Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1297
Parameters: 2 7 7 80 10 50 1000
Length:  31377

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3163--3198
18
1.9
19
88
5
56
47
2
2
47
1.31
4027--4142
55
2.1
56
93
3
198
44
6
6
42
1.55
4290--4326
2
18.5
2
94
0
65
45
0
2
51
1.15
7530--8072
282
1.9
281
94
1
962
35
14
17
32
1.90
9495--9551
20
2.7
21
89
5
80
45
14
14
26
1.82
10631--10673
21
2.1
20
82
4
50
48
0
2
48
1.14
11490--11527
17
2.2
17
86
9
51
44
0
0
55
0.99
11790--11833
14
3.1
14
78
15
54
34
0
0
65
0.93
11798--11843
24
2.0
22
83
8
56
30
0
2
67
1.03
12146--12198
22
2.4
21
80
17
63
50
0
1
47
1.12
12152--12198
24
2.0
24
88
12
71
51
0
2
46
1.13
12504--12550
22
2.0
24
88
12
71
38
0
0
61
0.96
13299--13333
2
17.0
2
88
5
52
48
5
0
45
1.26
13794--13838
22
2.1
21
84
8
56
60
0
0
40
0.97
17539--17619
32
2.5
32
82
5
110
58
0
0
41
0.98
17548--17610
18
3.8
17
75
25
71
55
0
0
44
0.99
17546--17646
16
6.4
16
68
15
68
58
0
0
41
0.98
17538--17651
46
2.4
49
82
13
143
60
0
0
39
0.97
17797--17842
24
2.0
24
83
12
60
32
2
2
63
1.19
22333--22392
11
5.9
10
77
14
52
63
0
1
35
1.05
22302--22404
32
3.7
29
71
25
78
59
0
2
37
1.13
22854--22920
32
2.1
33
86
8
93
50
19
4
25
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23045--23071
6
4.5
6
100
0
54
51
0
0
48
1.00
23421--23498
13
6.3
11
72
22
57
66
0
1
32
1.00
23423--23498
22
3.5
22
77
12
70
67
0
1
31
0.99
23451--23492
12
3.7
12
87
12
54
64
0
0
35
0.94
23427--23501
29
3.0
24
77
20
82
65
0
1
33
1.01
23444--23501
29
2.0
30
86
6
84
63
0
0
36
0.94
24092--24133
21
2.0
21
86
13
61
40
0
0
59
0.97
24904--24957
20
2.7
19
75
11
54
37
5
0
57
1.22
25122--25169
22
2.2
22
84
0
60
39
0
0
60
0.97
25429--25471
21
2.1
21
86
4
61
41
0
0
58
0.98
27622--27674
19
2.8
17
78
16
52
45
0
0
54
0.99
27936--27965
15
2.1
14
93
6
51
76
0
0
23
0.78
29844--29895
16
3.0
16
79
17
59
50
1
0
48
1.12
29859--29919
21
2.9
21
83
13
65
49
3
1
45
1.28
29850--29901
16
2.8
18
81
18
63
50
1
0
48
1.12

Tables:   1

The End!