genome.fa.s1296.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1296
Parameters: 2 7 7 80 10 50 1000
Length:  83545

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202--281	39	2.1	38	83	4	99	47	13	18	20	1.82
275--361	45	2.0	44	84	6	113	40	8	28	22	1.83
453--983	122	4.3	127	84	7	645	32	18	24	24	1.97
491--983	249	2.0	245	85	6	665	31	19	24	24	1.98
491--980	61	8.0	62	82	9	558	31	19	24	25	1.98
2329--2386	29	2.0	29	83	6	73	12	25	24	37	1.90
4045--4122	37	2.1	37	81	13	90	46	6	3	43	1.47
7318--7468	52	2.9	52	86	0	212	33	14	19	33	1.92
7457--7481	13	1.9	13	100	0	50	36	16	16	32	1.90
7545--7569	13	1.9	13	100	0	50	32	16	16	36	1.90
8424--8655	95	2.4	93	87	7	313	32	17	24	25	1.96
8429--8663	48	4.9	48	81	8	264	31	17	24	25	1.97
8683--8806	28	4.3	28	83	7	135	16	15	30	37	1.90
8849--9022	29	6.0	29	82	6	181	24	17	29	28	1.97
8847--9022	57	3.0	59	79	4	185	25	17	29	28	1.97
8856--9026	86	2.0	86	83	2	218	23	17	29	29	1.97
8733--9024	30	9.7	29	74	13	189	27	15	28	28	1.96
12345--12469	52	2.4	52	95	0	223	28	17	18	36	1.94
12345--12489	52	2.8	51	89	4	211	29	17	18	34	1.94
12478--12502	13	1.9	13	100	0	50	36	16	16	32	1.90
12567--12591	13	1.9	13	100	0	50	32	16	16	36	1.90
12545--12611	33	2.0	33	88	0	98	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14016--14116	1	101.0	1	76	0	94	0	0	11	88	0.53
14016--14115	11	9.8	10	88	7	132	0	0	12	88	0.53
14016--14118	31	3.3	30	86	10	154	0	0	12	87	0.55
14016--14118	42	2.5	42	89	7	158	0	0	12	87	0.55
27918--28066	52	2.9	51	87	4	217	30	16	19	32	1.94
28055--28079	13	1.9	13	100	0	50	36	16	16	32	1.90
28141--28165	13	1.9	13	100	0	50	32	16	16	36	1.90
30556--30617	28	2.2	28	82	8	81	12	17	9	59	1.59
33017--33088	28	2.6	28	86	0	90	25	19	33	22	1.97
33076--33296	104	2.1	104	80	5	243	33	11	24	30	1.91
33280--33355	27	2.8	26	88	9	100	21	22	34	22	1.97
33077--33461	52	7.3	52	69	12	214	32	12	25	29	1.92
32966--33466	263	1.9	262	89	2	772	31	13	26	28	1.94
35805--35871	33	2.0	33	85	0	89	43	14	14	26	1.85
35982--36038	21	2.7	21	97	0	105	36	19	10	33	1.86
36043--36071	13	2.2	13	100	0	58	20	0	0	79	0.74
43762--43878	58	2.0	58	88	0	171	28	20	22	29	1.98
44512--44545	16	2.2	16	89	5	52	58	0	0	41	0.98
44481--44605	59	2.1	59	86	2	171	52	4	4	40	1.39
44496--44626	59	2.2	59	82	5	158	51	3	3	40	1.38
46171--46210	17	2.4	17	80	12	55	65	0	5	30	1.14
46314--46350	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47714--47750	12	2.9	12	88	11	56	78	0	2	18	0.87
48116--48151	17	2.1	17	90	10	56	75	5	11	8	1.19
48116--48152	18	2.1	17	90	5	56	75	5	10	8	1.17
54241--54283	2	21.5	2	100	0	86	48	0	0	51	1.00
64256--64287	7	4.6	7	100	0	64	25	0	0	75	0.81
65273--65310	16	2.4	16	95	0	67	78	0	0	21	0.74
65277--65310	8	4.4	8	85	7	52	79	0	0	20	0.73
76444--76522	37	2.2	36	79	4	88	46	2	5	45	1.38
76768--76802	15	2.4	14	86	9	52	31	8	0	60	1.27
77549--77580	2	16.0	2	100	0	64	50	0	0	50	1.00
78028--78063	2	18.0	2	100	0	72	50	0	0	50	1.00
82773--82813	3	13.7	3	100	0	82	68	0	0	31	0.90

Tables:   1

The End!