Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1292
Parameters: 2 7 7 80 10 50 1000
Length:  82536

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2957--3037
27
3.1
27
60
20
64
22
16
18
43
1.88
2950--3049
50
2.0
50
100
0
200
22
18
16
44
1.87
2999--4891
469
4.0
474
86
2
2574
36
14
18
31
1.91
6517--6609
24
4.2
23
71
18
72
44
2
44
9
1.49
6508--6626
42
2.8
42
89
0
175
44
2
44
8
1.47
16215--16324
42
2.6
42
89
0
166
10
45
2
41
1.52
16243--16310
21
3.2
21
70
15
68
13
44
2
39
1.59
16254--16321
21
3.3
19
71
16
64
11
47
1
39
1.49
17781--26285
475
18.0
476
88
2
12063
35
14
18
31
1.91
17810--20378
158
16.3
158
66
10
952
35
14
18
31
1.92
20393--26285
951
6.2
951
89
2
8626
35
14
18
31
1.91
20432--22967
158
16.0
158
66
11
534
35
14
18
31
1.91
27844--27919
12
6.9
11
75
15
52
39
2
48
9
1.49
27843--27928
24
3.8
24
72
17
85
41
2
45
10
1.51
27834--27952
42
2.8
42
92
0
193
42
2
46
8
1.47
32036--33151
476
2.3
476
90
0
1714
34
14
19
31
1.92
34769--34891
42
2.9
42
87
2
167
42
3
44
9
1.53
40103--40127
12
2.1
12
100
0
50
52
8
32
8
1.60
40123--62422
476
47.3
474
80
9
23305
34
14
19
31
1.92
41501--41525
12
2.1
12
100
0
50
52
8
32
8
1.60
42898--42922
12
2.1
12
100
0
50
52
8
32
8
1.60
41528--44033
922
2.7
936
86
5
3422
34
14
19
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44994--45018
12
2.1
12
100
0
50
52
8
32
8
1.60
46391--46415
12
2.1
12
100
0
50
52
8
32
8
1.60
45014--62422
922
18.7
928
85
5
22672
35
14
19
31
1.91
47788--47812
12
2.1
12
100
0
50
52
8
32
8
1.60
49186--49210
12
2.1
12
100
0
50
52
8
32
8
1.60
50583--50607
12
2.1
12
100
0
50
52
8
32
8
1.60
51980--52004
12
2.1
12
100
0
50
52
8
32
8
1.60
53378--53402
12
2.1
12
100
0
50
52
8
32
8
1.60
54775--54799
12
2.1
12
100
0
50
52
8
32
8
1.60
56173--56197
12
2.1
12
100
0
50
52
8
32
8
1.60
57570--57594
12
2.1
12
100
0
50
52
8
32
8
1.60
58492--58516
12
2.1
12
100
0
50
52
8
32
8
1.60
59889--59913
12
2.1
12
100
0
50
52
8
32
8
1.60
61286--61310
12
2.1
12
100
0
50
52
8
32
8
1.60
64039--64161
42
2.9
42
87
2
167
42
3
44
9
1.53
69387--69411
12
2.1
12
100
0
50
52
8
32
8
1.60
69414--70780
475
2.9
475
88
2
1819
34
14
19
31
1.92
70784--70808
12
2.1
12
100
0
50
52
8
32
8
1.60
70903--82516
159
73.3
157
65
12
1993
35
14
18
31
1.91
70811--82536
475
24.7
475
91
0
18450
35
14
18
31
1.91
71198--82351
158
70.4
157
64
15
1133
35
14
18
31
1.91
70811--82536
951
12.3
951
93
0
18599
35
14
18
31
1.91

Tables:   1

The End!