Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold129
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3652842
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 48564 characters in sequence are not A, C, G, or T
File 6 of 23
Found at i:793356 original size:20 final size:20
Alignment explanation
Indices: 793331--793497 Score: 124
Period size: 20 Copynumber: 7.8 Consensus size: 20
793321 GTAAAAAGAT
793331 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
793351 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
793371 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
793391 AAAATGTATCGATATATATGGGTAAAA
1 AGAATGTATCGATACAT-T--G----A
*
793418 AGACAAAATGTATCGACACATTGA
1 AG----AATGTATCGATACATTGA
*
793442 AGAATG-ATCGATACATTTA
1 AGAATGTATCGATACATTGA
*
793461 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
*
793481 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
793498 CTAGGTAAAA
Statistics
Matches: 118, Mismatches: 13, Indels: 32
0.72 0.08 0.20
Matches are distributed among these distances:
19 16 0.14
20 79 0.67
21 2 0.02
23 1 0.01
24 3 0.03
27 2 0.02
28 1 0.01
30 1 0.01
31 13 0.11
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:793493 original size:90 final size:91
Alignment explanation
Indices: 793283--793507 Score: 328
Period size: 91 Copynumber: 2.5 Consensus size: 91
793273 TTTTAACTAG
** * * * * *
793283 ATGTATCGATACATT-ATTCAATGTATCGATACGTCTAGGTAAAAAGATAGAATGTATCGATACA
1 ATGTATCGATACATTGA-AAAATGTATCGATACATATAGGTAAAAAGACAAAATGTATCGACACA
793347 TTGAAGAATGTATCGATACATTCATAC
65 TTGAAGAATGTATCGATACATTCATAC
* *
793374 ATGTATCGATACATTGAAAAATGTATCGATATATATGGGTAAAAAGACAAAATGTATCGACACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATATAGGTAAAAAGACAAAATGTATCGACACAT
*
793439 TGAAGAATG-ATCGATACATTTATAC
66 TGAAGAATGTATCGATACATTCATAC
*
793464 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATATAGGTAAAA
793508 GTGTGACTTT
Statistics
Matches: 120, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
90 56 0.47
91 63 0.52
92 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.30
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATATAGGTAAAAAGACAAAATGTATCGACACAT
TGAAGAATGTATCGATACATTCATAC
Found at i:804083 original size:42 final size:42
Alignment explanation
Indices: 803887--804079 Score: 181
Period size: 42 Copynumber: 4.6 Consensus size: 42
803877 CTTCTCTTTC
* **
803887 AGTCTGCTTATCGATTTTGACCCTAGAGACTACCTCATCTAA
1 AGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTAA
* * * * * *
803929 AGTCTGCTTGTCAGTTTTGACCTTGGAGACTACCTCATCTAA
1 AGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTAA
* * * * * * * * **
803971 AGTCTACCTGTCAGCTTTAACCTTGGAGACTTTCCTC-CCTTT
1 AGTCTGCCTATCGGCTTTGACCCTAGAGAC-TACCTCATCTAA
* *
804013 AGTCTGCCTATCGGCTTTGACCCTAAAGACTACCACATCTAA
1 AGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTAA
804055 AGTCTGCCTATCGGCTTTGACCCTA
1 AGTCTGCCTATCGGCTTTGACCCTA
804080 AAGAATTTCC
Statistics
Matches: 124, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
41 4 0.03
42 115 0.93
43 5 0.04
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.33
Consensus pattern (42 bp):
AGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTAA
Found at i:804156 original size:42 final size:42
Alignment explanation
Indices: 803996--804172 Score: 151
Period size: 42 Copynumber: 4.2 Consensus size: 42
803986 TTTAACCTTG
* *
803996 GAGACTTTCCTCCCTTTAGTCTGCCTATCGGCTTTGACCCTA
1 GAGATTTTCCTCCCTTCAGTCTGCCTATCGGCTTTGACCCTA
* * * * * **
804038 AAGA-CTACCACATCTAAAGTCTGCCTATCGGCTTTGACCCTA
1 GAGATTTTCCTC-CCTTCAGTCTGCCTATCGGCTTTGACCCTA
* * ** * * **
804080 AAGAATTTCC-AACTTCAGTCTGTCTGTCAACTTTGACCCTA
1 GAGATTTTCCTCCCTTCAGTCTGCCTATCGGCTTTGACCCTA
* *
804121 GAGATTTTCCTCCCTTCAGTCTGCCTGTCGCCTTTGACCCTA
1 GAGATTTTCCTCCCTTCAGTCTGCCTATCGGCTTTGACCCTA
804163 GAGACTTTTC
1 GAGA-TTTTC
804173 AACTTTTAAT
Statistics
Matches: 107, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
41 35 0.33
42 64 0.60
43 8 0.07
ACGTcount: A:0.20, C:0.31, G:0.15, T:0.33
Consensus pattern (42 bp):
GAGATTTTCCTCCCTTCAGTCTGCCTATCGGCTTTGACCCTA
Found at i:804225 original size:84 final size:83
Alignment explanation
Indices: 804055--804225 Score: 198
Period size: 84 Copynumber: 2.0 Consensus size: 83
804045 CCACATCTAA
* * **
804055 AGTCTGCCTATCGGCTTTGACCCTAAAGAATTTCCAACTTCAGTCTGTCTGTCAACTTTGACCCT
1 AGTCTGCCTATCGCCTTTGACCCTAAAGAATTTCCAACTTCAATCTACCTGTCAACTTTGACCCT
*
804120 AGAGATTTTCCTCCCTTC
66 AGAGATTTTCCTACCTTC
* * * * * * * *
804138 AGTCTGCCTGTCGCCTTTGACCCTAGAGACTTTTCAACTTTTAATCTACCTGTTAGCTTTGACCT
1 AGTCTGCCTATCGCCTTTGACCCTAAAGAATTTCCAAC-TTCAATCTACCTGTCAACTTTGACCC
* *
804203 TGGAGATTTTCCTACTTTC
65 TAGAGATTTTCCTACCTTC
804222 AGTC
1 AGTC
804226 CGCCGGCATT
Statistics
Matches: 72, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
83 33 0.46
84 39 0.54
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.37
Consensus pattern (83 bp):
AGTCTGCCTATCGCCTTTGACCCTAAAGAATTTCCAACTTCAATCTACCTGTCAACTTTGACCCT
AGAGATTTTCCTACCTTC
Found at i:804339 original size:84 final size:85
Alignment explanation
Indices: 804234--804417 Score: 205
Period size: 84 Copynumber: 2.2 Consensus size: 85
804224 TCCGCCGGCA
* * *
804234 TTGACCCTAGAA-ACTACTTCATCTAAAATTTTCTTGTC-AGCTTTGACCCTAGACACTTTCTTA
1 TTGACCCTA-AAGACTACTTCATCTAAAATCTGCTTGTCGA-CTTTGAACCTAGACACTTTCTTA
*
804297 -CTTTCAGTCAG-TCTGTCAGCT
64 CCCTTCAGTCAGCT-TGTCAGCT
* * * * *
804318 TTGACCCTAAAGACTGCTTCATCTAAAGTCTGCTTGTCGACTTTGAACTTGGAGACTTTCTTACC
1 TTGACCCTAAAGACTACTTCATCTAAAATCTGCTTGTCGACTTTGAACCTAGACACTTTCTTACC
** *
804383 CTTCAGTTTGCTTGTCAGTT
66 CTTCAGTCAGCTTGTCAGCT
804403 TTGACCCTAAAGACT
1 TTGACCCTAAAGACT
804418 TTCCTACTTT
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
83 2 0.02
84 50 0.60
85 31 0.37
86 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (85 bp):
TTGACCCTAAAGACTACTTCATCTAAAATCTGCTTGTCGACTTTGAACCTAGACACTTTCTTACC
CTTCAGTCAGCTTGTCAGCT
Found at i:804500 original size:127 final size:127
Alignment explanation
Indices: 804266--804508 Score: 335
Period size: 127 Copynumber: 1.9 Consensus size: 127
804256 CTAAAATTTT
* * *
804266 CTTGTCAGCTTTGACCCTAGACACTTTCTTACTTTCAGTCAGTCTGTCAGCTTTGACCCTAAAGA
1 CTTGTCAGCTTTGACCCTAAACACTTTCCTACTTTCAGTCACTCTGTCAGCTTTGACCCTAAAGA
* * *
804331 CTGCTTCATCTAAAGTCTGCTTGTCGACTTTGAACTTGGAGACTTTCTTACCCTTCAGTTTG
66 CTGCCTCATCTAAAGTCTGCTTGTCGACTTTGAACCTAGAGACTTTCTTACCCTTCAGTTTG
* * ** * **
804393 CTTGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACT-TGTTGGCTTTGACCTTGGAG
1 CTTGTCAGCTTTGACCCTAAACACTTTCCTACTTTCAGTC-ACTCTGTCAGCTTTGACCCTAAAG
* *
804457 ACTGCCTCATCTAAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCTTAC
65 ACTGCCTCATCTAAAGTCTGCTTGTCGACTTTGAACCTAGAGACTTTCTTAC
804509 TTTTAGTCTG
Statistics
Matches: 100, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
127 98 0.98
128 2 0.02
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (127 bp):
CTTGTCAGCTTTGACCCTAAACACTTTCCTACTTTCAGTCACTCTGTCAGCTTTGACCCTAAAGA
CTGCCTCATCTAAAGTCTGCTTGTCGACTTTGAACCTAGAGACTTTCTTACCCTTCAGTTTG
Found at i:804585 original size:42 final size:41
Alignment explanation
Indices: 804442--804576 Score: 146
Period size: 42 Copynumber: 3.2 Consensus size: 41
804432 CTACTTGTTG
* * * *
804442 GCTTTGACCTTGGAGACTGCCTCATCTAAAGTCTGCTTGTC
1 GCTTTGACCCTAGAGACTGCCTTATCTAAAGTCTGCCTGTC
** **
804483 GGCTTTGACCCTAGAGACTTTCTTA-CTTTTAGTCTGCCTGTC
1 -GCTTTGACCCTAGAGACTGCCTTATC-TAAAGTCTGCCTGTC
*
804525 GACTTTGACCCTAGAGACTGCCTTATCTAAAGTCTACCTGTC
1 G-CTTTGACCCTAGAGACTGCCTTATCTAAAGTCTGCCTGTC
804567 AGCTTTGACC
1 -GCTTTGACC
804577 TTGAAGACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 8
0.78 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 72 0.95
43 2 0.03
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (41 bp):
GCTTTGACCCTAGAGACTGCCTTATCTAAAGTCTGCCTGTC
Found at i:804601 original size:42 final size:41
Alignment explanation
Indices: 803970--804601 Score: 145
Period size: 42 Copynumber: 15.1 Consensus size: 41
803960 ACCTCATCTA
* * * *
803970 AAGTCTACCTGTCAGCTTTAACCTTGGAGACTTTCCTCCCTTT
1 AAGTCTACCTGTCAGCTTTGACCCT-AAGACTTTCCT-ACTTT
* * * * *
804013 -AGTCTGCCTATCGGCTTTGACCCTAAAGAC-TACC-ACATCTA
1 AAGTCTACCTGTCAGCTTTGACCCT-AAGACTTTCCTAC-T-TT
* * * * *
804054 AAGTCTGCCTATCGGCTTTGACCCTAAAGAATTTCCAAC-TT
1 AAGTCTACCTGTCAGCTTTGACCCT-AAGACTTTCCTACTTT
* ** * * * *
804095 CAGTCTGTCTGTCAACTTTGACCCTAGAGATTTTCCTCCCTT
1 AAGTCTACCTGTCAGCTTTGACCCTA-AGACTTTCCTACTTT
* * * *
804137 CAGTCTGCCTGTC-GCCTTTGACCCTAGAGACTTTTCAACTTTT
1 AAGTCTACCTGTCAG-CTTTGACCCTA-AGACTTTCCTAC-TTT
* * * *
804180 AA-TCTACCTGTTAGCTTTGACCTTGGAGATTTTCCTACTTT
1 AAGTCTACCTGTCAGCTTTGACCCT-AAGACTTTCCTACTTT
* * * * * * *
804221 CAG--T-CC-GCCGGCATTGACCCTAGAAACTACTTCAT-C-TA
1 AAGTCTACCTGTCAGCTTTGACCCTA-AGACT--TTCCTACTTT
* * * * * *
804259 AAATTTTCTTGTCAGCTTTGACCCTAGACACTTTCTTACTTT
1 AAGTCTACCTGTCAGCTTTGACCCTA-AGACTTTCCTACTTT
* * * *
804301 CAGTC-AGTCTGTCAGCTTTGACCCTAAAGACTGCTTCAT-C-TA
1 AAGTCTA-CCTGTCAGCTTTGACCCT-AAGACT--TTCCTACTTT
* * * * * * *
804343 AAGTCTGCTTGTC-GACTTTGAACTTGGAGACTTTCTTACCCTT
1 AAGTCTACCTGTCAG-CTTTGACCCT-AAGACTTTCCTA-CTTT
* * * * *
804386 CAGTTTGCTTGTCAGTTTTGACCCTAAAGACTTTCCTACTTT
1 AAGTCTACCTGTCAGCTTTGACCCT-AAGACTTTCCTACTTT
* * ** * * * *
804428 CAGTCTACTTGTTGGCTTTGACCTTGGAGAC-TGCCT-CATCTA
1 AAGTCTACCTGTCAGCTTTGACCCT-AAGACTTTCCTAC-T-TT
* * * *
804470 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCTTACTTT
1 AAGTCTACCTGTCAGCTTTGACCCTA-AGACTTTCCTACTTT
* * * *
804512 TAGTCTGCCTGTC-GACTTTGACCCTAGAGAC-TGCCTTA-TCTA
1 AAGTCTACCTGTCAG-CTTTGACCCTA-AGACTTTCC-TACT-TT
*
804554 AAGTCTACCTGTCAGCTTTGACCTTGAAGACTTTCCTACTTT
1 AAGTCTACCTGTCAGCTTTGACCCT-AAGACTTTCCTACTTT
*
804596 TAGTCT
1 AAGTCT
804602 GCTTACCGGC
Statistics
Matches: 433, Mismatches: 113, Indels: 87
0.68 0.18 0.14
Matches are distributed among these distances:
38 15 0.03
39 4 0.01
40 17 0.04
41 50 0.12
42 291 0.67
43 48 0.11
44 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (41 bp):
AAGTCTACCTGTCAGCTTTGACCCTAAGACTTTCCTACTTT
Found at i:804647 original size:84 final size:83
Alignment explanation
Indices: 804395--804681 Score: 326
Period size: 84 Copynumber: 3.4 Consensus size: 83
804385 TCAGTTTGCT
* * * * *
804395 TGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACTTGTTGGCTTTGACCTTGGAGACT
1 TGTCAGCTTTGACCCTGAAGACTTTCCTACTTTTAGTCTGCTTGTCGGCTTTGACC-TGGAGACT
* *
804460 GCCTCATCTAAAGTCTGCT
65 GCCTCATCTAAAGTCTACC
* * * * *
804479 TGTCGGCTTTGACCCT-AGAGACTTTCTTACTTTTAGTCTGCCTGTCGACTTTGACCCTAGAGAC
1 TGTCAGCTTTGACCCTGA-AGACTTTCCTACTTTTAGTCTGCTTGTCGGCTTTGA-CCTGGAGAC
*
804543 TGCCTTATCTAAAGTCTACC
64 TGCCTCATCTAAAGTCTACC
* **
804563 TGTCAGCTTTGACCTTGAAGACTTTCCTACTTTTAGTCTGCTTACCGGCTTTGAGCCTGGAGACT
1 TGTCAGCTTTGACCCTGAAGACTTTCCTACTTTTAGTCTGCTTGTCGGCTTTGA-CCTGGAGACT
*
804628 GCCTCATCTAAAGTTTACC
65 GCCTCATCTAAAGTCTACC
* * * *
804647 TATCAACTTTGACCTTGGAA-ACTTTCCTACCTTTA
1 TGTCAGCTTTGACCCT-GAAGACTTTCCTACTTTTA
804682 ATCGGCTTTC
Statistics
Matches: 173, Mismatches: 26, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
83 1 0.01
84 166 0.96
85 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (83 bp):
TGTCAGCTTTGACCCTGAAGACTTTCCTACTTTTAGTCTGCTTGTCGGCTTTGACCTGGAGACTG
CCTCATCTAAAGTCTACC
Found at i:804787 original size:42 final size:43
Alignment explanation
Indices: 804717--804870 Score: 122
Period size: 42 Copynumber: 3.7 Consensus size: 43
804707 CTACCTTCAG
*
804717 TCTGCCTATC-AGTTTTGACTCT-GAAGACTACCTCACCTAAAA
1 TCTGCCTATCGA-TTTTGACCCTAGAAGACTACCTCACCTAAAA
* ** * **
804759 TCTGCCTATCGGTTTTGACCCTAG-AGACTTTCTTACTCTTCAA
1 TCTGCCTATCGATTTTGACCCTAGAAGACTACCTCAC-CTAAAA
* * * * *
804802 T-TGGCTTATCGATTTTGA-CCTTGAAGACTGCTTCACCTAAAG
1 TCT-GCCTATCGATTTTGACCCTAGAAGACTACCTCACCTAAAA
*
804844 TCTGCCTATCGACTTTGACCCTA-AAGA
1 TCTGCCTATCGATTTTGACCCTAGAAGA
804871 ATTTCCAACT
Statistics
Matches: 85, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
42 54 0.64
43 31 0.36
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (43 bp):
TCTGCCTATCGATTTTGACCCTAGAAGACTACCTCACCTAAAA
Found at i:804829 original size:85 final size:84
Alignment explanation
Indices: 804682--804876 Score: 225
Period size: 85 Copynumber: 2.3 Consensus size: 84
804672 CCTACCTTTA
* * *
804682 ATCGGCTTTCACCCTAGCGACTTTCCTACCTTCAGTCTGCCTATCAGTTTTGACTCTGAAGACTA
1 ATCGGCTTTGACCCTAGAGACTTTCCTACCTTCAATCTGCCTATCAGTTTTGACTCTGAAGACTA
804747 CCTCACCTAAAATCTGCCT
66 CCTCACCTAAAATCTGCCT
* * *
804766 ATCGGTTTTGACCCTAGAGACTTTCTTACTCTTCAAT-TGGCTTATC-GATTTTGAC-CTTGAAG
1 ATCGGCTTTGACCCTAGAGACTTTCCTAC-CTTCAATCT-GCCTATCAG-TTTTGACTC-TGAAG
* * *
804828 ACTGCTTCACCTAAAGTCTGCCT
62 ACTACCTCACCTAAAATCTGCCT
* * *
804851 ATCGACTTTGACCCTAAAGAATTTCC
1 ATCGGCTTTGACCCTAGAGACTTTCC
804877 AACTTCAGTC
Statistics
Matches: 93, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
84 28 0.30
85 65 0.70
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (84 bp):
ATCGGCTTTGACCCTAGAGACTTTCCTACCTTCAATCTGCCTATCAGTTTTGACTCTGAAGACTA
CCTCACCTAAAATCTGCCT
Found at i:804948 original size:42 final size:41
Alignment explanation
Indices: 804842--804964 Score: 140
Period size: 41 Copynumber: 3.0 Consensus size: 41
804832 CTTCACCTAA
* * *
804842 AGTCTGCCTATCGACTTTGACCCTAAAGAATTTCCAACTTC
1 AGTCTGCCTGTCGACTTTGACCCTAGAGATTTTCCAACTTC
* * **
804883 AGTCTGTCTGTCAACTTTGACCCTAGAGATTTTCCTCCCTTC
1 AGTCTGCCTGTCGACTTTGACCCTAGAGATTTTCC-AACTTC
* *
804925 AGTCTGCCTGTCGCCTTTAACCCTAGAGACTTTT-CAACTT
1 AGTCTGCCTGTCGACTTTGACCCTAGAGA-TTTTCCAACTT
804965 TTAATCTACC
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
41 33 0.49
42 30 0.45
43 4 0.06
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (41 bp):
AGTCTGCCTGTCGACTTTGACCCTAGAGATTTTCCAACTTC
Found at i:805220 original size:85 final size:84
Alignment explanation
Indices: 805097--805428 Score: 281
Period size: 84 Copynumber: 3.9 Consensus size: 84
805087 TCAGTCAGTC
* *
805097 TGTCAGCTTTGACCCTAAAGACTGCTTCAT-C-TAAAGTCTGTTTGTCGACTTTGAACTTGGAGA
1 TGTCAGCTTTGACCCTAAAGACT--TTCATACTTTAAGTCTGCTTGTCGACTTTGAACTTGGAGA
** * ** *
805160 CTTTCTTACCCTTCAGTTTGCT
64 CTGCCTCA-CCTAAAGTCTGCT
* * * * * * *
805182 TGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACTTGTTGCCTTTGACCTTGGAGACT
1 TGTCAGCTTTGACCCTAAAGACTTTCATACTTTAAGTCTGCTTGTCGACTTTGAACTTGGAGACT
*
805247 GCCTCATCTAAAGTCTGCT
66 GCCTCACCTAAAGTCTGCT
* * * * * * * *
805266 TGTCGGCTTTGACCCTAGAGACTTTCTTACTTTTAGTCTGCCTGTCGACTTTGACCCTAGAGACT
1 TGTCAGCTTTGACCCTAAAGACTTTCATACTTTAAGTCTGCTTGTCGACTTTGAACTTGGAGACT
* * * *
805331 GCCTTATCTAAAGTCTACC
66 GCCTCACCTAAAGTCTGCT
* * * * ** * * *
805350 TGTCAGCTTTGACCTTGAAGACTTTCCTACTTTTAGTCTGCTTACCGGCTTTGAGCCTGGAGACT
1 TGTCAGCTTTGACCCTAAAGACTTTCATACTTTAAGTCTGCTTGTCGACTTTGAACTTGGAGACT
*
805415 GCCTCATCTAAAGT
66 GCCTCACCTAAAGT
805429 TTACCTATCA
Statistics
Matches: 203, Mismatches: 42, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
83 4 0.02
84 147 0.72
85 52 0.26
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (84 bp):
TGTCAGCTTTGACCCTAAAGACTTTCATACTTTAAGTCTGCTTGTCGACTTTGAACTTGGAGACT
GCCTCACCTAAAGTCTGCT
Found at i:805235 original size:42 final size:42
Alignment explanation
Indices: 804841--805392 Score: 185
Period size: 42 Copynumber: 13.2 Consensus size: 42
804831 GCTTCACCTA
* * * * *
804841 AAGTCTGCCTATCGACTTTGACCCTAAAGAATTTCCAAC-TT
1 AAGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTACTTT
* * * * *
804882 CAGTCTG-TCTGTCAACTTTGACCCTAGAGATTTTCCTCCCTT
1 AAGTCTGCT-TGTCGACTTTGACCCTAGAGACTTTCCTACTTT
* * * * * *
804924 CAGTCTGCCTGTCGCCTTTAACCCTAGAGACTTTTCAACTTTT
1 AAGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTAC-TTT
* * * * * *
804967 AA-TCTACCTGT-TAGCTTTGACCTTGGAGATTTTCCTACTTT
1 AAGTCTGCTTGTCGA-CTTTGACCCTAGAGACTTTCCTACTTT
* * * * * * *
805008 CAGTC--C--GCCGGCATTGACCCTAGAAACTACTTCAT-C-TA
1 AAGTCTGCTTGTCGACTTTGACCCTAGAGACT--TTCCTACTTT
* * * * *
805046 AAATTTTCTTGTC-AGCTTTGACCCTAGACACTTTCTTACTTT
1 AAGTCTGCTTGTCGA-CTTTGACCCTAGAGACTTTCCTACTTT
* * * * *
805088 CAGTCAG-TCTGTC-AGCTTTGACCCTAAAGACTGCTTCAT-C-TA
1 AAGTCTGCT-TGTCGA-CTTTGACCCTAGAGACT--TTCCTACTTT
* * * * * *
805130 AAGTCTGTTTGTCGACTTTGAACTTGGAGACTTTCTTACCCTT
1 AAGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTA-CTTT
* * * *
805173 CAGTTTGCTTGTC-AGTTTTGACCCTAAAGACTTTCCTACTTT
1 AAGTCTGCTTGTCGA-CTTTGACCCTAGAGACTTTCCTACTTT
* * * * * * * *
805215 CAGTCTACTTGTTGCCTTTGACCTTGGAGAC-TGCCT-CATCTA
1 AAGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTAC-T-TT
* *
805257 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCTTACTTT
1 AAGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTACTTT
* * * *
805299 TAGTCTGCCTGTCGACTTTGACCCTAGAGAC-TGCCTTA-TCTA
1 AAGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCC-TACT-TT
* * *
805341 AAGTCTACCTGTC-AGCTTTGA-CCTTGAAGACTTTCCTACTTT
1 AAGTCTGCTTGTCGA-CTTTGACCCTAG-AGACTTTCCTACTTT
*
805383 TAGTCTGCTT
1 AAGTCTGCTT
805393 ACCGGCTTTG
Statistics
Matches: 368, Mismatches: 107, Indels: 71
0.67 0.20 0.13
Matches are distributed among these distances:
38 16 0.04
39 1 0.00
40 15 0.04
41 49 0.13
42 240 0.65
43 42 0.11
44 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.38
Consensus pattern (42 bp):
AAGTCTGCTTGTCGACTTTGACCCTAGAGACTTTCCTACTTT
Found at i:805287 original size:127 final size:127
Alignment explanation
Indices: 805053--805295 Score: 319
Period size: 127 Copynumber: 1.9 Consensus size: 127
805043 CTAAAATTTT
* * *
805053 CTTGTCAGCTTTGACCCTAGACACTTTCTTACTTTCAGTCAGTCTGTCAGCTTTGACCCTAAAGA
1 CTTGTCAGCTTTGACCCTAAACACTTTCCTACTTTCAGTCACTCTGTCAGCTTTGACCCTAAAGA
* * * *
805118 CTGCTTCATCTAAAGTCTGTTTGTCGACTTTGAACTTGGAGACTTTCTTACCCTTCAGTTTG
66 CTGCCTCATCTAAAGTCTGCTTGTCGACTTTGAACCTAGAGACTTTCTTACCCTTCAGTTTG
* * * * **
805180 CTTGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACT-TGT-TGCCTTTGACCTTGGA
1 CTTGTCAGCTTTGACCCTAAACACTTTCCTACTTTCAGTC-ACTCTGTCAG-CTTTGACCCTAAA
* *
805243 GACTGCCTCATCTAAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCTTAC
64 GACTGCCTCATCTAAAGTCTGCTTGTCGACTTTGAACCTAGAGACTTTCTTAC
805296 TTTTAGTCTG
Statistics
Matches: 99, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
126 1 0.01
127 96 0.97
128 2 0.02
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (127 bp):
CTTGTCAGCTTTGACCCTAAACACTTTCCTACTTTCAGTCACTCTGTCAGCTTTGACCCTAAAGA
CTGCCTCATCTAAAGTCTGCTTGTCGACTTTGAACCTAGAGACTTTCTTACCCTTCAGTTTG
Found at i:805434 original size:84 final size:83
Alignment explanation
Indices: 805182--805468 Score: 317
Period size: 84 Copynumber: 3.4 Consensus size: 83
805172 TCAGTTTGCT
* * * * * *
805182 TGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACTTGTTGCCTTTGACCTTGGAGACT
1 TGTCAGCTTTGACCCTGAAGACTTTCCTACTTTTAGTCTGCTTGTCGACTTTGACC-TGGAGACT
* *
805247 GCCTCATCTAAAGTCTGCT
65 GCCTCATCTAAAGTCTACC
* * * *
805266 TGTCGGCTTTGACCCT-AGAGACTTTCTTACTTTTAGTCTGCCTGTCGACTTTGACCCTAGAGAC
1 TGTCAGCTTTGACCCTGA-AGACTTTCCTACTTTTAGTCTGCTTGTCGACTTTGA-CCTGGAGAC
*
805330 TGCCTTATCTAAAGTCTACC
64 TGCCTCATCTAAAGTCTACC
* ** *
805350 TGTCAGCTTTGACCTTGAAGACTTTCCTACTTTTAGTCTGCTTACCGGCTTTGAGCCTGGAGACT
1 TGTCAGCTTTGACCCTGAAGACTTTCCTACTTTTAGTCTGCTTGTCGACTTTGA-CCTGGAGACT
*
805415 GCCTCATCTAAAGTTTACC
65 GCCTCATCTAAAGTCTACC
* * * *
805434 TATCAACTTTGACCTTGGAA-ACTTTCCTACCTTTA
1 TGTCAGCTTTGACCCT-GAAGACTTTCCTACTTTTA
805469 ATCGGCTTTC
Statistics
Matches: 173, Mismatches: 26, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
83 1 0.01
84 166 0.96
85 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (83 bp):
TGTCAGCTTTGACCCTGAAGACTTTCCTACTTTTAGTCTGCTTGTCGACTTTGACCTGGAGACTG
CCTCATCTAAAGTCTACC
Found at i:805541 original size:787 final size:787
Alignment explanation
Indices: 804051--805653 Score: 3170
Period size: 787 Copynumber: 2.0 Consensus size: 787
804041 ACTACCACAT
*
804051 CTAAAGTCTGCCTATCGGCTTTGACCCTAAAGAATTTCCAACTTCAGTCTGTCTGTCAACTTTGA
1 CTAAAGTCTGCCTATCGACTTTGACCCTAAAGAATTTCCAACTTCAGTCTGTCTGTCAACTTTGA
*
804116 CCCTAGAGATTTTCCTCCCTTCAGTCTGCCTGTCGCCTTTGACCCTAGAGACTTTTCAACTTTTA
66 CCCTAGAGATTTTCCTCCCTTCAGTCTGCCTGTCGCCTTTAACCCTAGAGACTTTTCAACTTTTA
804181 ATCTACCTGTTAGCTTTGACCTTGGAGATTTTCCTACTTTCAGTCCGCCGGCATTGACCCTAGAA
131 ATCTACCTGTTAGCTTTGACCTTGGAGATTTTCCTACTTTCAGTCCGCCGGCATTGACCCTAGAA
804246 ACTACTTCATCTAAAATTTTCTTGTCAGCTTTGACCCTAGACACTTTCTTACTTTCAGTCAGTCT
196 ACTACTTCATCTAAAATTTTCTTGTCAGCTTTGACCCTAGACACTTTCTTACTTTCAGTCAGTCT
804311 GTCAGCTTTGACCCTAAAGACTGCTTCATCTAAAGTCTGCTTGTCGACTTTGAACTTGGAGACTT
261 GTCAGCTTTGACCCTAAAGACTGCTTCATCTAAAGTCTGCTTGTCGACTTTGAACTTGGAGACTT
804376 TCTTACCCTTCAGTTTGCTTGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACTTGTT
326 TCTTACCCTTCAGTTTGCTTGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACTTGTT
*
804441 GGCTTTGACCTTGGAGACTGCCTCATCTAAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCT
391 GCCTTTGACCTTGGAGACTGCCTCATCTAAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCT
804506 TACTTTTAGTCTGCCTGTCGACTTTGACCCTAGAGACTGCCTTATCTAAAGTCTACCTGTCAGCT
456 TACTTTTAGTCTGCCTGTCGACTTTGACCCTAGAGACTGCCTTATCTAAAGTCTACCTGTCAGCT
804571 TTGACCTTGAAGACTTTCCTACTTTTAGTCTGCTTACCGGCTTTGAGCCTGGAGACTGCCTCATC
521 TTGACCTTGAAGACTTTCCTACTTTTAGTCTGCTTACCGGCTTTGAGCCTGGAGACTGCCTCATC
804636 TAAAGTTTACCTATCAACTTTGACCTTGGAAACTTTCCTACCTTTAATCGGCTTTCACCCTAGCG
586 TAAAGTTTACCTATCAACTTTGACCTTGGAAACTTTCCTACCTTTAATCGGCTTTCACCCTAGCG
804701 ACTTTCCTACCTTCAGTCTGCCTATCAGTTTTGACTCTGAAGACTACCTCACCTAAAATCTGCCT
651 ACTTTCCTACCTTCAGTCTGCCTATCAGTTTTGACTCTGAAGACTACCTCACCTAAAATCTGCCT
804766 ATCGGTTTTGACCCTAGAGACTTTCTTACTCTTCAATTGGCTTATCGATTTTGACCTTGAAGACT
716 ATCGGTTTTGACCCTAGAGACTTTCTTACTCTTCAATTGGCTTATCGATTTTGACCTTGAAGACT
804831 GCTTCAC
781 GCTTCAC
804838 CTAAAGTCTGCCTATCGACTTTGACCCTAAAGAATTTCCAACTTCAGTCTGTCTGTCAACTTTGA
1 CTAAAGTCTGCCTATCGACTTTGACCCTAAAGAATTTCCAACTTCAGTCTGTCTGTCAACTTTGA
804903 CCCTAGAGATTTTCCTCCCTTCAGTCTGCCTGTCGCCTTTAACCCTAGAGACTTTTCAACTTTTA
66 CCCTAGAGATTTTCCTCCCTTCAGTCTGCCTGTCGCCTTTAACCCTAGAGACTTTTCAACTTTTA
804968 ATCTACCTGTTAGCTTTGACCTTGGAGATTTTCCTACTTTCAGTCCGCCGGCATTGACCCTAGAA
131 ATCTACCTGTTAGCTTTGACCTTGGAGATTTTCCTACTTTCAGTCCGCCGGCATTGACCCTAGAA
805033 ACTACTTCATCTAAAATTTTCTTGTCAGCTTTGACCCTAGACACTTTCTTACTTTCAGTCAGTCT
196 ACTACTTCATCTAAAATTTTCTTGTCAGCTTTGACCCTAGACACTTTCTTACTTTCAGTCAGTCT
*
805098 GTCAGCTTTGACCCTAAAGACTGCTTCATCTAAAGTCTGTTTGTCGACTTTGAACTTGGAGACTT
261 GTCAGCTTTGACCCTAAAGACTGCTTCATCTAAAGTCTGCTTGTCGACTTTGAACTTGGAGACTT
805163 TCTTACCCTTCAGTTTGCTTGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACTTGTT
326 TCTTACCCTTCAGTTTGCTTGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACTTGTT
805228 GCCTTTGACCTTGGAGACTGCCTCATCTAAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCT
391 GCCTTTGACCTTGGAGACTGCCTCATCTAAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCT
805293 TACTTTTAGTCTGCCTGTCGACTTTGACCCTAGAGACTGCCTTATCTAAAGTCTACCTGTCAGCT
456 TACTTTTAGTCTGCCTGTCGACTTTGACCCTAGAGACTGCCTTATCTAAAGTCTACCTGTCAGCT
805358 TTGACCTTGAAGACTTTCCTACTTTTAGTCTGCTTACCGGCTTTGAGCCTGGAGACTGCCTCATC
521 TTGACCTTGAAGACTTTCCTACTTTTAGTCTGCTTACCGGCTTTGAGCCTGGAGACTGCCTCATC
805423 TAAAGTTTACCTATCAACTTTGACCTTGGAAACTTTCCTACCTTTAATCGGCTTTCACCCTAGCG
586 TAAAGTTTACCTATCAACTTTGACCTTGGAAACTTTCCTACCTTTAATCGGCTTTCACCCTAGCG
805488 ACTTTCCTACCTTCAGTCTGCCTATCAGTTTTGACTCTGAAGACTACCTCACCTAAAATCTGCCT
651 ACTTTCCTACCTTCAGTCTGCCTATCAGTTTTGACTCTGAAGACTACCTCACCTAAAATCTGCCT
805553 ATCGGTTTTGACCCTAGAGACTTTCTTACTCTTCAATTGGCTTATCGATTTTGACCTTGAAGACT
716 ATCGGTTTTGACCCTAGAGACTTTCTTACTCTTCAATTGGCTTATCGATTTTGACCTTGAAGACT
805618 GCTTCAC
781 GCTTCAC
805625 CTAAAGTCTGCCTATCGACTTTGACCCTA
1 CTAAAGTCTGCCTATCGACTTTGACCCTA
805654 GACATGTTCT
Statistics
Matches: 812, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
787 812 1.00
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (787 bp):
CTAAAGTCTGCCTATCGACTTTGACCCTAAAGAATTTCCAACTTCAGTCTGTCTGTCAACTTTGA
CCCTAGAGATTTTCCTCCCTTCAGTCTGCCTGTCGCCTTTAACCCTAGAGACTTTTCAACTTTTA
ATCTACCTGTTAGCTTTGACCTTGGAGATTTTCCTACTTTCAGTCCGCCGGCATTGACCCTAGAA
ACTACTTCATCTAAAATTTTCTTGTCAGCTTTGACCCTAGACACTTTCTTACTTTCAGTCAGTCT
GTCAGCTTTGACCCTAAAGACTGCTTCATCTAAAGTCTGCTTGTCGACTTTGAACTTGGAGACTT
TCTTACCCTTCAGTTTGCTTGTCAGTTTTGACCCTAAAGACTTTCCTACTTTCAGTCTACTTGTT
GCCTTTGACCTTGGAGACTGCCTCATCTAAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCT
TACTTTTAGTCTGCCTGTCGACTTTGACCCTAGAGACTGCCTTATCTAAAGTCTACCTGTCAGCT
TTGACCTTGAAGACTTTCCTACTTTTAGTCTGCTTACCGGCTTTGAGCCTGGAGACTGCCTCATC
TAAAGTTTACCTATCAACTTTGACCTTGGAAACTTTCCTACCTTTAATCGGCTTTCACCCTAGCG
ACTTTCCTACCTTCAGTCTGCCTATCAGTTTTGACTCTGAAGACTACCTCACCTAAAATCTGCCT
ATCGGTTTTGACCCTAGAGACTTTCTTACTCTTCAATTGGCTTATCGATTTTGACCTTGAAGACT
GCTTCAC
Found at i:805616 original size:85 final size:84
Alignment explanation
Indices: 805469--805691 Score: 229
Period size: 85 Copynumber: 2.6 Consensus size: 84
805459 CCTACCTTTA
* * *
805469 ATCGGCTTTCACCCTAGCGACTTTCCTACCTTCAGTCTGCCTATCAGTTTTGACTCTGAAGACTA
1 ATCGGCTTTGACCCTAGAGACTTTCCTACCTTCAATCTGCCTATCAGTTTTGACTCTGAAGACTA
805534 CCTCACCTAAAATCTGCCT
66 CCTCACCTAAAATCTGCCT
* * *
805553 ATCGGTTTTGACCCTAGAGACTTTCTTACTCTTCAAT-TGGCTTATC-GATTTTGAC-CTTGAAG
1 ATCGGCTTTGACCCTAGAGACTTTCCTAC-CTTCAATCT-GCCTATCAG-TTTTGACTC-TGAAG
* * *
805615 ACTGCTTCACCTAAAGTCTGCCT
62 ACTACCTCACCTAAAATCTGCCT
* * * * * * *
805638 ATCGACTTTGACCCTAGACA-TGTTCTTACCTTTAGTCTGCCTATCGGCTTTGAC
1 ATCGGCTTTGACCCTAGAGACT-TTCCTACCTTCAATCTGCCTATCAGTTTTGAC
805692 CTTGGAGACT
Statistics
Matches: 116, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
84 46 0.40
85 70 0.60
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (84 bp):
ATCGGCTTTGACCCTAGAGACTTTCCTACCTTCAATCTGCCTATCAGTTTTGACTCTGAAGACTA
CCTCACCTAAAATCTGCCT
Found at i:805706 original size:42 final size:42
Alignment explanation
Indices: 805469--805874 Score: 167
Period size: 42 Copynumber: 9.6 Consensus size: 42
805459 CCTACCTTTA
* * * * *
805469 ATCGGCTTTCACCCTAGCGACTTTCCTACCTTCAGTCTGCCT
1 ATCGGCTTTGACCCTGGAGACTTTCTTACCTTAAGTCTGCCT
* * * * ** * * *
805511 ATCAGTTTTGACTCTGAAGACTACCTCACCTAAAATCTGCCT
1 ATCGGCTTTGACCCTGGAGACTTTCTTACCTTAAGTCTGCCT
* * *
805553 ATCGGTTTTGACCCTAGAGACTTTCTTACTCTTCAA-T-TGGCTT
1 ATCGGCTTTGACCCTGGAGACTTTCTTAC-CTT-AAGTCT-GCCT
** * * * *
805596 ATCGATTTTGACCTTGAAGAC-TGCTTCACCTAAAGTCTGCCT
1 ATCGGCTTTGACCCTGGAGACTTTCTT-ACCTTAAGTCTGCCT
* *
805638 ATCGACTTTGACCCT--AGACATGTTCTTACCTTTAGTCTGCCT
1 ATCGGCTTTGACCCTGGAGAC-T-TTCTTACCTTAAGTCTGCCT
* * * *
805680 ATCGGCTTTGACCTTGGAGACTTTCTTACTTTCAGTCTGCTT
1 ATCGGCTTTGACCCTGGAGACTTTCTTACCTTAAGTCTGCCT
* * * *** * * * ** *
805722 GTCAGTTTTGATTTTGGAGA-TTGCCTCATCAAAAGTTTGCCT
1 ATCGGCTTTGACCCTGGAGACTT-TCTTACCTTAAGTCTGCCT
* * * * **
805764 GTTGGCCTTGACCCTGGAGACTTTCCTTACCCTCAAGTCTGTTT
1 ATCGGCTTTGACCCTGGAGACTTT-CTTA-CCTTAAGTCTGCCT
** * ** *
805808 ATCGATTTTGACCTTGGAGACTTTCTTACCATGGAGTCTGCCC
1 ATCGGCTTTGACCCTGGAGACTTTCTTACC-TTAAGTCTGCCT
* * * *
805851 GTCGGCTTTAACCCTAGAAACTTT
1 ATCGGCTTTGACCCTGGAGACTTT
805875 TTCATCTTTT
Statistics
Matches: 261, Mismatches: 87, Indels: 31
0.69 0.23 0.08
Matches are distributed among these distances:
40 4 0.02
41 4 0.02
42 157 0.60
43 64 0.25
44 32 0.12
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (42 bp):
ATCGGCTTTGACCCTGGAGACTTTCTTACCTTAAGTCTGCCT
Found at i:806427 original size:25 final size:26
Alignment explanation
Indices: 806389--806442 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
806379 TCAGTTTATT
*
806389 TAACATGAATAATAAAAAAATATTAA
1 TAACATGAATAATAAAAAAATAGTAA
**
806415 TAACAT-AATAATAGTAAAATAGTAA
1 TAACATGAATAATAAAAAAATAGTAA
806440 TAA
1 TAA
806443 TTAATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.28
Consensus pattern (26 bp):
TAACATGAATAATAAAAAAATAGTAA
Found at i:806681 original size:25 final size:25
Alignment explanation
Indices: 806652--806807 Score: 258
Period size: 25 Copynumber: 6.2 Consensus size: 25
806642 TACTTTCATG
*
806652 CATGCATTTCACATATTGTTCATTT
1 CATGCATTTCACATAATGTTCATTT
* *
806677 CATGCATTTCACATAATTTTCATTA
1 CATGCATTTCACATAATGTTCATTT
806702 CATGCATTTCACATAATGTTCATTT
1 CATGCATTTCACATAATGTTCATTT
806727 CATGCATTTCACATAATGTTCATTT
1 CATGCATTTCACATAATGTTCATTT
806752 CATGCATTTCACATAATGTTCATTT
1 CATGCATTTCACATAATGTTCATTT
* * *
806777 CATGCATTTCTCATAATTTTCATTC
1 CATGCATTTCACATAATGTTCATTT
806802 CATGCA
1 CATGCA
806808 CCAAATTAAA
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 123 1.00
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (25 bp):
CATGCATTTCACATAATGTTCATTT
Found at i:807175 original size:33 final size:33
Alignment explanation
Indices: 807138--807210 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
807128 CTACTATTGC
* * *
807138 AAATGAATGCAATTGAAACAGCAGTTCAAGGGA
1 AAATGAATGCAATCGAAACAGCAATTCAAAGGA
* *
807171 AAATGAATGCAATCGAAACAGTAATTCAAAGGC
1 AAATGAATGCAATCGAAACAGCAATTCAAAGGA
807204 AAATGAA
1 AAATGAA
807211 CGTAATCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.49, C:0.12, G:0.21, T:0.18
Consensus pattern (33 bp):
AAATGAATGCAATCGAAACAGCAATTCAAAGGA
Found at i:807372 original size:22 final size:23
Alignment explanation
Indices: 807329--807372 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
807319 GGGAAATAAA
*
807329 AACAATAGAAAAAAATCGAGCAGC
1 AACAAGAGAAAAAAATC-AGCAGC
807353 AACAAGAGAAAAAAAT-AGCA
1 AACAAGAGAAAAAAATCAGCA
807373 AAGAAAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
24 15 0.79
ACGTcount: A:0.64, C:0.14, G:0.16, T:0.07
Consensus pattern (23 bp):
AACAAGAGAAAAAAATCAGCAGC
Found at i:807545 original size:64 final size:63
Alignment explanation
Indices: 807446--807564 Score: 166
Period size: 64 Copynumber: 1.9 Consensus size: 63
807436 AACAATCGAA
* *
807446 AAAGAGAGGGGGAGAGGAATCAAAACAAAAGGCAATTGAAAACAAAGAAACAAACCGAAAATG
1 AAAGAGAGGAGGAGAGGAATCAAAACAAAAGGCAATTGAAAACAAAAAAACAAACCGAAAATG
* * * * *
807509 AAAGAGAGGAAGGAGGGGAATCGAAATAAAATGCAATTGAAAACAAAAAAAGAAAC
1 AAAGAGAGG-AGGAGAGGAATCAAAACAAAAGGCAATTGAAAACAAAAAAACAAAC
807565 AAAAAGAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
63 9 0.19
64 39 0.81
ACGTcount: A:0.58, C:0.09, G:0.25, T:0.08
Consensus pattern (63 bp):
AAAGAGAGGAGGAGAGGAATCAAAACAAAAGGCAATTGAAAACAAAAAAACAAACCGAAAATG
Found at i:809557 original size:20 final size:21
Alignment explanation
Indices: 809527--809567 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
809517 GCTTTGTATC
809527 GATACATTGTATCAATACATG
1 GATACATTGTATCAATACATG
*
809548 GATA-ATTGTATCGATACATG
1 GATACATTGTATCAATACATG
809568 AAACTAGCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (21 bp):
GATACATTGTATCAATACATG
Found at i:814246 original size:13 final size:13
Alignment explanation
Indices: 814228--814254 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
814218 ACAACATTCC
814228 TTGTATCGATACA
1 TTGTATCGATACA
814241 TTGTATCGATACA
1 TTGTATCGATACA
814254 T
1 T
814255 GGATTACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:816134 original size:22 final size:22
Alignment explanation
Indices: 816099--816140 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
816089 TTTTTTAAGG
816099 TTTGACAAACGGGGAGAAATGC
1 TTTGACAAACGGGGAGAAATGC
* *
816121 TTTGATAAAGGGGGAGAAAT
1 TTTGACAAACGGGGAGAAAT
816141 ATGTTTATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.21
Consensus pattern (22 bp):
TTTGACAAACGGGGAGAAATGC
Found at i:816857 original size:20 final size:20
Alignment explanation
Indices: 816832--816881 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
816822 CACTTTTTGA
816832 ATCGATACAT-AGGACATTGC
1 ATCGATACATGAGGA-ATTGC
* *
816852 ATCGATACATGATGAATTGT
1 ATCGATACATGAGGAATTGC
816872 ATCGATACAT
1 ATCGATACAT
816882 TGCTTATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 24 0.89
21 3 0.11
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (20 bp):
ATCGATACATGAGGAATTGC
Found at i:821917 original size:13 final size:13
Alignment explanation
Indices: 821899--821924 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
821889 CAATTTTTTG
821899 TGTATCGATACAT
1 TGTATCGATACAT
821912 TGTATCGATACAT
1 TGTATCGATACAT
821925 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:821989 original size:21 final size:21
Alignment explanation
Indices: 821963--822038 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
821953 CTGCCAAGAA
*
821963 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
821984 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
822004 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
822025 ATGTATCGATACAT
1 ATGTATCGATACAT
822039 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:822009 original size:20 final size:20
Alignment explanation
Indices: 821984--822056 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
821974 CATCTTTTTT
821984 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
822004 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
822025 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
822045 ATGTATCGATAC
1 ATGTATCGATAC
822057 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:822020 original size:41 final size:41
Alignment explanation
Indices: 821963--822056 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
821953 CTGCCAAGAA
*
821963 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
822004 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
822045 ATGTATCGATAC
1 ATGTATCGATAC
822057 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:822723 original size:36 final size:36
Alignment explanation
Indices: 822679--822750 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
822669 TTTATTAATA
*
822679 AATCTCCCCCTTAATCAAGTAATTCATATCAAAATT
1 AATCTCCCCATTAATCAAGTAATTCATATCAAAATT
822715 AATCTCCCCATTAATCAAGTAATTCATATCAAAATT
1 AATCTCCCCATTAATCAAGTAATTCATATCAAAATT
822751 TATTTGCACT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.33
Consensus pattern (36 bp):
AATCTCCCCATTAATCAAGTAATTCATATCAAAATT
Found at i:824551 original size:13 final size:13
Alignment explanation
Indices: 824533--824571 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
824523 ATAATCACCC
*
824533 TGTATCGATACAG
1 TGTATCGATACAA
824546 TGTATCGATACAA
1 TGTATCGATACAA
824559 TGTATCGATACAA
1 TGTATCGATACAA
824572 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:824582 original size:20 final size:20
Alignment explanation
Indices: 824557--824635 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
824547 GTATCGATAC
824557 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
824577 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
824602 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
824622 CATGTATCGATACA
1 AATGTATCGATACA
824636 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:826667 original size:15 final size:15
Alignment explanation
Indices: 826647--826677 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
826637 ATTTCGTTTG
*
826647 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
826662 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
826677 G
1 G
826678 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:830756 original size:13 final size:13
Alignment explanation
Indices: 830738--830763 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
830728 CAATTTTTTG
830738 TGTATCGATACAT
1 TGTATCGATACAT
830751 TGTATCGATACAT
1 TGTATCGATACAT
830764 ACTTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:830828 original size:21 final size:21
Alignment explanation
Indices: 830802--830877 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
830792 CTGCCAAGAA
*
830802 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
830823 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
830843 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
830864 ATGTATCGATACAT
1 ATGTATCGATACAT
830878 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:830848 original size:20 final size:20
Alignment explanation
Indices: 830823--830895 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
830813 CATCTTTTTT
830823 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
830843 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
830864 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
830884 ATGTATCGATAC
1 ATGTATCGATAC
830896 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:830859 original size:41 final size:41
Alignment explanation
Indices: 830802--830895 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
830792 CTGCCAAGAA
*
830802 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
830843 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
830884 ATGTATCGATAC
1 ATGTATCGATAC
830896 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:833224 original size:61 final size:61
Alignment explanation
Indices: 833117--833562 Score: 447
Period size: 61 Copynumber: 7.3 Consensus size: 61
833107 ACCTTTTATG
** *
833117 CTTTTAGTCCTCAAAGAGCAGGA-TGCTTTCTCTTTTTAAAGCCCACACAAATTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGACACCTTT-TCTTTTTAAAGCCCACACAAGTTGGTGGCAC
* *
833178 CTTTTAGTCCTCAAAAAGCAAGACACCTGTTTCTTTTTAAAG-CCACACAAGTTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGACACCT-TTTCTTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * *
833239 TTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTTTTAAAGCCCACACAAGTTAGTGGCAT
1 CTTTTAGTCCTCAAAGAGCAGGACACC-TTTT-C-TTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * * * * * * * * *
833303 ATTTCAGTCTTCAAAAAGCAGGGCGCCTTCTCCTTTCAAAGCACACATAAGTTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * * **
833364 CTTTCAGTTCTCAAAGAGCAGGACA-CTTTTC-TTTCAAAGCCCACACAAGTCGACGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCAC
* ** * * * *
833423 CTTTCAGTCCTCAAAGAGCAGGACGTCTTTCCCTTTTATAGCCCACACAAATTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * * *
833484 CTTCTAGTCCCCAAAGAGTAGGACA-CTTAT-TTTTTAAAGCTCACACAAGTTGGTGGCA-
1 CTTTTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCAC
833542 CTTTCTAGTCCTCAAAGAGCA
1 CTTT-TAGTCCTCAAAGAGCA
833563 AGACGTCTCT
Statistics
Matches: 318, Mismatches: 58, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
58 3 0.01
59 84 0.26
60 13 0.04
61 149 0.47
62 16 0.05
63 14 0.04
64 39 0.12
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (61 bp):
CTTTTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCAC
Found at i:833458 original size:120 final size:121
Alignment explanation
Indices: 833117--833580 Score: 458
Period size: 120 Copynumber: 3.8 Consensus size: 121
833107 ACCTTTTATG
* ** * *
833117 CTTTTAGTCCTCAAAGAGCAGGATGCTTTCTCTTTTTAAAGCCCACACAAATTGGTGGCACCTTT
1 CTTTCAGTCCTCAAAGAGCAGGACACTTT-TCTTTTTAAAGCCCACACAAGTTGATGGCACCTTT
* ** *
833182 TAGTCCTCAAAAAGCAAGACACCTGTT-TCTTTTTAAAGCCACACAAGTTGGTGGCAC
65 CAGTCCTCAAAAAGCAAGACGTCT-TTCTCCTTTTAAAGCCACACAAGTTGGTGGCAC
* * * *
833239 TTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTTTTAAAGCCCACACAAGTT-AGTGGCAT
1 CTTTCAGTCCTCAAAGAGCAGGAC-AC-TTTT-C-TTTTTAAAGCCCACACAAGTTGA-TGGCAC
* * * * * * *
833303 ATTTCAGTCTTCAAAAAGCAGGGCG-CCTTCTCCTTTCAAAGCACACATAAGTTGGTGGCAC
61 CTTTCAGTCCTCAAAAAGCAAGACGTCTTTCTCCTTTTAAAGC-CACACAAGTTGGTGGCAC
* * * *
833364 CTTTCAGTTCTCAAAGAGCAGGACACTTTTC-TTTCAAAGCCCACACAAGTCGACGGCACCTTTC
1 CTTTCAGTCCTCAAAGAGCAGGACACTTTTCTTTTTAAAGCCCACACAAGTTGATGGCACCTTTC
* * * *
833428 AGTCCTCAAAGAGCAGGACGTCTTTC-CCTTTTATAGCCCACACAAATTGGTGGCAC
66 AGTCCTCAAAAAGCAAGACGTCTTTCTCCTTTTAAAG-CCACACAAGTTGGTGGCAC
* * * * *
833484 C-TTCTAGTCCCCAAAGAGTAGGACACTTAT-TTTTTAAAGCTCACACAAGTTGGTGGCA-CTTT
1 CTTTC-AGTCCTCAAAGAGCAGGACACTTTTCTTTTTAAAGCCCACACAAGTTGATGGCACCTTT
* *
833546 CTAGTCCTCAAAGAGCAAGACGTCTCTCTCCTTTT
65 C-AGTCCTCAAAAAGCAAGACGTCTTTCTCCTTTT
833581 CCATCTTAAA
Statistics
Matches: 284, Mismatches: 44, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
119 8 0.03
120 135 0.48
121 12 0.04
122 23 0.08
123 8 0.03
124 16 0.06
125 82 0.29
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (121 bp):
CTTTCAGTCCTCAAAGAGCAGGACACTTTTCTTTTTAAAGCCCACACAAGTTGATGGCACCTTTC
AGTCCTCAAAAAGCAAGACGTCTTTCTCCTTTTAAAGCCACACAAGTTGGTGGCAC
Found at i:836350 original size:21 final size:20
Alignment explanation
Indices: 836324--836376 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
836314 TACCAGCCAA
**
836324 TGTATCGATACAATTTTTTTG
1 TGTATCGATACAA-TACTTTG
836345 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
836364 TGTATCGATACAA
1 TGTATCGATACAA
836377 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 16 0.55
20 2 0.07
21 11 0.38
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:836717 original size:22 final size:22
Alignment explanation
Indices: 836673--836718 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
836663 TTAATTGAAT
*
836673 AAAATATATTTCTGGTATTTTC
1 AAAATATATTTCCGGTATTTTC
*
836695 AAAATA-ATTTCCGGTTTTATTC
1 AAAATATATTTCCGGTATT-TTC
836717 AA
1 AA
836719 TCCTTTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.46
Consensus pattern (22 bp):
AAAATATATTTCCGGTATTTTC
Found at i:837166 original size:29 final size:29
Alignment explanation
Indices: 837124--837183 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
837114 TTTATTTGCA
837124 CATACATACATCTATTCTTAAGGTAATAT
1 CATACATACATCTATTCTTAAGGTAATAT
*
837153 CATACATACATCTATTCTTAATGTAATAT
1 CATACATACATCTATTCTTAAGGTAATAT
837182 CA
1 CA
837184 AAAGTTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.38
Consensus pattern (29 bp):
CATACATACATCTATTCTTAAGGTAATAT
Found at i:837216 original size:45 final size:45
Alignment explanation
Indices: 837153--837260 Score: 198
Period size: 45 Copynumber: 2.4 Consensus size: 45
837143 AAGGTAATAT
* *
837153 CATACATACATCTATTCTTAATGTAATATCAAAAGTTTATTTGCA
1 CATACATACATCTATTCTTAAGGTAATATCAAAAATTTATTTGCA
837198 CATACATACATCTATTCTTAAGGTAATATCAAAAATTTATTTGCA
1 CATACATACATCTATTCTTAAGGTAATATCAAAAATTTATTTGCA
837243 CATACATACATCTATTCT
1 CATACATACATCTATTCT
837261 CTCCCCTTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.39
Consensus pattern (45 bp):
CATACATACATCTATTCTTAAGGTAATATCAAAAATTTATTTGCA
Found at i:838578 original size:21 final size:20
Alignment explanation
Indices: 838549--838591 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
838539 GACTAGTGTG
* *
838549 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGCGACCT
*
838570 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
838590 GG
1 GG
838592 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:839041 original size:13 final size:13
Alignment explanation
Indices: 839023--839060 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
839013 ATAATCCCCC
839023 TGTATCGATACAG
1 TGTATCGATACAG
*
839036 TGTATCGATACAT
1 TGTATCGATACAG
839049 TGTATCGATACA
1 TGTATCGATACA
839061 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:841128 original size:15 final size:15
Alignment explanation
Indices: 841108--841138 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
841098 ATTTTGTTTG
*
841108 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
841123 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
841138 G
1 G
841139 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:845224 original size:13 final size:13
Alignment explanation
Indices: 845206--845231 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
845196 AATTTTTTTG
845206 TGTATCGATACAT
1 TGTATCGATACAT
845219 TGTATCGATACAT
1 TGTATCGATACAT
845232 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:846679 original size:80 final size:80
Alignment explanation
Indices: 846580--846939 Score: 379
Period size: 80 Copynumber: 4.5 Consensus size: 80
846570 CCACCATTAG
* * * *
846580 GGATACTCCAACCCCGTTATTTCCGAGGGGATACTCTGACCTCAATTTTATTTCCAAAACACCAA
1 GGATACTCCAACCCTGTTATTTCCGAGGGGATACTCTAACCCCAATTTTATTTCCAAAACACCGA
846645 TTTTTTCACAATCGA
66 TTTTTTCACAATCGA
* * * * *
846660 GGATACTCTAACCCTGTTATTTCTGAGGGGATACTCTAACCCCAGTTTTATTTTCAAAACACTGA
1 GGATACTCCAACCCTGTTATTTCCGAGGGGATACTCTAACCCCAATTTTATTTCCAAAACACCGA
846725 TTTTTTCACAATC-A
66 TTTTTTCACAATCGA
* * * * * * * *
846739 GGGATACTCCAA-CCTCGTTATTTTCAAGCGAATACTCCAACCCCGATTTTATTTCTAAAACATC
1 -GGATACTCCAACCCT-GTTATTTCCGAGGGGATACTCTAACCCCAATTTTATTTCCAAAACACC
*
846803 GATTTTTTCACAATCGG
64 GATTTTTTCACAATCGA
* * * * * * *
846820 GGATACTCCAA-CCTCATTATTTCTGAAGGGATACTCTAA-CCTAGGTTTTATTTCTAAAACATC
1 GGATACTCCAACCCT-GTTATTTCCGAGGGGATACTCTAACCCCA-ATTTTATTTCCAAAACACC
* *
846883 GA-TTTTTCACCATCAA
64 GATTTTTTCACAATCGA
* * *
846899 GGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACC
1 GGATACTCCAACCCTGTTATTTCCGAGGGGATACTCTAACC
846940 TCATTATTTC
Statistics
Matches: 233, Mismatches: 41, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
79 48 0.21
80 185 0.79
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (80 bp):
GGATACTCCAACCCTGTTATTTCCGAGGGGATACTCTAACCCCAATTTTATTTCCAAAACACCGA
TTTTTTCACAATCGA
Found at i:846810 original size:160 final size:158
Alignment explanation
Indices: 846546--846939 Score: 472
Period size: 160 Copynumber: 2.5 Consensus size: 158
846536 TCATTCATGT
* * * * * *
846546 TTTTATTTCTATAACATTGATTTTCCACCATTAGGGATACTCCAACCCCGTTATTTCCGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACAATCAGGGATACTCCAA-CCCGTTATTTTCGAGGGGA
** * *
846611 TACTCTGACCTCAATTTTATTTCCAAAACACCAATTTTTTCACAATCGAGGATACTCTAACC-CT
65 TACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTTTCACAATCGAGGATACTCCAACCTC-
* *
846675 GTTATTTCTGAGGGGATACTCTAACCCCA-G
129 ATTATTTCTGAAGGGATACTCTAA-CCCAGG
* *
846705 TTTTATTT-TCAAAACA-CTGATTTTTTCACAATCAGGGATACTCCAACCTCGTTATTTTCAAGC
1 TTTTATTTCT-AAAACATC-GA-TTTTTCACAATCAGGGATACTCCAACC-CGTTATTTTCGAGG
* * * * * *
846768 GAATACTCCAACCCCGATTTTATTTCTAAAACATCGATTTTTTCACAATCGGGGATACTCCAACC
62 GGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTTTCACAATCGAGGATACTCCAACC
*
846833 TCATTATTTCTGAAGGGATACTCTAACCTAGG
127 TCATTATTTCTGAAGGGATACTCTAACCCAGG
* * *
846865 TTTTATTTCTAAAACATCGATTTTTCACCATCAAGGATACTCCAACCCTATTATTTTCGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACAATCAGGGATACTCCAACCC-GTTATTTTCGAGGGGA
846930 TACTCCAACC
65 TACTCCAACC
846940 TCATTATTTC
Statistics
Matches: 199, Mismatches: 27, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
158 2 0.01
159 67 0.34
160 127 0.64
161 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (158 bp):
TTTTATTTCTAAAACATCGATTTTTCACAATCAGGGATACTCCAACCCGTTATTTTCGAGGGGAT
ACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTTTCACAATCGAGGATACTCCAACCTCAT
TATTTCTGAAGGGATACTCTAACCCAGG
Found at i:846939 original size:28 final size:29
Alignment explanation
Indices: 846899--846968 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
846889 TCACCATCAA
* *
846899 GGATACTCCAACCCT-ATTATTTTCGAGG
1 GGATACTCCAACCCTCATTATTTCCAAGG
846927 GGATACTCCAA-CCTCATTATTTCCAAGG
1 GGATACTCCAACCCTCATTATTTCCAAGG
*
846955 AGATACTCCAACCC
1 GGATACTCCAACCC
846969 CAATTTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.08
28 32 0.86
29 2 0.05
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
GGATACTCCAACCCTCATTATTTCCAAGG
Found at i:846939 original size:107 final size:107
Alignment explanation
Indices: 846818--847046 Score: 293
Period size: 107 Copynumber: 2.1 Consensus size: 107
846808 TTTCACAATC
* * * *
846818 GGGGATACTCCAACCTCATTATTTCTGAAGG-GATACTCTAA-CCTAGGTTTTATTTCTAAAACA
1 GGGGATACTCCAACCTCATTATTTC-CAAGGAGATACTCCAACCCCA-ATTTTATTTCTAAAACA
* *
846881 -TCGATTTTTCACCATCAAGGATACTCCAACCCTATTATTTTCGA
64 CT-GATTTTCCACCATCAAGGATACTCCAACCCCATTATTTTCGA
*
846925 GGGGATACTCCAACCTCATTATTTCCAAGGAGATACTCCAACCCCAATTTTATTTCTAAAGCACT
1 GGGGATACTCCAACCTCATTATTTCCAAGGAGATACTCCAACCCCAATTTTATTTCTAAAACACT
***
846990 GATTTTCCACCATTGGGGATACTCCAACCCCATTATTTTCGA
66 GATTTTCCACCATCAAGGATACTCCAACCCCATTATTTTCGA
***
847032 CTAGATACTCCAACC
1 GGGGATACTCCAACC
847047 CCGGTTACAT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
106 4 0.04
107 98 0.92
108 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (107 bp):
GGGGATACTCCAACCTCATTATTTCCAAGGAGATACTCCAACCCCAATTTTATTTCTAAAACACT
GATTTTCCACCATCAAGGATACTCCAACCCCATTATTTTCGA
Found at i:847008 original size:79 final size:79
Alignment explanation
Indices: 846925--847301 Score: 382
Period size: 79 Copynumber: 4.8 Consensus size: 79
846915 TTATTTTCGA
* * * *
846925 GGGGATACTCCAACCTCATTATTTCCAAGGAGATACTCCAACCCCAATTTTATTTCTAAAGCACT
1 GGGGATACTCCAACCCCATTATTTCCAAGGAGATACTCCAACCCCGATTTTATTTCCAAAACACT
*
846990 GATTTTCCACCATT
66 GATTTTCCACCATC
* * ** * **
847004 GGGGATACTCCAACCCCATTATTTTCGACTAGATACTCCAACCCCGGTTACATTTCCAAAACACT
1 GGGGATACTCCAACCCCATTATTTCCAAGGAGATACTCCAACCCCGATTTTATTTCCAAAACACT
847069 GATTTTCCACCATC
66 GATTTTCCACCATC
* * * * * * * *
847083 AGGGATACTCCAACTCTATTATTTTCAAGGGGATACTCTAACCCCGATTTTATTTCCAAAGCACC
1 GGGGATACTCCAACCCCATTATTTCCAAGGAGATACTCCAACCCCGATTTTATTTCCAAAACACT
* * *
847148 AATTTTTCACAATC
66 GATTTTCCACCATC
** ** * ** *
847162 GGGGATACTCCAACCCTGTTATTTCGGA-GAGGATACTCCGACCTTGATTTTATTTCCAAAACAT
1 GGGGATACTCCAACCCCATTATTTCCAAGGA-GATACTCCAACCCCGATTTTATTTCCAAAACAC
847226 TGATTTTCCACCATC
65 TGATTTTCCACCATC
* * * * *
847241 GGGGATACTCTAACCCCGTTATTTCAGAAGG-GATACTCCAA-CCCTATTTTCATCTCCAAAA
1 GGGGATACTCCAACCCCATTATTTC-CAAGGAGATACTCCAACCCCGATTTT-ATTTCCAAAA
847302 TATTAAATTT
Statistics
Matches: 241, Mismatches: 53, Indels: 8
0.80 0.18 0.03
Matches are distributed among these distances:
78 7 0.03
79 231 0.96
80 2 0.01
81 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (79 bp):
GGGGATACTCCAACCCCATTATTTCCAAGGAGATACTCCAACCCCGATTTTATTTCCAAAACACT
GATTTTCCACCATC
Found at i:847091 original size:186 final size:187
Alignment explanation
Indices: 846739--847125 Score: 505
Period size: 186 Copynumber: 2.1 Consensus size: 187
846729 TTCACAATCA
* * *
846739 GGGATACTCCAACCTCGTTATTTTCAAGCGAATACTCCAACCCCGATTTTATTTCTAAAACATCG
1 GGGATACTCCAACCTCATTATTTCCAAGCGAATACTCCAACCCCAATTTTATTTCTAAAACATCG
* * * * * **
846804 ATTTTTTCACAATCGGGGATACTCCAACCTCATTATTTCTGAAGGGATACTCTAACCTAGGTTTT
66 ATTTTTCCACAATCGGGGATACTCCAACCCCATTATTTCTGAAGAGATACTCCAACCCAGGTTAC
* * *
846869 ATTTCTAAAACATCGATTTTTCACCATCAAGGATACTCCAACCCTATTATTTTCGAG
131 ATTTCCAAAACATCGATTTTCCACCATCAAGGATACTCCAACCCTATTATTTTCAAG
*
846926 GGGATACTCCAACCTCATTATTTCCAAG-GAGATACTCCAACCCCAATTTTATTTCTAAAGCA-C
1 GGGATACTCCAACCTCATTATTTCCAAGCGA-ATACTCCAACCCCAATTTTATTTCTAAAACATC
* * ** *
846989 TGA-TTTTCCACCATTGGGGATACTCCAACCCCATTATTT-TCGACTAGATACTCCAACCCCGGT
65 -GATTTTTCCACAATCGGGGATACTCCAACCCCATTATTTCT-GAAGAGATACTCCAACCCAGGT
* *
847052 TACATTTCCAAAACA-CTGATTTTCCACCATCAGGGATACTCCAACTCTATTATTTTCAAG
128 TACATTTCCAAAACATC-GATTTTCCACCATCAAGGATACTCCAACCCTATTATTTTCAAG
*
847112 GGGATACTCTAACC
1 GGGATACTCCAACC
847126 CCGATTTTAT
Statistics
Matches: 174, Mismatches: 22, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
185 2 0.01
186 115 0.66
187 57 0.33
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (187 bp):
GGGATACTCCAACCTCATTATTTCCAAGCGAATACTCCAACCCCAATTTTATTTCTAAAACATCG
ATTTTTCCACAATCGGGGATACTCCAACCCCATTATTTCTGAAGAGATACTCCAACCCAGGTTAC
ATTTCCAAAACATCGATTTTCCACCATCAAGGATACTCCAACCCTATTATTTTCAAG
Found at i:847135 original size:158 final size:158
Alignment explanation
Indices: 846926--847284 Score: 429
Period size: 158 Copynumber: 2.3 Consensus size: 158
846916 TATTTTCGAG
* **
846926 GGGATACTCCAACCTCATTATTTCCAAGGAGATACTCCAACCCCAATTTTATTTCTAAAGCACTG
1 GGGATACTCCAACCTCATTATTTCCAAGGAGATACTCCAACCCCAATTTTATTTCCAAAGCACCA
* * * *
846991 ATTTTCCACCATTGGGGATACTCCAACCCCATTATTTTC-GACTA-GATACTCCAACCCCGGTTA
66 ATTTTCCACAATCGGGGATACTCCAACCCCATTA-TTTCGGA-GAGGATACTCCAACCCCGATTA
847054 CATTTCCAAAACACTGATTTTCCACCATCA
129 CATTTCCAAAACACTGATTTTCCACCATCA
* * * *
847084 GGGATACTCCAA-CTCTATTATTTTCAAGGGGATACTCTAACCCCGATTTTATTTCCAAAGCACC
1 GGGATACTCCAACCTC-ATTATTTCCAAGGAGATACTCCAACCCCAATTTTATTTCCAAAGCACC
* ** * ** **
847148 AATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTCGGAGAGGATACTCCGACCTTGATTTT
65 AATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCGGAGAGGATACTCCAACCCCGATTAC
* *
847213 ATTTCCAAAACATTGATTTTCCACCATCG
130 ATTTCCAAAACACTGATTTTCCACCATCA
* * * *
847242 GGGATACTCTAACCCCGTTATTTCAGAAGG-GATACTCCAACCC
1 GGGATACTCCAACCTCATTATTTC-CAAGGAGATACTCCAACCC
847285 TATTTTCATC
Statistics
Matches: 169, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 8 0.05
158 155 0.92
159 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (158 bp):
GGGATACTCCAACCTCATTATTTCCAAGGAGATACTCCAACCCCAATTTTATTTCCAAAGCACCA
ATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCGGAGAGGATACTCCAACCCCGATTACA
TTTCCAAAACACTGATTTTCCACCATCA
Found at i:848315 original size:50 final size:50
Alignment explanation
Indices: 848240--848372 Score: 212
Period size: 50 Copynumber: 2.7 Consensus size: 50
848230 CGTTGCGATA
* *
848240 GTATCGATACATCTTTCATTGTATCGATATATTCTAGGTTTTACCCAGAT
1 GTATCGATACATTTTTCATTGTATCGATACATTCTAGGTTTTACCCAGAT
*
848290 GTATCGATACGTTTTTCATTGTATCGATACATTCTAGGTTTTACCCAGAT
1 GTATCGATACATTTTTCATTGTATCGATACATTCTAGGTTTTACCCAGAT
* * *
848340 GTGTCGATACATTTCTCAATGTATCGATACATT
1 GTATCGATACATTTTTCATTGTATCGATACATT
848373 AATTTTGACC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 76 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (50 bp):
GTATCGATACATTTTTCATTGTATCGATACATTCTAGGTTTTACCCAGAT
Found at i:850962 original size:79 final size:78
Alignment explanation
Indices: 850711--851152 Score: 442
Period size: 79 Copynumber: 5.6 Consensus size: 78
850701 AAAATTTCAT
* * * * * * *
850711 GGTTTTATTTCTAAAATACCGATTTTTCACCATCGAGATACTCCAACCCCGTTGTTTCCAAGGGG
1 GGTTTTATTTCTAAAACATCGATTTTTCACAATCGGGATACTCCAACCCCGTTATTTTCGAGGGG
*
850776 ATACTCCAACCTC
66 ATACTCCAACCCC
* * * *
850789 GGTTTTATTTTTAAAACATTGATTTTTCATAATCGGGTATACTCCAA-CCCATTA-TTTCTGAGG
1 GGTTTTATTTCTAAAACATCGATTTTTCACAATCGGG-ATACTCCAACCCCGTTATTTTC-GAGG
* *
850852 GAATACTCTAACCCC
64 GGATACTCCAACCCC
*** * **
850867 AACTTTATTTCTAAAACATTGATTTTTCACAATCAGGGATACTCCAACCCTTTTATTTTCGAGGG
1 GGTTTTATTTCTAAAACATCGATTTTTCACAATC-GGGATACTCCAACCCCGTTATTTTCGAGGG
*
850932 GATATTCCAACCCC
65 GATACTCCAACCCC
* * * *
850946 GGTTTTATTTCCAAAACA-CTAATTTTTCACAATCAAGGATACTCTAACCCCGTTATTTTCGAGG
1 GGTTTTATTTCTAAAACATC-GATTTTTCACAATC-GGGATACTCCAACCCCGTTATTTTCGAGG
*
851010 GGATACTCCAACCCT
64 GGATACTCCAACCCC
* * * *** * *
851025 AGTTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCTAACGTTGTTATTTCCGAGGA
1 GGTTTTATTTCTAAAACATCGATTTTTCACAATC-GGGATACTCCAACCCCGTTATTTTCGAGGG
*
851090 GATACTCCAACACC
65 GATACTCCAACCCC
* * *
851104 GATTTTTATTTCTAAAACATCGATTTTCCACAATGGAGGATACT-CAACC
1 G-GTTTTATTTCTAAAACATCGATTTTTCACAATCG-GGATACTCCAACC
851153 TCGGCTTTAT
Statistics
Matches: 299, Mismatches: 56, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
77 3 0.01
78 88 0.29
79 167 0.56
80 41 0.14
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (78 bp):
GGTTTTATTTCTAAAACATCGATTTTTCACAATCGGGATACTCCAACCCCGTTATTTTCGAGGGG
ATACTCCAACCCC
Found at i:851162 original size:130 final size:130
Alignment explanation
Indices: 851028--851282 Score: 318
Period size: 130 Copynumber: 2.0 Consensus size: 130
851018 CAACCCTAGT
* * ** * * ** *
851028 TTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCTAACGTTGTTATTTCC-GAGGAGA
1 TTTATTTCTAAAACATCAATTTTCCAAAATCAGGGATACTCCAACCCTGTTATTTCCAAAGG-GA
* *
851092 TACTCCAACACCGATTTTTA-TTTCTAAAACATCGATTTTCCACAATGGAGGATAC-TCAACCTC
65 TACTCCAA-ACCGAGTTTTATTTTC-AAAACATCGATTTTCCACAATCGAGGATACTTCAACCTC
851155 GGC
128 GGC
*
851158 TTTATTTCTAAAATATCAATTTTCCAAAATCAGGGATACTCCAACCCTGTTATTTCCAAAGGGAT
1 TTTATTTCTAAAACATCAATTTTCCAAAATCAGGGATACTCCAACCCTGTTATTTCCAAAGGGAT
* ** *
851223 ACTTCAAACCTCGTTTTATTTTCAAAACATCGATTTTCCACCATCGAGGATACTTCAACC
66 ACTCCAAACCGAGTTTTATTTTCAAAACATCGATTTTCCACAATCGAGGATACTTCAACC
851283 CCGTTATTTT
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
129 36 0.34
130 67 0.63
131 3 0.03
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (130 bp):
TTTATTTCTAAAACATCAATTTTCCAAAATCAGGGATACTCCAACCCTGTTATTTCCAAAGGGAT
ACTCCAAACCGAGTTTTATTTTCAAAACATCGATTTTCCACAATCGAGGATACTTCAACCTCGGC
Found at i:851195 original size:50 final size:51
Alignment explanation
Indices: 851108--851203 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 51
851098 AACACCGATT
* * *
851108 TTTATTTCTAAAACATCGATTTTCCACAATGGAGGATACT-CAACCTCGGC
1 TTTATTTCTAAAACATCAATTTTCCAAAATAGAGGATACTCCAACCTCGGC
*
851158 TTTATTTCTAAAATATCAATTTTCCAAAATCAG-GGATACTCCAACC
1 TTTATTTCTAAAACATCAATTTTCCAAAAT-AGAGGATACTCCAACC
851204 CTGTTATTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
50 34 0.85
51 6 0.15
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (51 bp):
TTTATTTCTAAAACATCAATTTTCCAAAATAGAGGATACTCCAACCTCGGC
Found at i:851252 original size:209 final size:208
Alignment explanation
Indices: 850939--851320 Score: 491
Period size: 209 Copynumber: 1.8 Consensus size: 208
850929 GGGGATATTC
* * * *
850939 CAACCCCGGTTTTATTTCCAAAACACTAATTTTTCACAATCAAGGATACTCTAACCCCGTTATTT
1 CAACCCCGGCTTTATTTCCAAAACACTAATTTTCCAAAATCAAGGATACTCCAACCCCGTTATTT
* * * * * *
851004 TCGAGGGGATACTCCAACCCTAGTTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATAC-T
66 CCAAAGGGATACTCCAAACCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCGAGGATACTT
*** * *
851068 CTAACGTTGTTATTTCCGAGGAGATACTCCAACACCGATTTTTATTTCTAAAACATCGATTTTCC
131 C-AACCCCGTTATTTCCGAAGAGATACTCCAAC-CCCATTTTTATTTCTAAAACATCGATTTTCC
851133 ACAATGGAGGATACT
194 ACAATGGAGGATACT
* * * * *
851148 CAACCTCGGCTTTATTTCTAAAATA-TCAATTTTCCAAAATCAGGGATACTCCAACCCTGTTATT
1 CAACCCCGGCTTTATTTCCAAAACACT-AATTTTCCAAAATCAAGGATACTCCAACCCCGTTATT
* *
851212 TCCAAAGGGATACTTCAAACCTCGTTTTATTT-TCAAAACATCGATTTTCCACCATCGAGGATAC
65 TCCAAAGGGATACTCCAAACCTAGTTTTATTTCT-AAAACATCGATTTTCCACCATCGAGGATAC
* *
851276 TTCAACCCCGTTATTTTCGAAGAGATACTCTAACCCCATTTTTAT
129 TTCAACCCCGTTATTTCCGAAGAGATACTCCAACCCCATTTTTAT
851321 CTCCAAAATA
Statistics
Matches: 146, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
208 12 0.08
209 132 0.90
210 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.34
Consensus pattern (208 bp):
CAACCCCGGCTTTATTTCCAAAACACTAATTTTCCAAAATCAAGGATACTCCAACCCCGTTATTT
CCAAAGGGATACTCCAAACCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCGAGGATACTT
CAACCCCGTTATTTCCGAAGAGATACTCCAACCCCATTTTTATTTCTAAAACATCGATTTTCCAC
AATGGAGGATACT
Found at i:851259 original size:79 final size:78
Alignment explanation
Indices: 851141--851310 Score: 184
Period size: 79 Copynumber: 2.2 Consensus size: 78
851131 CCACAATGGA
*
851141 GGATACTCAACCTCGGCTTTATTTCTAAAATATCAATTTTCCAAAATC-AGGGATACTCCAACCC
1 GGATACTCAACCTCGGCTTTATTTCTAAAACATCAATTTTCCAAAATCGA-GGATACTCCAACCC
*
851205 TGTTATTTCCAAAG
65 CGTTATTTCCAAAG
* * ** *
851219 GGATACTTCAAACCTC-GTTTTATTT-TCAAAACATCGATTTTCCACCATCGAGGATACTTCAAC
1 GGATAC-TC-AACCTCGGCTTTATTTCT-AAAACATCAATTTTCCAAAATCGAGGATACTCCAAC
* *
851282 CCCGTTATTTTCGAAG
63 CCCGTTATTTCCAAAG
*
851298 AGATACTCTAACC
1 GGATACTC-AACC
851311 CCATTTTTAT
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
78 13 0.17
79 57 0.74
80 7 0.09
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (78 bp):
GGATACTCAACCTCGGCTTTATTTCTAAAACATCAATTTTCCAAAATCGAGGATACTCCAACCCC
GTTATTTCCAAAG
Found at i:858083 original size:27 final size:27
Alignment explanation
Indices: 858052--858103 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
858042 CAGATTTTGA
858052 AGAAAAGCAAAGTTGGAGTATCCCCTT
1 AGAAAAGCAAAGTTGGAGTATCCCCTT
***
858079 AGAAAAGCGGGGTTGGAGTATCCCC
1 AGAAAAGCAAAGTTGGAGTATCCCC
858104 GACAATCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.29, T:0.19
Consensus pattern (27 bp):
AGAAAAGCAAAGTTGGAGTATCCCCTT
Found at i:861441 original size:128 final size:128
Alignment explanation
Indices: 861185--861431 Score: 304
Period size: 128 Copynumber: 1.9 Consensus size: 128
861175 CTCAAAAAGT
* * * *
861185 ATCATTTCGTACCTTAATAGATACCTACAAAGATACAAAAAGTTTTTGAAATTTTTTATACCTCT
1 ATCATTTCGTACCTTAATAGAAACCGACAAAGATACAAAAAGCTTTTGAAATTCTTTATACCTCT
* * **
861250 ACGGATACCCATAGGAATATAAAAGACTAAAAATGATTAATATTTATTTATTTTTGAAAAAAA
66 ACGGATACCCATAGGAATATAAAAGACTAAAAATGAATAATATTGAAATATTTTTGAAAAAAA
* * **
861313 ATCATTTTGTACCTTAATGGAAACCCGA-AAAGATATGAAAAGCTTTTGAAA-TCTTTATACC-C
1 ATCATTTCGTACCTTAATAGAAA-CCGACAAAGATACAAAAAGCTTTTGAAATTCTTTATACCTC
* * *
861375 TATGGATACCCATAGGAATATAAAAGACCTAAAAAT-AATAGATGTTGAAATGTTTTT
65 TACGGATACCCATAGGAATATAAAAGA-CTAAAAATGAATA-ATATTGAAATATTTTT
861432 ACCAAAAAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
126 30 0.30
127 28 0.28
128 40 0.40
129 3 0.03
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.34
Consensus pattern (128 bp):
ATCATTTCGTACCTTAATAGAAACCGACAAAGATACAAAAAGCTTTTGAAATTCTTTATACCTCT
ACGGATACCCATAGGAATATAAAAGACTAAAAATGAATAATATTGAAATATTTTTGAAAAAAA
Found at i:861790 original size:24 final size:23
Alignment explanation
Indices: 861733--861790 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 23
861723 ACTAATTTAG
861733 TTTTCACTATTTTTCCTTCTTTTT
1 TTTTCACT-TTTTTCCTTCTTTTT
861757 TCTTTC-CTTTTCTTCCTT-TTTTT
1 T-TTTCACTTTT-TTCCTTCTTTTT
861780 CTTTTCACTTT
1 -TTTTCACTTT
861791 GCTAGCTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
23 12 0.40
24 14 0.47
25 4 0.13
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTTCACTTTTTTCCTTCTTTTT
Found at i:862533 original size:165 final size:161
Alignment explanation
Indices: 862249--863008 Score: 667
Period size: 165 Copynumber: 4.7 Consensus size: 161
862239 AATTTCATCA
* * * * * *
862249 AAAAAATCTAAAACTCATGAAAATGAATTAATTTTTTTAAA-TAATTTAATATG-AATCAAATAA
1 AAAAAATC-AAAAATCAAGAAAATGAATGAA-TTTTTGAAACTGATTTAATATGAAAT-AAATGA
* * * * * * * *
862312 TGATGTTCGATGAATTTTAAAAATTTAAAACTGAG-AAAATCCCTTCAAAAAAATTTACAGAGTA
63 TAATATTTGATGAAATTT-AAAATTAAAAACTAAGAAAAATCCC-TCGAAAAAATTTACGGAGTA
* * *
862376 GAAAATAC-CGTATTTTAGAAAAATGGGAGTTTTAAGG
126 -AAAA-ACTCATATTTTAGAAAAAAGGGAGTTTCAAGG
*
862413 AAAAAATCAAAAACTCAAGAAAATGAATGCATTTTTGAAGACTGATTTAATATGAAATAAATGAT
1 AAAAAATCAAAAA-TCAAGAAAATGAATGAATTTTTGAA-ACTGATTTAATATGAAATAAATGAT
* *
862478 AATATTTTATGAAATTTAAAATTAAAAACCAAGAAAAATCTCCTCGAAAAAATTTACGGAGTAAA
64 AATATTTGATGAAATTTAAAATTAAAAACTAAGAAAAATC-CCTCGAAAAAATTTACGGAGTAAA
** * *
862543 AAACTTTGTATTTT-G-GAAAATGG-G-TTCAAGG
128 AAAC-TCATATTTTAGAAAAAAGGGAGTTTCAAGG
* *
862574 AAAAAATTAAAAAATCATGAAAATGAATGAATTTTT-----T-ATTTAATATGAAATAAATGATA
1 AAAAAA-TCAAAAATCAAGAAAATGAATGAATTTTTGAAACTGATTTAATATGAAATAAATGATA
*
862633 ATATTTGATGAAATTTAAAATTAAAAACTAAGAAAAATCCCCTCGAAAAAATTTATGGAGTAAAA
65 ATATTTGATGAAATTTAAAATTAAAAACTAAGAAAAAT-CCCTCGAAAAAATTTACGGAGTAAAA
* * *
862698 AACTTCATATTTTGGAAAAAAGGGATTTTCATGG
129 AAC-TCATATTTTAGAAAAAAGGGAGTTTCAAGG
* * * *
862732 -----A-GAAAAAT-AA-AAAATGAATGAATTTTTGAAAACAGATTTAGTATAAAATAAATGATA
1 AAAAAATCAAAAATCAAGAAAATGAATGAATTTTTG-AAACTGATTTAATATGAAATAAATGATA
* * * *
862789 GTATTTGATAAAAATTAAAAATTAAAAACCAAGAAAAATCCTCTC-ATAAAAATTTACGGAGTAA
65 ATATTTGAT-GAAATTTAAAATTAAAAACTAAGAAAAATCC-CTCGA-AAAAATTTACGGAGTAA
* *
862853 AATATA-TCATA-TTTAAAAAAAAGGGAATTTCAAGG
127 AA-A-ACTCATATTTTAGAAAAAAGGGAGTTTCAAGG
* * * *
862888 AAAAAAACAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGATTTAATATGAAATAACTAAT
1 AAAAAATCAAAAATCAA-GAAAATGAATGAATTTTTG-AAACTGATTTAATATGAAATAAATGAT
* * * * *
862953 AATA--T-ATGAATTTTAAAAATTAAGAATTAAGAAAAATCCTCTTGAGAAAATTTACG
64 AATATTTGATGAAATTT-AAAATTAAAAACTAAGAAAAATCC-CTCGAAAAAATTTACG
863009 AAGAAGAAAA
Statistics
Matches: 496, Mismatches: 63, Indels: 76
0.78 0.10 0.12
Matches are distributed among these distances:
149 17 0.03
150 1 0.00
151 6 0.01
153 1 0.00
154 93 0.19
155 3 0.01
156 57 0.11
157 52 0.10
158 7 0.01
159 1 0.00
161 37 0.07
162 49 0.10
163 22 0.04
164 41 0.08
165 104 0.21
166 5 0.01
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (161 bp):
AAAAAATCAAAAATCAAGAAAATGAATGAATTTTTGAAACTGATTTAATATGAAATAAATGATAA
TATTTGATGAAATTTAAAATTAAAAACTAAGAAAAATCCCTCGAAAAAATTTACGGAGTAAAAAA
CTCATATTTTAGAAAAAAGGGAGTTTCAAGG
Found at i:862841 original size:157 final size:154
Alignment explanation
Indices: 862432--863008 Score: 564
Period size: 154 Copynumber: 3.7 Consensus size: 154
862422 AAAACTCAAG
* * *
862432 AAAATGAATGCATTTTTGAAGACTGATTTAATATGAAATAAATGATAATATTTTATGAAATTTAA
1 AAAATGAATGAATTTTTGAAAACTGATTTAATATGAAATAAATGATAATATTTGATGAAATTTAA
**
862497 AATTAAAAACCAAGAAAAAT-CTCCTCGAAAAAATTTACGGAGTAAAAAACTTTGTATTTTGG-A
66 AATTAAAAACCAAGAAAAATCCT-CTCGAAAAAATTTACGGAGTAAAAAACTTCATATTTTGGAA
*
862560 AAATGGG--TTCAAGGAAAAAATTAA
130 AAAAGGGATTTCAAGGAAAAAA-TAA
* *** *** *
862584 AAAAT-CATGAAAATGAATGAATTTTTTATTTAATATGAAATAAATGATAATATTTGATGAAATT
1 AAAATGAATG--AATTTTTGAA-AACTGATTTAATATGAAATAAATGATAATATTTGATGAAATT
* * *
862648 TAAAATTAAAAACTAAGAAAAATCCCCTCGAAAAAATTTATGGAGTAAAAAACTTCATATTTTGG
63 TAAAATTAAAAACCAAGAAAAATCCTCTCGAAAAAATTTACGGAGTAAAAAACTTCATATTTTGG
*
862713 AAAAAAGGGATTTTCATGGAGAAAAATAA
128 AAAAAAGGGA-TTTCAAGGA-AAAAATAA
* * * * * *
862742 AAAATGAATGAATTTTTGAAAACAGATTTAGTATAAAATAAATGATAGTATTTGATAAAAATTAA
1 AAAATGAATGAATTTTTGAAAACTGATTTAATATGAAATAAATGATAATATTTGAT-GAAATTTA
* **
862807 AAATTAAAAACCAAGAAAAATCCTCTC-ATAAAAATTTACGGAGTAAAATA-TATCATA-TTTAA
65 AAATTAAAAACCAAGAAAAATCCTCTCGA-AAAAATTTACGGAGTAAAAAACT-TCATATTTTGG
862869 AAAAAAGGGAATTTCAAGGAAAAAAACAAAAATGAA
128 AAAAAAGGG-ATTTCAAGG------A-AAAAAT-AA
* * *
862905 TGAAAATGAATGAATTTTTGAAAACTGATTTAATATGAAATAACTAATAATA--T-ATGAATTTT
1 --AAAATGAATGAATTTTTGAAAACTGATTTAATATGAAATAAATGATAATATTTGATGAAATTT
* ** * *
862967 AAAAATTAAGAATTAAGAAAAATCCTCTTGAGAAAATTTACG
64 -AAAATTAAAAACCAAGAAAAATCCTCTCGAAAAAATTTACG
863009 AAGAAGAAAA
Statistics
Matches: 347, Mismatches: 53, Indels: 40
0.79 0.12 0.09
Matches are distributed among these distances:
151 3 0.01
152 5 0.01
153 6 0.02
154 95 0.27
155 8 0.02
156 49 0.14
157 63 0.18
158 15 0.04
159 8 0.02
161 4 0.01
162 43 0.12
163 4 0.01
165 44 0.13
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (154 bp):
AAAATGAATGAATTTTTGAAAACTGATTTAATATGAAATAAATGATAATATTTGATGAAATTTAA
AATTAAAAACCAAGAAAAATCCTCTCGAAAAAATTTACGGAGTAAAAAACTTCATATTTTGGAAA
AAAGGGATTTCAAGGAAAAAATAA
Found at i:864001 original size:42 final size:42
Alignment explanation
Indices: 863955--864410 Score: 144
Period size: 42 Copynumber: 10.9 Consensus size: 42
863945 AGGGCTCCTA
*
863955 GGTCTAAGCCGACGGGCAGATGAAAGAAGAAGAAGTCTCTCG
1 GGTCTAAGCCGACGGGCAGACGAAAGAAGAAGAAGTCTCTCG
* * * * * * * *
863997 GGTCTGAGCCGACAGGAAAACCAAATATGAGGAAGTCTCTCG
1 GGTCTAAGCCGACGGGCAGACGAAAGAAGAAGAAGTCTCTCG
* * * * *
864039 GGTCTGAGCCAATGGG-AGA-TAAAAAATGAAGAAGTCTC-CTG
1 GGTCTAAGCCGACGGGCAGACGAAAGAA-GAAGAAGTCTCTC-G
* * * * * *
864080 GTTTTGAA-CCAACAGGCAGACGAAAGAAGAATAAGTCTCTCA
1 GGTCT-AAGCCGACGGGCAGACGAAAGAAGAAGAAGTCTCTCG
* * ** * *
864122 GG--TAAGCCGATGGGTA-AATAAAGGATGAAGAAGTCTCTTG
1 GGTCTAAGCCGACGGGCAGACGAAA-GAAGAAGAAGTCTCTCG
* * * * * *
864162 GGTCTGAA-CCAATGGGTAGAC-AAAAAATGAAGAAGTCTCCCA
1 GGTCT-AAGCCGACGGGCAGACGAAAGAA-GAAGAAGTCTCTCG
* * * * * * *
864204 AGTCTGAGCCGACGAGCAAACAAAAGATGAAGAAGTCTCTTG
1 GGTCTAAGCCGACGGGCAGACGAAAGAAGAAGAAGTCTCTCG
* * * ** ** * *
864246 CGCCTGAGCCGATAGGCAGACGATGGATGAAGAAGTCTCTCA
1 GGTCTAAGCCGACGGGCAGACGAAAGAAGAAGAAGTCTCTCG
* * * * * * * *
864288 AGCCTAAGCTGACAGGCAAACGAAA-AATGAGGACGTCTC-CTA
1 GGTCTAAGCCGACGGGCAGACGAAAGAA-GAAGAAGTCTCTC-G
* *** * * *
864330 GGTCTGAGCCGACAAACAGATGAAAGATGAAGAAGCCTCTCG
1 GGTCTAAGCCGACGGGCAGACGAAAGAAGAAGAAGTCTCTCG
* ** *
864372 GGTCGAAGTTGACGGGCAGATGAAAGATA-AAGAAGTCTC
1 GGTCTAAGCCGACGGGCAGACGAAAGA-AGAAGAAGTCTC
864411 CCAAGTTTGA
Statistics
Matches: 295, Mismatches: 99, Indels: 40
0.68 0.23 0.09
Matches are distributed among these distances:
39 6 0.02
40 27 0.09
41 26 0.09
42 221 0.75
43 15 0.05
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (42 bp):
GGTCTAAGCCGACGGGCAGACGAAAGAAGAAGAAGTCTCTCG
Found at i:864198 original size:82 final size:84
Alignment explanation
Indices: 864059--864336 Score: 197
Period size: 84 Copynumber: 3.3 Consensus size: 84
864049 AATGGGAGAT
* * * * * * *
864059 AAAAAATGAAGAAGTCTCCTGGTTTTGAACCAACAGGCAGACGAAAGAAGAATAAGTCTCTC-AG
1 AAAAGATGAAGAAGTCTCTTGGGTCTGAACCAACAGGCAGACGAAAAAAGAAGAAGTCTCCCAAG
* * * * *
864123 -GTAAGCCGATGGGTAAAT
66 TCTAAGCCGACGAGCAAAC
* ** *
864141 AAAGGATGAAGAAGTCTCTTGGGTCTGAACCAATGGGTAGAC-AAAAAATGAAGAAGTCTCCCAA
1 AAAAGATGAAGAAGTCTCTTGGGTCTGAACCAACAGGCAGACGAAAAAA-GAAGAAGTCTCCCAA
*
864205 GTCTGAGCCGACGAGCAAAC
65 GTCTAAGCCGACGAGCAAAC
* * * * * *** * *
864225 AAAAGATGAAGAAGTCTCTTGCGCCTGAGCCGATAGGCAGACGATGGATGAAGAAGTCTCTCAAG
1 AAAAGATGAAGAAGTCTCTTGGGTCTGAACCAACAGGCAGACGAAAAAAGAAGAAGTCTCCCAAG
* *
864290 CCTAAGCTGAC-AGGCAAAC
66 TCTAAGCCGACGA-GCAAAC
* * * *
864309 GAAAA-ATGAGGACGTCTCCTAGGTCTGA
1 -AAAAGATGAAGAAGTCTCTTGGGTCTGA
864337 GCCGACAAAC
Statistics
Matches: 152, Mismatches: 38, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
81 5 0.03
82 45 0.30
83 3 0.02
84 93 0.61
85 6 0.04
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.18
Consensus pattern (84 bp):
AAAAGATGAAGAAGTCTCTTGGGTCTGAACCAACAGGCAGACGAAAAAAGAAGAAGTCTCCCAAG
TCTAAGCCGACGAGCAAAC
Found at i:864619 original size:41 final size:40
Alignment explanation
Indices: 864543--864619 Score: 100
Period size: 41 Copynumber: 1.9 Consensus size: 40
864533 TCTCCCAAGC
* * * * *
864543 CTAAACCGATGGGCAACAAAAGATGAGGAAGTCTCTAGGT
1 CTAAACCAACGGGCAACAAAAGATAAAGAAATCTCTAGGT
864583 CTAAACCAACGGGCAAACAAAAGATAAAGAAATCTCT
1 CTAAACCAACGGGC-AACAAAAGATAAAGAAATCTCT
864620 CGGGACTAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 12 0.39
41 19 0.61
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (40 bp):
CTAAACCAACGGGCAACAAAAGATAAAGAAATCTCTAGGT
Found at i:864687 original size:42 final size:42
Alignment explanation
Indices: 864605--864705 Score: 96
Period size: 43 Copynumber: 2.4 Consensus size: 42
864595 GCAAACAAAA
* * * *
864605 GATAAAGAAATCTCTCGGGACTAAGCTAACGAGCAGACGATT
1 GATAAAGAAATCTCCCAGGACTAAGCCAACGAGCAAACGATT
* * *
864647 GATAAAGGAAATCTCCCAGGACTGAGCCAACG-GGAAACGATG
1 GATAAA-GAAATCTCCCAGGACTAAGCCAACGAGCAAACGATT
* **
864689 GATGAAGATGTCTCCCA
1 GATAAAGAAATCTCCCA
864706 AGCCTAAGTC
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
41 9 0.19
42 18 0.38
43 21 0.44
ACGTcount: A:0.37, C:0.21, G:0.26, T:0.17
Consensus pattern (42 bp):
GATAAAGAAATCTCCCAGGACTAAGCCAACGAGCAAACGATT
Found at i:864816 original size:42 final size:42
Alignment explanation
Indices: 864689--864824 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 42
864679 GGAAACGATG
* * * * * *
864689 GATGAAGATGTCTCCCAAGCCTAAGTCGATGGGTAAACTAAA
1 GATGAAGAAGTCTCCCAGGTCTAAGTTGATGGGTAGACAAAA
* * * **
864731 GAT-AAGGAAATCTCCCAGGTCTAAGCTGATGGATAGATGAAA
1 GATGAA-GAAGTCTCCCAGGTCTAAGTTGATGGGTAGACAAAA
* *
864773 GATGAAGAAGTCTCCCAGGTCTGAGTTGACGGGTAGACAAAA
1 GATGAAGAAGTCTCCCAGGTCTAAGTTGATGGGTAGACAAAA
*
864815 GAAGAAGAAG
1 GATGAAGAAG
864825 CCTATAATAA
Statistics
Matches: 74, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
41 2 0.03
42 70 0.95
43 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.19
Consensus pattern (42 bp):
GATGAAGAAGTCTCCCAGGTCTAAGTTGATGGGTAGACAAAA
Found at i:865548 original size:77 final size:77
Alignment explanation
Indices: 865290--865660 Score: 299
Period size: 78 Copynumber: 4.8 Consensus size: 77
865280 ATAAGAAGCC
* * * * * * *
865290 TGTGGGATA-TGCCTCTTATGGCCATGTGATGCATCAATACCATTTAGTGT-TTGGAAATGAGGG
1 TGTGGGA-AGTGCCCCTT-TGGCCATGTGATGCACCAATATCATCTAGTATCTGGGAAA-GAAGG
* *
865353 ATACGATTAGGAATG
63 ATATGATTGGGAATG
**** ** * *
865368 TGTGGGAAACATCAATCTTGGCCATGTGATGCACCAATATCATTTAGTATCTGGGAAGGAAGGAT
1 TGTGGGAAGTGCCCCT-TTGGCCATGTGATGCACCAATATCATCTAGTATCTGGGAAAGAAGGAT
* *
865433 ATGACTAGGAATG
65 ATGATTGGGAATG
* * ** *
865446 TGTGGGAAGTGTCTCTCTTAACCATGTGATGCACTAATATCATCTAGTAT-TGGGAAAGAAGGAT
1 TGTGGGAAGTGCCCCT-TTGGCCATGTGATGCACCAATATCATCTAGTATCTGGGAAAGAAGGAT
865510 ATGATTGGGAATG
65 ATGATTGGGAATG
* *
865523 TGTGGGATGTAGCCCCTTTGGCCATGTGATGCACCAACAATATCATCTAGTAT-TTGG---GAA-
1 TGTGGGAAGT-GCCCCTTTGGCCATGTGATGCA-C--CAATATCATCTAGTATCTGGGAAAGAAG
**
865583 GATATGATTGGGAACA
62 GATATGATTGGGAATG
* * * * *
865599 TGTAGGAAGTGCCCTCTTTGGCCTTGTAATGTACCAATATCATCTAGCATCTGGGAAAGAAG
1 TGTGGGAAGTGCCC-CTTTGGCCATGTGATGCACCAATATCATCTAGTATCTGGGAAAGAAG
865661 AGAATAACTA
Statistics
Matches: 239, Mismatches: 41, Indels: 26
0.78 0.13 0.08
Matches are distributed among these distances:
73 15 0.06
74 3 0.01
75 5 0.02
76 37 0.15
77 54 0.23
78 101 0.42
79 6 0.03
80 18 0.08
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (77 bp):
TGTGGGAAGTGCCCCTTTGGCCATGTGATGCACCAATATCATCTAGTATCTGGGAAAGAAGGATA
TGATTGGGAATG
Found at i:865618 original size:76 final size:74
Alignment explanation
Indices: 865385--865655 Score: 197
Period size: 77 Copynumber: 3.5 Consensus size: 74
865375 AACATCAATC
* * * * * ** *
865385 TTGGCCATGTGATGCACCAATATCATTTAGTATCTGGGAAGGAAGGATATGACTAGGAATGTGTG
1 TTGGCCATGTAATGCACCAATATCATCTAGTAT-T-TG--GGAAGGATATGATTGGGAACATGTA
* *
865450 GGAAGT-GTCTCT
62 GGAAGTAGCCCCT
** * * * ** *
865462 CTTAACCATGTGATGCACTAATATCATCTAGTATTGGGAAAGAAGGATATGATTGGGAATGTGTG
1 -TTGGCCATGTAATGCACCAATATCATCTAGTATTTGG---GAAGGATATGATTGGGAACATGTA
*
865527 GGATGTAGCCCCT
62 GGAAGTAGCCCCT
*
865540 TTGGCCATGTGATGCACCAACAATATCATCTAGTATTTGGGAA-GATATGATTGGGAACATGTAG
1 TTGGCCATGTAATGCA-C--CAATATCATCTAGTATTTGGGAAGGATATGATTGGGAACATGTAG
865604 GAAGT-GCCCTCT
63 GAAGTAGCCC-CT
* * * *
865616 TTGGCCTTGTAATGTACCAATATCATCTAGCATCTGGGAA
1 TTGGCCATGTAATGCACCAATATCATCTAGTATTTGGGAA
865656 AGAAGAGAAT
Statistics
Matches: 163, Mismatches: 22, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
73 21 0.13
74 1 0.01
75 5 0.03
76 39 0.24
77 45 0.28
78 34 0.21
80 18 0.11
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (74 bp):
TTGGCCATGTAATGCACCAATATCATCTAGTATTTGGGAAGGATATGATTGGGAACATGTAGGAA
GTAGCCCCT
Found at i:874418 original size:20 final size:20
Alignment explanation
Indices: 874393--874466 Score: 107
Period size: 20 Copynumber: 3.7 Consensus size: 20
874383 TTTACCCAGA
874393 TGTATCGATACATTTTG-T-AT
1 TGTATCGATACA--TTGCTCAT
874413 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
*
874433 TGTATCGATACATGGCTCAT
1 TGTATCGATACATTGCTCAT
874453 TGTATCGATACATT
1 TGTATCGATACATT
874467 CAAGCATTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
18 3 0.06
19 1 0.02
20 46 0.92
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:876831 original size:51 final size:51
Alignment explanation
Indices: 876766--876934 Score: 205
Period size: 51 Copynumber: 3.3 Consensus size: 51
876756 ATTTTTCATC
* ** **
876766 TCGGGGATACTCCAA-TCCCGGTTCCATTTCCAAAGCATCAATTTTTCTTAA
1 TCGGGGATACTCCAACT-CCGATTTTATTTCCAAAGCATCAATTTTTCACAA
* * * *
876817 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAGCATCGATTTATCGCAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAGCATCAATTTTTCACAA
* * *
876868 TCGGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAGCATCAATTTTTCACAA
*
876919 TTGGGGATACTCCAAC
1 TCGGGGATACTCCAAC
876935 CCCGTTATTT
Statistics
Matches: 101, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
51 100 0.99
52 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTTTATTTCCAAAGCATCAATTTTTCACAA
Found at i:877170 original size:78 final size:80
Alignment explanation
Indices: 876870--877164 Score: 323
Period size: 79 Copynumber: 3.8 Consensus size: 80
876860 TATCGCAATC
* * * *
876870 GGGGATACTCCAA-CTCTGATTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAA
1 GGGGATACTCCAACCTCGGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCCAA
*
876934 CCCCGTTATTTTCAC
66 CCCCGTTATTTTCAA
** * ** * * *
876949 GGGGATACTCCAACCTCGG-CCTTATTTCTAAAGCGTCGATTTTTCACAATCGGAGATACTCCAA
1 GGGGATACTCCAACCTCGGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCCAA
* *
877013 CCCCATTATTTTCGA
66 CCCCGTTATTTTCAA
* * * *
877028 GGGGATACTCCAACC-CCGATTTTATTT-TCAAAACACCAATTTTCTATAATCGGGGATACTCTA
1 GGGGATACTCCAACCTCGGATTTTATTTCT-AAAACACCAATTTTCCACAATCGGGGATACTCCA
*
877091 ACCCCGTTATTTCCAA
65 ACCCCGTTATTTTCAA
* * * *
877107 GGAGATACTCCAACCTC-GA-TTTATTTCTAAAACATCAATTTTCCATAATCGGGTATAC
1 GGGGATACTCCAACCTCGGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATAC
877165 CCTAACTCCG
Statistics
Matches: 179, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
78 37 0.21
79 137 0.77
80 5 0.03
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (80 bp):
GGGGATACTCCAACCTCGGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCCAA
CCCCGTTATTTTCAA
Found at i:877241 original size:28 final size:28
Alignment explanation
Indices: 877208--877283 Score: 118
Period size: 28 Copynumber: 2.7 Consensus size: 28
877198 TTTCACAATC
877208 GGGGATACTCCAACCCCGTTATTTCATCA
1 GGGGATACTCCAACCCCGTTATTTC-TCA
*
877237 -GGGATACTCCAACCCCGTTATTTCTGA
1 GGGGATACTCCAACCCCGTTATTTCTCA
*
877264 GGGGATACTCCAGCCCCGTT
1 GGGGATACTCCAACCCCGTT
877284 GTTATCTCCA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 2 0.05
28 42 0.95
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCTCA
Found at i:883555 original size:61 final size:61
Alignment explanation
Indices: 883362--884297 Score: 477
Period size: 60 Copynumber: 15.3 Consensus size: 61
883352 TAGCCCTTCC
* *
883362 AGTCCTCAAAGAGCAGGA-TGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT
* *
883423 AGTCCTCAAAGAGCAGGA-TGCCTTTTTTCTTTTTAAAGCCCACACAAGGTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACTGCC--TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
*
883485 AGTCCTCAAAGAGCAGGACT-CCTTTTCCTTTTAAAGCCAACACAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
** * * * *
883546 AGTCCTCAAAGAGCAAAAC-ACCTTCTCC-TTCAAAGCCCACACAAGTTGGTGGCACCTCTA
1 AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT-TT
* * *
883606 AGTCCTCAAAGAGTAGGAC-ACACTTTATTTTCCTCTT----CCC-C-C---TT-GT----CCTC
1 AGTCCTCAAAGAGCAGGACTGC-C----TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT-
**
883656 AA
60 TT
** * ** * * *
883658 AG--AGC-AGGACGCACTTCATTTCCTTCTTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATT
1 AGTCCTCAAAGA-GCA--GGA-CTGC--CTTTT-CCTTTTAAAGCCCACACAAGTTGGTGGCA-C
*
883720 TTTCT
58 CTT-T
* ** *
883725 AGTCCTCAAAGAGCATGAC-GTATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTCTA
1 AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT-TT
* * * * *** * **
883786 AGTCCTCAAAGAGTAGGAC-ACAC-TTT-ATTTT----CCTC-CTCCCCTT--T-G-TCCTCAA
1 AGTCCTCAAAGAGCAGGACTGC-CTTTTCCTTTTAAAGCC-CACACAAGTTGGTGGCACCT-TT
** * ** * * *
883838 AG--AGC-AGGACGCACTTCATTTCCTTATTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATT
1 AGTCCTCAAAGA-GCA--GGACTGCC---TTTT-CCTTTTAAAGCCCACACAAGTTGGTGGCA-C
*
883900 TTTCT
58 CTT-T
* *
883905 AGTCCTCAAAGAGCAGGAC-GTCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTT
* *
883966 AGTCCTCAAAGAGCAGGAC-GCCTTTTTTTTTCTTTTTAAAGCCCACAAAAGTTGGTGGCACCTT
1 AGTCCTCAAAGAGCAGGACTGCC-----TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACC-T
884030 TT
60 TT
* * * * * * **
884032 AGTCCTCAAAGAGTAGGA-TGCCTTCTCC-TTCAAAGCTCACGCGAGTTGGTGGCACCCTCC
1 AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
*** * *
884092 AGTCCTCAAAGAGCAGGACGTTTTTTTTTCTTTTTAAAGCCTACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGAC--TGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * **
884155 AGTCCTCAAAGAGCAGGA-TGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCC
1 AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * * *
884216 AGTCCTCAAAGAGCAGGAC-ACCTTTTTTCTTTTCGAAGCCCACACAAGTTGGTGGCACCTCCT
1 AGTCCTCAAAGAGCAGGACTGCC-TTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCT-TT
884279 AGTCCTCAAAGAGCAGGAC
1 AGTCCTCAAAGAGCAGGAC
884298 GCACTTTATT
Statistics
Matches: 666, Mismatches: 126, Indels: 164
0.70 0.13 0.17
Matches are distributed among these distances:
49 6 0.01
50 6 0.01
51 4 0.01
52 22 0.03
53 2 0.00
54 2 0.00
55 1 0.00
56 14 0.02
57 4 0.01
58 5 0.01
59 3 0.00
60 147 0.22
61 128 0.19
62 130 0.20
63 84 0.13
64 22 0.03
65 6 0.01
66 57 0.09
67 9 0.01
69 8 0.01
70 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (61 bp):
AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:883784 original size:180 final size:180
Alignment explanation
Indices: 883506--883984 Score: 766
Period size: 180 Copynumber: 2.7 Consensus size: 180
883496 AGCAGGACTC
* *** * **
883506 CTTTT-CCTTTTAAAGCCAACACAAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAAAACACCT
1 CTTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAAGACGTCT
* *
883569 TCTCC-TTCAAAGCCCACACAAGTTGGTGGCACCTCTAAGTCCTCAAAGAGTAGGACACACTTTA
66 TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTCTAAGTCCTCAAAGAGTAGGACACACTTTA
*
883633 TTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTT
131 TTTTCCTCCTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTT
* *
883683 CTTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCATGACGTAT
1 CTTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAAGACGTCT
883748 TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTCTAAGTCCTCAAAGAGTAGGACACACTTTA
66 TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTCTAAGTCCTCAAAGAGTAGGACACACTTTA
*
883813 TTTTCCTCCTCCCCTTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTT
131 TTTTCCTCCTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTT
* *
883863 ATTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAGGACGTCT
1 CTTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAAGACGTCT
* * * *
883928 TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGAC
66 TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTCTAAGTCCTCAAAGAGTAGGAC
883985 GCCTTTTTTT
Statistics
Matches: 279, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
177 5 0.02
178 30 0.11
179 23 0.08
180 221 0.79
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (180 bp):
CTTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAAGACGTCT
TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTCTAAGTCCTCAAAGAGTAGGACACACTTTA
TTTTCCTCCTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTT
Found at i:884172 original size:63 final size:62
Alignment explanation
Indices: 883871--884298 Score: 411
Period size: 63 Copynumber: 6.8 Consensus size: 62
883861 TTATTTTCCC
** *
883871 TTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAGGAC--GTCTTTTCC
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CCTT-TAGTCCTCAAAGAGCAGGACGTGTCTTTTCT
* * *
883933 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCAC-CTTTAGTCCTCAAAGAGCAGGACG---TGTCTTTTC
883998 T
62 T
* * * *
883999 TTTTAAAGCCCACAAAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGA--TGCCTTCTC-
1 TTTTAAAGCCCACACAAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCAGGACGTGTCTTTTCT
* * * * * ** * *
884059 CTTCAAAGCTCACGCGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTTTTTTTTTCT
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACG-TGTCTTTTCT
* * *
884123 TTTTAAAGCCTACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGA--TGCCTTTTCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGTGTCTTTTCT
* * ** *** *
884183 TTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACACCTTTTTTCT
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGTGTCTTTTCT
** *
884246 TTTCGAAGCCCACACAAGTTGGTGGCACCTCCTAGTCCTCAAAGAGCAGGACG
1 TTTTAAAGCCCACACAAGTTGGTGGCACCT-TTAGTCCTCAAAGAGCAGGACG
884299 CACTTTATTT
Statistics
Matches: 300, Mismatches: 50, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
60 69 0.23
61 48 0.16
62 33 0.11
63 76 0.25
64 21 0.07
66 53 0.18
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (62 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGTGTCTTTTCT
Found at i:884201 original size:124 final size:124
Alignment explanation
Indices: 883871--884296 Score: 586
Period size: 124 Copynumber: 3.4 Consensus size: 124
883861 TTATTTTCCC
** * *
883871 TTTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAGGACGTCTTTTCCTTT
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CCTT-TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTT
* * ** **
883936 TAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTCT
64 CAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACG--TTTTTTTTTCT
* * *
883999 TTTTAAAGCCCACAAAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTCTCC-TTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTC
* *
884063 AAAGCTCACGCGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTTTTTTTTTCT
65 AAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTTTTTTTTTCT
*
884123 TTTTAAAGCCTACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCA
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCA
***
884188 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGAC-ACCTTTTTTCT
66 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTTTTTTTTTCT
** *
884246 TTTCGAAGCCCACACAAGTTGGTGGCACCTCCTAGTCCTCAAAGAGCAGGA
1 TTTTAAAGCCCACACAAGTTGGTGGCACCT-TTAGTCCTCAAAGAGCAGGA
884297 CGCACTTTAT
Statistics
Matches: 267, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
123 64 0.24
124 106 0.40
126 44 0.16
127 25 0.09
128 28 0.10
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (124 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCA
AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTTTTTTTTTCT
Found at i:884430 original size:88 final size:86
Alignment explanation
Indices: 884281--884578 Score: 370
Period size: 88 Copynumber: 3.4 Consensus size: 86
884271 CACCTCCTAG
* *
884281 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACT
1 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCTC-TGTCCTCAAAGAGTAGGACGCACT
*
884346 TCA-TTTCCTTTTTTTCCCTTTTA
65 TTATTTTCC-TTTTTT-CCTTTTA
** * * *
884369 TCCTCAAAGAATAGGATGCACTTTATTTTCCTTTTCTCCTCTGTCCTCAAAGAGAAAGACGCACT
1 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTC-CCTCTGTCCTCAAAGAGTAGGACGCACT
*
884434 TTATTTTCCTTTTTTCCTTTTG
65 TTATTTTCCTTTTTTCCTTTTA
* * *
884456 TCCTCAAAGAGCAGGACGCACTTCATTTTCTTCTTTTCCCTTCTAGTTCTCAAAGAGTAGGACAC
1 TCCTCAAAGAGCAGGACGCACTTTATTTTC--CTTTTCCC-TCT-GTCCTCAAAGAGTAGGACGC
884521 ACTTTATTTTCC-TTTTTCC-TTTA
62 ACTTTATTTTCCTTTTTTCCTTTTA
*
884544 TCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCTTTT
1 TCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTTTT
884579 TTTCCTTTGT
Statistics
Matches: 183, Mismatches: 20, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
86 5 0.03
87 34 0.19
88 92 0.50
89 24 0.13
90 28 0.15
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (86 bp):
TCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCTCTGTCCTCAAAGAGTAGGACGCACTT
TATTTTCCTTTTTTCCTTTTA
Found at i:884604 original size:44 final size:43
Alignment explanation
Indices: 884280--884605 Score: 329
Period size: 43 Copynumber: 7.4 Consensus size: 43
884270 GCACCTCCTA
* * ** *
884280 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCCTT
1 GTCCTCAAAGAGTAGGACGCACTTTATTTTCCTTTTTTCCTTT
*
884323 GTCCTCAAAGAGTAGGACGCACTTCA-TTTCCTTTTTTTCCCTTTT
1 GTCCTCAAAGAGTAGGACGCACTTTATTTTCC-TTTTTT-CC-TTT
* * * * *
884368 ATCCTCAAAGAATAGGATGCACTTTATTTTCCTTTTCTCCTCT
1 GTCCTCAAAGAGTAGGACGCACTTTATTTTCCTTTTTTCCTTT
* *
884411 GTCCTCAAAGAGAAAGACGCACTTTATTTTCCTTTTTTCCTTTT
1 GTCCTCAAAGAGTAGGACGCACTTTATTTTCCTTTTTTCC-TTT
* *
884455 GTCCTCAAAGAGCAGGACGCACTTCATTTT-CTTCTTTTCCCTTCT
1 GTCCTCAAAGAGTAGGACGCACTTTATTTTCCTT-TTTT-CCTT-T
* *
884500 AGTTCTCAAAGAGTAGGACACACTTTATTTTCC-TTTTTCCTTT
1 -GTCCTCAAAGAGTAGGACGCACTTTATTTTCCTTTTTTCCTTT
* * *
884543 ATCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTTTTCCTTT
1 GTCCTCAAAGAGTAGGACGCACTTT-ATTTTCC-TTTTTTCCTTT
*
884587 GTCCTC-GAGAAGTAGGACG
1 GTCCTCAAAG-AGTAGGACG
884606 TACTCTTTTT
Statistics
Matches: 235, Mismatches: 34, Indels: 27
0.79 0.11 0.09
Matches are distributed among these distances:
41 3 0.01
42 28 0.12
43 69 0.29
44 66 0.28
45 36 0.15
46 32 0.14
47 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (43 bp):
GTCCTCAAAGAGTAGGACGCACTTTATTTTCCTTTTTTCCTTT
Found at i:884604 original size:132 final size:131
Alignment explanation
Indices: 884281--884605 Score: 422
Period size: 132 Copynumber: 2.5 Consensus size: 131
884271 CACCTCCTAG
* ** *
884281 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACT
1 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACT
* * **
884346 TCATTTCCTTTTTTTCCCTTTTATCCTCAAAGAATAGGATGCACTTTATTTTCCTTTTCTCCTCT
66 TCATTTCCTTCTTTTCCCTTCTATCCTCAAAGAATAGGACACACTTTATTTTCCTTTTCTCCTCT
*
884411 G
131 A
* * *
884412 TCCTCAAAGAGAAAGACGCACTTTATTTTCCTTTTTTCCTTTTGTCCTCAAAGAGCAGGACGCAC
1 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTTTCC-TTTGTCCTCAAAGAGTAGGACGCAC
* * *
884477 TTCATTTTCTTCTTTTCCCTTCTAGTTCTCAAAGAGTAGGACACACTTTATTTTCCTTTT-TCCT
65 TTCATTTCCTTCTTTTCCCTTCTA-TCCTCAAAGAATAGGACACACTTTATTTTCCTTTTCTCCT
*
884541 TTA
129 CTA
* *
884544 TCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTTTTCCTTTGTCCTC-GAGAAGTAGGACG
1 TCCTCAAAGAGCAGGACGCACTTT-ATTTTCC-TTTTTTCCTTTGTCCTCAAAG-AGTAGGACG
884606 TACTCTTTTT
Statistics
Matches: 168, Mismatches: 21, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
131 39 0.23
132 90 0.54
133 39 0.23
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (131 bp):
TCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACT
TCATTTCCTTCTTTTCCCTTCTATCCTCAAAGAATAGGACACACTTTATTTTCCTTTTCTCCTCT
A
Found at i:884708 original size:40 final size:41
Alignment explanation
Indices: 884612--884710 Score: 121
Period size: 40 Copynumber: 2.4 Consensus size: 41
884602 GACGTACTCT
* * * *
884612 TTTTCACTTTGTCCTAAAGGAGCAGGACACTTTCCTTTTCTT
1 TTTTC-CTTTGTCCTCAAGGAGCAAGACACTTTCCTATTCTC
*
884654 TTTTCCTTTGTCCTCAAGGAGCAAGAC-CTATTTC-ATTCTC
1 TTTTCCTTTGTCCTCAAGGAGCAAGACACT-TTCCTATTCTC
884694 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
884711 AAAGTGGGAC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 23 0.45
41 23 0.45
42 5 0.10
ACGTcount: A:0.18, C:0.26, G:0.12, T:0.43
Consensus pattern (41 bp):
TTTTCCTTTGTCCTCAAGGAGCAAGACACTTTCCTATTCTC
Found at i:885340 original size:20 final size:20
Alignment explanation
Indices: 885315--885442 Score: 101
Period size: 20 Copynumber: 6.8 Consensus size: 20
885305 TTTTCACAAT
*
885315 TTGTATCGATACATTGTTTA
1 TTGTATCGATACATTGTTCA
* *
885335 TTGTATCAATACATTGCTCA
1 TTGTATCGATACATTGTTCA
* *
885355 TTGTATCGATACATGGGTCA
1 TTGTATCGATACATTGTTCA
*
885375 TTCTATCGATACATTG----
1 TTGTATCGATACATTGTTCA
* *
885391 -TG--TCGATACATGGCTCA
1 TTGTATCGATACATTGTTCA
885408 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
* *
885428 ATGTACCGATACATT
1 TTGTATCGATACATT
885443 TAGGCATTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
13 10 0.12
15 1 0.01
18 2 0.02
19 1 0.01
20 72 0.84
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:885397 original size:33 final size:33
Alignment explanation
Indices: 885353--885422 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
885343 ATACATTGCT
*
885353 CATTGTATCGATACATGGGTCATTCTATCGATA
1 CATTGTATCGATACATGGCTCATTCTATCGATA
* *
885386 CATTGTGTCGATACATGGCTCATTGTATCGATA
1 CATTGTATCGATACATGGCTCATTCTATCGATA
885419 CATT
1 CATT
885423 TTACAATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (33 bp):
CATTGTATCGATACATGGCTCATTCTATCGATA
Found at i:887814 original size:51 final size:51
Alignment explanation
Indices: 887759--887902 Score: 184
Period size: 51 Copynumber: 2.8 Consensus size: 51
887749 TCCCGGGTCC
** *
887759 ATTTCCAAAGCATCAATTTTTCTTAATCGG-GCATACTTCAACTCCGATTTT
1 ATTTCCAAAGCATCAATTTTTCGCAATCGGAG-ATACTCCAACTCCGATTTT
* *
887810 ATTTCTAAAGCATCAATTTATCGCAATCGGAGATACTCCAACTCCGATTTT
1 ATTTCCAAAGCATCAATTTTTCGCAATCGGAGATACTCCAACTCCGATTTT
* * *
887861 ATTTCCAAAACA-CTAATTTTTCACAATTGGAGATACTCCAAC
1 ATTTCCAAAGCATC-AATTTTTCGCAATCGGAGATACTCCAAC
887903 CCCGTTATTA
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
50 1 0.01
51 79 0.98
52 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.35
Consensus pattern (51 bp):
ATTTCCAAAGCATCAATTTTTCGCAATCGGAGATACTCCAACTCCGATTTT
Found at i:888007 original size:28 final size:28
Alignment explanation
Indices: 887967--888042 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
887957 TTTTTTCATA
*
887967 ATCGGGGGTACTCCAACCCCGTTATGTC
1 ATCGGGGATACTCCAACCCCGTTATGTC
* * *
887995 ATCGGGGATACTCAAATCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATGTC
***
888023 CGAGGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
888043 CATTTTATTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATGTC
Found at i:888088 original size:51 final size:51
Alignment explanation
Indices: 888026--888144 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
888016 TTATTTCCGA
* * *
888026 GGGGATACTCCAACCCCCATTTTATTTCTACAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCCATTTTATTTCCAAAATACCAATTTCTCACAATC
** * *
888077 GGGGATACTCCAACTTCGATTTTATTTCCAAAATACCAATTTCTCATAATC
1 GGGGATACTCCAACCCCCATTTTATTTCCAAAATACCAATTTCTCACAATC
*
888128 GGGGATACTTCAACCCC
1 GGGGATACTCCAACCCC
888145 GTTATTTTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCCATTTTATTTCCAAAATACCAATTTCTCACAATC
Found at i:888159 original size:79 final size:78
Alignment explanation
Indices: 888076--888372 Score: 292
Period size: 79 Copynumber: 3.8 Consensus size: 78
888066 TTTTCACAAT
** *
888076 CGGGGATACTCCAACTTCGATTTTATTTCCAAAATACCAATTTCTCATAATCGGGGATACTTCAA
1 CGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTT-TCATAATCGGGGATACTTCAA
888141 CCCCGTTATTTTCA
65 CCCCGTTATTTTCA
* *** * * * * * * *
888155 CGGGGATACTCCAACCTCGGCCTTATTTCTAAAGCATCGATTTTTCACAATCGGAGATACTCCAA
1 CGGGGATACTCCAACCCCGATTTTATTTCCAAAACA-CCAATTTTCATAATCGGGGATACTTCAA
* *
888220 CCCCATTATTTTTGA
65 CCCCGTTA-TTTTCA
* *
888235 -GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATAC-TCTA
1 CGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTC-ATAATCGGGGATACTTCAA
*
888298 CCCCTGTTATTTCCA
65 CCCC-GTTATTTTCA
* * * * * * *
888313 AGGGGATACTCCAATCCTGATTTTATTTCTAGAACATCAATTTTCCATAATTGGGGATAC
1 CGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTT-CATAATCGGGGATAC
888373 CCTAACTCTA
Statistics
Matches: 175, Mismatches: 37, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
78 17 0.10
79 147 0.84
80 11 0.06
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (78 bp):
CGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCATAATCGGGGATACTTCAAC
CCCGTTATTTTCA
Found at i:888476 original size:28 final size:29
Alignment explanation
Indices: 888416--888491 Score: 102
Period size: 28 Copynumber: 2.7 Consensus size: 29
888406 TTTCACAATC
*
888416 GGGGATACTCCAACCCGGTTATTTTATCA
1 GGGGATACTCCAACCCCGTTATTTTATCA
* *
888445 -GGGATACTCCAACCCCGTTA-TTTCTGA
1 GGGGATACTCCAACCCCGTTATTTTATCA
*
888472 GGGGATACTCCAGCCCCGTT
1 GGGGATACTCCAACCCCGTT
888492 GTTATCTCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 5 0.12
28 37 0.88
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (29 bp):
GGGGATACTCCAACCCCGTTATTTTATCA
Found at i:889402 original size:13 final size:13
Alignment explanation
Indices: 889384--889409 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
889374 CAATTTTTTG
889384 TGTATCGATACAT
1 TGTATCGATACAT
889397 TGTATCGATACAT
1 TGTATCGATACAT
889410 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:889474 original size:21 final size:21
Alignment explanation
Indices: 889448--889523 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
889438 CTGCCAAGAA
*
889448 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
889469 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
889489 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
889510 ATGTATCGATACAT
1 ATGTATCGATACAT
889524 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:889494 original size:20 final size:20
Alignment explanation
Indices: 889469--889541 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
889459 CATCTTTTTT
889469 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
889489 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
889510 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
889530 ATGTATCGATAC
1 ATGTATCGATAC
889542 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:889505 original size:41 final size:41
Alignment explanation
Indices: 889448--889541 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
889438 CTGCCAAGAA
*
889448 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
889489 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
889530 ATGTATCGATAC
1 ATGTATCGATAC
889542 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:890210 original size:36 final size:36
Alignment explanation
Indices: 890166--890237 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
890156 TTTATTAATA
*
890166 AATCTCCCCCTTAATCAAGTAATTCATATCAAAATT
1 AATCTCCCCATTAATCAAGTAATTCATATCAAAATT
890202 AATCTCCCCATTAATCAAGTAATTCATATCAAAATT
1 AATCTCCCCATTAATCAAGTAATTCATATCAAAATT
890238 TATTTGCACT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.33
Consensus pattern (36 bp):
AATCTCCCCATTAATCAAGTAATTCATATCAAAATT
Found at i:892038 original size:13 final size:13
Alignment explanation
Indices: 892020--892058 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
892010 ATAATCACCC
*
892020 TGTATCGATACAG
1 TGTATCGATACAA
892033 TGTATCGATACAA
1 TGTATCGATACAA
892046 TGTATCGATACAA
1 TGTATCGATACAA
892059 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:894161 original size:15 final size:15
Alignment explanation
Indices: 894141--894171 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
894131 ATTTCGTTTG
*
894141 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
894156 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
894171 G
1 G
894172 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:898251 original size:13 final size:13
Alignment explanation
Indices: 898233--898258 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
898223 CAATTTTTTG
898233 TGTATCGATACAT
1 TGTATCGATACAT
898246 TGTATCGATACAT
1 TGTATCGATACAT
898259 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:898323 original size:21 final size:21
Alignment explanation
Indices: 898297--898372 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
898287 CTGCCAAGAA
*
898297 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
898318 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
898338 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
898359 ATGTATCGATACAT
1 ATGTATCGATACAT
898373 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:898343 original size:20 final size:20
Alignment explanation
Indices: 898318--898390 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
898308 CATCTTTTTT
898318 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
898338 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
898359 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
898379 ATGTATCGATAC
1 ATGTATCGATAC
898391 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:898354 original size:41 final size:41
Alignment explanation
Indices: 898297--898390 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
898287 CTGCCAAGAA
*
898297 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
898338 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
898379 ATGTATCGATAC
1 ATGTATCGATAC
898391 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:902422 original size:52 final size:52
Alignment explanation
Indices: 902342--902461 Score: 204
Period size: 52 Copynumber: 2.3 Consensus size: 52
902332 AAAAGTTACT
* *
902342 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAGATATGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATATGCC
* *
902394 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATATGCC
902446 TGCATGTATCGATACA
1 TGCATGTATCGATACA
902462 AAGATCGGTG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATATGCC
Found at i:902474 original size:52 final size:52
Alignment explanation
Indices: 902342--902481 Score: 176
Period size: 52 Copynumber: 2.7 Consensus size: 52
902332 AAAAGTTACT
* *
902342 TGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAGATATGCC
1 TGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATATGCC
*** * *
902394 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATATGCC
*
902446 TGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 TGCATGTATCGATACATAAGAT-AGTGTATCGATACA
902482 ATGTATCGAT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 4 0.05
52 73 0.95
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (52 bp):
TGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATATGCC
Found at i:902488 original size:13 final size:13
Alignment explanation
Indices: 902470--902494 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
902460 CAAAGATCGG
902470 TGTATCGATACAA
1 TGTATCGATACAA
902483 TGTATCGATACA
1 TGTATCGATACA
902495 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:902575 original size:13 final size:13
Alignment explanation
Indices: 902557--902581 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
902547 CAAAAAAATA
902557 TGTATCGATACAT
1 TGTATCGATACAT
902570 TGTATCGATACA
1 TGTATCGATACA
902582 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:902576 original size:33 final size:33
Alignment explanation
Indices: 902539--902601 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
902529 GCTTAAATTA
902539 TATCGATACAAAAAAATATGTATCGATACATTG
1 TATCGATACAAAAAAATATGTATCGATACATTG
* ***
902572 TATCGATACAACATTTTATGTATCGATACA
1 TATCGATACAAAAAAATATGTATCGATACA
902602 AATCGTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.33
Consensus pattern (33 bp):
TATCGATACAAAAAAATATGTATCGATACATTG
Found at i:903247 original size:19 final size:19
Alignment explanation
Indices: 903220--903275 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
903210 TGTATCAATA
*
903220 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGCT
* *
903239 CATTATATCGATACATACT
1 CATTGTATCGATACATGCT
903258 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
903276 AAATTAGTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:910513 original size:13 final size:13
Alignment explanation
Indices: 910495--910522 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
910485 TTTTCACAAT
910495 TTGTATCGATACA
1 TTGTATCGATACA
910508 TTGTATCGATACA
1 TTGTATCGATACA
910521 TT
1 TT
910523 CTGGGTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:910563 original size:20 final size:19
Alignment explanation
Indices: 910538--910632 Score: 109
Period size: 20 Copynumber: 4.8 Consensus size: 19
910528 TTTACCAAGA
*
910538 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTCT-CAT
*
910558 TGTATCAATACATTGCTCAT
1 TGTATCGATACATT-CTCAT
*
910578 TGTATCGATACATGGCTCAT
1 TGTATCGATACAT-TCTCAT
* *
910598 TGTATCGATACATTTTACAA
1 TGTATCGATACATTCT-CAT
910618 TGTATCGATACATTC
1 TGTATCGATACATTC
910633 AGGCATTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
19 1 0.02
20 62 0.97
21 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATTCTCAT
Found at i:913165 original size:51 final size:51
Alignment explanation
Indices: 913092--913209 Score: 157
Period size: 51 Copynumber: 2.3 Consensus size: 51
913082 TATTTTTGAA
* * * *
913092 GGGATACTCTAACCCCATTTTTATTTCTAAAATACCAATTTTTCATAATCG
1 GGGATACTCCAACCCCATTTTTATTTCCAAAACACCAATTTTTCACAATCG
* * *
913143 GGGATACTCCAACTCCGA-TTTTATTTCCAAAACACTAATTTTTCACAATTG
1 GGGATACTCCAAC-CCCATTTTTATTTCCAAAACACCAATTTTTCACAATCG
913194 GGGATACTCCAACCCC
1 GGGATACTCCAACCCC
913210 GTTATTTCCA
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.03
51 53 0.91
52 3 0.05
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (51 bp):
GGGATACTCCAACCCCATTTTTATTTCCAAAACACCAATTTTTCACAATCG
Found at i:913228 original size:79 final size:79
Alignment explanation
Indices: 913142--913445 Score: 331
Period size: 79 Copynumber: 3.9 Consensus size: 79
913132 TTTCATAATC
* * *
913142 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATTGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
913207 CCCGTTATTTCCAA
66 CCCGTTATTTCCAA
* * ** * ** * *
913221 GGTGATACTTCAACCCCGACCTTATTTCTAAGTCATCGATTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
* *
913286 CTCGTTATTTTCAA
66 CCCGTTATTTCCAA
* * * * * * **
913300 GGGGACACTCCAACCCCGATTTCATTTTCAAAATACCGATTTTT-ATAATTAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
** *
913364 CCTTTTATTTCCGA
66 CCCGTTATTTCCAA
* * * * *
913378 GGGGATACTCCAACCCCGGTTTTATTTCTAGAACACCAATTTTTCATAATCGGGGATACTCCAGC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
913443 CCC
66 CCC
913446 ATTGTTATCT
Statistics
Matches: 178, Mismatches: 46, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
78 62 0.35
79 116 0.65
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
CCCGTTATTTCCAA
Found at i:913429 original size:157 final size:158
Alignment explanation
Indices: 913142--913440 Score: 386
Period size: 157 Copynumber: 1.9 Consensus size: 158
913132 TTTCATAATC
* * * * *
913142 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATTGGGGATACTCCAAC
1 GGGGACACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTTCACAATTAGGGATACTCCAAC
* * * * *
913207 CCCGTTATTTCCAAGGTGATACTTCAACCCCGACCTTATTTCTAAGTCATCGATTTTTCACAATC
66 CCCGTTATTTCCAAGGGGATACTCCAACCCCGACCTTATTTCTAAGACACCAATTTTTCACAATC
913272 GGGGATACTCCAACCTCGTTATTTTCAA
131 GGGGATACTCCAACCTCGTTATTTTCAA
* * * *
913300 GGGGACACTCCAACCCCGATTTCATTTTCAAAATACCGATTTTT-ATAATTAGGGATACTCCAAC
1 GGGGACACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTTCACAATTAGGGATACTCCAAC
** * *** *
913364 CCTTTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCT-AGAACACCAATTTTTCATAAT
66 CCCGTTATTTCCAAGGGGATACTCCAACCCCGACCTTATTTCTAAG-ACACCAATTTTTCACAAT
913428 CGGGGATACTCCA
130 CGGGGATACTCCA
913441 GCCCCATTGT
Statistics
Matches: 119, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
156 2 0.02
157 80 0.67
158 37 0.31
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (158 bp):
GGGGACACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTTCACAATTAGGGATACTCCAAC
CCCGTTATTTCCAAGGGGATACTCCAACCCCGACCTTATTTCTAAGACACCAATTTTTCACAATC
GGGGATACTCCAACCTCGTTATTTTCAA
Found at i:917983 original size:19 final size:20
Alignment explanation
Indices: 917931--917983 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
917921 CTACCAGTTT
*
917931 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAA
* *
917951 TATGAATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
*
917970 CATGTATTGATACA
1 CATGTATCGATACA
917984 TTAAAGCATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:919749 original size:62 final size:62
Alignment explanation
Indices: 919652--919777 Score: 209
Period size: 62 Copynumber: 2.0 Consensus size: 62
919642 AGAAAGGTAA
* *
919652 TCCATCCGAGCATCTCAAGGGTAGGAAGGTAGATGAAGTTGAAAGACCTTAGATAGTTCATG
1 TCCATCCGAACATCTCAAGGGTAGGAAGGTAGATGAAGTTGAAAGACCTTAGATACTTCATG
*
919714 TCCATCCGAACATCTCAAGGGTA-GAGAGGTAGATGAAGTTGAAAGACTTTAGATACTTCATG
1 TCCATCCGAACATCTCAAGGGTAGGA-AGGTAGATGAAGTTGAAAGACCTTAGATACTTCATG
919776 TC
1 TC
919778 GACTGCGCGA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 2 0.03
62 58 0.97
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (62 bp):
TCCATCCGAACATCTCAAGGGTAGGAAGGTAGATGAAGTTGAAAGACCTTAGATACTTCATG
Found at i:923740 original size:20 final size:20
Alignment explanation
Indices: 923712--923899 Score: 92
Period size: 20 Copynumber: 8.9 Consensus size: 20
923702 GTAAAAAGAC
*
923712 AGAACGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* *
923732 AGAATGTATCGATAAATTCA
1 AGAATGTATCGATACATTGA
* *
923752 CGTATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* * *
923772 AAAATGTATTGATCATCTAGGTAAAAAGA
1 AGAATGTATCGAT-A-C-A--T----TGA
* *
923801 TAGAATGTATCAACACATTGA
1 -AGAATGTATCGATACATTGA
* *
923822 AGAATGTATCGAAACATTCA
1 AGAATGTATCGATACATTGA
* * *
923842 TA-CATGTACCGATACATTAA
1 -AGAATGTATCGATACATTGA
* *
923862 AAAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
923882 TA-CATGTATCGATACATT
1 -AGAATGTATCGATACATT
923900 TTTCAATGTT
Statistics
Matches: 127, Mismatches: 28, Indels: 26
0.70 0.15 0.14
Matches are distributed among these distances:
19 1 0.01
20 103 0.81
21 5 0.04
22 1 0.01
23 1 0.01
25 2 0.02
27 1 0.01
28 1 0.01
29 3 0.02
30 9 0.07
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Done.