Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1299
Parameters: 2 7 7 80 10 50 1000
Length:  24053

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
637--681
6
8.0
6
80
11
51
0
48
11
40
1.39
2262--2303
1
42.0
1
95
0
75
2
0
97
0
0.16
2263--2457
6
32.7
6
68
15
61
0
0
77
22
0.81
2263--2443
10
17.9
10
70
18
58
0
0
77
22
0.81
2273--2470
37
5.1
38
68
13
118
0
0
75
24
0.80
2284--2533
29
8.3
29
68
19
99
0
0
71
28
0.86
2290--2512
60
3.9
55
76
17
161
0
0
71
28
0.86
2346--2576
62
3.7
61
74
15
183
0
0
70
29
0.88
2498--2561
23
2.7
23
78
7
76
0
0
68
31
0.90
2417--2587
14
11.7
14
69
20
59
0
0
67
32
0.91
2299--2618
13
24.0
13
66
19
67
0
0
69
30
0.89
2564--2640
33
2.3
34
82
8
86
1
0
64
33
1.01
2617--2658
23
1.9
21
81
18
50
2
0
52
45
1.13
2707--2760
16
3.5
16
73
17
51
1
0
59
38
1.08
2753--2819
21
3.0
22
78
12
66
0
0
62
37
0.95
2753--2820
26
2.6
26
77
13
68
0
0
61
38
0.96
2799--2867
25
2.8
23
76
8
66
2
0
59
37
1.12
2892--3228
11
26.2
14
81
11
82
0
0
87
11
0.58
2856--2991
29
4.6
29
73
13
82
0
0
66
33
0.97
2987--3400
1
414.0
1
85
0
495
1
0
91
7
0.50
3404--3537
21
6.2
21
80
15
125
84
15
0
0
0.63
3402--3535
9
15.4
9
78
15
117
84
15
0
0
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3404--3535
31
4.2
31
77
16
137
84
15
0
0
0.61
3417--3535
47
2.5
45
84
12
159
86
13
0
0
0.57
3417--3535
45
2.8
43
83
7
161
86
13
0
0
0.57
3403--3529
64
2.0
64
84
9
170
84
15
0
0
0.63
3417--3514
1
98.0
1
79
0
97
88
11
0
0
0.51
3565--3633
28
2.5
26
76
6
66
0
0
47
52
1.00
3819--3926
8
12.5
8
75
15
83
0
0
80
17
0.82
3819--3928
12
8.8
12
73
12
78
0
0
80
18
0.83
3823--3925
4
26.8
4
71
14
58
0
0
79
18
0.84
3849--3916
19
3.7
19
75
5
61
1
0
75
23
0.89
3824--3925
27
4.0
26
73
13
95
0
0
79
18
0.85
3974--4016
18
2.5
18
88
7
63
60
39
0
0
0.97
4060--4124
33
1.9
35
81
12
82
38
56
4
0
1.20
4197--4253
1
57.0
1
78
0
51
0
0
12
87
0.54
4196--4304
6
18.0
6
73
21
70
0
0
18
80
0.76
4196--4317
21
5.6
21
74
12
88
2
0
16
81
0.80
4198--4316
20
5.7
20
76
13
91
2
0
15
81
0.80
4197--4311
19
6.3
19
74
14
68
2
0
16
80
0.81
4347--4498
1
152.0
1
76
0
106
3
0
11
85
0.71
4359--4494
52
2.6
52
81
5
159
2
0
12
84
0.73
4349--4552
10
20.1
10
74
16
129
2
0
15
81
0.80
4471--4560
22
3.8
22
72
22
74
1
0
22
76
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4348--4550
18
11.3
18
73
17
113
2
0
14
82
0.79
4346--4558
12
16.0
14
73
19
95
2
0
15
81
0.81
4346--4549
38
5.6
37
74
16
133
2
0
15
81
0.80
4598--4653
3
18.3
3
79
17
62
3
33
0
62
1.12
4601--4644
16
2.8
16
89
6
63
4
31
0
63
1.14
4760--4811
14
3.4
16
74
15
56
1
71
0
26
0.97
4750--4795
23
2.0
23
87
12
67
0
73
0
26
0.83
4752--4810
13
4.5
13
78
15
59
1
74
0
23
0.91
4758--4813
23
2.5
23
76
23
57
1
71
0
26
0.96
5301--5339
12
2.9
13
85
14
53
79
0
17
2
0.84
5361--5420
24
2.4
26
76
17
65
31
1
0
66
1.01
5670--5697
14
2.0
14
100
0
56
28
7
7
57
1.52
6317--6379
14
4.4
14
76
9
65
46
0
0
53
1.00
6318--6379
28
2.2
29
80
8
74
46
0
0
53
1.00
6484--6524
17
2.4
17
87
4
55
7
12
4
75
1.16
6725--6766
13
3.4
12
81
12
50
30
2
0
66
1.04
8072--8140
25
2.7
25
80
14
63
36
2
2
57
1.28
8379--8418
15
2.5
16
88
8
55
57
0
0
42
0.98
8379--8421
16
2.6
17
85
10
63
55
0
0
44
0.99
8501--8564
24
2.5
25
78
17
69
65
4
1
28
1.21
8896--8955
23
2.7
24
77
12
65
66
1
5
26
1.21
9413--9467
23
2.4
23
76
14
51
32
0
1
65
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9425--9469
16
3.1
16
69
24
53
28
0
2
68
1.01
9527--9587
19
3.2
19
75
9
61
34
1
4
59
1.29
10564--10599
3
12.3
3
94
5
65
36
0
0
63
0.94
13083--13119
2
18.5
2
94
0
65
51
2
0
45
1.15
13499--13553
24
2.3
22
77
17
56
9
21
0
69
1.16
14767--15336
32
17.8
32
92
0
899
16
18
34
30
1.93
15319--16219
27
33.0
27
92
2
1466
27
14
35
22
1.93
15319--16219
82
11.0
81
92
3
1466
27
14
35
22
1.93
15319--16219
109
8.3
108
92
3
1466
27
14
35
22
1.93
16239--16296
30
1.9
31
89
3
91
32
15
27
24
1.95
23673--23713
2
20.5
2
94
0
73
51
2
0
46
1.14

Tables:   1

The End!