAAAGAAAAATGTG
1 CCACGGAGTTGTGGAC-TT--AAAG-----GGTG
* * *
1536158 CCTCGGAGTTCTAGACTTAAAGGGTG
1 CCACGGAGTTGTGGACTTAAAGGGTG
*
1536184 CCATGGAGTTGTGGACTTAAA
1 CCACGGAGTTGTGGACTTAAA
1536205 AGGGAAAGGT
Statistics
Matches: 62, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
26 34 0.55
27 2 0.03
29 4 0.06
31 4 0.06
33 2 0.03
34 16 0.26
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (26 bp):
CCACGGAGTTGTGGACTTAAAGGGTG
Found at i:1536218 original size:32 final size:33
Alignment explanation
Indices: 1536180--1536274 Score: 106
Period size: 32 Copynumber: 2.9 Consensus size: 33
1536170 AGACTTAAAG
*
1536180 GGTGCCATGGAGTTGTGGACTTAAAAGGGAA-A-
1 GGTGCCATGGAGTTGTGGACTTAAAA-GAAAGAT
* * * *
1536212 GGTGCCATAGATTTATGGGCTTAAAAGAAAGAT
1 GGTGCCATGGAGTTGTGGACTTAAAAGAAAGAT
*
1536245 GGTGCCACGGAGTTGTGGACTTAAAA-AAAG
1 GGTGCCATGGAGTTGTGGACTTAAAAGAAAG
1536275 GTGCCACAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
31 3 0.06
32 27 0.53
33 21 0.41
ACGTcount: A:0.34, C:0.11, G:0.33, T:0.23
Consensus pattern (33 bp):
GGTGCCATGGAGTTGTGGACTTAAAAGAAAGAT
Found at i:1536259 original size:65 final size:62
Alignment explanation
Indices: 1536180--1536319 Score: 174
Period size: 62 Copynumber: 2.2 Consensus size: 62
1536170 AGACTTAAAG
* * * *
1536180 GGTGCCATGGAGTTGTGGACTTAAAAGGGAAAGGTGCCATAGATTTATGGGC-TTAAAAGAAAGA
1 GGTGCCACGGAGTTGTGGACTTAAAA---AAAGGTGCCACAAAGTTATGGGCTTTAAAAGAAA-A
1536244 T
62 T
* *
1536245 GGTGCCACGGAGTTGTGGACTTAAAAAAAGGTGCCACAAAGTTGTGGGCTTTAAAAGGAAAT
1 GGTGCCACGGAGTTGTGGACTTAAAAAAAGGTGCCACAAAGTTATGGGCTTTAAAAGAAAAT
*
1536307 GATGCCACGGAGT
1 GGTGCCACGGAGT
1536320 GTCTTAAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
62 33 0.49
63 9 0.13
65 25 0.37
ACGTcount: A:0.33, C:0.12, G:0.32, T:0.23
Consensus pattern (62 bp):
GGTGCCACGGAGTTGTGGACTTAAAAAAAGGTGCCACAAAGTTATGGGCTTTAAAAGAAAAT
Found at i:1536268 original size:33 final size:31
Alignment explanation
Indices: 1535818--1536319 Score: 228
Period size: 34 Copynumber: 16.3 Consensus size: 31
1535808 AAAGAGGGTT
* *
1535818 CCACGGAGCTGTGGACTTAAAAG----GGAG
1 CCACGGAGTTGTGGACTTAAAAGAAAAGGTG
* * **
1535845 CCACAGAGTTGTAGACTTAAAAGGAAAAGACG
1 CCACGGAGTTGTGGACTTAAAA-GAAAAGGTG
**
1535877 CCACGGAGTTGTGGA-TT--TTGAAAAGGTG
1 CCACGGAGTTGTGGACTTAAAAGAAAAGGTG
* * **
1535905 CCATGGAGTTGTGGACTTTGAGAAGAAAAATTTG
1 CCACGGAGTTGTGGAC-TT-AAAAG-AAAAGGTG
* *
1535939 CCATGGAGTTGTGGACAT-AAAG----GGTG
1 CCACGGAGTTGTGGACTTAAAAGAAAAGGTG
* * **
1535965 CCATGGAGTTGTGGACTTAAAAGGGAAAGGCA
1 CCACGGAGTTGTGGACTTAAAA-GAAAAGGTG
* * *
1535997 TCAC-GAGTTATAGG-CTTTGAAAAGAAAAAAGTG
1 CCACGGAGTTGT-GGAC-TT-AAAAG-AAAAGGTG
*
1536030 CCACGGAGTTATGGACTTCAAAAAGAAAAAGGTG
1 CCACGGAGTTGTGGACTT--AAAAG-AAAAGGTG
* * *
1536064 CCACAGAGTTATGGACTTTGAAAAGAAAAAGGTA
1 CCACGGAGTTGTGGAC-TT-AAAAG-AAAAGGTG
* *
1536098 CCACAGAGTTATGGACTT-AAAG----GGTG
1 CCACGGAGTTGTGGACTTAAAAGAAAAGGTG
*
1536124 CCACGGAGTTGTGGACTTTGAAAAGAAAAATGTG
1 CCACGGAGTTGTGGAC-TT-AAAAG-AAAAGGTG
* * *
1536158 CCTCGGAGTTCTAGACTT-AAAG----GGTG
1 CCACGGAGTTGTGGACTTAAAAGAAAAGGTG
* *
1536184 CCATGGAGTTGTGGACTTAAAAGGGAAAGGTG
1 CCACGGAGTTGTGGACTTAAAA-GAAAAGGTG
** * * *
1536216 CCATAGATTTATGGGCTTAAAAGAAAGATGGTG
1 CCACGGAGTTGTGGACTTAAAAGAAA-A-GGTG
1536249 CCACGGAGTTGTGGACTT-AAA-AAAAGGTG
1 CCACGGAGTTGTGGACTTAAAAGAAAAGGTG
** * * *
1536278 CCACAAAGTTGTGGGCTTTAAAAGGAAATGATG
1 CCACGGAGTTGTGGAC-TTAAAA-GAAAAGGTG
1536311 CCACGGAGT
1 CCACGGAGT
1536320 GTCTTAAAAA
Statistics
Matches: 365, Mismatches: 65, Indels: 84
0.71 0.13 0.16
Matches are distributed among these distances:
26 53 0.15
27 27 0.07
28 24 0.07
29 21 0.06
30 5 0.01
31 29 0.08
32 50 0.14
33 51 0.14
34 103 0.28
35 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.22
Consensus pattern (31 bp):
CCACGGAGTTGTGGACTTAAAAGAAAAGGTG
Found at i:1543065 original size:155 final size:156
Alignment explanation
Indices: 1542746--1543435 Score: 662
Period size: 155 Copynumber: 4.4 Consensus size: 156
1542736 TGCTTGATGC
* * * *
1542746 CCCTAAAGGACTTAAAAAGGATTATAGATGGGTGTGAAACTATTCTAAATACCCATCTTCGGCAT
1 CCCTAAAGGACTTAAAAA-GATTATAGATGGG-ATGAACCTATCCTAAATACCCATCTTCAGCAT
* * * * * **
1542811 GAAAGC-GTACCCGTTGACAACTTAGGACTTGGTT-TCAAAAATTATGAAAATGCCTTTACGAGT
64 AAAAGCAG-ACCCGGTGACAACCTAGGACTTGGTTCTAAAAAATTATGAAAATACCCCTACGAGT
* * * * *
1542874 ATACCTTCAATGTAAAAATATCCCGGTAA
128 ATACCTTCGACGTAAAAGTATTCCAGTAA
* * * * *
1542903 CCCTAAAAGACTTAAAAAGAATAGAGATGGGATGAACCTATCCTAAATGCCC-TCTTCGGCATAA
1 CCCTAAAGGACTTAAAAAGATTATAGATGGGATGAACCTATCCTAAATACCCATCTTCAGCATAA
*** ** *
1542967 AAGCAGACCCGGTGACAACCTAGGACTCAATTCTAGGAAATTATGAAAATGCCCCTATCG-GTAT
66 AAGCAGACCCGGTGACAACCTAGGACTTGGTTCTAAAAAATTATGAAAATACCCCTA-CGAGTAT
* * *
1543031 ACTTTTGACGTGAAAGTATTCCAGTAA
130 ACCTTCGACGTAAAAGTATTCCAGTAA
* * * * * * * *
1543058 CCTTAAAAGACTTAAAAA-ATTTTTA-ATTGGGATGAACCTACCCTAAATATCAACCTTTAGCAT
1 CCCTAAAGGACTTAAAAAGA-TTATAGA-TGGGATGAACCTATCCTAAATACCCATCTTCAGCAT
* * * ** *
1543121 AAAAGCGGACTCGGTGACAACCTAGGAGTTGGTTCTAAAAAATTACAAAAATACCCCTAAGAG-A
64 AAAAGCAGACCCGGTGACAACCTAGGACTTGGTTCTAAAAAATTATGAAAATACCCCTACGAGTA
* ** *
1543185 TACCTTCGACGTAAAAGCATTTGA-TAC
129 TACCTTCGACGTAAAAGTATTCCAGTAA
* *
1543212 CCCTAAAGGACTTAAAAGGAATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCAGCATA
1 CCCTAAAGGACTTAAAAAG-ATTATAGATGGGATGAACCTATCCTAAATACCCATCTTCAGCATA
* * * * * *
1543277 AAAGCAGACCCGCTGACGACCTAGGA-ATGGTTCTAAAAAATTATCAAAATACCCCTATGGGTAT
65 AAAGCAGACCCGGTGACAACCTAGGACTTGGTTCTAAAAAATTATGAAAATACCCCTACGAGTAT
* *
1543341 ACCTTCGACGTAAAAGTA-TCCTAATAT
130 ACCTTCGACGTAAAAGTATTCC-AGTAA
* * * * *
1543368 CCCTAAAGGACTTAAAAAGGATTATAGAAGGGATGAACCTATCCTAAATATCTACCTTCGGCATA
1 CCCTAAAGGACTTAAAAA-GATTATAGATGGGATGAACCTATCCTAAATACCCATCTTCAGCATA
1543433 AAA
65 AAA
1543436 ATGGACCCGA
Statistics
Matches: 437, Mismatches: 82, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
154 86 0.20
155 199 0.46
156 134 0.31
157 18 0.04
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (156 bp):
CCCTAAAGGACTTAAAAAGATTATAGATGGGATGAACCTATCCTAAATACCCATCTTCAGCATAA
AAGCAGACCCGGTGACAACCTAGGACTTGGTTCTAAAAAATTATGAAAATACCCCTACGAGTATA
CCTTCGACGTAAAAGTATTCCAGTAA
Found at i:1543178 original size:156 final size:152
Alignment explanation
Indices: 1542746--1543514 Score: 563
Period size: 155 Copynumber: 4.9 Consensus size: 152
1542736 TGCTTGATGC
* * * * * * *
1542746 CCCTAAAGGACTTAAAAAGGATTATAGATGGGTGTGAAACTATTCTAAATACCCATCTTCGGCAT
1 CCCTAAAGGACTTAAAAA--ATTATAGATGGG-ATGAACCTATCCTAAATATCAACCTTCAGCAT
* * * * * * *
1542811 GAAAGC-GTACCCGTTGACAACTTAGGACTTGGTT-TCAAAAATTATGAAAAT--GCCTTTACGA
63 AAAAGCAG-ACCCGGTGACAACCTAGGA-TTGGTTCTAAAAAATTA-CAAAATACCCCTATA-G-
* * * * *
1542872 GTATACCTTCAATGTAAAAATATCCCGGTAA
123 GTATACCTTCGACGTAAAAGTATTCC-ATAA
* * * * * *
1542903 CCCTAAAAGACTTAAAAAGAATAGAGATGGGATGAACCTATCCTAAAT-GC-CCTCTTCGGCATA
1 CCCTAAAGGACTTAAAAA-ATTATAGATGGGATGAACCTATCCTAAATATCAAC-CTTCAGCATA
*** ** * * *
1542966 AAAGCAGACCCGGTGACAACCTAGGACTCAATTCTAGGAAATTATGAAAATGCCCCTATCGGTAT
64 AAAGCAGACCCGGTGACAACCTAGGA-TTGGTTCTAAAAAATTA-CAAAATACCCCTATAGGTAT
* * *
1543031 ACTTTTGACGTGAAAGTATTCCAGTAA
127 ACCTTCGACGTAAAAGTATTCCA-TAA
* * * * *
1543058 CCTTAAAAGACTTAAAAAATTTTTA-ATTGGGATGAACCTACCCTAAATATCAACCTTTAGCATA
1 CCCTAAAGGACTTAAAAAA-TTATAGA-TGGGATGAACCTATCCTAAATATCAACCTTCAGCATA
* *
1543122 AAAGCGGACTCGGTGACAACCTAGGAGTTGGTTCTAAAAAATTACAAAAATACCCCTA-AGAG-A
64 AAAGCAGACCCGGTGACAACCTAGGA-TTGGTTCTAAAAAATTAC-AAAATACCCCTATAG-GTA
* ** *
1543185 TACCTTCGACGTAAAAGCATTTGATAC
126 TACCTTCGACGTAAAAGTATTCCATAA
* *
1543212 CCCTAAAGGACTTAAAAGGAATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCAGCATA
1 CCCTAAAGGACTTAAAA--AATTATAGATGGGATGAACCTATCCTAAATATCAACCTTCAGCATA
* * * *
1543277 AAAGCAGACCCGCTGACGACCTAGGAATGGTTCTAAAAAATTATCAAAATACCCCTATGGGTATA
64 AAAGCAGACCCGGTGACAACCTAGGATTGGTTCTAAAAAATTA-CAAAATACCCCTATAGGTATA
*
1543342 CCTTCGACGTAAAAGTA-TCCTAATAT
128 CCTTCGACGTAAAAGTATTCC--ATAA
* * *
1543368 CCCTAAAGGACTTAAAAAGGATTATAGAAGGGATGAACCTATCCTAAATATCTACCTTCGGCATA
1 CCCTAAAGGACTTAAAAA--ATTATAGATGGGATGAACCTATCCTAAATATCAACCTTCAGCATA
*** ** ** ** * * *
1543433 AAAATGGACCCGACGATGATGTAAGAGTTGGTTTTATAAAATTACCAAAATACCCCTA-AGAG-A
64 AAAGCAGACCCGGTGACAACCTAGGA-TTGGTTCTAAAAAATTA-CAAAATACCCCTATAG-GTA
*
1543496 TACCTTCGACATAAAAGTA
126 TACCTTCGACGTAAAAGTA
1543515 CCTGATACCT
Statistics
Matches: 496, Mismatches: 92, Indels: 49
0.78 0.14 0.08
Matches are distributed among these distances:
154 86 0.17
155 190 0.38
156 170 0.34
157 50 0.10
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (152 bp):
CCCTAAAGGACTTAAAAAATTATAGATGGGATGAACCTATCCTAAATATCAACCTTCAGCATAAA
AGCAGACCCGGTGACAACCTAGGATTGGTTCTAAAAAATTACAAAATACCCCTATAGGTATACCT
TCGACGTAAAAGTATTCCATAA
Found at i:1543463 original size:311 final size:309
Alignment explanation
Indices: 1542903--1543512 Score: 751
Period size: 311 Copynumber: 2.0 Consensus size: 309
1542893 ATCCCGGTAA
* * *
1542903 CCCTAAAAGACTTAAAAAGAATAGAGATGGGATGAACCTATCCTAAATGCCCTCTTCGGCATAAA
1 CCCTAAAAGACTTAAAAAGAATAGAGATGGGATGAACCTATCCTAAATACCCCCTTCAGCATAAA
* * ** * *
1542968 AGCAGACCCGGTGACAACCTAGGACTCAATTCTAGGAAATTATGAAAATGCCCCTATCGGTATAC
66 AGCAGACCCGCTGACAACCTAGGAATCAATTCTAAAAAATTATCAAAATACCCCTATCGGTATAC
* * * * * * *
1543033 TTTTGACGTGAAAGTATTCCAGTAACCTTAAAAGACTTAAAAAATTTTTAATTGGGATGAACCTA
131 CTTCGACGTAAAAGTATTCCAATAACCCTAAAAGACTTAAAAAATTTATAATAGGGATGAACCTA
* * * ** *
1543098 CCCTAAATATCAACCTTTAGCATAAAAGCGGACTCGGTGACAACCTAGGAGTTGGTTCTAAAAAA
196 CCCTAAATATCAACCTTCAGCATAAAAACGGACCCGACGACAACCTAAGAGTTGGTTCTAAAAAA
*
1543163 TTACAAAAATACCCCTAAGAGATACCTTCGACGTAAAAGCATTTGATAC
261 TTACAAAAATACCCCTAAGAGATACCTTCGACATAAAAGCATTTGATAC
* * *
1543212 CCCTAAAGGACTTAAAAGGAATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCAGCATA
1 CCCTAAAAGACTTAAAAAGAA-TAGAGATGGGATGAACCTATCCTAAATACCC-CCTTCAGCATA
* ** *
1543277 AAAGCAGACCCGCTGACGACCTAGGAAT-GGTTCTAAAAAATTATCAAAATACCCCTATGGGTAT
64 AAAGCAGACCCGCTGACAACCTAGGAATCAATTCTAAAAAATTATCAAAATACCCCTATCGGTAT
* *
1543341 ACCTTCGACGTAAAAGTA-TCCTAATATCCCTAAAGGACTTAAAAAGGA-TTATAGA-AGGGATG
129 ACCTTCGACGTAAAAGTATTCC-AATAACCCTAAAAGACTTAAAAA--ATTTATA-ATAGGGATG
* * * * ** ** *
1543403 AACCTATCCTAAATATCTACCTTCGGCATAAAAATGGACCCGACGATGATGTAAGAGTTGGTTTT
190 AACCTACCCTAAATATCAACCTTCAGCATAAAAACGGACCCGACGACAACCTAAGAGTTGGTTCT
* *
1543468 ATAAAATTACCAAAATACCCCTAAGAGATACCTTCGACATAAAAG
255 AAAAAATTACAAAAATACCCCTAAGAGATACCTTCGACATAAAAG
1543513 TACCTGATAC
Statistics
Matches: 252, Mismatches: 43, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
309 22 0.09
310 92 0.37
311 136 0.54
312 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.24
Consensus pattern (309 bp):
CCCTAAAAGACTTAAAAAGAATAGAGATGGGATGAACCTATCCTAAATACCCCCTTCAGCATAAA
AGCAGACCCGCTGACAACCTAGGAATCAATTCTAAAAAATTATCAAAATACCCCTATCGGTATAC
CTTCGACGTAAAAGTATTCCAATAACCCTAAAAGACTTAAAAAATTTATAATAGGGATGAACCTA
CCCTAAATATCAACCTTCAGCATAAAAACGGACCCGACGACAACCTAAGAGTTGGTTCTAAAAAA
TTACAAAAATACCCCTAAGAGATACCTTCGACATAAAAGCATTTGATAC
Found at i:1543540 original size:156 final size:156
Alignment explanation
Indices: 1543086--1543540 Score: 440
Period size: 156 Copynumber: 2.9 Consensus size: 156
1543076 ATTTTTAATT
* * * * * * * * * *
1543086 GGGATGAACCTACCCTAAATATCAACCTTTAGCATAAAAGCGGACTCGGTGACAACCTAGGAGTT
1 GGGATGAACCTATCCTAAATACCCACCTTCAGCATAAAAACAGACCCGCTGACGACCTAAGAGTT
* * **
1543151 GGTTCTAAAAAATTACAAAAATACCCCTAAGAGATACCTTCGACGTAAAAGCATTTGATACCCCT
66 GGTTCTAAAAAATTACCAAAATACCCCTAAGAGATACCTTCGACGTAAAAGTACCTGATA--CCT
* * *
1543216 AAAGG---ACTTAAAAGGAATTATAGAT
129 ATAGGAACACTAAAAAGGAATTATAGAA
* * *
1543241 GGGATGAACCTATCCTAAATACCCACCTTCAGCATAAAAGCAGACCCGCTGACGACCTAGGA-AT
1 GGGATGAACCTATCCTAAATACCCACCTTCAGCATAAAAACAGACCCGCTGACGACCTAAGAGTT
* * * *
1543305 GGTTCTAAAAAATTATCAAAATACCCCTATGGGTATACCTTCGACGTAAAAGTATCCTAATATCC
66 GGTTCTAAAAAATTACCAAAATACCCCTAAGAG-ATACCTTCGACGTAAAAGTA-CCTGATA--C
* *
1543370 CTAAAGG-AC-TTAAAAAGG-ATTATAGAA
127 CTATAGGAACACTAAAAAGGAATTATAGAA
* * * ** * **
1543397 GGGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAATGGACCCGAC-GATGATGTAAGAGT
1 GGGATGAACCTATCCTAAATACCCACCTTCAGCATAAAAACAGACCCG-CTGACGACCTAAGAGT
* * * *
1543461 TGGTTTTATAAAATTACCAAAATACCCCTAAGAGATACCTTCGACATAAAAGTACCTGATACCTT
65 TGGTTCTAAAAAATTACCAAAATACCCCTAAGAGATACCTTCGACGTAAAAGTACCTGATACCTA
1543526 TAGTGAACACTAAAA
130 TAG-GAACACTAAAA
1543541 TGACAAGTAA
Statistics
Matches: 249, Mismatches: 42, Indels: 17
0.81 0.14 0.06
Matches are distributed among these distances:
153 5 0.02
154 31 0.12
155 81 0.33
156 95 0.38
157 37 0.15
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (156 bp):
GGGATGAACCTATCCTAAATACCCACCTTCAGCATAAAAACAGACCCGCTGACGACCTAAGAGTT
GGTTCTAAAAAATTACCAAAATACCCCTAAGAGATACCTTCGACGTAAAAGTACCTGATACCTAT
AGGAACACTAAAAAGGAATTATAGAA
Found at i:1545735 original size:166 final size:162
Alignment explanation
Indices: 1545540--1546070 Score: 530
Period size: 166 Copynumber: 3.2 Consensus size: 162
1545530 TATTAGGTAC
** * * *
1545540 ATTTTAAAAATTTTAAACCAA-AGAAAATCCCCCC-AGAAATATTTATGGAATAGAAAACACGGT
1 ATTTTAAAAATTAAAAACCAAGA-AAAATCCCCCCGA-AAAAATTTACGGAATAGAAAATAC-GT
* * **
1545603 TTTTCAAGAAAAGGAGAATTTCAAAGAAAAAATCCAAAACTTATGAAAATAAATTAATTTTAAAA
63 ATTTC-AGAAAA-GAGAATTTCAAAGAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTGAA
* * *
1545668 AACTGTTTTAAGT-TAAATTAAATAATAATATTTTATGA
126 AATTG-TTTAA-TATAAATTAAATAATAATATTTGATAA
* * * *
1545706 ATTTTAAAAATTAAAAACTAAGAAAAATCCTCCCGAAAAAATTTACGGAGTAGAAAATTTCGTAT
1 ATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCGAAAAAATTTACGGAATAGAAAA-TACGTAT
* * * * * *
1545771 TTCAGAAACAAGACAATTTCAAGGAAAAAATTCAAAGACTCATGAAGATGAATAAATTTTTGAAA
65 TTCAG-AA-AAGAGAATTTCAAAGAAAAAATCCAAA-ACTTATGAAAATGAATTAATTTTTGAAA
* * * * *
1545836 ATTGAATAAATGTGAGTTAAATAATAATATTTGATAA
127 ATTG-TTTAATATAAATTAAATAATAATATTTGATAA
* * *** *
1545873 ATTTTAAACATTCAAAACCAAGAAAAATCCTTTCGAAAAAATTTACGGTATAGAAAATATCGTAT
1 ATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCGAAAAAATTTACGGAATAGAAAATA-CGTAT
* *
1545938 TTCAGAAAAGAGGAATTTCAAAGAAAAAATTCAAAAATTTATGAAAATGAATTAATTTTTGAAAA
65 TTCAGAAAAGA-GAATTTCAAAGAAAAAA-TCCAAAACTTATGAAAATGAATTAATTTTTGAAAA
* *
1546003 TTGGTTTAATATGAAA-TAAATAATGATGTTTGATAA
128 TT-GTTTAATAT-AAATTAAATAATAATATTTGATAA
* *
1546039 ATTTTAAAAATTGAAAACTAAGAAAAATCCCC
1 ATTTTAAAAATTAAAAACCAAGAAAAATCCCC
1546071 GAAAATGAAT
Statistics
Matches: 298, Mismatches: 55, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
165 6 0.02
166 172 0.58
167 120 0.40
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.30
Consensus pattern (162 bp):
ATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCGAAAAAATTTACGGAATAGAAAATACGTATT
TCAGAAAAGAGAATTTCAAAGAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTGAAAATTG
TTTAATATAAATTAAATAATAATATTTGATAA
Found at i:1546160 original size:91 final size:91
Alignment explanation
Indices: 1545980--1546161 Score: 301
Period size: 91 Copynumber: 2.0 Consensus size: 91
1545970 AAAAATTTAT
* * * *
1545980 GAAAATGAATTAATTTTTGAAAATTGGTTTAATATGAAATAAATAATGATGTTTGATAAATTTTA
1 GAAAATGAATTAACTTTTGAAAACTGATTTAATATAAAATAAATAATGATGTTTGATAAATTTTA
1546045 AAAATTGAAAACTAAGAAAAATCCCC
66 AAAATTGAAAACTAAGAAAAATCCCC
* *
1546071 GAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAATAAATAATGATGTTTGATGAATTTTA
1 GAAAATGAATTAACTTTTGAAAACTGATTTAATATAAAATAAATAATGATGTTTGATAAATTTTA
*
1546136 AAAATTGAAAACTGAGAAAAATCCCC
66 AAAATTGAAAACTAAGAAAAATCCCC
1546162 TTAGAAAAAT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 84 1.00
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.34
Consensus pattern (91 bp):
GAAAATGAATTAACTTTTGAAAACTGATTTAATATAAAATAAATAATGATGTTTGATAAATTTTA
AAAATTGAAAACTAAGAAAAATCCCC
Found at i:1546256 original size:167 final size:166
Alignment explanation
Indices: 1546071--1546467 Score: 575
Period size: 167 Copynumber: 2.4 Consensus size: 166
1546061 AAAAATCCCC
1546071 GAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAATAAATAATGATGTTTGATGAATTTTA
1 GAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAATAAATAATGATGTTTGATGAATTTTA
* * *
1546136 AAAATTGAAAACTGAGAAAAATCCCCTTAG-AAAAATTTGCGGAGTAGAAAACA-CTATATTTCA
66 AAAATTAAAAACTGAGAAAAATCCCC-TAGAAAAAATTTACGAAGTAGAAAACATC-ATATTTC-
1546199 AAAAAAAAGAGAATTTCAAG-AAAAAATAAAAAAGCTCAT
128 AAAAAAAAGAGAATTTCAAGAAAAAAATAAAAAA-CTCAT
1546238 GAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAATAAATAATGATGTTTGATGAATTTTA
1 GAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAATAAATAATGATGTTTGATGAATTTTA
* * * * **
1546303 AAAATTAAAAACTGAGAAAAATCCTCTCGAAAAAATTTATGAAGTAGAAAACATCGTATTTCGTA
66 AAAATTAAAAACTGAGAAAAATCCCCTAGAAAAAATTTACGAAGTAGAAAACATCATATTTCAAA
*
1546368 AAAATGAGAATTTCAAGAAAAAAATAAAAAACTCAT
131 AAAAAGAGAATTTCAAGAAAAAAATAAAAAACTCAT
* * * * * * * *
1546404 GAAAATGAATTAATTTTTGAAAACTAAATTAATATGAAATAAATGATAATATTTGATGAATTTT
1 GAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAATAAATAATGATGTTTGATGAATTTT
1546468 GATGTTTGAA
Statistics
Matches: 209, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
166 80 0.38
167 128 0.61
168 1 0.00
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.31
Consensus pattern (166 bp):
GAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAATAAATAATGATGTTTGATGAATTTTA
AAAATTAAAAACTGAGAAAAATCCCCTAGAAAAAATTTACGAAGTAGAAAACATCATATTTCAAA
AAAAAGAGAATTTCAAGAAAAAAATAAAAAACTCAT
Found at i:1546302 original size:258 final size:259
Alignment explanation
Indices: 1545853--1546335 Score: 638
Period size: 258 Copynumber: 1.9 Consensus size: 259
1545843 AAATGTGAGT
* * *
1545853 TAAATAATAATATTTGATAAATTTTAAACATTCAAAACCAAGAAAAATCCTTTCGAAAAAATTTA
1 TAAATAATAATATTTGATAAATTTTAAAAATTCAAAACCAAGAAAAATCCCTTAGAAAAAATTTA
* * * * * * *
1545918 CGGTATAGAAAATATCGTATTTCAGAAAAGAGGAATTTCAAAGAAAAAATTCAAAAATTTATGAA
66 CGGTATAGAAAACATCATATTTCAAAAAAAAGGAATTTCAAAGAAAAAATTAAAAAACTCATGAA
* * * *
1545983 AATGAATTAATTTTTGAAAATTGGTTTAATATGAAATAAATAATGATGTTTGATAAATTTTAAAA
131 AATGAATTAACTTTTGAAAACTGATTTAATATAAAATAAATAATGATGTTTGATAAATTTTAAAA
*
1546048 ATTGAAAACTAAGAAAAATCC-C-CGAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAA
196 ATTAAAAACTAAGAAAAATCCTCTCGAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAA
* * * * **
1546110 TAAATAATGATGTTTGATGAATTTTAAAAATTGAAAACTGAGAAAAATCCCCTTAG-AAAAATTT
1 TAAATAATAATATTTGATAAATTTTAAAAATTCAAAACCAAGAAAAAT-CCCTTAGAAAAAATTT
*
1546174 GCGG-AGTAGAAAACA-CTATATTTCAAAAAAAAAGAGAATTTC-AAGAAAAAA-TAAAAAAGCT
65 ACGGTA-TAGAAAACATC-ATATTTC-AAAAAAAAG-GAATTTCAAAGAAAAAATTAAAAAA-CT
* *
1546235 CATGAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAATAAATAATGATGTTTGATGAATT
125 CATGAAAATGAATTAACTTTTGAAAACTGATTTAATATAAAATAAATAATGATGTTTGATAAATT
*
1546300 TTAAAAATTAAAAACTGAGAAAAATCCTCTCGAAAA
190 TTAAAAATTAAAAACTAAGAAAAATCCTCTCGAAAA
1546336 AATTTATGAA
Statistics
Matches: 193, Mismatches: 25, Indels: 13
0.84 0.11 0.06
Matches are distributed among these distances:
256 2 0.01
257 72 0.37
258 105 0.54
259 8 0.04
260 6 0.03
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (259 bp):
TAAATAATAATATTTGATAAATTTTAAAAATTCAAAACCAAGAAAAATCCCTTAGAAAAAATTTA
CGGTATAGAAAACATCATATTTCAAAAAAAAGGAATTTCAAAGAAAAAATTAAAAAACTCATGAA
AATGAATTAACTTTTGAAAACTGATTTAATATAAAATAAATAATGATGTTTGATAAATTTTAAAA
ATTAAAAACTAAGAAAAATCCTCTCGAAAATGAATTAACTTTTGAAAACTGATTTATTATAAAA
Found at i:1547906 original size:42 final size:42
Alignment explanation
Indices: 1547823--1547932 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
1547813 GAGATTAAGT
* *
1547823 CGATGAGCAGACAAAAGATAAAAAAGTCTCCCGGGTTAAAGC
1 CGATGAGCAGACAAAAGATAAAAAAGTCTCCCGAGTCAAAGC
* * * * *
1547865 CGATGAGTAGACAAAGGGTAAAAAAGTCTCTCTAGTCAAAGC
1 CGATGAGCAGACAAAAGATAAAAAAGTCTCCCGAGTCAAAGC
* * * * *
1547907 CAACGAGCAAATAGAAGATAAAAAAG
1 CGATGAGCAGACAAAAGATAAAAAAG
1547933 ACTCTTGGGT
Statistics
Matches: 53, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.46, C:0.16, G:0.23, T:0.15
Consensus pattern (42 bp):
CGATGAGCAGACAAAAGATAAAAAAGTCTCCCGAGTCAAAGC
Found at i:1547986 original size:42 final size:41
Alignment explanation
Indices: 1547934--1548185 Score: 209
Period size: 42 Copynumber: 6.0 Consensus size: 41
1547924 ATAAAAAAGA
* * *
1547934 CTCTTGGGTCAAAATTGATAGGCAGACAAAGGGCAAAGAAGT
1 CTCTTGGGTCAAAGTCGA-CGGCAGACAAAGGGCAAAGAAGT
* * * * **
1547976 TTCTTAGGTCAAAGTCGACAGGTAAACAAAGGATAAAGAAGT
1 CTCTTGGGTCAAAGTCGAC-GGCAGACAAAGGGCAAAGAAGT
* * * * *
1548018 TTCCTGGGTCAAAGTCGATGAGCAGACAAAGAGCAAAGAAAT
1 CTCTTGGGTCAAAGTCGACG-GCAGACAAAGGGCAAAGAAGT
* ** *
1548060 CTCTTGGGTTAAACCCGATGAGCAGACAAAGGGCAAAGAAGT
1 CTCTTGGGTCAAAGTCGACG-GCAGACAAAGGGCAAAGAAGT
* * * *
1548102 CTCTGGGGTCAAAGTCGACGGGCAGACAAAGGGAAAACAAAT
1 CTCTTGGGTCAAAGTCGAC-GGCAGACAAAGGGCAAAGAAGT
* * *
1548144 CTCTCGGGTCAAA-CCTGACGGGCAGACAAAGGGTAAAGAAGT
1 CTCTTGGGTCAAAGTC-GAC-GGCAGACAAAGGGCAAAGAAGT
1548186 TTCCCGAGTC
Statistics
Matches: 168, Mismatches: 38, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
41 2 0.01
42 165 0.98
43 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (41 bp):
CTCTTGGGTCAAAGTCGACGGCAGACAAAGGGCAAAGAAGT
Found at i:1548005 original size:126 final size:127
Alignment explanation
Indices: 1547875--1548156 Score: 272
Period size: 126 Copynumber: 2.2 Consensus size: 127
1547865 CGATGAGTAG
* *
1547875 ACAAAGGGTAAAAAAGTCTCTCT-AGTCAAAGCCAACGAGCAAATAGAAGA-TAAA-AAAGACTC
1 ACAAAGGGTAAAAAAGTCTCTCTGAGTCAAAGCCAACGAGCAAACA-AAGAGCAAAGAAA-ACTC
** * * *
1547937 TTGGGTCAAAATTGAT-AGGCAGACAAAGGGCAAAGAAGTTTCTTAGGTCAAAGTCGACAGGTAA
64 TTGGGTCAAAACCGATGA-GCAGACAAAGGGCAAAGAAGTCTCTGAGGTCAAAGTCGACAGGCAA
* * * * * * * * *
1548001 ACAAAGGATAAAGAAGTTTC-CTGGGTCAAAGTCGATGAGCAGACAAAGAGCAAAGAAATCTCTT
1 ACAAAGGGTAAAAAAGTCTCTCTGAGTCAAAGCCAACGAGCAAACAAAGAGCAAAGAAAACTCTT
* * * * *
1548065 GGGTTAAACCCGATGAGCAGACAAAGGGCAAAGAAGTCTCTGGGGTCAAAGTCGACGGGCAG
66 GGGTCAAAACCGATGAGCAGACAAAGGGCAAAGAAGTCTCTGAGGTCAAAGTCGACAGGCAA
* *
1548127 ACAAAGGG-AAAACAAATCTCTC-GGGTCAAA
1 ACAAAGGGTAAAA-AAGTCTCTCTGAGTCAAA
1548157 CCTGACGGGC
Statistics
Matches: 125, Mismatches: 25, Indels: 12
0.77 0.15 0.07
Matches are distributed among these distances:
125 9 0.07
126 111 0.89
127 5 0.04
ACGTcount: A:0.41, C:0.17, G:0.26, T:0.17
Consensus pattern (127 bp):
ACAAAGGGTAAAAAAGTCTCTCTGAGTCAAAGCCAACGAGCAAACAAAGAGCAAAGAAAACTCTT
GGGTCAAAACCGATGAGCAGACAAAGGGCAAAGAAGTCTCTGAGGTCAAAGTCGACAGGCAA
Found at i:1548089 original size:84 final size:84
Alignment explanation
Indices: 1548001--1548199 Score: 247
Period size: 84 Copynumber: 2.4 Consensus size: 84
1547991 CGACAGGTAA
* * * * *
1548001 ACAAAGGATAAAGAAGTTTCCTGGGTCAAAGTCGATGAGCAGACAAAGAGCAAAGAAATCTCTTG
1 ACAAAGGGTAAAGAAGTTTCCTGGGTCAAAGTCGACGAGCAGACAAAGAGAAAACAAATCTCTCG
* *
1548066 GGTTAAACCCGATGAGCAG
66 GGTCAAACCCGACGAGCAG
* * * *
1548085 ACAAAGGGCAAAGAAGTCT-CTGGGGTCAAAGTCGACGGGCAGACAAAGGGAAAACAAATCTCTC
1 ACAAAGGGTAAAGAAGTTTCCT-GGGTCAAAGTCGACGAGCAGACAAAGAGAAAACAAATCTCTC
* *
1548149 GGGTCAAACCTGACGGGCAG
65 GGGTCAAACCCGACGAGCAG
* *
1548169 ACAAAGGGTAAAGAAGTTTCCCGAGTCAAAG
1 ACAAAGGGTAAAGAAGTTTCCTGGGTCAAAG
1548200 CCCGTAGACA
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
83 2 0.02
84 93 0.97
85 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.28, T:0.15
Consensus pattern (84 bp):
ACAAAGGGTAAAGAAGTTTCCTGGGTCAAAGTCGACGAGCAGACAAAGAGAAAACAAATCTCTCG
GGTCAAACCCGACGAGCAG
Found at i:1548169 original size:126 final size:126
Alignment explanation
Indices: 1547955--1548183 Score: 284
Period size: 126 Copynumber: 1.8 Consensus size: 126
1547945 AAATTGATAG
* * * * * *
1547955 GCAGACAAAGGGCAAAGAAGTTTCTTAGGTCAAAGTCGACAGGTAAACAAAGGATAAAGAAGTTT
1 GCAGACAAAGGGCAAAGAAGTCTCTGAGGTCAAAGTCGACAGGCAAACAAAGGATAAACAAATCT
* *
1548020 CCTGGGTCAAAGTCGATGAGCAGACAAAGAGCAAAGAAATCTCTTGGGTTAAACCCGATGA
66 CCTGGGTCAAACTCGACGAGCAGACAAAGAGCAAAGAAATCTCTTGGGTTAAACCCGATGA
* * *
1548081 GCAGACAAAGGGCAAAGAAGTCTCTGGGGTCAAAGTCGACGGGCAGACAAAGGGA-AAACAAATC
1 GCAGACAAAGGGCAAAGAAGTCTCTGAGGTCAAAGTCGACAGGCAAACAAA-GGATAAACAAATC
* * *
1548145 T-CTCGGGTCAAAC-CTGACGGGCAGACAAAGGGTAAAGAA
65 TCCT-GGGTCAAACTC-GACGAGCAGACAAAGAGCAAAGAA
1548184 GTTTCCCGAG
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
125 3 0.03
126 80 0.93
127 3 0.03
ACGTcount: A:0.39, C:0.17, G:0.28, T:0.15
Consensus pattern (126 bp):
GCAGACAAAGGGCAAAGAAGTCTCTGAGGTCAAAGTCGACAGGCAAACAAAGGATAAACAAATCT
CCTGGGTCAAACTCGACGAGCAGACAAAGAGCAAAGAAATCTCTTGGGTTAAACCCGATGA
Found at i:1549136 original size:18 final size:19
Alignment explanation
Indices: 1549105--1549144 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
1549095 TTTAGTTCCT
1549105 ATTAAATTAGTTTTCAAAA
1 ATTAAATTAGTTTTCAAAA
* *
1549124 ATTAATTTA-TTTTCATAA
1 ATTAAATTAGTTTTCAAAA
1549142 ATT
1 ATT
1549145 TTTAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (19 bp):
ATTAAATTAGTTTTCAAAA
Found at i:1549386 original size:166 final size:163
Alignment explanation
Indices: 1549021--1549599 Score: 598
Period size: 166 Copynumber: 3.5 Consensus size: 163
1549011 CAAATTACGA
* * *
1549021 AGTTTTCTTCTCCGTAAATTTTTTTGAGAGGCTTTTTCTTGGTTTTTAATTTTT-AAATTCA-CT
1 AGTTTTCTACTCCGTAAATTTTTTCGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATC-
* * * * *
1549084 AAATATTGTTATTTAGTTCCTATTAAATT-AGTTTTCAAAAATTAATTTATTTTCATAAATTTTT
65 AAATATTATTATTTAATTCATATT-AATTCAGTTTTAAAAAATTAATTAATTTTCATAAA-TTTT
* * * * *
1549148 AAATTTTTCC-TAAAATT-TCCTTATTTTCGAAAAACGG
128 GATTTTTTCCTTGAAATTCTCC---TTTTCTAAAAATGG
* * *
1549185 AGTTTTCTACTTCGTAAATTTTTTTGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTTATCA
1 AGTTTTCTACTCCGTAAATTTTTTCGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCA
* *
1549250 AATATTATTATTTAATTCATACTAATTCAGTTTTAAAAAATTCATTAATTTTCATAAATATTTGA
66 AATATTATTATTTAATTCATATTAATTCAGTTTTAAAAAATTAATTAATTTTCATAAAT-TTTGA
1549315 TTTTTTTCCTTGAAATTCTCCTTTTCTAAAATATGG
130 -TTTTTTCCTTGAAATTCTCCTTTTCTAAAA-ATGG
* * * * *
1549351 AGTTTTCTACTCTGTAAATTTTTTCGA-AGGGATTTTTCTTAGTTTTCAGTTTTTAAAATTTATC
1 AGTTTTCTACTCCGTAAATTTTTTCGAGA-GGATTTTTCTTGGTTTTTAATTTTTAAAATTCATC
* * * * * * * *
1549415 AAATATCATCATTTAATTCAAATTAAATCAGTTTTGAAAATTTAATTCATTTTCATAAGTTTTGG
65 AAATATTATTATTTAATTCATATTAATTCAGTTTTAAAAAATTAATTAATTTTCATAAATTTT-G
* * *
1549480 ATTTTTTCTTTGAAA-TCCCTCTTTTCTTGAAAAATTG
129 ATTTTTTCCTTGAAATTCTC-CTTTTC-T-AAAAATGG
* * * * **
1549517 AGTTTTCTACTCCGTAAATAATTTTCGGGA-GCTTTTTCTTGATTTAAAATTTTTAAAATTCATC
1 AGTTTTCTACTCCGTAAAT-TTTTTCGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATC
*
1549581 TAATATTATTATTTAATTC
65 AAATATTATTATTTAATTC
1549600 CCATTAAAAC
Statistics
Matches: 352, Mismatches: 48, Indels: 28
0.82 0.11 0.07
Matches are distributed among these distances:
164 59 0.17
165 89 0.25
166 184 0.52
167 16 0.05
168 4 0.01
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.51
Consensus pattern (163 bp):
AGTTTTCTACTCCGTAAATTTTTTCGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCA
AATATTATTATTTAATTCATATTAATTCAGTTTTAAAAAATTAATTAATTTTCATAAATTTTGAT
TTTTTCCTTGAAATTCTCCTTTTCTAAAAATGG
Found at i:1549807 original size:14 final size:15
Alignment explanation
Indices: 1549788--1549819 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
1549778 AAATTTTATC
1549788 TTAATTTTTA-AATT
1 TTAATTTTTATAATT
1549802 TTAATTTTTATAATT
1 TTAATTTTTATAATT
1549817 TTA
1 TTA
1549820 TCCTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTAATTTTTATAATT
Found at i:1550944 original size:18 final size:18
Alignment explanation
Indices: 1550908--1550944 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1550898 CTATTTGGGG
*
1550908 TTTGTTTTGTTTGACATA
1 TTTGTTTTGTATGACATA
*
1550926 TTTGTTTTGTATGATATA
1 TTTGTTTTGTATGACATA
1550944 T
1 T
1550945 GTTTAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.16, T:0.62
Consensus pattern (18 bp):
TTTGTTTTGTATGACATA
Found at i:1552075 original size:34 final size:35
Alignment explanation
Indices: 1552036--1552111 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
1552026 ATTTTCTACA
*
1552036 TTTCAAAGAGC-TTT-TGTATTCTTTGTTG-TTATTC
1 TTTCAAAGAGCATTTATGT-TCCTTTG-TGCTTATTC
**
1552070 TTTCAAAGCTCATTTATGTTCCTTTGTGCTTATTC
1 TTTCAAAGAGCATTTATGTTCCTTTGTGCTTATTC
1552105 TTTCAAA
1 TTTCAAA
1552112 AAACACTAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
34 11 0.31
35 22 0.61
36 3 0.08
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.53
Consensus pattern (35 bp):
TTTCAAAGAGCATTTATGTTCCTTTGTGCTTATTC
Found at i:1558546 original size:31 final size:32
Alignment explanation
Indices: 1558485--1558554 Score: 97
Period size: 31 Copynumber: 2.2 Consensus size: 32
1558475 GCTTGTCTTG
* *
1558485 ATATTTTCTACATGAAGGCTTGTTTATTGATTC
1 ATATTTTCTACATCAA-GATTGTTTATTGATTC
*
1558518 ATATTTTCTACATCAA-ATTGTTTTTTGATTC
1 ATATTTTCTACATCAAGATTGTTTATTGATTC
1558549 ATATTT
1 ATATTT
1558555 CACTTGATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 19 0.56
33 15 0.44
ACGTcount: A:0.26, C:0.11, G:0.10, T:0.53
Consensus pattern (32 bp):
ATATTTTCTACATCAAGATTGTTTATTGATTC
Found at i:1559219 original size:18 final size:19
Alignment explanation
Indices: 1559181--1559226 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
1559171 ACCTTGTTCG
*
1559181 AAATGATTTTCAATATCAA
1 AAATGATTTTCAAGATCAA
*
1559200 AAATGTTTTTCAAGAT-AA
1 AAATGATTTTCAAGATCAA
*
1559218 AAATCATTT
1 AAATGATTT
1559227 GTTTTCAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.39
Consensus pattern (19 bp):
AAATGATTTTCAAGATCAA
Found at i:1560828 original size:156 final size:156
Alignment explanation
Indices: 1560542--1560827 Score: 371
Period size: 156 Copynumber: 1.8 Consensus size: 156
1560532 GTTATCACTA
* * * *
1560542 GGTCCGCTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCACCCTTCTTATAGTCCTTTTTAAG
1 GGTCCGCTTTTATGCTAAAGGTGAGTATTTAGGATAGGTTCACCCTTCTTACAATCCTTTTTAAG
* * * ** * * *
1560607 TCCTTTAGGGGTACTAGGATACTTTCACATCGAAAGTATCCCTTAGGGGTATTTTTGTAATTTTT
66 TCCTTTACGGATACTAGGATACTTCCACATCGAAAGTATCCCCAAGAGGCATTTTCGTAATTTTT
1560672 TAAAACAGAGTCATAGGTTATAACCG
131 TAAAACAGAGTCATAGGTTATAACCG
*
1560698 GGTCTGCTTTTATG-TCAAAGGTGAGTATTTAGGATAGGTTCATCCCTT-TTACAATCCTTTTTA
1 GGTCCGCTTTTATGCT-AAAGGTGAGTATTTAGGATAGGTTCA-CCCTTCTTACAATCCTTTTTA
* * * * *
1560761 AGTCCTTTACGGATA-TCGGGTACTTCCACGTTGAAGGTATCCCCAAGAGGCATTTTCGTAATTT
64 AGTCCTTTACGGATACTAGGATACTTCCACATCGAAAGTATCCCCAAGAGGCATTTTCGTAATTT
1560825 TTT
129 TTT
1560828 TGGAACTTAG
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
155 42 0.38
156 63 0.57
157 5 0.05
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.38
Consensus pattern (156 bp):
GGTCCGCTTTTATGCTAAAGGTGAGTATTTAGGATAGGTTCACCCTTCTTACAATCCTTTTTAAG
TCCTTTACGGATACTAGGATACTTCCACATCGAAAGTATCCCCAAGAGGCATTTTCGTAATTTTT
TAAAACAGAGTCATAGGTTATAACCG
Found at i:1564288 original size:12 final size:12
Alignment explanation
Indices: 1564259--1564302 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
1564249 AATTTTCTCT
1564259 AAATAAAAAA-A
1 AAATAAAAAAGA
*
1564270 CAA-AAAAAAGA
1 AAATAAAAAAGA
*
1564281 AAATAAAAATGA
1 AAATAAAAAAGA
1564293 AAATAAAAAA
1 AAATAAAAAA
1564303 ATCATGCAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 6 0.22
11 5 0.19
12 16 0.59
ACGTcount: A:0.84, C:0.02, G:0.05, T:0.09
Consensus pattern (12 bp):
AAATAAAAAAGA
Found at i:1566633 original size:48 final size:48
Alignment explanation
Indices: 1566596--1566929 Score: 337
Period size: 48 Copynumber: 7.0 Consensus size: 48
1566586 CAAATTCAAA
1566596 TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTT
1 TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTT
* ** ** * * ***
1566644 TGTTCCCTTGTTTGACTGTATTGGTGTTAGAACTTGGTCAAACTCAAA
1 TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTT
* * * *
1566692 TCTTCCCTTATTTGACTATATTGGTGTTAGGGCCTGGTTAAACTCTTT
1 TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTT
* ** * * * ***
1566740 TGTTCCCTTGTTTGACTATATTAGTGTTAGGACCT-GATCAAACTCAAA
1 TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAG-TCAAACTCTTT
* * ** * *
1566788 TCTTTCCTCGTTTGACTACAATAGTGTTAGGGCCTAGTCAAACTCTTT
1 TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTT
* * *
1566836 TCATCCCTCATTTGACTGTATTGGTGTTAGGGCTTCGTCAAACTCTTT
1 TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTT
* * *
1566884 TCATCCTTCATTTGACTGTATTGGTGTTAGGGCCTGGTCAAACTCT
1 TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCT
1566930 CCTTTTTCCC
Statistics
Matches: 235, Mismatches: 49, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
47 1 0.00
48 233 0.99
49 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.19, T:0.41
Consensus pattern (48 bp):
TCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTT
Found at i:1566697 original size:96 final size:96
Alignment explanation
Indices: 1566584--1566929 Score: 440
Period size: 96 Copynumber: 3.6 Consensus size: 96
1566574 TTAAGAACTA
* *
1566584 GTCAAATTCAAATCTTCCCTCATTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTGTTC
1 GTCAAACTCAAATCTTCCCTCATTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCTTTTGTTC
*
1566649 CCTTGTTTGACTGTATTGGTGTTAGAACTTG
66 CCTTGTTTGACTGTATTGGTGTTAGGACTTG
* * *
1566680 GTCAAACTCAAATCTTCCCTTATTTGACTATATTGGTGTTAGGGCCTGGTTAAACTCTTTTGTTC
1 GTCAAACTCAAATCTTCCCTCATTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCTTTTGTTC
* * *
1566745 CCTTGTTTGACTATATTAGTGTTAGGACCTG
66 CCTTGTTTGACTGTATTGGTGTTAGGACTTG
* * * * * * **
1566776 ATCAAACTCAAATCTTTCCTCGTTTGACTACAATAGTGTTAGGGCCTAGTCAAACTCTTTTCATC
1 GTCAAACTCAAATCTTCCCTCATTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCTTTTGTTC
** * *
1566841 CCTCATTTGACTGTATTGGTGTTAGGGCTTC
66 CCTTGTTTGACTGTATTGGTGTTAGGACTTG
*** * * * *
1566872 GTCAAACTCTTTTCATCCTTCATTTGACTGTATTGGTGTTAGGGCCTGGTCAAACTCT
1 GTCAAACTCAAATCTTCCCTCATTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCT
1566930 CCTTTTTCCC
Statistics
Matches: 210, Mismatches: 40, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 210 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (96 bp):
GTCAAACTCAAATCTTCCCTCATTTGACTATATTGGTGTTAGGGCCTAGTCAAACTCTTTTGTTC
CCTTGTTTGACTGTATTGGTGTTAGGACTTG
Found at i:1567054 original size:44 final size:44
Alignment explanation
Indices: 1566943--1567143 Score: 203
Period size: 44 Copynumber: 4.6 Consensus size: 44
1566933 TTTTCCCATC
* *
1566943 TGATGTATGGTTACCACTTTGGTCAGATTCTTTTTATTCTGATT
1 TGATGTATGGTTACCACCTTGGTCAGATTCTTTTCATTCTGATT
*
1566987 TGATGTATGGTTACCACTTTGGTCAGATTCTTTTCATTCTGATT
1 TGATGTATGGTTACCACCTTGGTCAGATTCTTTTCATTCTGATT
* * * * *
1567031 TGATGTATGGTTACCACCCTGGTCAAATCTGCCTCTC-TCCT--TT
1 TGATGTATGGTTACCACCTTGGTCAGAT-T-CTTTTCATTCTGATT
* * * * * * *
1567074 CTAACGTATGGTTTCCACCCTAGTCAGATGCTTTTCATTTTGATT
1 -TGATGTATGGTTACCACCTTGGTCAGATTCTTTTCATTCTGATT
1567119 TG-TCGTATGGTTACCACCTTGGTCA
1 TGAT-GTATGGTTACCACCTTGGTCA
1567144 AATCTGCCTC
Statistics
Matches: 128, Mismatches: 22, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
42 4 0.03
43 4 0.03
44 110 0.86
45 6 0.05
46 4 0.03
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.43
Consensus pattern (44 bp):
TGATGTATGGTTACCACCTTGGTCAGATTCTTTTCATTCTGATT
Found at i:1567083 original size:88 final size:88
Alignment explanation
Indices: 1566991--1567187 Score: 265
Period size: 88 Copynumber: 2.2 Consensus size: 88
1566981 CTGATTTGAT
** * *
1566991 GTATGGTTACCACTTTGGTCAGATTCTTTTCATTCTGATTTGAT-GTATGGTTACCACCCTGGTC
1 GTATGGTTACCACCCTAGTCAGATGCTTTTCATTCTGATTTG-TCGTATGGTTACCACCCTGGTC
1567055 AAATCTGCCT-CTCTCCT-TTCTAAC
65 AAATCTGCCTCCT-TCCTGTT-TAAC
* * *
1567079 GTATGGTTTCCACCCTAGTCAGATGCTTTTCATTTTGATTTGTCGTATGGTTACCACCTTGGTCA
1 GTATGGTTACCACCCTAGTCAGATGCTTTTCATTCTGATTTGTCGTATGGTTACCACCCTGGTCA
*
1567144 AATCTGCCTCCTTCCTGTTTGAC
66 AATCTGCCTCCTTCCTGTTTAAC
*
1567167 ATATGGTTACCACCCTAGTCA
1 GTATGGTTACCACCCTAGTCA
1567188 AACGATTTGT
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
87 1 0.01
88 91 0.95
89 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (88 bp):
GTATGGTTACCACCCTAGTCAGATGCTTTTCATTCTGATTTGTCGTATGGTTACCACCCTGGTCA
AATCTGCCTCCTTCCTGTTTAAC
Found at i:1567375 original size:42 final size:41
Alignment explanation
Indices: 1567268--1567563 Score: 247
Period size: 42 Copynumber: 7.0 Consensus size: 41
1567258 TACCTTTGAT
* * *
1567268 CCTTTGTTTGCCTGTCGACTTTGACTCGGGAGACTCCTTCATC
1 CCTTTGTCTGCCCGTCGACTTTGACT-AGGAGACTCCTTCA-C
* * * * *
1567311 TCTTTGTCTACCCATCGGCTTTGACTAGGGAGACTCCTTTAC
1 CCTTTGTCTGCCCGTCGACTTTGACTA-GGAGACTCCTTCAC
* ** *
1567353 CCTTTGTCGGCTTGTCGACTTTGACCTAAGAGACTCCTTCAC
1 CCTTTGTCTGCCCGTCGACTTTGA-CTAGGAGACTCCTTCAC
** * *
1567395 CCTTTGT-TGGCCAATC-AGCTTTGACCTAGGAAACTCTTTCAC
1 CCTTTGTCT-GCCCGTCGA-CTTTGA-CTAGGAGACTCCTTCAC
* * * * *
1567437 CTTTTGTCTGCCCATCGGCTTTGACCCAAGAGAC-CCTTTCAC
1 CCTTTGTCTGCCCGTCGACTTTGA-CTAGGAGACTCC-TTCAC
* *
1567479 CCTTTGTTTGCCCGTCGACTTTGACTTGGGAGACTCCTTCAC
1 CCTTTGTCTGCCCGTCGACTTTGAC-TAGGAGACTCCTTCAC
* *
1567521 TCTTTGTCTACCCGTCGACTTTGACTATGGAGACTCCTTCAC
1 CCTTTGTCTGCCCGTCGACTTTGACTA-GGAGACTCCTTCAC
1567563 C
1 C
1567564 TTCGTGGGCC
Statistics
Matches: 200, Mismatches: 43, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
41 4 0.02
42 158 0.79
43 38 0.19
ACGTcount: A:0.16, C:0.31, G:0.19, T:0.34
Consensus pattern (41 bp):
CCTTTGTCTGCCCGTCGACTTTGACTAGGAGACTCCTTCAC
Found at i:1567543 original size:126 final size:125
Alignment explanation
Indices: 1567268--1567565 Score: 309
Period size: 126 Copynumber: 2.4 Consensus size: 125
1567258 TACCTTTGAT
* * *
1567268 CCTTTGTTTG-CCTGTCGACTTTGACTCGGGAGACTCCTTCATCTCTTTGTCTACCCATCGGCTT
1 CCTTTG-TTGACCAGTCGACTTTGACT-AGGAGACTCCTTCACCT-TTTGTCTACCCATCGGCTT
* * **
1567332 TGACTAGGGAGACTCCTTTACCCTTTGTCGGCTTGTCGACTTTGACCTAAGAGACTCCTTCAC
63 TGACCAGAGAGACTCCTTTACCCTTTGTCGGCCCGTCGACTTTGACCTAAGAGACTCCTTCAC
* * * * *
1567395 CCTTTGTTGGCCAATC-AGCTTTGACCTAGGAAACTCTTTCACCTTTTGTCTGCCCATCGGCTTT
1 CCTTTGTTGACCAGTCGA-CTTTGA-CTAGGAGACTCCTTCACCTTTTGTCTACCCATCGGCTTT
** * **
1567459 GACCCA-AGAGAC-CCTTTCACCCTTTGTTTGCCCGTCGACTTTGACTTGGGAGACTCCTTCAC
64 GA-CCAGAGAGACTCCTTT-ACCCTTTGTCGGCCCGTCGACTTTGACCTAAGAGACTCCTTCAC
* *
1567521 TCTTTGTCT-ACCCGTCGACTTTGACTATGGAGACTCCTTCACCTT
1 CCTTTGT-TGACCAGTCGACTTTGACTA-GGAGACTCCTTCACCTT
1567566 CGTGGGCCCA
Statistics
Matches: 141, Mismatches: 22, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
125 8 0.06
126 98 0.70
127 33 0.23
128 2 0.01
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.35
Consensus pattern (125 bp):
CCTTTGTTGACCAGTCGACTTTGACTAGGAGACTCCTTCACCTTTTGTCTACCCATCGGCTTTGA
CCAGAGAGACTCCTTTACCCTTTGTCGGCCCGTCGACTTTGACCTAAGAGACTCCTTCAC
Found at i:1567699 original size:42 final size:40
Alignment explanation
Indices: 1567625--1567716 Score: 96
Period size: 42 Copynumber: 2.2 Consensus size: 40
1567615 TTAGACTTAG
* * * * *
1567625 GAGACTTCTTCTTTTTGTCTGCCTGTCGACTCAAAC-CTA
1 GAGACTTTTTCTTTTTGTCTACCCGTCAACTCAAACTCAA
*
1567664 GAAGACTTTTTCATTATTTGTCTACCCGTCAACTCAGACTCAA
1 G-AGACTTTTTC-TT-TTTGTCTACCCGTCAACTCAAACTCAA
1567707 GAGACTTTTT
1 GAGACTTTTT
1567717 ATCCTTTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
39 1 0.02
40 9 0.21
41 2 0.05
42 28 0.65
43 3 0.07
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (40 bp):
GAGACTTTTTCTTTTTGTCTACCCGTCAACTCAAACTCAA
Found at i:1567775 original size:42 final size:41
Alignment explanation
Indices: 1567721--1567856 Score: 125
Period size: 42 Copynumber: 3.3 Consensus size: 41
1567711 CTTTTTATCC
*
1567721 TTTATTTG-CCTGTTGGCTCAGTCCCCGATAAACCTATCATCT
1 TTTA-TTGACCTGTTGGCTTAGTCCCCGATAAACCT-TCATCT
* * * *
1567763 TTTATTGACCTGTTAGCTTAGTCTCCGATCAA-CTTCATCC
1 TTTATTGACCTGTTGGCTTAGTCCCCGATAAACCTTCATCT
* * * * *
1567803 CTTGTTTACCTGTCGGCTTAGT-CCCTAGTAAACCTCTCATCT
1 TTTATTGACCTGTTGGCTTAGTCCCCGA-TAAACCT-TCATCT
1567845 TTTATTGACCTG
1 TTTATTGACCTG
1567857 GCAGCTTAGT
Statistics
Matches: 73, Mismatches: 17, Indels: 8
0.74 0.17 0.08
Matches are distributed among these distances:
39 3 0.04
40 25 0.34
41 7 0.10
42 38 0.52
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (41 bp):
TTTATTGACCTGTTGGCTTAGTCCCCGATAAACCTTCATCT
Found at i:1567864 original size:42 final size:41
Alignment explanation
Indices: 1567740--1567884 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 41
1567730 CTGTTGGCTC
* *
1567740 AGTCCCCGATAAACCTATCATCTTTTATTGACCTGTTAGCTT
1 AGTCTCCGATAAACCT-TCATCTTTTATTGACCTGTCAGCTT
* ** * * *
1567782 AGTCTCCGATCAA-CTTCATCCCTTGTTTACCTGTCGGCTT
1 AGTCTCCGATAAACCTTCATCTTTTATTGACCTGTCAGCTT
* *
1567822 AGTC-CCTAGTAAACCTCTCATCTTTTATTGACCTGGCAGCTT
1 AGTCTCCGA-TAAACCT-TCATCTTTTATTGACCTGTCAGCTT
* * *
1567864 AGTCTTCGGTCAACCTTCATC
1 AGTCTCCGATAAACCTTCATC
1567885 CTTTGTTTAC
Statistics
Matches: 79, Mismatches: 20, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
39 3 0.04
40 26 0.33
41 9 0.11
42 40 0.51
43 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.14, T:0.37
Consensus pattern (41 bp):
AGTCTCCGATAAACCTTCATCTTTTATTGACCTGTCAGCTT
Found at i:1567866 original size:82 final size:83
Alignment explanation
Indices: 1567749--1567900 Score: 234
Period size: 82 Copynumber: 1.8 Consensus size: 83
1567739 CAGTCCCCGA
**
1567749 TAAACCTATCATCTTTTATTGACCTGTTAGCTTAGTCTCCGATCAA-CTTCATCCCTTGTTTACC
1 TAAACCTATCATCTTTTATTGACCTGGCAGCTTAGTCTCCGATCAACCTTCATCCCTTGTTTACC
1567813 TGTCGGCTTAGTCCCTAG
66 TGTCGGCTTAGTCCCTAG
* * * * *
1567831 TAAACCTCTCATCTTTTATTGACCTGGCAGCTTAGTCTTCGGTCAACCTTCATCCTTTGTTTACT
1 TAAACCTATCATCTTTTATTGACCTGGCAGCTTAGTCTCCGATCAACCTTCATCCCTTGTTTACC
1567896 TGTCG
66 TGTCG
1567901 ATTTAGTTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
82 41 0.66
83 21 0.34
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (83 bp):
TAAACCTATCATCTTTTATTGACCTGGCAGCTTAGTCTCCGATCAACCTTCATCCCTTGTTTACC
TGTCGGCTTAGTCCCTAG
Found at i:1568002 original size:84 final size:82
Alignment explanation
Indices: 1567791--1568148 Score: 290
Period size: 84 Copynumber: 4.3 Consensus size: 82
1567781 TAGTCTCCGA
* * * * ** **
1567791 TCAA-CTTCATCCCTTGTTTACCTGTCGGCTTAGTCCCTAGTAAACCTCTCAT-CTTTTATTGAC
1 TCAACCTTCATCCTTTGTTTACCTGTCGGTTTAGTCCCGA-TAAACC-CTTATCCCCTTGGTGAC
*** * *
1567854 CTGGCAGCTTAGTCTTCGG
64 CAATCAGTTTAGTCCTCGG
* * *
1567873 TCAACCTTCATCCTTTGTTTACTTGTCGATTTAGTTCCTGATAAACCCTTATCCCCTTGGTGACC
1 TCAACCTTCATCCTTTGTTTACCTGTCGGTTTAG-TCCCGATAAACCCTTATCCCCTTGGTGACC
* *
1567938 CATCGGTTTAGTCCTCGG
65 AATCAGTTTAGTCCTCGG
* * *
1567956 TCAACCTTTCATCCATTGTTTACCTGTTGGTTTAGTCCGCGATAAACCTATTA-CCCCTATGGTG
1 TCAACC-TTCATCCTTTGTTTACCTGTCGGTTTAGTCC-CGATAAACC-CTTATCCCCT-TGGTG
* * * *
1568020 ACCTATCAGCTTAGTCTTTGG
62 ACCAATCAGTTTAGTCCTCGG
* * * * * ** * *
1568041 TCAACCTTCATCTTTTATTTACTTGTCGGCTCAGTATTCGGTAAACCCTTATCCCCTTAGTGACC
1 TCAACCTTCATCCTTTGTTTACCTGTCGGTTTAGT-CCCGATAAACCCTTATCCCCTTGGTGACC
*
1568106 AATCAGTTTAGTCCCCGG
65 AATCAGTTTAGTCCTCGG
*
1568124 TCAACCCTTCATCCCTTGTTTACCT
1 TCAA-CCTTCATCCTTTGTTTACCT
1568149 ATCGACTCAG
Statistics
Matches: 217, Mismatches: 49, Indels: 18
0.76 0.17 0.06
Matches are distributed among these distances:
82 8 0.04
83 87 0.40
84 92 0.42
85 30 0.14
ACGTcount: A:0.18, C:0.29, G:0.15, T:0.38
Consensus pattern (82 bp):
TCAACCTTCATCCTTTGTTTACCTGTCGGTTTAGTCCCGATAAACCCTTATCCCCTTGGTGACCA
ATCAGTTTAGTCCTCGG
Found at i:1568158 original size:84 final size:82
Alignment explanation
Indices: 1567862--1568190 Score: 286
Period size: 84 Copynumber: 3.9 Consensus size: 82
1567852 ACCTGGCAGC
* * * *
1567862 TTAGTCTTCGGTCAACCTTCATCCTTTGTTTACTTGTCGATTTAGTTCCTGATAAACCCTTATCC
1 TTAGTCCTCGGTCAACCTTCATCCTTTGTTTACCTGTCGACTCAGTTCC-GATAAACCCTTATCC
* *
1567927 CCTTGGTGACCCATCGGT
65 CCTTGGTGACCAATCAGT
* * ** * * *
1567945 TTAGTCCTCGGTCAACCTTTCATCCATTGTTTACCTGTTGGTTTAGTCCGCGATAAACCTATTA-
1 TTAGTCCTCGGTCAACC-TTCATCCTTTGTTTACCTGTCGACTCAGTTC-CGATAAACC-CTTAT
* *
1568009 CCCCTATGGTGACCTATCAGC
63 CCCCT-TGGTGACCAATCAGT
* * * * * * * *
1568030 TTAGTCTTTGGTCAACCTTCATCTTTTATTTACTTGTCGGCTCAGTATTCGGTAAACCCTTATCC
1 TTAGTCCTCGGTCAACCTTCATCCTTTGTTTACCTGTCGACTCAGT-TCCGATAAACCCTTATCC
*
1568095 CCTTAGTGACCAATCAGT
65 CCTTGGTGACCAATCAGT
* * * *
1568113 TTAGTCCCCGGTCAACCCTTCATCCCTTGTTTACCTATCGACTCAG-TCCTTAGTAAACCCATTA
1 TTAGTCCTCGGTCAA-CCTTCATCCTTTGTTTACCTGTCGACTCAGTTCC-GA-TAAACCC-TTA
1568177 -CCCCTATGGTGACC
62 TCCCCT-TGGTGACC
1568191 TGTCAACTCA
Statistics
Matches: 196, Mismatches: 39, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
82 2 0.01
83 43 0.22
84 110 0.56
85 41 0.21
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.36
Consensus pattern (82 bp):
TTAGTCCTCGGTCAACCTTCATCCTTTGTTTACCTGTCGACTCAGTTCCGATAAACCCTTATCCC
CTTGGTGACCAATCAGT
Found at i:1568179 original size:168 final size:168
Alignment explanation
Indices: 1567858--1568264 Score: 446
Period size: 168 Copynumber: 2.4 Consensus size: 168
1567848 ATTGACCTGG
* * *
1567858 CAGCTTAGTCTTCGGTCAACCTTCATCCTTTGTTTACTTGTCGATTTAGTTCCTGATAAACCCTT
1 CAGCTTAGTCTTCGGTCAACCTTCATCCTTTATTTACTTGTCGACTCAGTTCCTGATAAACCCTT
* * * * * * * **
1567923 ATCCCCTTGGTGACCCATCGGTTTAGTCCTCGGTCAACCTTTCATCCATTGTTTACCTGTTGGTT
66 ATCCCCTTAGTGACCAATCAGTTTAGTCCCCGGTCAACCCTTCATCCATTGTTTACCTATCGACT
* * *
1567988 TAGTCCGCGATAAACCTATTACCCCTATGGTGACCTAT
131 CAGTCCGAGATAAACCCATTACCCCTATGGTGACCTAT
* * * * *
1568026 CAGCTTAGTCTTTGGTCAACCTTCATCTTTTATTTACTTGTCGGCTCAGTATTC-GGTAAACCCT
1 CAGCTTAGTCTTCGGTCAACCTTCATCCTTTATTTACTTGTCGACTCAGT-TCCTGATAAACCCT
*
1568090 TATCCCCTTAGTGACCAATCAGTTTAGTCCCCGGTCAACCCTTCATCCCTTGTTTACCTATCGAC
65 TATCCCCTTAGTGACCAATCAGTTTAGTCCCCGGTCAACCCTTCATCCATTGTTTACCTATCGAC
* *
1568155 TCAGTCCTTAG-TAAACCCATTACCCCTATGGTGACCTGT
130 TCAGTCC-GAGATAAACCCATTACCCCTATGGTGACCTAT
* * * * * *
1568194 CAACTCAGT-TTCCGATCAACCTTCATCTCTTTTTATTACCTATCTG-CTCAGTT-CTCGATAAA
1 CAGCTTAGTCTT-CGGTCAACCTTCATC-CTTTAT-TTACTTGTC-GACTCAGTTCCT-GATAAA
1568256 CCCCTTATC
61 -CCCTTATC
1568265 TCGATCATCT
Statistics
Matches: 198, Mismatches: 32, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
167 2 0.01
168 161 0.81
169 8 0.04
170 18 0.09
171 9 0.05
ACGTcount: A:0.20, C:0.30, G:0.14, T:0.37
Consensus pattern (168 bp):
CAGCTTAGTCTTCGGTCAACCTTCATCCTTTATTTACTTGTCGACTCAGTTCCTGATAAACCCTT
ATCCCCTTAGTGACCAATCAGTTTAGTCCCCGGTCAACCCTTCATCCATTGTTTACCTATCGACT
CAGTCCGAGATAAACCCATTACCCCTATGGTGACCTAT
Found at i:1568417 original size:83 final size:83
Alignment explanation
Indices: 1568268--1568608 Score: 355
Period size: 83 Copynumber: 4.1 Consensus size: 83
1568258 CCTTATCTCG
* * * ** *
1568268 ATCATCTTTTTATCCTTTGTTAACCTGTCAGCTTAGTCCCGGGTAAATTTTGTATCCTTTGTTGA
1 ATCAACTTTTTATCCCTTGTTAACCTATTGGCTTAGTCCCGGGTAAATTTTTTATCCTTTGTTGA
* * **
1568333 CTCGTCGGTTCGGTCCCA
66 CTCATCAGTTCAATCCCA
* * * *
1568351 ATCAACTTTCTATCCTTTGTTAACCTATCT-GCTTAGTCCTGGGTAAATTTTTTATCCTCTGTTG
1 ATCAACTTTTTATCCCTTGTTAACCTAT-TGGCTTAGTCCCGGGTAAATTTTTTATCCTTTGTTG
* * *
1568415 ACTCATTAGTTCAGTCCTA
65 ACTCATCAGTTCAATCCCA
* * *
1568434 GTCAACTTTTTATCCCTTGTTAACCTGTTGGCTTAGTCCCGGGTAAATTTTTTATCATTTGTTGA
1 ATCAACTTTTTATCCCTTGTTAACCTATTGGCTTAGTCCCGGGTAAATTTTTTATCCTTTGTTGA
*
1568499 CTCATC-GATTCAATCCTA
66 CTCATCAG-TTCAATCCCA
* * * * ** *
1568517 GTCAACTTTTTATCCCTTATTTACTTATTGGCTTAGTCCCAAGTAAATCTTTTAT-CTTGTGTTG
1 ATCAACTTTTTATCCCTTGTTAACCTATTGGCTTAGTCCCGGGTAAATTTTTTATCCTT-TGTTG
* **
1568581 ATTCGCCAGTTCAATCCCA
65 ACTCATCAGTTCAATCCCA
1568600 ATCAACTTT
1 ATCAACTTT
1568609 CCTCTTTGAG
Statistics
Matches: 219, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
82 4 0.02
83 214 0.98
84 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (83 bp):
ATCAACTTTTTATCCCTTGTTAACCTATTGGCTTAGTCCCGGGTAAATTTTTTATCCTTTGTTGA
CTCATCAGTTCAATCCCA
Found at i:1568431 original size:42 final size:42
Alignment explanation
Indices: 1568381--1568503 Score: 110
Period size: 41 Copynumber: 3.0 Consensus size: 42
1568371 TAACCTATCT
1568381 GCTTAGTCCTGGGTAAATTTTTTATCCTCTGTTGACTCATTA
1 GCTTAGTCCTGGGTAAATTTTTTATCCTCTGTTGACTCATTA
* * * * * *
1568423 G-TTCAGTCCT-AGTCAACTTTTTATCC-CTTGTTAAC-CTGTTG
1 GCTT-AGTCCTGGGTAAATTTTTTATCCTC-TGTTGACTC-ATTA
* * *
1568464 GCTTAGTCCCGGGTAAATTTTTTATCATTTGTTGACTCAT
1 GCTTAGTCCTGGGTAAATTTTTTATCCTCTGTTGACTCAT
1568504 CGATTCAATC
Statistics
Matches: 60, Mismatches: 14, Indels: 14
0.68 0.16 0.16
Matches are distributed among these distances:
40 2 0.03
41 29 0.48
42 28 0.47
43 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (42 bp):
GCTTAGTCCTGGGTAAATTTTTTATCCTCTGTTGACTCATTA
Found at i:1568485 original size:41 final size:41
Alignment explanation
Indices: 1568274--1568496 Score: 127
Period size: 42 Copynumber: 5.4 Consensus size: 41
1568264 CTCGATCATC
*
1568274 TTTTTATCCTTTGTTAACCTGTCAGCTTAGTCCCGGGTAAA
1 TTTTTATCCTTTGTTAACCTGTTAGCTTAGTCCCGGGTAAA
* * * * ** *
1568315 TTTTGTATCCTTTGTTGA-CTCG-TCGGTTCGGTCCC-AATCAAC
1 TTTT-TATCCTTTGTTAACCT-GTTAGCTT-AGTCCCGGGT-AAA
* * *
1568357 TTTCTATCCTTTGTTAACCTATCT-GCTTAGTCCTGGGTAAA
1 TTTTTATCCTTTGTTAACCTGT-TAGCTTAGTCCCGGGTAAA
* * * ** *
1568398 TTTTTTATCCTCTGTTGA-CTCATTAG-TTCAGT-CCTAGTCAAC
1 -TTTTTATCCTTTGTTAACCT-GTTAGCTT-AGTCCCGGGT-AAA
* *
1568440 TTTTTATCCCTTGTTAACCTGTTGGCTTAGTCCCGGGTAAA
1 TTTTTATCCTTTGTTAACCTGTTAGCTTAGTCCCGGGTAAA
*
1568481 TTTTTTATCATTTGTT
1 -TTTTTATCCTTTGTT
1568497 GACTCATCGA
Statistics
Matches: 131, Mismatches: 34, Indels: 33
0.66 0.17 0.17
Matches are distributed among these distances:
41 58 0.44
42 72 0.55
43 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.45
Consensus pattern (41 bp):
TTTTTATCCTTTGTTAACCTGTTAGCTTAGTCCCGGGTAAA
Found at i:1568572 original size:166 final size:166
Alignment explanation
Indices: 1568273--1568581 Score: 404
Period size: 166 Copynumber: 1.9 Consensus size: 166
1568263 TCTCGATCAT
* * *
1568273 CTTTTTATCCTTTGTTAACCTGTCAGCTTAGTCCCGGGTAAATTTTGTATCCTTTGTTGACTCGT
1 CTTTTTATCCCTTGTTAACCTGTCAGCTTAGTCCCGGGTAAATTTTGTATCATTTGTTGACTCAT
* ** * * *** *
1568338 CGGTTCGGTCCCAATCAACTTTCTATCCTTTGTTAACCTATCTGCTTAGTCCTGGGTAAATTTTT
66 CGATTCAATCCCAATCAACTTTCTATCCCTTATTAACCTATCTGCTTAGTCCCAAGTAAATCTTT
1568403 TATCCTCTGTTGACTCATTAGTTCAGTCCTAGTCAA
131 TATCCTCTGTTGACTCATTAGTTCAGTCCTAGTCAA
** *
1568439 CTTTTTATCCCTTGTTAACCTGTTGGCTTAGTCCCGGGTAAATTTTTTATCATTTGTTGACTCAT
1 CTTTTTATCCCTTGTTAACCTGTCAGCTTAGTCCCGGGTAAATTTTGTATCATTTGTTGACTCAT
* * * * *
1568504 CGATTCAATCCTAGTCAACTTTTTATCCCTTATTTACTTAT-TGGCTTAGTCCCAAGTAAATCTT
66 CGATTCAATCCCAATCAACTTTCTATCCCTTATTAACCTATCT-GCTTAGTCCCAAGTAAATCTT
* *
1568568 TTATCTTGTGTTGA
130 TTATCCTCTGTTGA
1568582 TTCGCCAGTT
Statistics
Matches: 120, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
165 1 0.01
166 119 0.99
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (166 bp):
CTTTTTATCCCTTGTTAACCTGTCAGCTTAGTCCCGGGTAAATTTTGTATCATTTGTTGACTCAT
CGATTCAATCCCAATCAACTTTCTATCCCTTATTAACCTATCTGCTTAGTCCCAAGTAAATCTTT
TATCCTCTGTTGACTCATTAGTTCAGTCCTAGTCAA
Found at i:1571248 original size:13 final size:13
Alignment explanation
Indices: 1571230--1571255 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1571220 ACAAAGATCC
1571230 ATGTATCGATACA
1 ATGTATCGATACA
1571243 ATGTATCGATACA
1 ATGTATCGATACA
1571256 TTGAGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1571315 original size:13 final size:13
Alignment explanation
Indices: 1571293--1571350 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
1571283 GGCAGTAGCT
*
1571293 TTGTAGCGATACA
1 TTGTATCGATACA
1571306 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
1571322 CTTACGTATCGATACA
1 -TT--GTATCGATACA
1571338 TTGTATCGATACA
1 TTGTATCGATACA
1571351 ACACTTACGT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 20 0.53
15 2 0.05
16 6 0.16
17 2 0.05
19 8 0.21
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1571332 original size:19 final size:19
Alignment explanation
Indices: 1571308--1571388 Score: 111
Period size: 19 Copynumber: 4.6 Consensus size: 19
1571298 GCGATACATT
1571308 GTATCGATACAACACTTAC
1 GTATCGATACAACACTTAC
1571327 GTATCGAT---ACA-TT--
1 GTATCGATACAACACTTAC
1571340 GTATCGATACAACACTTAC
1 GTATCGATACAACACTTAC
*
1571359 GTATCGATACAACACTTAT
1 GTATCGATACAACACTTAC
1571378 GTATCGATACA
1 GTATCGATACA
1571389 GTTACTATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
13 8 0.15
15 2 0.04
16 6 0.11
17 2 0.04
19 37 0.67
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (19 bp):
GTATCGATACAACACTTAC
Found at i:1571340 original size:32 final size:32
Alignment explanation
Indices: 1571299--1571369 Score: 142
Period size: 32 Copynumber: 2.2 Consensus size: 32
1571289 AGCTTTGTAG
1571299 CGATACATTGTATCGATACAACACTTACGTAT
1 CGATACATTGTATCGATACAACACTTACGTAT
1571331 CGATACATTGTATCGATACAACACTTACGTAT
1 CGATACATTGTATCGATACAACACTTACGTAT
1571363 CGATACA
1 CGATACA
1571370 ACACTTATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTACGTAT
Found at i:1572257 original size:49 final size:49
Alignment explanation
Indices: 1572138--1572936 Score: 591
Period size: 49 Copynumber: 16.9 Consensus size: 49
1572128 ATGAGAAGAA
* * * ** *
1572138 TGCCAATGTGCTGATTCAAGGCCAACGACATTAGGTTTTAAAGATGACGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAT---GAAGG
* *
1572191 CGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
1572240 TGCCAATGTGCTGATTCACGGGCAGCGACATTGGACTTAAAGATGACGATGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--A-GG
* * *
1572292 TGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAGGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
1572341 TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-ATG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
1572389 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTTAAGATGGTTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGG
* * * * * * * *
1572441 TGTCGATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
1572490 TGCCAATATGCTGATTCAAGGCCAGCAATACTGGGC-T-----T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * *
1572529 TGCCAATGTGTTGATTCAAGGCTAGCGACATTGGTCTTAAAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
1572577 TGCCAATATGCTGATTCAAGGCCAGTGATATTGGGC-T-----T--A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * *
1572616 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * *
1572665 TGCCAATATGTTGATTCAAGGCCTGTGATACTGG-------GCT---GG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * *
1572704 TGCCAATGTGCTGATTCAAGGCCCGCAACATTGGTCTTAAAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
*
1572752 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TCAAGATTGAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-TG--AAGG
1572803 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * **
1572846 TGCCAATGTGCTGATTCAAGGCGAGTGACA-TCGATCTCGAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGA-CTTAAAGATGAAGG
*
1572895 TGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1572937 GTGCCACGGA
Statistics
Matches: 588, Mismatches: 107, Indels: 106
0.73 0.13 0.13
Matches are distributed among these distances:
39 90 0.15
40 2 0.00
41 1 0.00
42 5 0.01
43 33 0.06
45 1 0.00
46 1 0.00
47 8 0.01
48 107 0.18
49 178 0.30
50 4 0.01
51 41 0.07
52 90 0.15
53 27 0.05
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
Found at i:1572307 original size:101 final size:96
Alignment explanation
Indices: 1572138--1572844 Score: 648
Period size: 101 Copynumber: 7.4 Consensus size: 96
1572128 ATGAGAAGAA
* * ** *
1572138 TGCCAATGTGCTGATTCAAGGCCAACGACATTAGGTTTTAAAGATGACGAAGACGCCAATATGTT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGATGAC-AAGGTGCCAATATGCT
1572203 GATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
64 GATTCAAGGCCAGCGATATTGGAC-T--AGATG-AGG
* * * *
1572240 TGCCAATGTGCTGATTCACGGGCAGCGACATTGGACTTAAAGATGACGATGGTGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAC-AAGGTGCCAATATGCTG
* *
1572305 ATTCAAGGCCAACAATATTGGACTTAAGGATGAAGG
65 ATTCAAGGCCAGCGATATTGGAC-T-A-GATG-AGG
* * *
1572341 TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---ATGTGCCAATATGCTGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAGGTGCCAATATGCTGA
*
1572403 TTCAAGGCCAGCGATATTGGGCTTTAAGATGGTTGAGG
66 TTCAAGGCCAGCGATATTGGAC--T-AGA----TGAGG
* * * *
1572441 TGTCGATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGAT-A-AAGGTGCCAATATGCTGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAGGTGCCAATATGCTGA
* * *
1572504 TTCAAGGCCAGCAATACTGGGCT---T---G
66 TTCAAGGCCAGCGATATTGGACTAGATGAGG
* *
1572529 TGCCAATGTGTTGATTCAAGGCTAGCGACATTGGTCTT-AA-A-GACAAGGTGCCAATATGCTGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAGGTGCCAATATGCTGA
* *
1572591 TTCAAGGCCAGTGATATTGGGCT---T-A--
66 TTCAAGGCCAGCGATATTGGACTAGATGAGG
* *
1572616 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGAT-A-AAGGTGCCAATATGTTGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAGGTGCCAATATGCTGA
* * * *
1572679 TTCAAGGCCTGTGATACTGG----GCT--GG
66 TTCAAGGCCAGCGATATTGGACTAGATGAGG
* *
1572704 TGCCAATGTGCTGATTCAAGGCCCGCAACATTGGTCTT-AA-A-GACAAGGTGCCAATATGCTGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAGGTGCCAATATGCTGA
1572766 TTCAAGGCCAGCGATATTGGACTCAAGATTGAAAAGG
66 TTCAAGGCCAGCGATATTGGACT--AGA-TG---AGG
* * *
1572803 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
1572845 GTGCCAATGT
Statistics
Matches: 517, Mismatches: 54, Indels: 69
0.81 0.08 0.11
Matches are distributed among these distances:
86 4 0.01
87 115 0.22
88 105 0.20
89 2 0.00
91 1 0.00
93 1 0.00
94 1 0.00
97 36 0.07
98 4 0.01
99 36 0.07
100 45 0.09
101 138 0.27
102 29 0.06
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (96 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAGGTGCCAATATGCTGA
TTCAAGGCCAGCGATATTGGACTAGATGAGG
Found at i:1572612 original size:87 final size:88
Alignment explanation
Indices: 1572446--1572781 Score: 505
Period size: 87 Copynumber: 3.8 Consensus size: 88
1572436 TGAGGTGTCG
* *
1572446 ATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
*
1572511 CCAGCAATACTGGGCTTGTGCCA
66 CCAGCGATACTGGGCTTGTGCCA
* * *
1572534 ATGTGTTGATTCAAGGCTAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGG
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
* * *
1572598 CCAGTGATATTGGGCTTATGCCA
66 CCAGCGATACTGGGCTTGTGCCA
* *
1572621 ATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTTGATTCAAGG
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
* * *
1572686 CCTGTGATACTGGGCTGGTGCCA
66 CCAGCGATACTGGGCTTGTGCCA
* * *
1572709 ATGTGCTGATTCAAGGCCCGCAACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGG
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
1572773 CCAGCGATA
66 CCAGCGATA
1572782 TTGGACTCAA
Statistics
Matches: 224, Mismatches: 23, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
87 112 0.50
88 112 0.50
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (88 bp):
ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGG
CCAGCGATACTGGGCTTGTGCCA
Found at i:1572649 original size:39 final size:39
Alignment explanation
Indices: 1572577--1572654 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
1572567 AAAGACAAGG
* *
1572577 TGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
* * *
1572616 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
1572655 AAGATAAAGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
Done.