Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2744999
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.26
Warning! 506982 characters in sequence are not A, C, G, or T
File 1 of 15
Found at i:2382 original size:20 final size:20
Alignment explanation
Indices: 2357--2429 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2347 CAATTTAAAA
2357 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2377 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2398 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2418 GTATCGATACAT
1 GTATCGATACAT
2430 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2449 original size:42 final size:41
Alignment explanation
Indices: 2357--2451 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
2347 CAATTTAAAA
*
2357 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2398 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAAGAT
2440 GTATCGATACAT
1 GTATCGATACAT
2452 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2508 original size:13 final size:13
Alignment explanation
Indices: 2490--2515 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2480 TACAGCAAGT
2490 ATGTATCGATACA
1 ATGTATCGATACA
2503 ATGTATCGATACA
1 ATGTATCGATACA
2516 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4149 original size:476 final size:475
Alignment explanation
Indices: 3259--8216 Score: 5596
Period size: 476 Copynumber: 10.5 Consensus size: 475
3249 GGTTAATAAG
* * * * * *
3259 CTTTCAATTAGGATACATGACATCGACACATTGGTGTTGCAAGAAAAGCATTTCTTTCAGCCATT
1 CTTTC-ATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTT
* * *
3324 TTTAATAGAATCAATGTTTGTCTCTTAAATAAG----AC----ATAGTCATACTAATCCCCATTC
65 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTC
* * * *
3381 TTTT-TAGAATTAGGCACCCTAAACTTAGTCTTCTTATAAGGATACACGATATTGATGCTTTTGT
130 TTTTCAAG-ATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGT
*
3445 TTCGTAAGAAAGGGTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAATTGGGAC
194 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTT-ATAAAGTCTAAGTTCGTGCCTCAATTGGGAC
* * *
3509 AAATATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGTACTACAAACACATTCTCCTT
258 AAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTT
* * *
3574 ATCAAGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
323 ATTAGGATAAATGATATTGATGATTTTCTTTTGCTTG-AAATCTTTTCTTTGCCCTATTTTCCTT
* * * * *
3639 AATATCAAAGTTCTTCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCTATTCTTTTCA
387 AAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCA
3704 TGATTAGGAA-CAAGAAACACATTC
452 TGATTAGGAACCAA-AAACACATTC
* * *
3728 CTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACTGTTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTT
* *
3793 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATAGTCATACAAATCCCTATTCT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCT
* * * *
3858 TCTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATACTGAAGCATTGGTTT
131 TTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * ** *
3923 TGTAAGAAAGGCTTTCTTCCTACCAATTTTTATAAAGCCTAACTTCGTGCCTTAGCTGTGACAAA
196 CGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGGGACAAA
* * * * * *
3988 CATGGATTCTAGTAACGATCTTCATTCTTTTTGTAATTAGGCACTATAAACATATTCTCCTCATT
261 CATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTATT
*
4053 AGGATAAATGATATT-ATTGATTTTTTTTTGCTTGAAATTCTTTTCTTTGCCCTATTTTCCTTAA
326 AGGATAAATGATATTGA-TGATTTTCTTTTGCTTGAAA-TCTTTTCTTTGCCCTATTTTCCTTAA
* * * * * * *
4117 AATCAAAGTTCATCTCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATCCCTTTAATG
389 AATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATG
*
4182 ATTGGGAACCAAAAACACATTC
454 ATTAGGAACCAAAAACACATTC
* * * *
4204 CATTCAATAGG--ACAT---ATT-A----AT-GTAG-C-C-AGAAAAGCATTTCTTTCAACCATT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGT-GTCGCAAGAAAAGCATTTCTTTCAACCGTT
* *
4255 TTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAAAAGTCATACTAATCCCTATTC
65 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTC
* * * * **
4320 TTTT-TAGAATTAGGCACCATAAACTTAGTTTTCTCATAAGGATACAAGATATTGATGCTTTTAT
130 TTTTCAAG-ATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGT
** * * ** * *
4384 TTCGTAAGAAAGATTTTCTTCGCACTAATTTTGGTAAAGTCTAAGTTCATGCCTCAATTAGGACA
194 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGGGACA
* *
4449 AACATGGATTCTAGTAATGATCTTTATTCATTTTCTGATTAGGTACTATAAACACATTCTCCTTA
259 AACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTA
* * * *
4514 TCAAGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTACCCTATTTTCCTTA
324 TTAGGATAAATGATATTGATGATTTTCTTTTGCTTG-AAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
4579 AAATTAAAGTTCATCCCTTAAATAAAGTAAGCATTGAATCTCGTAATAGACTCCATTCTTTTCAT
388 AAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAT
* *
4644 GATTAGGAA-TAAGAAATACATTC
453 GATTAGGAACCAA-AAACACATTC
* * * * * *
4667 CTTTTATTAGGACACATGACATTGATGCTTTGATGTCGTAAGAAAAGCATTTCTTTCAATCGTTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTT
* * *
4732 TTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAATAATACTAAT-CCTAATTC
66 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCT-ATTC
* *
4796 TTTTC-AGCATTAGGCACCATAAACTTAGTTTTCTAATAAGGATACCCGATATTGATGCTTTGGT
130 TTTTCAAG-ATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGT
* * * *
4860 TTCGTAAGAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCTCAATTAGGACA
194 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGGGACA
* * *
4925 AACATGGATTCTAGTAATGATCTTCGTTCATTTTCTGATTAGGCACAACAAACACATTCTCCTTA
259 AACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTA
* *
4990 TTAGGATAAATGGTATTGATGATTTTCTTTTG-TAGGGAAATCTTTTCTTTGCCCTATTTTCCTT
324 TTAGGATAAATGATATTGATGATTTTCTTTTGCT--TGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * *
5054 AACATTAAACTTCATCCCTTAAATAAGGCAAGTATTGATTCTCGTGACCGTCTCCATTTTTTTCA
387 AAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCA
* *
5119 TGAAT-GAAACCAAAAACACATTC
452 TGATTAGGAACCAAAAACACATTC
* * * * *
5142 CTTTCATTAGGATACATGCCATTAATGCTTTGGTATCGTAAGAAAAGCATTTCTTTCAACCGTTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTT
* * * *
5207 TTGATTGAATCAAAGTTTGTCTCTTAAATAAAAC-AACTATGAATAGTCAGACTAATACC-ATTC
66 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATAGTCATACTAATCCCTATTC
* * * * * * * * *
5270 TTTTGAGGAATAGACACCATAAACTTAGTCTTCCT-ACAAGGATATACGATATTGAAGCATTAGT
130 TTTTCAAGATTAGGCACCATAAACTTAGTCTT-CTAATAAGGATACACGATATTGATGCTTTGGT
* * * * * **
5334 TTTGTAATAAAGACTATCTTCCCTA-AAATTTTGT-TAAAGTCTAAGTTCGTGCCTCAATTATGA
194 TTCGTAAGAAAGGCTTTCTTCCC-ACCAATTTT-TATAAAGTCTAAGTTCGTGCCTCAATTGGGA
* * * *** * **
5397 CAAACTTGGATTTTAGTAATTATCTTCATTCGCATTATGATTACTCACTATAAACACATTCTCCT
257 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCT
* * * *
5462 CATTAGGATAAATGATATT-ATTGATTTTTTTTTGGTTGGAAATCTTTTCTTTGCCCCATTTTCC
322 TATTAGGATAAATGATATTGA-TGATTTTCTTTTGCTT-GAAATCTTTTCTTTGCCCTATTTTCC
* * *
5526 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCCTTT
385 TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
* *
5591 CACGATTAGGAACCAAAAACACATTT
450 CATGATTAGGAACCAAAAACACATTC
* * * * * *
5617 CATTCAATAGGATACATGATATTGACGCTTTAGTATCGTC-GGAAAAGCATTTCTTTCAACCGTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCG-CAAGAAAAGCATTTCTTTCAACCGTT
* * * * * *
5681 TTTGATAGAATCAAAGTTT-TCCTTTTAATTAAGAAAAACATGAAGAATCATATTAATCCCTATT
65 TTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATT
* * * *
5745 CTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAATGATACACGATATTGAAGCATTGGT
129 CTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGT
* * * * * * *
5810 TTCGTACGAAAGGCTTTCTTCCTACCAATTTTTCTAAAGCCTAAGCTT-ATGCCTCAACTGTGAC
194 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAG-TTCGTGCCTCAATTGGGAC
* * * *
5874 AGACATGGATTCTAGTAATGATCTTCTTTCATTTTGTTG-TTAGGCACTATAAACATATTCTCCT
258 AAACATGGATTCTAGTAATGATCTTCATTCATTTT-CTGATTAGGCACTATAAACACATTCTCCT
* * ** *
5938 AATTAGGATAAATAATATTGATG-TATTTCTTTTGCAAGAAAATCTTTTCTTTGCCTTATTTTCC
322 TATTAGGATAAATGATATTGATGAT-TTTCTTTTGCTTG-AAATCTTTTCTTTGCCCTATTTTCC
** * * * *
6002 CCAAAATTAAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACCGTCTCCATTTTTTT
385 TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
* * *
6067 CATGAAT-GGAACCAGAAAGACATTC
450 CATGATTAGGAACCAAAAACACATTC
* * * * * * * *
6092 CTTTCATTAGGATACACGACATCGACACATTGGTGTTGTAAGAAAAACATTTCTTTCAACCATTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTT
* *
6157 TTAATAGAATCAATGTTTGTCTCTTAAATAAG----AC----ATAGTCATACTAAT-CCTCATTC
66 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCT-ATTC
* ** * * *
6213 TTTT-TAGAATTAGGCACCCCAAACTTAGTCTTCTCATAAAGATACACGATATTGATGCTTTTGT
130 TTTTCAAG-ATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGT
* * *
6277 TTCGTAAGAAAGGGTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCATGCCTCAAATGGGAC
194 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTT-ATAAAGTCTAAGTTCGTGCCTCAATTGGGAC
* * * *
6341 GAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCATTATAAACCCATTCTCTTT
258 AAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTT
* ** * *
6406 GTTAAAATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTAGTTTT-CT
323 ATTAGGATAAATGATATTGATGATTTTCTTTTGC-TTGAAATCTTTTCTTTGCCCTA-TTTTCCT
* * * *
6470 TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCTATTGTTTTC
386 TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTC
6535 ATGATTAGGAA-CAAGAAACACATTC
451 ATGATTAGGAACCAA-AAACACATTC
* * * *
6560 CTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCAGTT-TTTCAACTGTTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTT
* * * * *
6624 TTGATTGAATCAAAGTCTGTCTCTTAAATAAGACAAACATGAATAATCATACTAGTCCCAATTCT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCT
* * * * *
6689 TTTC-AGTATTAGGTACTAGAAACTTAGTTTTCTAATAAGGACACACGATATTGATGCTTTGGAT
131 TTTCAAG-ATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGG-T
* * *
6753 TT-GTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG-CTTACGTTCGTGCCTCATTTGGGAC
194 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTC-TAAGTTCGTGCCTCAATTGGGAC
* * * * *
6816 AATCA-GGTATTCTAGTAATGATCTTTATTCATTTTTTGATTAGGCACAACAAACACATTCTCCT
258 AAACATGG-ATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCT
* * * * *
6880 TATTAAGATAAAAGGTATTGTTGATTTTCTTTTG-TATAGAAATCTTTTCTTTGCCCTTTTTTCC
322 TATTAGGATAAATGATATTGATGATTTTCTTTTGCT-T-GAAATCTTTTCTTTGCCCTATTTTCC
* * ** *
6944 TT-AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTGTCGTAACAGTCTCTGTTCCTTT
385 TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
*
7008 CATGATTAGGAACCAAAGACACATTC
450 CATGATTAGGAACCAAAAACACATTC
* * * * * *
7034 CATTCAATAGGGTACATGACATTGACGCTTTGATATCGTAAGAAAAGCATTTCTTTCAACCGTTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTT
** * * * *
7099 TTGATAGAATTGAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATATTAATCCCAATTAA
66 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATT-C
* * * * * * * * *
7164 TTTT-AGGATTAGGCACCATAAACTTAGTCTTTTTAGAAGGGTAAATGATATTGAAG-TACTGGT
130 TTTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCT-TTGGT
* * ** * * * *
7227 TTTGTGAGAAAGGCTTTCTTCCCACTGATTTTTGTGAAGTCTAAATTTGTGCCTCAATTGGGACA
194 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGGGACA
* * *
7292 AACCTGGATTCTAGTATATGATCTTCATTCATTTTCTGATTAGGCATTATAAACACATTCTTCTT
259 AACATGGATTCTAGTA-ATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTT
* * * * * *
7357 ATTAGGATAAATGATATTGATGATTTTCTTTTACATGGAATTCTTTTCTTTCCCCTATTTTGCTC
323 ATTAGGATAAATGATATTGATGATTTTCTTTTGC-TTGAAATCTTTTCTTTGCCCTATTTTCCTT
** *
7422 AAAATTAAAGTTCATCATTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTCTTTTCA
387 AAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCA
*
7487 TGATTAGGAACTAAAAACACATTC
452 TGATTAGGAACCAAAAACACATTC
* * * * * *
7511 TTTTCATCAGGATTCATGACATTGACGCTTTGGGGTCGCAATAAAAGCATTTCTTT-AACCATTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTT
* * * * * *
7575 TTGATTGAATCAAACTTTGTCTCTTAAATAAGACGAATATGAATAATCATACTAATCCCAATTCT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCT
* * * * * * * *
7640 TTTCAGGATTAGGCACCATTAACATACTTTTCTAATAAGGACACATGATATTGATGTTTTGGTTT
131 TTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTT
* * * * *
7705 CATAAGAAAGGCTTTCTTCCCACCAATTTCTATAAAGCCTAAGTTCGAGCCTCAATTAGGACAAA
196 CGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGGGACAAA
* * * * *
7770 CATGGATTCTAGTAATGATCTTCATTTC-TTTTCTAATTAGGCACAACAAACACAGTCTCTTTAT
261 CATGGATTCTAGTAATGATCTTCA-TTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTAT
* * * *
7834 TAGGATAAAAGTTATTGATGATTTTCTTTTGCATGAAAATCCTTTCTTTGCCCTATTTTCCTTAA
325 TAGGATAAATGATATTGATGATTTTCTTTTGCTTG-AAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * *
7899 CATTAAAGTTCATCCCTTAAAAAAGGCAAGTAGTGATTCTCGTAACAGTCACCATTCTTTTCATG
389 AATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATG
7964 ATT-GAGAACCAAAAACACATT-
454 ATTAG-GAACCAAAAACACATTC
7985 C---C--T----T---T--CA-TGACGCTTTGGTGTCGCAAGAAAAGCATTT-TTCTCAACCGTT
1 CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTT-TCAACCGTT
* *
8034 TTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA-TAATACC-ATTC
65 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTC
* * * * *
8097 TTTTGAGGAATAGGCACCATAAACTTAGTCTTCCT-TTAAGGATACACGATATTGAAGCTTTGGT
130 TTTTCAAGATTAGGCACCATAAACTTAGTCTT-CTAATAAGGATACACGATATTGATGCTTTGGT
* * *** *
8161 TTTGTAATAAAGGCTTTCTTCCCTTAAATTTTGT-TAAAGTCTATGTTCGTGCCTCA
194 TTCGTAAGAAAGGCTTTCTTCCCACCAATTTT-TATAAAGTCTAAGTTCGTGCCTCA
8217 CTATAAACAC
Statistics
Matches: 3790, Mismatches: 590, Indels: 229
0.82 0.13 0.05
Matches are distributed among these distances:
458 100 0.03
459 38 0.01
460 56 0.01
462 5 0.00
463 374 0.10
464 5 0.00
465 8 0.00
466 10 0.00
467 326 0.09
468 145 0.04
469 6 0.00
470 1 0.00
471 8 0.00
472 1 0.00
473 4 0.00
474 414 0.11
475 908 0.24
476 1243 0.33
477 137 0.04
478 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTT
TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCT
TTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTT
CGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGGGACAAA
CATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTATT
AGGATAAATGATATTGATGATTTTCTTTTGCTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGAT
TAGGAACCAAAAACACATTC
Found at i:8618 original size:19 final size:19
Alignment explanation
Indices: 8594--8724 Score: 136
Period size: 19 Copynumber: 7.8 Consensus size: 19
8584 ATTCAACTAT
8594 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
8613 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
8627 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
8645 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
8659 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
8677 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
8691 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
8709 TTGTATCGATACATAA
1 TTGTATCGATACATAA
8725 TTCGCTACTG
Statistics
Matches: 94, Mismatches: 0, Indels: 36
0.72 0.00 0.28
Matches are distributed among these distances:
13 33 0.35
15 6 0.06
17 6 0.06
19 49 0.52
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:8632 original size:13 final size:13
Alignment explanation
Indices: 8614--8702 Score: 70
Period size: 13 Copynumber: 5.9 Consensus size: 13
8604 ACATAAGTGT
8614 TGTATCGATACAA
1 TGTATCGATACAA
8627 TGTATCGATACATAA
1 TGTATCGATAC--AA
8642 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
8659 TGTATCGATACATAA
1 TGTATCGATAC--AA
8674 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
8691 TGTATCGATACA
1 TGTATCGATACA
8703 TAAGTGTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 34 0.53
15 4 0.06
17 4 0.06
19 22 0.34
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:8636 original size:32 final size:32
Alignment explanation
Indices: 8595--8721 Score: 254
Period size: 32 Copynumber: 4.0 Consensus size: 32
8585 TTCAACTATT
8595 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
8627 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
8659 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
8691 TGTATCGATACATAAGTGTTGTATCGATACA
1 TGTATCGATACATAAGTGTTGTATCGATACA
8722 TAATTCGCTA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 95 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:12616 original size:158 final size:158
Alignment explanation
Indices: 12271--12760 Score: 698
Period size: 158 Copynumber: 3.1 Consensus size: 158
12261 CTCTTCACTG
* * ** ** * * **
12271 GGATAAATGATATTGATGACTTTCTTTTGCATAAAAATCGTTTCTTTGCCCCATTTTCTTTAAAA
1 GGATACATGACATTGATGTTTTTCTTTTGCATGGAAATCGTTTCGTTGCCCTATTTTCCATAAAA
* * * *
12336 TTAAAGTTCATCATTTAGAA-AAGGCAAGCATTGATTCTGGTAACAGTCTCTATTCATTTCATGA
66 TTAAAGTTCATCACTTA-AATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTATTTCATGA
*
12400 TTGGGAACCAAAAACACATTCCTTTCAATA
130 TTGGGAACCAAAAACACATTCCTTTC-TTA
12430 GGATACATGACATTGATGTTTTTCTTTTGCATGGAAATCGTTTCGTTGCCCTATTTTCCATAAAA
1 GGATACATGACATTGATGTTTTTCTTTTGCATGGAAATCGTTTCGTTGCCCTATTTTCCATAAAA
* *
12495 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAAC-GTCTCCATTTATTTCATGAT
66 TTAAAGTTCATCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTATTTCATGAT
12559 TGGGAACCAAAAACACATTCCTTTCTTCA
131 TGGGAACCAAAAACACATTCCTTTCTT-A
* * *
12588 GGATACATGATATTGATGTTTTTCTTTTGCATGGAAATCTTTTGGTTGCCCTATTTTCCATAAAA
1 GGATACATGACATTGATGTTTTTCTTTTGCATGGAAATCGTTTCGTTGCCCTATTTTCCATAAAA
* * * *
12653 TTAAAGTTCATCTCTTAAATAAGGCAAACATTGATTCTCGTAACACTCTCCACTT-TTTCATGAT
66 TTAAAGTTCATCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTATTTCATGAT
*
12717 TGGGAACCAAAAATACATTCCTTTCTTTA
131 TGGGAACCAAAAACACATTCCTTTC-TTA
12746 GGATACATGACATTG
1 GGATACATGACATTG
12761 TCGCTTTGGT
Statistics
Matches: 300, Mismatches: 27, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
157 1 0.00
158 197 0.66
159 102 0.34
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (158 bp):
GGATACATGACATTGATGTTTTTCTTTTGCATGGAAATCGTTTCGTTGCCCTATTTTCCATAAAA
TTAAAGTTCATCACTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTATTTCATGAT
TGGGAACCAAAAACACATTCCTTTCTTA
Found at i:15072 original size:474 final size:475
Alignment explanation
Indices: 13804--16667 Score: 3229
Period size: 475 Copynumber: 6.0 Consensus size: 475
13794 GAATATCTTG
* ** ** * *
13804 AGGAATAGGCACCATAAACTTAGTCTTCCCATAATAATATACGATATTGAAGGTTTGGTTTCGTA
1 AGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTA
* * * *
13869 AGAAAGGCTTTCTTCCC-TCAAATTTTGTCAAAGTCTATA-TTCGTGCCTCAATTTTGACAAACA
66 AGAAAGGCTTTCTTCCCACCAATTTTTG-CAAAGTCTA-AGTTCGTGCCTCAACTGTGACAAACA
* * * * * ** * * * * *
13932 TGGATTTTCGGAATTACCTTCATTCCCTTTATGATTGCTCACTATAAACACATTCACCTTATTAG
129 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAG
* * * * * *
13997 GATAAATGATAGTATTGATTTTCTTTTGCTTGGAAATATTTTCTTTGCCTTATTTTCCTTAATAT
194 GATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
14062 CAAAGTTCATCCCTTAAATACGGCAAGCATTGATTCTCGTAATAGTCTCCATTCCTTTAATGATT
259 TAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATT
* * * * * * *
14127 AGGACCCAAAAACACATTTCATTTAATAGAATAGATGACATTGACACTTTAGTGTAGCTAGAAAA
324 AGGA-CCAAAAACACATTCCTTTTATTAGGATACATGACATTGACGCTTTAGTGTAGCAAGAAAA
* *
14192 GCATTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAG
388 GCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
*
14257 TCATACTAATCCCCATT-TATTTC
453 TCATACTAATCCCAATTCT-TTTC
* * * *
14280 AGGATTAGGCACCATAAACTTAGTCTTCTAGTAAGAATACATGATATTGAAG-TTTAGTTTCGTA
1 AGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTA
* * ** * * * *
14344 AGAAAGGCTTTCTTCCCACCAATATTTGTAAAAACTATGTTCGTGCCTTAACAGCGACAAACATG
66 AGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAACTGTGACAAACATG
* * **
14409 GATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACATGTTCTCCTCATTAGGA
131 GATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGA
* * * * * * *
14474 TAAAGGATATTGAT-ATTTTTCTTTTGCATAGAAATCTTTTCGTTACCTTATTTTCCATAAAATT
196 TAAATGATATTAATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATT
* * * * *
14538 AAAGTTCATCCCTTAAACAAGGTAAGCATTGATTCTTGTAATAGTCTCCATTTTTTTCATGATTG
260 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTA
* * * **
14603 GGCACCAAAAATACATTCCTTTTATTAGGATACATGGCATTGATGCTTTAGTGTTTCAAG-AAAG
325 GG-ACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACGCTTTAGTGTAGCAAGAAAAG
* * * * *
14667 GATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTATCTCTTAAATAAGATAAACATGCATAGT
389 CATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
14732 CATACTAATCCCAATTCTTTTC
454 CATACTAATCCCAATTCTTTTC
* * *
14754 AGGATTAGGCACCATAAACTTAGTCTTCTAATAGGGATACACGATATTGAGGCATTGGTTTCGTA
1 AGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTA
* ** * * *
14819 AGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGCCTAAGTTAATGTCACAACTGTGACAAATATG
66 AGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAACTGTGACAAACATG
** *
14884 GATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACTTATTCTCATCATTAGGA
131 GATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGA
* * * * *
14949 TAAATGATGTTAATGTTTTTCTTTTGCACGGAAATCTTTTCGTTGCCCTATTTTCCATAAAATTA
196 TAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
* * * * * * * *
15014 ATGTTTA-CCTTTAAATAAGGAAAGCATTGATTCTCATAATAGTCTCTATTTTTTTCATGATTGG
261 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAG
* * * * *
15078 GCACCAAAAACACATTCCTTCTATTAGGATACATGACATTAACACTTTGGTGTTGCAAGAAAAGC
326 G-ACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACGCTTTAGTGTAGCAAGAAAAGC
* * *
15143 ATTTCTTTCAATCTTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
390 ATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* * *
15208 ATACTAAT-ACACTTTCTTTTG
455 ATACTAATCCCA-ATTCTTTTC
* * *
15229 AGGAATAGGCACCATAAACTTAGTCTTCCT-ATAAGGATATACGATATTGAAGCTTTGGTTTTGT
1 AGGATTAGGCACCATAAACTTAGTCTT-CTAATAAGGATACACGATATTGAAGCTTTGGTTTCGT
* * * * * * * * *
15293 AATAAAGGATTTCTT--CACTCAA-ATTTGCTAAAGTCTAAATTCGTTCCTTAATTATGATAAAC
65 AAGAAAGGCTTTCTTCCCAC-CAATTTTTGC-AAAGTCTAAGTTCGTGCCTCAACTGTGACAAAC
* ** ** * * *
15355 ATGGATTTTAGTAATTTTCTTCATTCGCTTTATGATTACTCTCTATAAACACATTCTCCTCATTA
128 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTA
* * * * * *
15420 GGGTAAGTGATATTATTGATTTTCTTTTGCTTAGAAATCCTTTT-TTTGCTCTATTTTCCTTAAA
193 GGATAAATGATATTAATGATTTTCTTTTGCATGGAAAT-CTTTTCTTTGCCCTATTTTCCTTAAA
* * ** * * *
15484 ATCAAAGTTTATCCCTTAAATAAGGCAAGTGTTGATTCTCGTAACAGTTTCCATTCCTTTCATGA
257 ATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCATGA
* * * * * * *
15549 TTAGGAACCAAAAACACATTTCATTCAGTATGATACATGACATTGACGCTTTAGTGTCGCCAGAA
322 TTAGG-ACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACGCTTTAGTGTAGCAAGAA
* * * * *
15614 AAGCATTTCTTACAACCTTTTTTGATAGAATCAAAGTTTCTCTCTTAACTAAAACAAACATGAAT
386 AAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
15679 AGTCATACTAATCCCTATTCTTTTC
451 AGTCATACTAATCCCAATTCTTTTC
* * ** * *
15704 AAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACATGATATTGAAGCACTAGTTTTGTA
1 AGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTA
* * ** * * * *
15769 AGAAAGGCCTTT-TTCTCAACAATTTTTTTAAAGCCAAAGTTCATGCCTCAACTGTGACAAACAA
66 AGAAAGG-CTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAACTGTGACAAACAT
* *
15833 GGATTCTAGTAATGATCTTCATTCATTTTGT-AGTTAGGCACTATAAACATATTCTCCTCATTAG
130 GGATTCTAGTAATGATCTTCATTCATTTTGTGA-TTACGCACTATAAACACATTCTCCTCATTAG
* * *
15897 GATAAATGATATTAATGTTTTTCTTTTGCATGGATATCTTTTTTTTGCCCTATTTTCCTTAAAAT
194 GATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
15962 TAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACT-GTCTCCATTTTTTTCATGAA
259 TAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAA-TAGTCTCCATTCTTTTCATGAT
* * * * * * *
16026 T-GGAACAAAAAAGACATTCCTTTCATTAGGATACATGACATTGATGCATTGGTGTCGCAAGAAA
323 TAGG-ACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACGCTTTAGTGTAGCAAGAAA
* *
16090 AGCATTTCTTTCAACCGTTTTTGATAGAATCAATGTTTGCCT-TTAAATAAGACAAACATGAATA
387 AGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* *
16154 GTCATACTAATCCCCATTCTTTTT
452 GTCATACTAATCCCAATTCTTTTC
* * * * * * *
16178 AGAATTAGGCACCATAAAGTTAGTTTTCTCAA-AAGGATACATGATATTTATA-CTTTTGTTTCA
1 AGGATTAGGCACCATAAACTTAGTCTTCT-AATAAGGATACACGATATTGA-AGCTTTGGTTTCG
* * * * *
16241 TAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCTCAATTGAGACAAACA
64 TAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAACTGTGACAAACA
* * * * ** * * * *
16306 TGGATTCTTGTAATGATCTTTATTCATTTTTTAATTTGGTACAAAAAACACATTCTCCTTATTAG
129 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAG
* *
16371 GATAAATGATATTGATGATTTTCTTTTGCATTGAAATCATTTT-TTTGCCCTATTTTCCTTAAAA
194 GATAAATGATATTAATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAA
*
16435 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTATTAGTCTCCATTCTTTTCATGAT
258 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCATGAT
* * * ** * *
16500 TAGGAACAACGAATACATT-CTTTTCATTAGGACGCATGACATTGACGCATT-GATGTCA-TAAG
323 TAGGACCAA-AAACACATTCCTTTT-ATTAGGATACATGACATTGACGCTTTAG-TGT-AGCAAG
* * *
16562 AAAAGCATTTCTTTCAACCATTTTTGATTGAATCAAAGTTTGTCCCTTAAATAAGACAAACATGA
384 AAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * *
16627 ATAATCATACAAATCCCAGTTCTTTTT
449 ATAGTCATACTAATCCCAATTCTTTTC
16654 AGGATTAGGCACCA
1 AGGATTAGGCACCA
16668 AAAAGTTTCT
Statistics
Matches: 2016, Mismatches: 337, Indels: 70
0.83 0.14 0.03
Matches are distributed among these distances:
473 13 0.01
474 688 0.34
475 1011 0.50
476 299 0.15
477 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (475 bp):
AGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTA
AGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAACTGTGACAAACATG
GATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGA
TAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAG
GACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACGCTTTAGTGTAGCAAGAAAAGCA
TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
TACTAATCCCAATTCTTTTC
Found at i:16045 original size:950 final size:946
Alignment explanation
Indices: 12587--16667 Score: 4603
Period size: 950 Copynumber: 4.3 Consensus size: 946
12577 TCCTTTCTTC
* * * *
12587 AGGATACATGATATTGATGTTTTTCTTTTGCATGGAAATCTTTTGGTTGCCCTATTTTCCATAAA
1 AGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCGTTGCCCTATTTTCCATAAA
* * * *
12652 ATTAAAGTTCATCTCTTAAATAAGGCAAACATTGATTCTCGTAACACTCTCCACTTTTTCATGAT
66 ATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTCATGAT
* * * *
12717 TGGGAACCAAAAATACATTCCTTTCTTTAGGATACATGACATTGTCGCTTTGGTGTCGCAAGAAA
131 TGGGAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTTTAGTGTCACAAGAAA
* *
12782 TGCATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATA
196 AGCATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * * *
12847 GTCATACTAATACCCATTCTTTTGAGGAATAGGCACCATAAACTTAGTCTTCCCATAAAGATATA
261 GTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCCAATAAGGATACA
* * * * * *
12912 CGATATTGAAGCTTTGGTTTCATAAGAAAGGCCTTCTTCCCTCAAATTTTATT-AAAGTCTAAGC
325 CGATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTT--CTCAAATTTT-TTCAAAGCCAAAGT
* * * * * * * * * * *
12976 TCGTGCCTCAAATATGGCAAACATTGATTTTAATAATTATCTTCATTCGCTTTATGATTACTCGC
387 TCATGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTC-ATTTATGATTACGCAC
* * * * *
13041 TATAAACACATTCTCTTCATTATGATAAATGATATTATTGATTTTT-TTTTGCTTGGAAATCTAT
451 TATAAACACATTCTCCTCATTAGGATAAATGATATTAATG-TTTTTCTTTTGCATGGAAATCTTT
* * *
13105 TCTTTGCCCTATTTTCCTTAATATCAAAGTTCATCCCTTAAATAAGGCAAACATTGATTCTAATA
515 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATA
* * *
13170 ACAGTCTCCATTCCTTTAATGATTAGGAACC-AAAACACATTTCATTGAATAGGATAGATGACAT
580 ATAGTCTCCATTCCTTTAATGATTAGGAACCAAAAACACATTTCATTTAATAGGATACATGACAT
* * *
13234 TGACGCTTTAGTGTAGCCAGAAAAGCATTTCTTTCACT-TGTTTTTGATAGAATCAAAGTTTGTC
645 TGACACTTTAGTGTAGCAAGAAAAGCATTTCTTTCAATCTGTTTTTGATAGAATCAAAGTTTGTC
* * * *
13298 TCTTAAATAAGACAAACATGAATAATCATACTAAT-CCCTATTCTTTTCAGGATTAGGGACCATG
710 TCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCT-TTCTTTTCAGGAATAGGCACCATA
* *
13362 AACTCAGTCTTCTAAAAAGGGATACACGATATTGAAGTATTGCTTTCGTAAGAAAGGCA-TTCTT
774 AACTTAGTCTTCTAAAAA-GGATACACGATATTGAAGT-TTGGTTTCGTAAGAAAGG-ATTTCTT
* * * * * * *
13426 CCCACCAATTTTTGTGAAGCCTAAATTCGTGCCTCAATTGTGATAAACATAGATTGTAGTAATGA
836 -CCACCAATATTTGTAAAGTCTAAATTCGTGCCTCAATTATGACAAACATGGATTTTAGTAATGA
* * * * *
13491 GCTTTATTCATTTTGTGATTAGGCACTATAAACATATTCTCGTCATT
900 TCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATT
* * *
13538 AGGATAAATGATATTGATG-TTTCACATTTGCATGGAAATCTTTTCGTTGCCCTATTTTCCATAA
1 AGGATAAATGATATTGATGATTT-TCTTTTGCATAGAAATCTTTTCGTTGCCCTATTTTCCATAA
* * *
13602 AATTAAAGTTCATCCCTTAAATAAGGCAAACATTGATTCTCGTAACATTCTCTAATTTTTTCATG
65 AATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTC-CATTTTTTCATG
* * * * * *
13667 ACTGGGCACCAAAAACACAATCCTTTCATTAGGATTCATGACATTGACGCTTTGGTGTCACAAGA
129 ATTGGGAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTTTAGTGTCACAAGA
* * * *
13732 AAAACATTTCTTTCAATCGTTTTTTATTGAATCAAAGTTTGTCTCTTAAATATGACAAAC----A
194 AAAGCATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * ** *
13793 T-G-------AAT---A-TC--TTGAGGAATAGGCACCATAAACTTAGTCTTCCCATAATAATAT
259 TAGTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCCAATAAGGATAC
** * * *
13844 ACGATATTGAAGGTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTCAAAGTCTATA-
324 ACGATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTT--CTCAAATTTTTTCAAAG-CCAAAG
* * * * * * * * * * *
13908 TTCGTGCCTCAATTTTGACAAACATGGATTTTCGGAATTACCTTCATTCCCTTTATGATTGCTCA
386 TTCATGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATT-CATTTATGATTACGCA
* * * * * * *
13973 CTATAAACACATTCACCTTATTAGGATAAATGATAGTATTGATTTTCTTTTGCTTGGAAATATTT
450 CTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGTTTTTCTTTTGCATGGAAATCTTT
* * * *
14038 TCTTTGCCTTATTTTCCTTAATATCAAAGTTCATCCCTTAAATACGGCAAGCATTGATTCTCGTA
515 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATA
* * *
14103 ATAGTCTCCATTCCTTTAATGATTAGGACCCAAAAACACATTTCATTTAATAGAATAGATGACAT
580 ATAGTCTCCATTCCTTTAATGATTAGGAACCAAAAACACATTTCATTTAATAGGATACATGACAT
*
14168 TGACACTTTAGTGTAGCTAGAAAAGCATTTCTTTCAA-CTGTTTTTGATAGAATCAAAGTTTGTC
645 TGACACTTTAGTGTAGCAAGAAAAGCATTTCTTTCAATCTGTTTTTGATAGAATCAAAGTTTGTC
* * *
14232 TCTTAAATAAGATAAACATGAATAGTCATACTAATCCCCATTT-ATTTCAGGATTAGGCACCATA
710 TCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC-TTTCTTTTCAGGAATAGGCACCATA
** * * * *
14296 AACTTAGTCTTCTAGTAAGAATACATGATATTGAAGTTTAGTTTCGTAAGAAAGGCTTTCTTCCC
774 AACTTAGTCTTCTAAAAAGGATACACGATATTGAAGTTTGGTTTCGTAAGAAAGGATTTCTT-CC
** ** * * * *
14361 ACCAATATTTGTAAAAACTATGTTCGTGCCTTAA-CAGCGACAAACATGGATTCTAGTAATGATC
838 ACCAATATTTGTAAAGTCTAAATTCGTGCCTCAATTA-TGACAAACATGGATTTTAGTAATGATC
**
14425 TTCATTCATTTTGTAATTAGGCACTATAAACATGTTCTCCTCATT
902 TTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATT
* * *
14470 AGGATAAAGGATATTGAT-ATTTTTCTTTTGCATAGAAATCTTTTCGTTACCTTATTTTCCATAA
1 AGGATAAATGATATTGATGA-TTTTCTTTTGCATAGAAATCTTTTCGTTGCCCTATTTTCCATAA
* * * *
14534 AATTAAAGTTCATCCCTTAAACAAGGTAAGCATTGATTCTTGTAATAGTCTCCATTTTTTTCATG
65 AATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCA-TTTTTTCATG
* * * * **
14599 ATTGGGCACCAAAAATACATTCCTTTTATTAGGATACATGGCATTGATGCTTTAGTGTTTCAAG-
129 ATTGGGAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTTTAGTGTCACAAGA
* * * *
14663 AAAGGATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTATCTCTTAAATAAGATAAACATGCA
194 AAAGCATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* *
14728 TAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAGGGATA
259 TAGTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCCAATAAGGATA
* * * *
14793 CACGATATTGAGGCATTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGCCTAAG
323 CACGATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCTCA--AATTTTTTCAAAGCCAAAG
* * * * *
14858 TTAATGTCACAACTGTGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCA
386 TTCATGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTATGATTACGCA
** * * *
14923 CTATAAACTTATTCTCATCATTAGGATAAATGATGTTAATGTTTTTCTTTTGCACGGAAATCTTT
450 CTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGTTTTTCTTTTGCATGGAAATCTTT
* * * * * * *
14988 TCGTTGCCCTATTTTCCATAAAATTAATGTTTA-CCTTTAAATAAGGAAAGCATTGATTCTCATA
515 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATA
* ** * * * * *
15052 ATAGTCTCTATTTTTTTCATGATTGGGCACCAAAAACACA-TTCCTTCTATTAGGATACATGACA
580 ATAGTCTCCATTCCTTTAATGATTAGGAACCAAAAACACATTTCATT-TAATAGGATACATGACA
* * * *
15116 TTAACACTTTGGTGTTGCAAGAAAAGCATTTCTTTCAATCT-TTTTTGATTGAATCAAAGTTTGT
644 TTGACACTTTAGTGTAGCAAGAAAAGCATTTCTTTCAATCTGTTTTTGATAGAATCAAAGTTTGT
* * *
15180 CTCTTAAATAAGACAAACATGAATAGTCATACTAATACACTTTCTTTTGAGGAATAGGCACCATA
709 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCTTTCTTTTCAGGAATAGGCACCATA
* * * *
15245 AACTTAGTCTTCCT-ATAAGGATATACGATATTGAAGCTTTGGTTTTGTAATAAAGGATTTCTT-
774 AACTTAGTCTT-CTAAAAAGGATACACGATATTGAAG-TTTGGTTTCGTAAGAAAGGATTTCTTC
* * * **
15308 CACTCAA-ATTTGCTAAAGTCTAAATTCGTTCCTTAATTATGATAAACATGGATTTTAGTAATTT
837 CAC-CAATATTTG-TAAAGTCTAAATTCGTGCCTCAATTATGACAAACATGGATTTTAGTAATGA
** * * ** *
15372 TCTTCATTCGCTTTATGATTACTCTCTATAAACACATTCTCCTCATT
900 TCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATT
* * * * * *
15419 AGGGTAAGTGATATT-ATTGATTTTCTTTTGCTTAGAAATCCTTTT-TTTGCTCTATTTTCCTTA
1 AGGATAAATGATATTGA-TGATTTTCTTTTGCATAGAAAT-CTTTTCGTTGCCCTATTTTCCATA
* * ** * *
15482 AAATCAAAGTTTATCCCTTAAATAAGGCAAGTGTTGATTCTCGTAACAGTTTCCATTCCTTTCAT
64 AAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT-TTTTCAT
* * * * * * * *
15547 GATTAGGAACCAAAAACACATTTCATTCAGTATGATACATGACATTGACGCTTTAGTGTCGCCAG
128 GATTGGGAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTTTAGTGTCACAAG
* * * * * *
15612 AAAAGCATTTCTTACAACCTTTTTTGATAGAATCAAAGTTTCTCTCTTAACTAAAACAAACATGA
193 AAAAGCATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* *
15677 ATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGAT
258 ATAGTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCCAATAAGGAT
* * * * *
15742 ACATGATATTGAAGCACTAGTTTTGTAAGAAAGGCCTTT-TTCTCAACAATTTTTTTAAAGCCAA
322 ACACGATATTGAAGCATTGGTTTCGTAAGAAAGG-CTTTCTTCTC-A-AATTTTTTCAAAGCCAA
* *
15806 AGTTCATGCCTCAACTGTGACAAACAAGGATTCTAGTAATGATCTTCATTCATTT-TGTAGTTAG
384 AGTTCATGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTATG-A-TTAC
* *
15870 GCACTATAAACATATTCTCCTCATTAGGATAAATGATATTAATGTTTTTCTTTTGCATGGATATC
447 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGTTTTTCTTTTGCATGGAAATC
* *
15935 TTTTTTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
512 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
** * * * * * *
16000 ATAACT-GTCTCCATTTTTTTCATGAAT-GGAACAAAAAAGACA-TTCCTTTCATTAGGATACAT
577 ATAA-TAGTCTCCATTCCTTTAATGATTAGGAACCAAAAACACATTTCATTT-AATAGGATACAT
** * * * * *
16062 GACATTGATGCATTGGTGTCGCAAGAAAAGCATTTCTTTCAA-CCGTTTTTGATAGAATCAATGT
640 GACATTGACACTTTAGTGTAGCAAGAAAAGCATTTCTTTCAATCTGTTTTTGATAGAATCAAAGT
* * *
16126 TTGCCT-TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTA-GAATTAGGCA
705 TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCTTTCTTTTCAGGAA-TAGGCA
* * * * * * * * *
16189 CCATAAAGTTAGTTTTCTCAAAAGGATACATGATATTTATACTTTTGTTTCATAAGAAAGGCTTT
769 CCATAAACTTAGTCTTCTAAAAAGGATACACGATATTGA-AGTTTGGTTTCGTAAGAAAGGATTT
* *
16254 TTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCTCAATTGA-GACAAACATGGATTCTT-GT
833 CTT-CCACCAATATTTGTAAAGTCTAAATTCGTGCCTCAATT-ATGACAAACATGGATT-TTAGT
* * * * * * *
16317 AATGATCTTTATTCATTTTTTAATTTGGTACAAAAAACACATTCTCCTTATT
895 AATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATT
* * *
16369 AGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCATTTT-TTTGCCCTATTTTCCTTAA
1 AGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATC-TTTTCGTTGCCCTATTTTCCATAA
**
16433 AATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTATTAGTCTCCATTCTTTTCATG
65 AATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT-TTTTCATG
* * * ** * *
16498 ATTAGGAA-CAACGAATACATTCTTTTCATTAGGACGCATGACATTGACGCATT-GATGTCATAA
129 ATTGGGAACCAA-AAATACATTCCTTTCATTAGGATACATGACATTGACGCTTTAG-TGTCACAA
* *
16561 GAAAAGCATTTCTTTCAACCATTTTTGATTGAATCAAAGTTTGTCCCTTAAATAAGACAAACATG
192 GAAAAGCATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
16626 AATAATCATACAAATCCCAGTTCTTTTTAGGATTAGGCACCA
257 AATAGTCATACTAATCCCA-TTCTTTTCAGGATTAGGCACCA
16668 AAAAGTTTCT
Statistics
Matches: 2670, Mismatches: 388, Indels: 145
0.83 0.12 0.05
Matches are distributed among these distances:
931 54 0.02
932 282 0.11
933 306 0.11
934 159 0.06
935 9 0.00
936 3 0.00
940 3 0.00
943 3 0.00
947 2 0.00
948 33 0.01
949 555 0.21
950 968 0.36
951 171 0.06
952 122 0.05
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (946 bp):
AGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCGTTGCCCTATTTTCCATAAA
ATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTCATGAT
TGGGAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTTTAGTGTCACAAGAAA
AGCATTTCTTTCAACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
GTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCCAATAAGGATACAC
GATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCTCAAATTTTTTCAAAGCCAAAGTTCAT
GCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTATGATTACGCACTATAA
ACACATTCTCCTCATTAGGATAAATGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTG
CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTC
TCCATTCCTTTAATGATTAGGAACCAAAAACACATTTCATTTAATAGGATACATGACATTGACAC
TTTAGTGTAGCAAGAAAAGCATTTCTTTCAATCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAATAGTCATACTAATCCCCTTTCTTTTCAGGAATAGGCACCATAAACTTAG
TCTTCTAAAAAGGATACACGATATTGAAGTTTGGTTTCGTAAGAAAGGATTTCTTCCACCAATAT
TTGTAAAGTCTAAATTCGTGCCTCAATTATGACAAACATGGATTTTAGTAATGATCTTCATTCAT
TTTGTAATTAGGCACTATAAACACATTCTCCTCATT
Found at i:18907 original size:42 final size:42
Alignment explanation
Indices: 18839--18959 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 42
18829 TCACTCTTCC
* * *
18839 ATCT-TCTTCTCTCCTCCTCCTGTCATCCCTCCTCTCTCTATT
1 ATCTCTCTTGTCT-CTCCTCCTATCATCCCTCCTCTCTCTACT
*
18881 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTATCTCTACT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
* * *
18923 ATCTCTCCTGTCTCTCATCCTATCATCCCTCTTCTCT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCT
18960 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
42 63 0.90
43 7 0.10
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.44
Consensus pattern (42 bp):
ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
Found at i:21857 original size:21 final size:21
Alignment explanation
Indices: 21824--21864 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
21814 CTAAGTAAAA
21824 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
21845 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
21865 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:21929 original size:20 final size:19
Alignment explanation
Indices: 21904--21974 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
21894 ACCCTGAAAA
21904 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
21924 GTATCGATACAGATTGCAT
1 GTATCGATACACATTAAAT
**
21943 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
21964 GTATCGATACA
1 GTATCGATACA
21975 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:22027 original size:53 final size:53
Alignment explanation
Indices: 21944--22080 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
21934 AGATTGCATA
*
21944 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGCAGCCAAATTT
*
21998 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGCAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGCAGCCAAATTT
*
22051 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
22081 TTGGAAGTAG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 66 0.82
54 14 0.17
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGCAGCCAAATTT
Found at i:22119 original size:10 final size:10
Alignment explanation
Indices: 22104--22134 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
22094 AATCTCATTT
22104 TCACTATTCA
1 TCACTATTCA
22114 TCACTATTCA
1 TCACTATTCA
22124 TCACTATTCA
1 TCACTATTCA
22134 T
1 T
22135 GTATAGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (10 bp):
TCACTATTCA
Found at i:22156 original size:21 final size:22
Alignment explanation
Indices: 22122--22176 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
22112 CATCACTATT
22122 CATCACTATTCATGTATAGATA
1 CATCACTATTCATGTATAGATA
*
22144 CATCACT-TTCATGTATCGATA
1 CATCACTATTCATGTATAGATA
*
22165 CATCACTGTTCA
1 CATCACTATTCA
22177 CACTGTTCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (22 bp):
CATCACTATTCATGTATAGATA
Found at i:22260 original size:20 final size:20
Alignment explanation
Indices: 22235--22288 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
22225 TGCTATTCAT
22235 GTATCGATACATCATAAATA
1 GTATCGATACATCATAAATA
22255 GTATCGATACATCATAAATA
1 GTATCGATACATCATAAATA
22275 GTATCGATACATCA
1 GTATCGATACATCA
22289 CTGTTCATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.30
Consensus pattern (20 bp):
GTATCGATACATCATAAATA
Found at i:28976 original size:20 final size:20
Alignment explanation
Indices: 28948--29004 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
28938 GTAAAAAGAC
28948 AAAATGTATCGATACATTCA
1 AAAATGTATCGATACATTCA
* * * *
28968 TACATGTATCGATACACTGA
1 AAAATGTATCGATACATTCA
28988 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
29005 CTAGGCAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:31096 original size:476 final size:476
Alignment explanation
Indices: 29575--32303 Score: 3456
Period size: 476 Copynumber: 5.7 Consensus size: 476
29565 GCATACACAA
*
29575 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACATGATA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
* * *
29640 TTGAAGCTTTGGTTTTGGAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTTGTGC
66 TTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCGTGC
* * * **
29705 CTCAGTTGTGACAAACATGGGTTCTA-TAAATGATCTTCATTCATTTTGTGATTAAACACTATAA
131 CTCAATTGTGACAAACATGGATTCTAGT-AATGATCTTCATTCACTTTGTGATTAGGCACTATAA
* * * *
29769 ATACATTCTCCTCGTTAGGATAAATGATATTGATGA-TTTATTTTTGCATTTAAATCTTTTCTTC
195 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTA-TTTTGCATTGAAATCTTTTCTTT
* * * * * *
29833 ACCCTATTTTACTTAAAATC-AAAGTCTGTCCTTTAAATAAGGCAAGCATTGATTCTCATAACAG
259 GCCCTATTTTCCTTAAAATCAAAATTC-ATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAG
* * * *
29897 TCTCTATTCTTTTCCTAATTGGGAACCAAAAACAAATTCCTTTCATTAGGATACCTGACATTGAC
323 TCTCTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAC
* *
29962 GCTTTGGGGTCGCAAGAAAAGCATTTCTTCCAACCATTTTTGAAAGAATCAAAGTTTGTCTCTTA
388 GCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT-
*
30027 AAAAATACAAACAATACAAACATGAATAATCAT
452 --AAAT------AAGACAAACATGAATAATCAT
* * * * * *
30060 CCTAATCTCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCCTCTCATAATGATACACGATA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
* * * *
30125 TTGATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA-CTCTAAGCTCATG
66 TTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGC-CTAAGTTCGTG
* * * * * *
30189 CCTTATTTGTGAAAAACATGGATTCTTGTAATGATCTTCATTGACATTGTGATTAGGCACTATAA
130 CCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAA
* * * * *
30254 ACATATTCTTCTCATTAGGATAAATAATATTGATGATTTT-TTATTGCATTGAAATATTCTCTTT
195 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATT-TTGCATTGAAATCTTTTCTTT
* *
30318 GCCCTATTTTCCTTAAAATC-AAAGTCATCCCTTAAATAAGACAAGCATTGATTCTCATAATAGT
259 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGT
* ** * * * *
30382 CTCTATTCTTTTTATGATTATG-AGCAATAAACACATTCTTTTCATTAGAATACATAACATTGAC
324 CTCTATTCTTTTCATGATTGGGAACCAA-AAACACATTCCTTTCATTAGGATACATGACATTGAC
* * *
30446 GTTTTAGGGTCGCAAGAAAAGCATTTCATTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
388 GCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
30511 AATAAGATAAACATGAATAATCAC
453 AATAAGACAAACATGAATAATCAT
*
30535 ACTAA-CCCCTATT-TCTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACATGA
1 ACTAATCCCC-ATTCT-TTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGA
* * *
30598 TATTGAAGCTTTGGCTTCGTAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGCCCAAGTTCGT
64 TATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCGT
* * *
30663 GCCTCAGTTGTGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
129 GCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATA
* * * **
30728 AACAAATTCTCCTTATTAGGATAAAGGATATTGATGATTTTCCTTTGC-TTGAAAATCTTTTCTT
194 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATTG-AAATCTTTTCTT
* * * ** * *
30792 TGTCCTATTTTCCTTAAAATCAAAATTCATCCGTTAAAAAAAACAAGCATTGACTCTCGTAATAG
258 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAG
** * * * * *
30857 TCTCTATTCTTTTCATGATTGGGAACCAAAAATGCATTCCTTTCTTTAGGATATATAACATTCAA
323 TCTCTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAC
* * * *
30922 GCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATTAGAGTTTATCTCTTA
388 GCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
30987 AATAAGACAAGCACGAACAATCAT
453 AATAAGACAAACATGAATAATCAT
* * * *
31011 ACTAATCCCCATTCTTTTCAAGATTGGGCACCATAAACTTAGTCTTCTACTAAGGACACACGATA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
* * * * *
31076 TTGATGCTTTGGTTTCGTAAGAAAGGTTTTTTTCCCACCAATTTTTGTGAAGCCTAAGCTCGTGC
66 TTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCGTGC
*
31141 CGT-AATTATGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTCGTGATTAGGCACTATA
131 C-TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTT-GTGATTAGGCACTATA
* *
31204 AACACATTCTCCTCATTAGGATAAATGATATTG-TAGATTTTATTTTACATTGAAATTTTTTCTT
194 AACACATTCTCCTCATTAGGATAAATGATATTGAT-GATTTTATTTTGCATTGAAATCTTTTCTT
* * * * * *
31268 TGCCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATTTATTTTCGTAATAG
258 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAG
* ** * * * **
31333 TCTCCATTCTTTTCATGATTGAAAACCAGAAACACATTCCTTTCATTGGGATACGTGACATTTTC
323 TCTCTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAC
* * * *
31398 GCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTAATAGAATCAAAGTTTATCTCTTG
388 GCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
31463 AATAAGATAAACATAAATAGTCAT
453 AATAAGACAAACATGAATAATCAT
*
31487 ACTAATCCCCATTCTTTTCCA-GATTAGGCACCATAAACTTAGCCTTCTAATAAGGATACACGAT
1 ACTAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGAT
* * * *
31551 ATTGAAGCATTGGTTTCGTAAGAAAGACTTTCTTCCTACCAATTTTTGTAAAGTCTAA----GTG
65 ATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCGTG
* * *
31612 CCTCAATTGTGACAAAAATGGATTCTAGTAATGCTCTTCATTCACTTTGCGATTAGGCACTATAA
130 CCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAA
*
31677 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCA-TGAAAATCTTTTATTT
195 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATTG-AAATCTTTTCTTT
* * * * *
31741 GCCCTA-TTTCGCTT-AAAGCAAAGTTCATCCCATAAATAAGGCAAACATTGATTCTCATAACAG
259 GCCCTATTTTC-CTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAG
* *
31804 TCTCCT-TTCTTTTCAAGATTGGGAACCAAAAACACATTCTTTTCATTAGGATACATGACATTGA
323 TCT-CTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGA
* **
31868 CGGTTTAAGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
387 CGCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
31933 AAATAAGACAAACATGAATAATCAT
452 AAATAAGACAAACATGAATAATCAT
* * * * *
31958 ACCAATCCCCATTCTTTTTAGGATTAGGCACCATACACTTAGTCTTTTACTAAGGATACACGATA
1 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
* * * ** * **
32023 TTGAAG-TATTGGTTTTGCAAGAAAGGCATTCTTCCCACCAATTTTTGTAAAATCTATGTTTATG
66 TTGAAGCT-TTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCGTG
* * * * * *
32087 CCTCAATTATGACAAACATAGATTCTAGTAAAGATCTTCATTCACTTTG-GGTCAAGGCAATATA
130 CCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGAT-TAGGCACTATA
* * * * *
32151 AACACATTCTCCTCATTAGGATAAGTGTTGTTGTTGATTTTATTTTGCATGGAAATCTTTTCTTT
194 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATTGAAATCTTTTCTTT
* * **
32216 ACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATT-ATTCTTGTAATAGT
259 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGT
* *
32280 CTCCATTCTTTTCATGATAGGGAA
324 CTCTATTCTTTTCATGATTGGGAA
32304 AGACTTTCTT
Statistics
Matches: 1945, Mismatches: 263, Indels: 82
0.85 0.11 0.04
Matches are distributed among these distances:
470 1 0.00
471 284 0.15
472 124 0.06
473 4 0.00
474 10 0.01
475 407 0.21
476 706 0.36
477 15 0.01
481 4 0.00
483 4 0.00
484 144 0.07
485 238 0.12
486 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
TTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCGTGC
CTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAA
CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATTGAAATCTTTTCTTTGC
CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCT
CTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCT
TTGGGGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATAATCAT
Found at i:32543 original size:258 final size:258
Alignment explanation
Indices: 32051--32561 Score: 729
Period size: 258 Copynumber: 2.0 Consensus size: 258
32041 AAGAAAGGCA
* * *
32051 TTCTTCCCACCAATTTTTGTAAAATCTATGTTTATGCCTCAATTATGACAAACATAGATTCTAGT
1 TTCTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAATTATGACAAACATAGATTCAAGT
* * * *
32116 AAAGATCTTCATTCACTTTGGGTCAAGGCAATATAAACACATTCTCCTCATTAGGATAAGTGTTG
66 AAAGATCTTCATTCACTTTGGATCAAGGCAATATAAACACATTCTCCTCATTAGGATAAATGATA
* *
32181 TTGTTGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATC
131 TTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTATTTCCCTTAAAATCAAAGTTCATC
* * * ** * *
32246 CCTTAAATAAGGCAAGCATTATTCTTGTAATAGTCTCCATTCTTTTCATGATAGGGAAAGACT
196 CCATAAATAAGGCAAACATTATTATCATAACAATCTCCATTCTTTTCATGATAGGGAAAGACT
* * * *
32309 TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACTTGGATTCAAGT
1 TTCTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAATTATGACAAACATAGATTCAAGT
* * * * *
32374 AATGATCTTCATTCACTTTGTGAT-TAGGCACTATAAACACATTTTCCTTATTAGGATAAATGAT
66 AAAGATCTTCATTCACTTTG-GATCAAGGCAATATAAACACATTCTCCTCATTAGGATAAATGAT
* *
32438 ATTGATGATTTTATTTTGCATGGAAATCTTTTTTTTACCTTATTTCCCTT-AAATCAAAGTTCAT
130 ATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTATTTCCCTTAAAATCAAAGTTCAT
* *
32502 CCCATAAATAGGGCAAACATTGATTATCATAACAATCTCCATTCTTTTCATGATTGGGAA
195 CCCATAAATAAGGCAAACATT-ATTATCATAACAATCTCCATTCTTTTCATGATAGGGAA
32562 CCAAAAACAC
Statistics
Matches: 222, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
257 32 0.14
258 188 0.85
259 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (258 bp):
TTCTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAATTATGACAAACATAGATTCAAGT
AAAGATCTTCATTCACTTTGGATCAAGGCAATATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTATTTCCCTTAAAATCAAAGTTCATC
CCATAAATAAGGCAAACATTATTATCATAACAATCTCCATTCTTTTCATGATAGGGAAAGACT
Found at i:33734 original size:475 final size:476
Alignment explanation
Indices: 32301--37442 Score: 6417
Period size: 475 Copynumber: 10.8 Consensus size: 476
32291 TCATGATAGG
* * * *
32301 GAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACTTGG
1 GAAAGGCTTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
* * *
32366 ATTCAAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTTTCCTTATTAGGAT
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * * *
32431 AAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTTTTTACCTTATTTCCCTT-AAATCAA
131 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGCAA
* * * * * *
32495 AGTTCATCCCATAAATAGGGCAAACATTGATTATCATAACAATCTCCATTCTTTTCATGATTGGG
196 AGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
* * *
32560 AACCAAAAACACATTCTTTTCATTAGGATACATGACATTGACAG-TTTGGGGTCACAAGTAAA-G
261 AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAC-GCTTTGGTGTCGCAAG-AAATG
* * *
32623 CATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATCAGACAAACATGAATAAT
324 CATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* *
32688 CATACTAATCCCTATTCTTTTTC-AGATTAGGGACCATAAACTTAGTCTTCTCATAAGGATACAT
389 CATACTAATCCCCATTC-TTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA-
* *
32752 C-ATATCGATGCTTTAGTTTCATAA
452 CGATATTGATGCTTTGGTTTCATAA
* * * * *
32776 GAAAGGCTTTCTTTCCACCAA-TTTCTGTAAAGTCT-AGTTCATGCCTCAATTATGAAAAACATG
1 GAAAGGCTTTCTTCCCACCAATTTTC-GTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTG
* * *
32839 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCTTCACTAAGA
65 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
** * * * * *
32904 TAAATGGCATTGAAGCATTTTCTTTTGCATAGAAATCTTTTCTTTGCCTTATTTTTCTTAAAAAC
130 TAAATGATATTGATG-ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGC
* * * * * *
32969 AAAGTTAATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCCTTTCATGATTA
194 AAAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
* * *
33034 GGAACTAGAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAATG
259 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAATG
* * * *
33099 CATTTCTTTCAACCATTTTCGATAGAATCAAAGTTTTTCTCTTCAATAAGACAAACATGAATAGT
324 CATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* ** * * * * * *
33164 CATACCAATCCATATTTTTTTCAGGATTAGGCACCATAAACTTCGTCTTCTAATAAAGATACACA
389 CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACG
* *
33229 ATATTGATGCTTTGGATTCGTAA
454 ATATTGATGCTTTGGTTTCATAA
* * * * * **
33252 AAAAGGCTTTATTCCCACCAATTTTCATAAAGTCTAAGTCCGTGGCTCAATTGTGACAAACGTAA
1 GAAAGGCTTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
* * * *
33317 ATTCTAGAAATGATCTTCATTCAATTTGTGATTCGGCATTA-AAAGCACATTCTCCTCATTAGGA
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAA-CACATTCTCCTCATTAGGA
** * * * * **
33381 TAAATGATATTGACAATTTTCTCTTGCAGGGAAATCTCTTCTTTGTCCTATTTTCCCGAAAAGCA
130 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGCA
* * ** * *
33446 AAGTTCATCGCTTAAATATGGAAAATATTGATTCTCTTAACAGTCTCTATTCTTTTCATGATTGG
195 AAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGG
33511 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGC-TTGGTGTCGCAAGAAATGC
260 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAATGC
*
33575 ATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATAGTC
325 ATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* * *
33640 ATACTAGTCCCCATTCTTTTCAAGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATACATGA
390 ATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGA
*
33705 TATTGATGCTTTGCG-TTCGTAA
455 TATTGATGCTTTG-GTTTCATAA
** * * *
33727 GAAAGGCTTTCTTCCCAATAATTTTTGTAAAGTCTAAGTTCGTGCCCCAATTGTGACAAACGTAG
1 GAAAGGCTTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
* * * * * *
33792 ATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCGCATTCTCTTCATCAGGAT
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * *
33857 AAAAGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT-CTCGAAAAGTA
131 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-TAAAAGCA
* * ** * * *
33921 AAGCTCATCCCTTAAATTTGGCAAGCATTGATTCTTATAATAGTCTCAATTCCTTTCATGATTGG
195 AAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGG
* *
33986 GAACCAGAAACACATTCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATGC
260 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAATGC
* * *
34050 ATTTTTTTCAACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAATC
325 ATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* * * *
34115 ATACTAATCCCCATTCTTTTCAGGATTAGGCGCCATAAACTTAGTCTTCTTATATGGATACACGA
390 ATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGA
*
34180 TGTTGATGCTTTGGTTTCATAA
455 TATTGATGCTTTGGTTTCATAA
* ** *
34202 AAAAGGCTTTCTTCCCAATAATTTTCGCAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
1 GAAAGGCTTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
* ** * *
34267 ATTCTAGTAATGATCTTCATTCACTTTTTGATTAGGCACTATAAATGCATTCTCCTCTTTATGAT
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* ** * *
34332 AAATGATATTAACAATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTAAAAAGCAA
131 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGCAA
* * *
34397 AGCTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCTATTCCTTTCATGATTGGG
196 AGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
* * *
34462 AACCAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAATGCA
261 AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAATGCA
* * * *
34527 TTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTTTTGAATAAGACAAACATGAATAGTCA
326 TTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* * * * * *
34592 TACTAATCCTCTTTCTTTTCAGGATTAGGCACCATAAACTTCA-TCTTCTTATAAGGATACGCAA
391 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTT-AGTCTTCTCATAAGGATACACGA
34656 TATTGATGCTTTGGTTT-AGTAA
455 TATTGATGCTTTGGTTTCA-TAA
* * * *
34678 GAAAAGCTTTCTTCCTACCAATTTTCGTAAAGTCTAAGTTCGTGTCTCAATTGTGACAAACATGG
1 GAAAGGCTTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
* * * *
34743 ATTCTAGTAATGAACTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTTACTACGAT
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * * *
34808 AAATGATATTGAAGCATTTTCTTTTGCATGGAAAACTTTTCTTTACCTTA-TTTCCTAAAAATCA
131 AAATGATATTGATG-ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGCA
** * * *
34872 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCGCCATTCTTTTCATAATTGG
195 AAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGG
* * * * *
34937 GAACCAAAAACACATTCCTTTCATTAGTACACATAACATTTG-CGCTTTAGG-GTCACAAGAAAA
260 GAACCAAAAACACATTCCTTTCATTAGGATACATGACA-TTGACGCTTT-GGTGTCGCAAGAAAT
* ** * * * *
35000 GCATTTCTTT-AA-TTTTTTTGTTAGAATCAAAGTTTGTCTCCTAAATAGGACAAACATGAATAA
323 GCATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * * * *
35063 TCATACTAATCCCCTTTCTTTTTAAGATTAGGCCCCACAAACTTAGTTTTCTGATAAGGATACAC
388 TCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC
* *
35128 GATATTGATGCTTTGGCTTCAAAA
453 GATATTGATGCTTTGGTTTCATAA
* * * *
35152 GAGAA-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAA-ATCTATGCCTCAATTGTGACAAACAT
1 GA-AAGGCTTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTC-GTGCCTCAATTGTGACAAACGT
* *
35215 GGATTCTAGTAATGATCTTCATTCACTTTGTGACTAGGCACTATAAACACATTCTCCTCTTTAGG
64 GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* *
35280 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTGCCCTAATTTTCTTTAAAAT
129 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAAG
* * * * * * *
35344 TAAAGTTCATCCCTTAAATAAGGTAAGCATTGATTCTCGTAATAGTCTCCACTCTTCTCAAGATT
193 CAAAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATT
* * * * * * *
35409 GGGAACCATAAACACATTCCTTTCGTTAGGATACATGTCATT-ATCACTATAGTGTAGCAAGAAA
258 GGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGA-CGCTTTGGTGTCGCAAGAAA
* * * * * *
35473 AGCA-TTTTTTCAACCGTTCTTGATAGAATCAAAGTTTATCTATTAAGA-AAGACAAACATCAAT
322 TGCATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA-ATAAGACAAACATGAAT
* * * * * *
35536 AATTATATTAATCCCCATTCTTTTCAAGATTAGACTCCATAAACTTAGTCTTCTAATAAGGATAC
386 AGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC
* * *
35601 ATGATATTGAAG-TATTGGTTTCGTAA
451 ACGATATTGATGCT-TTGGTTTCATAA
* ** * *
35627 GAAAGACAGTCTTCCCACCAATTATT-GTAAAG-CATAAGTTCGTGCCTCAATTATGATAAAC-T
1 GAAAGGCTTTCTTCCCACCAATT-TTCGTAAAGTC-TAAGTTCGTGCCTCAATTGTGACAAACGT
* * **
35689 AGGATTCTAGTAATGATCTTCATTCTCTTTGTGATTAGGCTCTATAAACTTATTCTCCTCATTAG
64 -GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
* * * * *
35754 GATAAATGATATCGATGATTTTCTTTTGCTTGGAAATCTTTTTTTTACCCTATTTTCCTTAAAAT
128 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAG
* * * * * * *
35819 CAAA-TTCTATACCTTAAAGAAT-GCAAGCATTGCTTCTCGCAACAGTCTCTATTATTTTCAAGA
193 CAAAGTTC-ATCCCTTAAA-TATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGA
* * * * ** * * *
35882 TTGGGAACCAGAAACACATTTCTTTCATTAGGTTACAAGACATTCTCCCTCTGGTGTCACAAGAA
256 TTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAA
* * * * * * *
35947 AAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTCTCACTCAAATAAAACAAACATGAAT
321 ATGCATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * * * * *
36012 AGTCATACAAATTCCCATTCTTTTTAGGATTATGCACCATAAACATAGTCTTCTCAAAAGGATAC
386 AGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC
*
36077 ACGATATTGACGCTTTGGTTTCATAA
451 ACGATATTGATGCTTTGGTTTCATAA
** * *
36103 GAAAGGCTTTCTTCCCAATAATTTTTGTAAAGT-TGAGGTTCGTGCCTCAATTGTGACAAACGTG
1 GAAAGGCTTTCTTCCCACCAATTTTCGTAAAGTCT-AAGTTCGTGCCTCAATTGTGACAAACGTG
* * * *
36167 GATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAATAAATTCTCCTCATTAGGA
65 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * *
36232 TAAATGATATTGATGATTTTCTTCTGCATGCAAATCTCTTCTTTGCCCTATTTTCCTAAAAAGCA
130 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGCA
* * * *
36297 AAGTTCATCCCTTAAATATGGCAAAG-ATTGATTCTCGTAATAGTATCAATT-TCTTTCTTGATT
195 AAGTTCATCCCTTAAATATGGC-AAGCATTGATTCTCGTAACAGTCTCCATTCT-TTTCATGATT
*
36360 GGGAACCAGAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAT
258 GGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAT
* * * *
36425 GCATTTTTTTCAACCATTTTTTATAGAATCAAAGTTTGCCTCTCAAATAAGAGAAACATGAATAG
323 GCATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * *
36490 TTATACT-ATCTCCATTCTTTTCAGGATTAGGCACCATACACTTAGTCTTCTCATAAGGATACAC
388 TCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC
*
36554 GATATTGATGCTTTGGTTTCGTAA
453 GATATTGATGCTTTGGTTTCATAA
** ** * * *
36578 GAAAGATTTTCTTCCCAATAACTTTT-GTAAAGTCTAAGTTCCTGCCTCAATTGTAACAAACATG
1 GAAAGGCTTTCTTCCCACCAA-TTTTCGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTG
* * * * * *
36642 GATTCTAGTAATTATCTTCCTTCGCTTTGTGATTAGGCACTATAAACACATTTTCTTTATTAGGA
65 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
*
36707 TAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTG-CCTATTTTTCC-TAAAAGC
130 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAAGC
* * * * *
36770 AAAGCTCATCCCTTAAATATGGTAAGCATTGATTCGCGTAACAGTCTACATTCCTTTCATGATTG
194 AAAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
*
36835 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATG
259 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAATG
* * * * *
36900 CATTTTTTTCAATCATTTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAAGAGGAATAGT
324 CATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* *
36965 CATACTAATCCCCATTCTTTTCAAGATTAGGAACCATAAACTTAGTCTTCTCATAAGGATACATG
389 CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACG
37030 ATATTGATGCTTTGGTTTCATAA
454 ATATTGATGCTTTGGTTTCATAA
** * * ** *
37053 GAAAGGCTTTCTTCCCAATAATTTT-GCAAACTCTAAGTTTATGCCTTAATTGTGACAAACGTGG
1 GAAAGGCTTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
* * *
37117 ATTCTAGTAATGATTTTCATTCACTTTGTTATTAGGCACTACAAACACATTCTCCTCATTAGGAT
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * *
37182 AAATGATATTGATGATTTTCTTTTTCATGGAAATATTTTCTTTGCCTTATTTTCCCTAAAAGCAA
131 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGCAA
* * * * ** * *
37247 AGCTCATCCCTTAAATATGGCAAGCATTAATTCTCGTAGCAGTTTCCATTCCCTTCTTGAATGGG
196 AGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
* * * *
37312 AACC-AGAA-ACATTCCTTTCATTAGGATACATGTCATTGATGCTTT-TTGTCGCAAGAAATGCA
261 AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAATGCA
* ** * * * *
37374 TTTTTTTCAACCGTTTTTTTTAGAATCAAAGTTTGCCTCTTAAAAAAGACAAATAGGAATAGTCA
326 TTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
37439 TACT
391 TACT
37443 TGTTAGGATC
Statistics
Matches: 4058, Mismatches: 546, Indels: 129
0.86 0.12 0.03
Matches are distributed among these distances:
472 90 0.02
473 71 0.02
474 824 0.20
475 1629 0.40
476 1310 0.32
477 134 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
GAAAGGCTTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAGCAA
AGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAATGCA
TTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGAT
ATTGATGCTTTGGTTTCATAA
Found at i:36394 original size:951 final size:949
Alignment explanation
Indices: 32301--37442 Score: 6324
Period size: 951 Copynumber: 5.4 Consensus size: 949
32291 TCATGATAGG
* * *
32301 GAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACTTGG
1 GAAAGGCTTTCTTCCCAACAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACGTGG
* * *
32366 ATTCAAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTTTCCTTATTAGGAT
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * * * *
32431 AAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTTTTTACCTTATTTCCCTTAAATCAAA
131 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTAAAAGCAAA
* * * * *
32496 GTTCATCCCATAAATAGGGCAAA-CATTGATTATCATAACAATCTCCATTCTTTTCATGATTGGG
196 GTTCATCCCTTAAATATGGCAAAGCATTGATTCTCGTAACAGTCTCCATTC-TTTCATGATTGGG
* * *
32560 AACCAAAAACACATTCTTTTCATTAGGATACATGACATTGACAG-TTTGGGGTCA-CAAGTAAA-
260 AACCAGAAACACATTCCTTTCATTAGGATACATGACATTGAC-GCTTTGGTGT-AGCAAG-AAAT
* * *
32622 GCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATCAGACAAACATGAATAA
322 GCATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* *
32687 TCATACTAATCCCTATTCTTTTTC-AGATTAGGGACCATAAACTTAGTCTTCTCATAAGGATACA
387 TCATACTAATCCCCATTC-TTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
* * * * * *
32751 TCATATCGATGCTTTAGTTTCATAAGAAAGGCTTTCTTTCCACCAATTTCTGTAAAGTCT-AGTT
451 TGATATTGATGCTTTGGTTTCGTAAGAAAGACTTTCTTCCCACCAATTT-TGTAAAGTCTAAGTT
* * *
32815 CATGCCTCAATTATGAAAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACT
515 CGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACT
* * ** * *
32880 ATAAACACATTCTCTTCACTAAGATAAATGGCATTGAAGCATTTTCTTTTGCATAGAAATCTTTT
580 ATAAACACATTCTCTTCATTAGGATAAATGATATTGATG-ATTTTCTTTTGCATGGAAATCTTTT
* * * * * * *
32945 CTTTGCCTTATTTTTCTTAAAAACAAAGTT-AATCCCTTAAATAAGGCAAGCATTGATTCTCATA
644 CTTTACCCTATTTTCCTTAAAATCAAA-TTCTATCCCTTAAA-AATGCAAGCATTGATTCTCGTA
* * *
33009 ATAGTCTCCATTCCTTTCATGATTAGGAACTAGAAACACATTCCTTTCATTAGGATACATGACAT
707 ACAGTCTCCATTCCTTTCATGATTGGGAACCAGAAACACATTCCTTTCATTAGGATACATGACAT
* * *
33074 TGA-CACTTTGGTGTCGCAAGAAATGCATTTCTTTCAACCATTTTCGATAGAATCAAAGTTTTTC
772 T-ATCGCTTTGGTGTCGCAAGAAATGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTCTC
* **
33138 TCTTC-AATAAGACAAACATGAATAGTCATACCAATCCATATT-TTTTTCAGGATTAGGCACCAT
836 TC-TCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTT-AGGATTAGGCACCAT
* * * * * *
33201 AAACTTCGTCTTCTAATAAAGATACACAATATTGATGCTTTGGATTCGTAA
899 AAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCATAA
* * * ** * * * **
33252 AAAAGGCTTTATTCCCACCAATTTTCATAAAGTCTAAGTCCGTGGCTCAATTGTGACAAACGTAA
1 GAAAGGCTTTCTTCCCAACAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACGTGG
* * * *
33317 ATTCTAGAAATGATCTTCATTCAATTTGTGATTCGGCATTA-AAAGCACATTCTCCTCATTAGGA
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAA-CACATTCTCCTCATTAGGA
** * * * * *
33381 TAAATGATATTGACAATTTTCTCTTGCAGGGAAATCTCTTCTTTGTCCTATTTTCCCGAAAAGCA
130 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTAAAAGCA
* ** * *
33446 AAGTTCATCGCTTAAATATGG-AAAATATTGATTCTCTTAACAGTCTCTATTCTTTTCATGATTG
194 AAGTTCATCCCTTAAATATGGCAAAGCATTGATTCTCGTAACAGTCTCCATTC-TTTCATGATTG
* *
33510 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGC-TTGGTGTCGCAAGAAATG
258 GGAACCAGAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTAGCAAGAAATG
*
33574 CATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATAGT
323 CATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* *
33639 CATACTAGTCCCCATTCTTTTCAAGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATACATG
388 CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATG
* **
33704 ATATTGATGCTTTGCG-TTCGTAAGAAAGGCTTTCTTCCCAATAATTTTTGTAAAGTCTAAGTTC
453 ATATTGATGCTTTG-GTTTCGTAAGAAAGACTTTCTTCCCACCAA-TTTTGTAAAGTCTAAGTTC
* * * * *
33768 GTGCCCCAATTGTGACAAACGTAGATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
516 GTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTA
* * * * *
33833 TAAGCGCATTCTCTTCATCAGGATAAAAGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
581 TAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * ** **
33898 TTGCCCTATTTT-CTCGAAAAGT-AAA-GCTCATCCCTTAAATTTGGCAAGCATTGATTCTTATA
646 TTACCCTATTTTCCT-TAAAA-TCAAATTCT-ATCCCTTAAAAAT-GCAAGCATTGATTCTCGTA
* *
33960 ATAGTCTCAATTCCTTTCATGATTGGGAACCAGAAACACATTCC-TTCATTAGGATACATGACAT
707 ACAGTCTCCATTCCTTTCATGATTGGGAACCAGAAACACATTCCTTTCATTAGGATACATGACAT
* * *
34024 TGAT-GCTTTGGTGTCGCAAGAAATGCATTTTTTTCAACCATTTTTTATAGAATCAAAGTTTGTC
772 T-ATCGCTTTGGTGTCGCAAGAAATGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTCTC
* * * * *
34088 TCTTAAATAAGATAAACATGAATAATCATACTAATCCCCATTCTTTTCAGGATTAGGCGCCATAA
836 TCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAA
* * *
34153 ACTTAGTCTTCTTATATGGATACACGATGTTGATGCTTTGGTTTCATAA
901 ACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCATAA
* * * * *
34202 AAAAGGCTTTCTTCCCAATAATTTTCGCAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACGTGG
1 GAAAGGCTTTCTTCCCAACAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACGTGG
* ** * *
34267 ATTCTAGTAATGATCTTCATTCACTTTTTGATTAGGCACTATAAATGCATTCTCCTCTTTATGAT
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* ** *
34332 AAATGATATTAACAATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTAAAAAGCAA
131 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-AAAAGCAA
* *
34397 AGCTCATCCCTTAAATATGGC-AAGCATTGATTCTCGTAACAGTCTCTATTCCTTTCATGATTGG
195 AGTTCATCCCTTAAATATGGCAAAGCATTGATTCTCGTAACAGTCTCCATT-CTTTCATGATTGG
*
34461 GAACCAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCA-CAAGAAATG
259 GAACCAGAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGT-AGCAAGAAATG
* * * *
34525 CATTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTTTTGAATAAGACAAACATGAATAGT
323 CATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * * **
34590 CATACTAATCCTCTTTCTTTTCAGGATTAGGCACCATAAACTTCA-TCTTCTTATAAGGATACGC
388 CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTT-AGTCTTCTCATAAGGATACAT
* * *
34654 AATATTGATGCTTTGGTTTAGTAAGAAA-AGCTTTCTTCCTACCAATTTTCGTAAAGTCTAAGTT
452 GATATTGATGCTTTGGTTTCGTAAGAAAGA-CTTTCTTCCCACCAATTTT-GTAAAGTCTAAGTT
* *
34718 CGTGTCTCAATTGTGACAAACATGGATTCTAGTAATGAACTTCATTCACTTTGTGATTAGGCACT
515 CGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACT
* * * *
34783 ATAAACACATTCTCCTT-ACTACGATAAATGATATTGAAGCATTTTCTTTTGCATGGAAAACTTT
580 ATAAACACATTCT-CTTCATTAGGATAAATGATATTGATG-ATTTTCTTTTGCATGGAAATCTTT
* * * *
34847 TCTTTACCTTA-TTTCCTAAAAATCAAAGTTC-ATCCCTTAAATAAAGCAAGCATTGATTCTTGT
643 TCTTTACCCTATTTTCCTTAAAATCAAA-TTCTATCCCTTAAA-AATGCAAGCATTGATTCTCGT
* * * * * * *
34910 AACAGTCGCCATTCTTTTCATAATTGGGAACCAAAAACACATTCCTTTCATTAGTACACATAACA
706 AACAGTCTCCATTCCTTTCATGATTGGGAACCAGAAACACATTCCTTTCATTAGGATACATGACA
* * ** * *
34975 TT-TGCGCTTTAGG-GTCACAAGAAAAGCATTTCTTT-AA-TTTTTTTGTTAGAATCAAAGTTTG
771 TTAT-CGCTTT-GGTGTCGCAAGAAATGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTC
* * * * *
35036 TCTC-CTAAATAGGACAAACATGAATAATCATACTAATCCCCTTTCTTTTTAAGATTAGGCCCCA
834 TCTCTC-AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCA
* * * * *
35100 CAAACTTAGTTTTCTGATAAGGATACACGATATTGATGCTTTGGCTTCAAAA
898 TAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCATAA
* * *
35152 GAGAA-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAA-ATCTATGCCTCAATTGTGACAAACAT
1 GA-AAGGCTTTCTTCCCAACAATTTTTGTAAAGTCTAAGTTC-ATGCCTCAATTGTGACAAACGT
* *
35215 GGATTCTAGTAATGATCTTCATTCACTTTGTGACTAGGCACTATAAACACATTCTCCTCTTTAGG
64 GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* *
35280 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTGCCCTAATTTTCTTTAAAAT
129 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTC-CTAAAAG
* * * * * *
35344 TAAAGTTCATCCCTTAAATAAGG-TAAGCATTGATTCTCGTAATAGTCTCCACTCTTCTCAAGAT
192 CAAAGTTCATCCCTTAAATATGGCAAAGCATTGATTCTCGTAACAGTCTCCATTCTT-TCATGAT
* * * * * *
35408 TGGGAACCATAAACACATTCCTTTCGTTAGGATACATGTCATT-ATCACTATAGTGTAGCAAGAA
256 TGGGAACCAGAAACACATTCCTTTCATTAGGATACATGACATTGA-CGCTTTGGTGTAGCAAGAA
* * * * * *
35472 AAGCA-TTTTTTCAACCGTTCTTGATAGAATCAAAGTTTATCTATTAAGA-AAGACAAACATCAA
320 ATGCATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA-ATAAGACAAACATGAA
* * * * * *
35535 TAATTATATTAATCCCCATTCTTTTCAAGATTAGACTCCATAAACTTAGTCTTCTAATAAGGATA
384 TAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* **
35600 CATGATATTGAAG-TATTGGTTTCGTAAGAAAGACAGTCTTCCCACCAATTATTGTAAAG-CATA
449 CATGATATTGATGCT-TTGGTTTCGTAAGAAAGACTTTCTTCCCACCAATT-TTGTAAAGTC-TA
* * *
35663 AGTTCGTGCCTCAATTATGATAAAC-TAGGATTCTAGTAATGATCTTCATTCTCTTTGTGATTAG
511 AGTTCGTGCCTCAATTGTGACAAACAT-GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAG
* ** * * *
35727 GCTCTATAAACTTATTCTCCTCATTAGGATAAATGATATCGATGATTTTCTTTTGCTTGGAAATC
575 GCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * *
35792 TTTTTTTTACCCTATTTTCCTTAAAATCAAATTCTATACCTTAAAGAATGCAAGCATTGCTTCTC
640 TTTTCTTTACCCTATTTTCCTTAAAATCAAATTCTATCCCTTAAA-AATGCAAGCATTGATTCTC
* * ** * * * *
35857 GCAACAGTCTCTATTATTTTCAAGATTGGGAACCAGAAACACATTTCTTTCATTAGGTTACAAGA
704 GTAACAGTCTCCATTCCTTTCATGATTGGGAACCAGAAACACATTCCTTTCATTAGGATACATGA
* * * * * *
35922 CATTCTCCCTCTGGTGTCACAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTC
769 CATTATCGCTTTGGTGTCGCAAGAAATGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTC
* * * * *
35987 TCACTCAAATAAAACAAACATGAATAGTCATACAAATTCCCATTCTTTTTAGGATTATGCACCAT
834 TCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCAT
* * *
36052 AAACATAGTCTTCTCAAAAGGATACACGATATTGACGCTTTGGTTTCATAA
899 AAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCATAA
* * *
36103 GAAAGGCTTTCTTCCCAATAATTTTTGTAAAGT-TGAGGTTCGTGCCTCAATTGTGACAAACGTG
1 GAAAGGCTTTCTTCCCAACAATTTTTGTAAAGTCT-AAGTTCATGCCTCAATTGTGACAAACGTG
* * * *
36167 GATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAATAAATTCTCCTCATTAGGA
65 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * *
36232 TAAATGATATTGATGATTTTCTTCTGCATGCAAATCTCTTCTTTGCCCTATTTTCCTAAAAAGCA
130 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-AAAAGCA
* * * *
36297 AAGTTCATCCCTTAAATATGGCAAAG-ATTGATTCTCGTAATAGTATCAATTTCTTTCTTGATTG
194 AAGTTCATCCCTTAAATATGGCAAAGCATTGATTCTCGTAACAGTCTCCA-TTCTTTCATGATTG
*
36361 GGAACCAGAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAATG
258 GGAACCAGAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTAGCAAGAAATG
* * * *
36426 CATTTTTTTCAACCATTTTTTATAGAATCAAAGTTTGCCTCTCAAATAAGAGAAACATGAATAGT
323 CATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * * *
36491 TATACT-ATCTCCATTCTTTTCAGGATTAGGCACCATACACTTAGTCTTCTCATAAGGATACACG
388 CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATG
* ** *
36555 ATATTGATGCTTTGGTTTCGTAAGAAAGATTTTCTTCCCAATAACTTTTGTAAAGTCTAAGTTCC
453 ATATTGATGCTTTGGTTTCGTAAGAAAGACTTTCTTCCCACCAA-TTTTGTAAAGTCTAAGTTCG
* * * *
36620 TGCCTCAATTGTAACAAACATGGATTCTAGTAATTATCTTCCTTCGCTTTGTGATTAGGCACTAT
517 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTAT
* * *
36685 AAACACATTTTCTTTATTAGGATAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTT
582 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * *
36750 T-GCCTATTTTTCC-TAAAAGCAAA-GCTCATCCCTTAAATATGGTAAGCATTGATTCGCGTAAC
647 TACCCTA-TTTTCCTTAAAATCAAATTCT-ATCCCTTAAAAAT-GCAAGCATTGATTCTCGTAAC
* *
36812 AGTCTACATTCCTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTG
709 AGTCTCCATTCCTTTCATGATTGGGAACCAGAAACACATTCCTTTCATTAGGATACATGACATT-
* *
36877 AT-GCTTTGGTGTCGCAAGAAATGCATTTTTTTCAATCATTTTTGATAGAATCAAAGTTTGC-CT
773 ATCGCTTTGGTGTCGCAAGAAATGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTT-CTCT
* * * * * * *
36940 CTTAAAAAAGACAAAGAGGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGAACCATAAA
837 CTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAA
*
37005 CTTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCATAA
902 CTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCATAA
* * * * *
37053 GAAAGGCTTTCTTCCCAATAA-TTTTGCAAACTCTAAGTTTATGCCTTAATTGTGACAAACGTGG
1 GAAAGGCTTTCTTCCCAACAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACGTGG
* * *
37117 ATTCTAGTAATGATTTTCATTCACTTTGTTATTAGGCACTACAAACACATTCTCCTCATTAGGAT
66 ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * *
37182 AAATGATATTGATGATTTTCTTTTTCATGGAAATATTTTCTTTGCCTTATTTTCCCTAAAAGCAA
131 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTAAAAGCAA
* * * * * * *
37247 AGCTCATCCCTTAAATATGGC-AAGCATTAATTCTCGTAGCAGTTTCCATTCCCTTCTTGAATGG
195 AGTTCATCCCTTAAATATGGCAAAGCATTGATTCTCGTAACAGTCTCCATT-CTTTCATGATTGG
* * * *
37311 GAACCAG-AA-ACATTCCTTTCATTAGGATACATGTCATTGATGCTTT-TTGTCGCAAGAAATGC
259 GAACCAGAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTAGCAAGAAATGC
* ** * * * *
37373 ATTTTTTTCAACCGTTTTTTTTAGAATCAAAGTTTGCCTCTTAAAAAAGACAAATAGGAATAGTC
324 ATTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
37438 ATACT
389 ATACT
37443 TGTTAGGATC
Statistics
Matches: 3617, Mismatches: 488, Indels: 177
0.84 0.11 0.04
Matches are distributed among these distances:
946 77 0.02
947 35 0.01
948 49 0.01
949 591 0.16
950 1112 0.31
951 1392 0.38
952 358 0.10
953 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (949 bp):
GAAAGGCTTTCTTCCCAACAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACGTGG
ATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTAAAAGCAAA
GTTCATCCCTTAAATATGGCAAAGCATTGATTCTCGTAACAGTCTCCATTCTTTCATGATTGGGA
ACCAGAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTAGCAAGAAATGCAT
TTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATA
TTGATGCTTTGGTTTCGTAAGAAAGACTTTCTTCCCACCAATTTTGTAAAGTCTAAGTTCGTGCC
TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
ACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
CTATTTTCCTTAAAATCAAATTCTATCCCTTAAAAATGCAAGCATTGATTCTCGTAACAGTCTCC
ATTCCTTTCATGATTGGGAACCAGAAACACATTCCTTTCATTAGGATACATGACATTATCGCTTT
GGTGTCGCAAGAAATGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTCTCTCTCAAATAA
GACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTT
CTCATAAGGATACACGATATTGATGCTTTGGTTTCATAA
Found at i:37755 original size:20 final size:20
Alignment explanation
Indices: 37732--37804 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
37722 ACAATTCAAA
37732 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
37752 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
37773 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
37793 GTATCGATACAT
1 GTATCGATACAT
37805 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:37776 original size:21 final size:21
Alignment explanation
Indices: 37750--37825 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
37740 ACATGTTGCA
37750 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
37771 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
37791 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
37812 TTGTATCGATACAT
1 ATGTATCGATACAT
37826 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:37783 original size:41 final size:41
Alignment explanation
Indices: 37732--37825 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
37722 ACAATTCAAA
*
37732 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
37773 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
37814 GTATCGATACAT
1 GTATCGATACAT
37826 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:37882 original size:13 final size:13
Alignment explanation
Indices: 37864--37889 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37854 TACAGCAAGT
37864 ATGTATCGATACA
1 ATGTATCGATACA
37877 ATGTATCGATACA
1 ATGTATCGATACA
37890 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:41971 original size:15 final size:15
Alignment explanation
Indices: 41951--41981 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
41941 TAAAAATGTC
*
41951 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
41966 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
41981 C
1 C
41982 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:44075 original size:20 final size:21
Alignment explanation
Indices: 43996--44074 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
43986 AATGTCCAAA
*
43996 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
44016 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
44041 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
44061 TTGTATCGATACAT
1 ATGTATCGATACAT
44075 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:44079 original size:13 final size:13
Alignment explanation
Indices: 44061--44099 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
44051 ACATTTTTCT
44061 TTGTATCGATACA
1 TTGTATCGATACA
44074 TTGTATCGATACA
1 TTGTATCGATACA
*
44087 CTGTATCGATACA
1 TTGTATCGATACA
44100 GGTGATTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:46565 original size:20 final size:20
Alignment explanation
Indices: 46542--46614 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
46532 ACAATTCAAA
46542 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
46562 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
46583 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
46603 GTATCGATACAT
1 GTATCGATACAT
46615 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:46586 original size:21 final size:21
Alignment explanation
Indices: 46560--46635 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
46550 ACATGTTGCA
46560 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
46581 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
46601 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
46622 TTGTATCGATACAT
1 ATGTATCGATACAT
46636 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:46593 original size:41 final size:41
Alignment explanation
Indices: 46542--46635 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
46532 ACAATTCAAA
*
46542 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
46583 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
46624 GTATCGATACAT
1 GTATCGATACAT
46636 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:46692 original size:13 final size:13
Alignment explanation
Indices: 46674--46699 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46664 TACAGCAAGT
46674 ATGTATCGATACA
1 ATGTATCGATACA
46687 ATGTATCGATACA
1 ATGTATCGATACA
46700 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:48724 original size:19 final size:20
Alignment explanation
Indices: 48681--48731 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
48671 TACAAGCTAA
* **
48681 TGTATCAATACATTTTTTGG
1 TGTATCGATACATACTTTGG
48701 TGTATCGATACATACTTT-G
1 TGTATCGATACATACTTTGG
48720 TGTATCGATACA
1 TGTATCGATACA
48732 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATACTTTGG
Found at i:51100 original size:21 final size:20
Alignment explanation
Indices: 51054--51100 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
51044 TTTGAAGGTG
*
51054 ATTTTGATGAAAAACGATGT
1 ATTTTGATGAAAAACGAAGT
*
51074 AATTTGTAGTGAAAAAC-AAGT
1 ATTTTG-A-TGAAAAACGAAGT
51095 ATTTTG
1 ATTTTG
51101 CAAAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.36
Consensus pattern (20 bp):
ATTTTGATGAAAAACGAAGT
Found at i:63119 original size:20 final size:20
Alignment explanation
Indices: 63047--63126 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
63037 AATTTCCAAA
*
63047 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATCTTTCT
* *
63067 GTGTATCGATACATCTGGAAAATTCA
1 ATGTATCGATACATCT------TTCT
63093 ATGTATCGATACATCTTTCT
1 ATGTATCGATACATCTTTCT
*
63113 TTGTATCGATACAT
1 ATGTATCGATACAT
63127 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
20 30 0.62
26 18 0.38
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATCTTTCT
Found at i:63131 original size:13 final size:13
Alignment explanation
Indices: 63113--63151 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
63103 ACATCTTTCT
63113 TTGTATCGATACA
1 TTGTATCGATACA
63126 TTGTATCGATACA
1 TTGTATCGATACA
*
63139 CTGTATCGATACA
1 TTGTATCGATACA
63152 GGGGGTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:65070 original size:13 final size:13
Alignment explanation
Indices: 65052--65077 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65042 TACACAAAGT
65052 ATGTATCGATACA
1 ATGTATCGATACA
65065 ATGTATCGATACA
1 ATGTATCGATACA
65078 CCAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:65075 original size:32 final size:33
Alignment explanation
Indices: 65034--65097 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
65024 TAGCCAAACT
**
65034 TGTATCGATACA-CAAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAAATGTATCGATACAA
65066 TGTATCGATACACCAAAAAATGTATCGATACA
1 TGTATCGATACACCAAAAAATGTATCGATACA
65098 TTAGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (33 bp):
TGTATCGATACACCAAAAAATGTATCGATACAA
Found at i:67298 original size:470 final size:470
Alignment explanation
Indices: 66052--67386 Score: 1611
Period size: 470 Copynumber: 2.8 Consensus size: 470
66042 TTTTAGTTTG
* * * * * * *
66052 TGCCTTAATTGTCACAAACATGGATTCTAGAAATGATCTTTATTCACT-TTGTGATTAGGCACTA
1 TGCCTCAATTGTGACAAACATGGATTCTAGCAATGGTC--TCTTCA-TATTGTGAATAGACACTA
* * * * * * *
66116 TAAACAGATACTCCTCATTAGGATAAACGATATTGATGATTTTCTCTTGCATGGAAATCTTTTCT
63 TAAAAACATTCTCCTCTTTAGGATAAATGATATGGATGATTTT-TCTTGCATGTAAATCTTTTCT
* * * * * * *
66181 TTGGCAT-TTTTCCTTAAAATCAAAATTCAACCTTTAAATAAGGCAAGCATTAATTCTTATAACA
127 TTGCCCTATTTTCCTAAAAATC-AATTTCATCCTTTAAATAAGGCAAGCATTGATTCTCATAACA
* * * * *
66245 GTCTCCATTTTTTTCATGACTGGGAACCAAAAACACATTCTTTTAATTAGGATACATGACATTGA
191 GTCTCCACTCTTTTCA-GATTGGGAACCAAAATCACATTCCTTT-ATTAGGATACATGACATTGA
* * * * *
66310 CACTTTGGGGTCGCAAGAAAAGCATTTCTTTCAAACATTTTTGATAGAATCAAAGTTTATCTCTT
254 CGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
66375 AAATAAGATAAACATGAATAATCATACAAATCCCCATTCTTCTTAGGATAGGGCACCATAAACTT
319 AAATAAGAAAAACATGAATAGTCATACTAATCCCCATTCTTCTTAAGATAGGGCACCATAAACTT
* * *
66440 GGTCTTCTAATAAGGATACATGATATTGAAGCATTGGTTTCGTAAGAAGGGCTTTCTTCCTACCA
384 AGTCTTCTAATAAGGATACACGATATTGAAGCATTGGTTTCATAAGAAGGGCTTTCTTCCTACCA
* **
66505 ATTTTTGTAAAGCCTAAGTTTG
449 ATTTCTGTAAAGCCTAAGTTCA
* * *
66527 TGCCTCAATTGTGATAAACATGGATTCTAGCAATGGTCTTCTTTCATTTTGTGAATAGGCACTAT
1 TGCCTCAATTGTGACAAACATGGATTCTAGCAATGGTC-TC-TTCATATTGTGAATAGACACTAT
* * * * *
66592 AAACACATTCTCCTCTTTAGGATAAATGATATGGATAATTTTCCTTTGCTTGTAAGTCTTTTCTT
64 AAAAACATTCTCCTCTTTAGGATAAATGATATGGATGATTTTTC-TTGCATGTAAATCTTTTCTT
* *
66657 TGCCCTATTTTCCTAAAAATCAATTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATATCAGT
128 TGCCCTATTTTCCTAAAAATCAATTTCATCCTTTAAATAAGGCAAGCATTGATTCTCATAACAGT
* * *
66722 TTCCACTCTTTTCAAGATTGGGAACCAAAAAAT-ACATTCTCTTTGTTAGGATATATGACATTGA
193 CTCCACTCTTTTC-AGATTGGGAACC--AAAATCACATTC-CTTTATTAGGATACATGACATTGA
* * * * *
66786 TGCTTTGGTTTCACAAGAAAAGTATTTCTTTCAACTATTTTTGATAGAATCAAAGCTTGTCTCTT
254 CGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * **
66851 AAATAATAAAAACATAAATAGTCATACTAATCCCCATTCCTT-TTAAGATTTGGCACCATAAACT
319 AAATAAGAAAAACATGAATAGTCATACTAATCCCCATT-CTTCTTAAGATAGGGCACCATAAACT
* *
66915 TAG-CGTTCTAAT-AGCGATACACGATATTGAAGCATTGGTTTCATAAGAAGTGCTCTTTTTCC-
383 TAGTC-TTCTAATAAG-GATACACGATATTGAAGCATTGGTTTCATAAGAAGGGCT-TTCTTCCT
*
66977 ACCAA-TTCTGTAATGCCTAAGTTCA
445 ACCAATTTCTGTAAAGCCTAAGTTCA
* * **
67002 TGCCTCAATTGTGACATACATGGATTCTAGTAATGAG-C-C-TCA-ATTGTG-ATA-ACTTTTTA
1 TGCCTCAATTGTGACAAACATGGATTCTAGCAATG-GTCTCTTCATATTGTGAATAGAC--ACTA
*
67061 TAAAAACATTCTCCTCTTTAGGATAAATGATATGGATGATTTTTCTTCACATGTAAATCTTTTCT
63 TAAAAACATTCTCCTCTTTAGGATAAATGATATGGATGATTTTTCTT-GCATGTAAATCTTTTCT
*
67126 TTGCCCTATTTTCCTAAAAATCAATGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAACA
127 TTGCCCTATTTTCCTAAAAATCAAT-TTCATCCTTTAAATAAGGCAAGCATTGATTCTCATAACA
* *
67191 GTCTCCACTCTTTTCTAGATTGGGAACCAAAATCATATTCCTTTCATTATGATACATGACATTGA
191 GTCTCCACTCTTTTC-AGATTGGGAACCAAAATCACATTCCTTT-ATTAGGATACATGACATTGA
*
67256 CGCATTGGTGTCACAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
254 CGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * *
67321 AAATAAGACAAACATGAAT-GATCATACTAATCCCCATTTTTCTCACGATAGAGCACCATAAACT
319 AAATAAGAAAAACATGAATAG-TCATACTAATCCCCATTCTTCTTAAGATAGGGCACCATAAACT
67385 TA
383 TA
67387 TTAGGATTAG
Statistics
Matches: 741, Mismatches: 98, Indels: 47
0.84 0.11 0.05
Matches are distributed among these distances:
468 1 0.00
469 17 0.02
470 221 0.30
471 65 0.09
473 1 0.00
474 4 0.01
475 220 0.30
476 196 0.26
477 16 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (470 bp):
TGCCTCAATTGTGACAAACATGGATTCTAGCAATGGTCTCTTCATATTGTGAATAGACACTATAA
AAACATTCTCCTCTTTAGGATAAATGATATGGATGATTTTTCTTGCATGTAAATCTTTTCTTTGC
CCTATTTTCCTAAAAATCAATTTCATCCTTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTC
CACTCTTTTCAGATTGGGAACCAAAATCACATTCCTTTATTAGGATACATGACATTGACGCTTTG
GTGTCACAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
AAAAACATGAATAGTCATACTAATCCCCATTCTTCTTAAGATAGGGCACCATAAACTTAGTCTTC
TAATAAGGATACACGATATTGAAGCATTGGTTTCATAAGAAGGGCTTTCTTCCTACCAATTTCTG
TAAAGCCTAAGTTCA
Found at i:68315 original size:476 final size:469
Alignment explanation
Indices: 67407--68742 Score: 1618
Period size: 476 Copynumber: 2.8 Consensus size: 469
67397 GCACCATAAA
*
67407 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTATT-AGGATTAGGCACCATAA
1 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-TT-TTCAGGATTAGGCACCATAA
** *
67471 ACTTAGTCTTCTCCTAA-GGATACATGATATTGATGCTTTGGTTTCATAAGAAAAGCTTTCTTGC
64 ACTTAGTC-T-T-CTAATGGATACACAATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTT-C
* *
67535 CT-CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTTTGACAAACATGGATTCTACTAATGAT
125 CTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGAT
* * * *
67599 CTTCATTTACTTTGTGATTAGGCACTATAAACAGATACTCCTCGTTAGGATAAACGATATTGATG
190 CTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA-GATATTGATG
* * * * *
67664 ATTTTCTCTTGCACGGAAATCTTTTCTTCGCCTTTTTTTCCTTAAAATCAAAATTCAACCTTTAA
254 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-TATTTTCCTTAAAATCAAAATTCATCCTTTAA
* * * *
67729 ATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTTTGTCACTGGGAACCAAAAACACAT
318 ATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTTATGATTGGGAACC-AAAACACAT
* * * * * * *
67794 TCCTTTAATTGGGATACATGACATTGACGCTTTGGGGTCACAAGAAAAGCATTTTTTTCAACCAT
382 TCCTTTAACTAGGATACAAGACATTGACACTATGGGGTAACAAGAAAAACATTTTTTT-AACCAT
* *
67859 TTTTGGTAGAATCAAAGTTTGTCT
446 TTTTGATAGAATCAAAGTTTGCCT
*
67883 CTTAAATAAGACAAACATGAAT-GATCATACTAATCCCCATTTTTCTCATGA-TAGAGCACCATA
1 CTTAAATAAGACAAACATGAATAG-TCATACTAATCCCCATTTTT-TCAGGATTAG-GCACCATA
* * * * * *
67946 AACTTTGTCGTCTAAATTGGATAAACAATATTGAAGCATTGGTTTCATAAGAAGGGCTTTCTTCC
63 AACTTAGTCTTCT-AA-TGGATACACAATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCC
* * * ** *
68011 TACCAATTTTCGTAAAGCCTAAATTTATGCCTCAATTGTGACAAACGTGGATTCTAGTAATGATC
126 TACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATC
* * * *
68076 TTTATTCATTTTATGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGA
191 TTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA-GATATTGATGA
* * *
68141 TTTTCTTTTGCATGTAAATCTTTTTTTTGCACTATTTTCCTTAAAATCAAAGTTCATCCTTTAAA
255 TTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTATTTTCCTTAAAATCAAAATTCATCCTTTAAA
* * * * * *
68206 TAAGGCAAGCACTGATTCTCGTAACAGTCTCCAATCTTTTCATGATTAGGATCCAGAAACACATT
319 TAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTTATGATTGGGAACCA-AAACACATT
* * * * *
68271 CCTTTCACTAGGATATAAGACATTGTCACTATGGTGTAACAAGAAAAACATTTTTTTAACCGTTT
383 CCTTTAACTAGGATACAAGACATTGACACTATGGGGTAACAAGAAAAACATTTTTTTAACCATTT
*
68336 TTGATTGAATCAAAGTTTGCCT
448 TTGATAGAATCAAAGTTTGCCT
* * * * * *
68358 CTTAAATATGACAAACTTGGATAGTCATACGAATCCCCATTCTTTTCAGGATTAGGAAGCATAAA
1 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-TTTTCAGGATTAGGCACCATAAA
*
68423 CTTAGTCTTCTAATAAGGATACACAATATTGATGCTTTGGCTTT-GTAAGAAAGGCTTTCTTCCT
65 CTTAGTCTTCTAAT--GGATACACAATATTGATGCTTTGG-TTTCATAAGAAAGGCTTTCTTCCT
* * * *
68487 ACCAATTTTTTTAATGTCTAAGTTCGTGCCTCAGTTGTGAGAAACATGGATTCTAGTAATGATCT
127 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCT
* * * *
68552 TCATTCACTTTGTGATTAGGGA--ATACAA-ACA-T-TCCTCATTAAGATGAAAAATATTGAAGC
192 TCATTCACTTTGTGATTAGGCACTATA-AACACATTCTCCTCATTAGGAT-AAAGATATTGATG-
* *
68612 ATTTTCTTTTGCATGGAAACCTTTTCTTTGCTCTATATTT-CTTAAAATCAAAATTCGTCCTTTA
254 ATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTAT-TTTCCTTAAAATCAAAATTCATCCTTTA
*
68676 AATAAGGTAA-CTATTGATTCTCGTAATAGTCTCCATTCTTTTTATGATTGGGAACCAAAACCAC
317 AATAAGGCAAGC-ATTGATTCTCGTAATAGTCTCCATTCTTTTTATGATTGGGAACCAAAA-CAC
68740 ATT
380 ATT
68743 TTAGTAATGA
Statistics
Matches: 732, Mismatches: 106, Indels: 48
0.83 0.12 0.05
Matches are distributed among these distances:
471 23 0.03
472 112 0.15
473 12 0.02
474 8 0.01
475 206 0.28
476 370 0.51
477 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (469 bp):
CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTCAGGATTAGGCACCATAAAC
TTAGTCTTCTAATGGATACACAATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCCTACCA
ATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCAT
TCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGATATTGATGATTTTCT
TTTGCATGGAAATCTTTTCTTTGCCTATTTTCCTTAAAATCAAAATTCATCCTTTAAATAAGGCA
AGCATTGATTCTCGTAATAGTCTCCATTCTTTTTATGATTGGGAACCAAAACACATTCCTTTAAC
TAGGATACAAGACATTGACACTATGGGGTAACAAGAAAAACATTTTTTTAACCATTTTTGATAGA
ATCAAAGTTTGCCT
Found at i:68963 original size:249 final size:245
Alignment explanation
Indices: 68521--68973 Score: 599
Period size: 249 Copynumber: 1.8 Consensus size: 245
68511 CGTGCCTCAG
* *
68521 TTGTGAGAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGGAATACAAACATTC
1 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCAATACAAACATTC
* *
68586 CTCATTAAGATGAAAAATATTGAAGCATTTTCTTTTGCATGGAAACCTTTTCTTTGCTCTATATT
66 CTCATTAAGA-GAAAAATATTGAAGAATTTTCTTTTGCATGGAAACCTTTTCTTTGCCCTATATT
* * * * *
68651 TCTTAAAATCAAAATTCGTCCTTTAAATAAGGTAACTATTGATTCTCGTAATAGTCTCCATTCTT
130 CCTAAAAATCAAAATTCATCCTTTAAATAAGGCAACTATTGATTCTCATAATAGTCTCCATTCTT
*
68716 TTTATGATTGGGAACCAAAACCACATTTTAGTAATGATATTCATAAGTCAA
195 TTCATGATTGGGAACCAAAACCACATTTTAGTAATGATATTCATAAGTCAA
* * *
68767 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCCCTTTGTGATTAGGCACTATAAACGTAT
1 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCAATACAAAC--AT
* * * * * *
68832 TCCCCTCATT-AG-GAAAAATGATATGGATAATTTTTTTTTGCATGTAAATCTTTTTTTTGCCCT
64 T--CCTCATTAAGAGAAAAAT-AT-TGAAGAATTTTCTTTTGCATGGAAACCTTTTCTTTGCCCT
** *
68895 AT-TCTCCTAAAAATCAATGTTCATCCTTTACATAAGGCAAGC-ATTGATTCTCATAATAGTCTC
125 ATAT-TCCTAAAAATCAAAATTCATCCTTTAAATAAGGCAA-CTATTGATTCTCATAATAGTCTC
68958 CATTCTTTTCATGATT
188 CATTCTTTTCATGATT
68974 TGGAGCCAGA
Statistics
Matches: 177, Mismatches: 22, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
246 56 0.32
247 7 0.04
248 6 0.03
249 100 0.56
250 8 0.05
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (245 bp):
TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCAATACAAACATTC
CTCATTAAGAGAAAAATATTGAAGAATTTTCTTTTGCATGGAAACCTTTTCTTTGCCCTATATTC
CTAAAAATCAAAATTCATCCTTTAAATAAGGCAACTATTGATTCTCATAATAGTCTCCATTCTTT
TCATGATTGGGAACCAAAACCACATTTTAGTAATGATATTCATAAGTCAA
Found at i:69684 original size:475 final size:475
Alignment explanation
Indices: 68763--73538 Score: 3533
Period size: 475 Copynumber: 9.9 Consensus size: 475
68753 TATTCATAAG
*
68763 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCCCTTTGTGATTAGGCACTATAAAC
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
** * * * *
68828 GTATTCCCCTCATTAGGAAAAATGATATGGATAATTTT-TTTTTGCATGTAAATCTTTTTTTTGC
66 ACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTT-CATGTAAATCTTTTCTTTGC
* * * * *
68892 CCTATTCTCCTAAAAATCAATGTTCATCCTTTACATAAGGCAAGCATTGATTCTCATAATAGTCT
130 CCTATTTTCTTAAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCT
* * * * * *
68957 CCATTCTTTTCATGATTTGGAGCCAGAAATATATTCCCTTCATTAGGATACATGACATTGACACT
195 CCATTCTTTTCATGATTGGGA-ACAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCT
* * * *
69022 TTCGTGTCGCAAGAAAAGCATTTCTTTTAACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAAA
259 TTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
69087 AAGACAAACATGAATAGTTATCCTAATCCCCATTCTTTAT-ATGATTAGGCACCATAAACTTAGT
324 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACTTAGT
* * * * *
69151 CTACTAATAAGTATAAACGATATTGATGCT-TTGG-TTCATAAGAGAA-GCTTTTTTCCCACCAA
388 CTTCTAATAAGGATACACGATATTGAAG-TATTGGTTTCATAAGA-AAGGCTTTCTTCCCACCAA
69213 TTTTTGCAAAGTCTAATTTCGTGCC
451 TTTTTGCAAAGTCTAATTTCGTGCC
* *
69238 TCAATTGTGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
* * * *
69303 ACATTATCTTCATTAAGATAAATGATATAGATGATTTTCTTTTTCATGTAAATCTTTTCTTTGCC
66 ACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTTCATGTAAATCTTTTCTTTGCC
** * * *
69368 CTATTTTCTTAAAAATCAATGTTCATCGTTTAAATAAGGCAAGCATTAATTCTCATAACAGTCTC
131 CTATTTTCTTAAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTC
* * **
69433 CATTCTTTTCATGATTGGGAAAAAAAATGCATTTTTTTCATTAGGATACATGACATTGACGCTTT
196 CATTCTTTTCATGATTGGGAACAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTTT
* * * * ** *
69498 GGGGTCGCAAGAAAAGCATTTCTTTCAGCAGTTTTTGTTAGAATCAAAGTTTCCCTATTAAATAA
261 GGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
69563 CACAAACATGAATAATCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
326 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
* * *
69628 CTAATAAGGATACACAATATTGAAGTATTGGTCTCATGAGAAAGGCTTTCTTCCCACCAATTTTT
391 CTAATAAGGATACACGATATTGAAGTATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * *
69693 GCTAAGCCTAAGTTCATGCC
456 GCAAAGTCTAATTTCGTGCC
* * * * *
69713 TCAATTGTGACAAACGTGGATTCTAGTAATGATCATCATTGATTTTGTTATTAGGCACTATAAAC
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
* * * * * * **
69778 GCATTCTCCTCATTAGAACACATGATATGGATGATTTTCTTTTGCCTAAAAATCTTTTCTTTGCC
66 ACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTTCATGTAAATCTTTTCTTTGCC
* * * * *
69843 TTATTTTCCTT-AAAATCAATGTTCATCCCTTAAATATGGCAAGCATTGGTGCTCGTAATAATCT
131 CTATTTT-CTTAAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCT
* * * * * * * * * * *
69907 CTACTATTTTCATGATTGGGAGCCAGAAACACTTTCCTTTGATTAGGATACAAGACATTGTCACT
195 CCATTCTTTTCATGATTGGGA-ACAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCT
* * * * * **
69972 TTGGTGTCGCAAAAAAAAACATTTATTTCAACCGTTTTTGAAAGAGTCAAAGTTACTCTCTTAAA
259 TTGGTGTCGC-AAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
70037 TAAAACAAACATGAATAGTCATACAAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGT
323 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* * * * * * **
70102 CTTCTAATAAGGATGCACGTTATTGACGTA------TCATAA-ACTTAGTC-TTCTAACAAGGAT
388 CTTCTAATAAGGATACACGATATTGAAGTATTGGTTTCATAAGA--AAGGCTTTCT-TC----CC
* * * * ** * **
70159 ACACAA-TATTG-ATACTTTGGTTTTGT-AA
446 AC-CAATTTTTGCAAAGTCTAATTTCGTGCC
** * ** * * * ** * * **
70187 GAAAGGCTTCCTTCCCACCA---ATTTTTTTAAAG-TCTAAGTCCATGCCTCA-ATTGTGACAAG
1 TCAA---TT-GTGACAAACATGGATTCTAGTAATGATCT---T-CAT---TCACTTTGTGATTAG
* * * * ** *
70247 CATGGATTCTAGTAATA-ATC-TTCAT--TCACTTTGTGAT-TAGGCACTATAAATACATTCTCC
55 ---GCA--CTA-TAA-ACA-CATTC-TCCTCA-TTAG-GATAAATG-A-TATGGAT-GATT-T--
* ** * * *
70307 TCATTAGAATAAATGATATTGATGATTTTCTTTTG-CATGGAAATCTTTTCTTTGCCCTATTCCT
103 TC-TT---TTTCATG-TA--AAT-CTTTTC-TTTGCCCT----A--TTTTC--T----TA-----
* * ** *
70371 TAAAATCAAAGATT-ATCCCTTAAATAAGGCAAGCATTGATTCTCGTAAAAGTCTATATTTTTTC
142 -AAAATCAATG-TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTT-
* * * * * * *
70435 TCATGTTTGGGAGGCAAAAATACATTCTTTTCCTTAGGATACATGACATTAATGCTTTCAG-GTC
204 TCATGATTGGGA-ACAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTTT-GGTGTC
* ** * *
70499 ACAAGAAAAGCATTTCTTTCAATTGTTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAA
267 GCAAGAAAAGCATTTCTTTCAACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * ** *
70564 ACATGAATAATCAGACTAATACCCATTCGTCAT-AGG-TTAGGGCACTATAAACTTAGTCTTCTA
331 ACATGAATAGTCATACTAATCCCCATTC-TTTTCAGGATTA-GGCACCATAAACTTAGTCTTCTA
* * * * *
70627 ATAAGGATACACGATATTAAAGCATTGGTTTCATAAGAAGGGCTTTCTTCCCACCAACTTTTGTA
394 ATAAGGATACACGATATTGAAGTATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGCA
* *
70692 AAGCCTAAGTTT-ATGCC
459 AAGTCTAA-TTTCGTGCC
* * *
70709 TAAATTGTGACAAAC----A--C-----ATGATCTTCATTGATTTTGTGATTAGGCACTATAAAC
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
* * * * * *
70763 ACATTCTTCTCATTAGGATAAATGATATGGATGATTTT-TTTTGCACGAAAACCTTTTTTTTGCC
66 ACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTTCATGTAAATCTTTTCTTTGCC
* * * *
70827 CTATTTTCGGTAAAAA--AATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCA
131 CTATTTTC-TTAAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCT
** *
70890 CCATTCTTTTTGTGATTGGG-----------A-----TTCA--A-G--ACAT--TATT---GCTT
195 CCATTCTTTTCATGATTGGGAACAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTT
* ** * ** * * **
70929 TGGTGCCATAAGAAAAGCATTTATTTCAATTGTTTTTGACAGAATTAAAGTTACTC-CGTTAAAT
260 TGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTC-TTAAAT
* * * *
70993 AAAACAAACATGAATAGTCATACTAATACCTATTCTTTTTAGGATTAGGCACCATAAACTTAGTC
324 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
* * * * * *
71058 TTCTAACAAGGATGCATGATATTGATGCATCATAAACTTAGTCTTATAATAAGGATACACGATAT
389 TTCTAATAAGGATACACGATATTGA---A--GT--A-TT-G-GTT-TCATAA-G----A--A-A-
*** ** * ** * * *
71123 TGATGCTTTGGTCTTGTAAGAAATGTTTTCTTCCCACTAATTTTTTTAAAGTCTAAGTCCGTGCC
434 -G--GC-TT--TCTTCCCACCAA--TTTT-TGCAAAGT-CTA-------A-T-T---T-CGTGCC
*
71188 TCAATTGTGACAAACATGGATTCTAGTAATGATTTTCATTCACTTTGTGATTAGGCACTATAAAC
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
* * *
71253 ACATTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTTTGGT-A-GGAAATCTTTTCTTTG
66 ACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTT--TCATGTAAATCTTTTCTTTG
* * * * * *
71316 CCCTATTTTCCTT-AAAATCAAAGATT-ATCCATTAAATAATGCAAGCATTGATGCTTGTAGTAG
129 CCCTATTTT-CTTAAAAATCAATG-TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAG
* * * * * *
71379 TCTCCACTCTTTCCATGTTTGGGAACCAAAAGA-ACATTCTTTTCATTAGGATACATAATATTGA
192 TCTCCATTCTTTTCATGATTGGGAA-CAAAA-ATACATTCCTTTCATTAGGATACATGACATTGA
* * *
71443 TGCTTTGGCGTCGCATGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
255 CGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * *
71508 AAATAAGACAAACATGAAT-GATCATAATAATTCCCACTCTTCTT-AAGA-TGGGTCACCATAAA
320 AAATAAGACAAACATGAATAG-TCATACTAATCCCCATTCTT-TTCAGGATTAGG-CACCATAAA
* * * * *
71570 CTTAGTTTTCTAATAAGGGTACACGATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCTCA
382 CTTAGTCTTCTAATAAGGATACACGATATTGAAGTATTGGTTTCATAAGAAAGGCTTTCTTCCCA
* * *
71635 CCAATTTTT-TAAAGCCTCAGTTT-GTGCC
447 CCAATTTTTGCAAAGTCT-AATTTCGTGCC
* * * *
71663 TCAATTGTGATAAACATGGATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACCATAAAC
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
* * * * *
71728 ACAATCTCCTGATTAGGATAAATGATATGGACGATTTTCCTTTGT-ATGTAAAT-TTTT-TTTTC
66 ACATTCTCCTCATTAGGATAAATGATATGGATGATTTT-CTTTTTCATGTAAATCTTTTCTTTGC
* * * *
71790 CCCATTTTCCTAAAAATCAATGTTCATCCGTTAAATAAGGCAAGCATTGATTCTCATAATAGTCT
130 CCTATTTTCTTAAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCT
*** * * * * *
71855 CCATTCTTTT-AGTGATTAAAAACTGAAAACACATTCCTTTCATTAGGATACAAGACATTAATGC
195 CCATTCTTTTCA-TGATTGGGAAC-AAAAATACATTCCTTTCATTAGGATACATGACATTGACGC
* ** * * * * * *
71919 ATTATTGTCACTAA-AAAACCATTTCTTTCAACCGTTCTTGATAAAATGAAAATTTGTCTCTTAA
258 TTTGGTGTCGC-AAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * **
71983 AGAAGACAAACATGAATAGTCATAATAATCCCCATTCTTTTCAAAATTAGGCACCATAAACTTAG
322 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAG
* * * * * * * *
72048 TCTTCTTATAAGGATACACGATACTGATGCT-TTGGTTTCGTAAGAAAGCCTTTTTTGCCATCAA
387 TCTTCTAATAAGGATACACGATATTGAAG-TATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAA
* *
72112 TTTTTGTAAAGTCTAAGTTCGTGCC
451 TTTTTGCAAAGTCTAATTTCGTGCC
* * * * * *
72137 ACAATTATGACGAATATAGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTACAAAC
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
* ** * ** * *
72202 ACATACTCCTCATTAGGATAAATGATATTCATGATTTACACTTGCATGAAAATCTTTTCTTTGCC
66 ACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTTCATGTAAATCTTTTCTTTGCC
** * *
72267 CTATTTTTCTT-AAAATCAAACTTTATCCCTTAAAAAAGGCAAGCATTGATTCTCGTAATAGAT-
131 CTA-TTTTCTTAAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAG-TC
* * * *
72330 TCCATTATTTTCATGACTGGGAACCAAAAACACATTCTTTTCATTAGGATACATGACATTGACGC
194 TCCATTCTTTTCATGATTGGGAA-CAAAAATACATTCCTTTCATTAGGATACATGACATTGACGC
* *
72395 TTTAGAGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
258 TTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * ** * *
72460 TTAGACAAACATGAATAATCATACTATTCCACATTCTTTTTTGGATTAGGCACGATAAACATAGT
323 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* * * * * * * **
72525 CTTCTATTATGGATACACGATATCGATGCT-TTGGTTTTATAACAAAAGGCTTTTTTATCACCAA
388 CTTCTAATAAGGATACACGATATTGAAG-TATTGGTTTCATAA-GAAAGGCTTTCTTCCCACCAA
* * *
72589 -TTTT--AAAGTC-CATGATCATG-C
451 TTTTTGCAAAGTCTAAT-TTCGTGCC
* ** * * * ** *
72610 TCAACTACGACAAACAAGGATTCTAATAACGATCTTCATTCACTTTGTGATTATACACTATAAGC
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
* * *
72675 ACATTCTCCTCATTCGGATAAATGATATGGGA-GATCTTTTTTTTTTTTTGCATGTAAATCATTT
66 ACATTCTCCTCATTAGGATAAATGATAT-GGATGA-----TTTTCTTTTT-CATGTAAATCTTTT
* * * *
72739 CTTTGCCCTATTTTCCTAAAAATCAATGTTCATCCTTTAAATAAGGCATGCATTGATTCTCATAA
124 CTTTGCCCTATTTTCTTAAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAA
* * * * ** * *
72804 CAGTCTCCACTCTTTTCAAGATAGGGAACCAAAAATACATTCCTTTCAGAAGGATAAAAGACATT
189 TAGTCTCCATTCTTTTCATGATTGGGAA-CAAAAATACATTCCTTTCATTAGGATACATGACATT
* * * * * * * *
72869 GATGCTTTGGTGTCGTAAGAAAAGCATTTCTTTCAATCATTTTTTATAGAATTAAAATTTTTCTC
253 GACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTC
* *
72934 TTAAATAAGACAAACATGAATAGTCATACTAATCCCGATTCTTTTCAGGATTAGGCACCACAAAC
318 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * *** *
72999 TTAGTCTTCTCATAAGGATACATGATGTTGATGCT-TTGGTTTCATAAGAAAATATTTCTTCTCA
383 TTAGTCTTCTAATAAGGATACACGATATTGAAG-TATTGGTTTCATAAGAAAGGCTTTCTTCCCA
* ** *
73063 CTAATTTTTTTAAAGTCTAAGTTCGTGCC
447 CCAATTTTTGCAAAGTCTAATTTCGTGCC
* * * *
73092 TCAATTGTGAAAAACACGGATTCTAGTAATGATCTTCTTTCACTTTGTGATTAAGCA-TGATAAA
1 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACT-ATAAA
*** * * *
73156 CACATTCTCCTCATTAGGATAAATGATATTCCTGCTTTT-TTTCTT--TGGAAATCTTTTCTTTT
65 CACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTT-TTCATGTAAATCTTTTCTTTG
* * * *
73218 CCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAGA-AAGGCAAACATTGATTCTCCTAATTG
129 CCCTATTTT-CTTAAAAATCAATGTTCATCCCTTAA-ATAAGGCAAGCATTGATTCTCGTAATAG
* * ** * *
73281 TCTCCATTTTTTTCATGATTGCGAACCAAAACCACATTCCTTTCATTAGGATATACGACATTGAC
192 TCTCCATTCTTTTCATGATTGGGAA-CAAAAATACATTCCTTTCATTAGGATACATGACATTGAC
* * *
73346 GCTTTGGTGTCACAAGAAAAGCATTTCTTTCATCCGTTTTTGGTAGAATCAAAGTTTGTCTCTTA
256 GCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * * * * *
73411 AATAAGACAAACATGAACAGTCTTACTAATCCCCTTTTTTTTTAAGATTA-ACACCATAAACATA
321 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTA
* * * **
73475 CTCTTCTGATAAGGATACACGATATTGACACT-TTGGTTTTGTAAGAAA-GCTTTTCTTCCCACC
386 GTCTTCTAATAAGGATACACGATATTGA-AGTATTGGTTTCATAAGAAAGGC-TTTCTTCCCACC
73538 A
449 A
73539 TAAACACATT
Statistics
Matches: 3376, Mismatches: 684, Indels: 484
0.74 0.15 0.11
Matches are distributed among these distances:
435 3 0.00
436 97 0.03
437 33 0.01
439 1 0.00
440 3 0.00
442 4 0.00
443 1 0.00
444 3 0.00
445 2 0.00
446 2 0.00
447 8 0.00
448 1 0.00
452 2 0.00
454 1 0.00
457 1 0.00
459 2 0.00
460 2 0.00
462 7 0.00
464 13 0.00
465 48 0.01
466 1 0.00
467 4 0.00
470 1 0.00
471 9 0.00
472 13 0.00
473 414 0.12
474 521 0.15
475 540 0.16
476 308 0.09
477 169 0.05
478 38 0.01
479 285 0.08
480 9 0.00
481 14 0.00
482 82 0.02
483 7 0.00
484 6 0.00
485 8 0.00
486 11 0.00
487 6 0.00
488 9 0.00
489 4 0.00
490 75 0.02
491 33 0.01
492 54 0.02
493 13 0.00
495 3 0.00
496 7 0.00
497 6 0.00
498 8 0.00
499 14 0.00
500 14 0.00
501 5 0.00
502 2 0.00
503 1 0.00
504 4 0.00
505 9 0.00
506 4 0.00
507 5 0.00
508 5 0.00
509 6 0.00
510 3 0.00
511 7 0.00
512 2 0.00
514 4 0.00
516 5 0.00
517 1 0.00
518 79 0.02
519 278 0.08
520 12 0.00
521 4 0.00
522 6 0.00
524 3 0.00
525 10 0.00
526 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAAC
ACATTCTCCTCATTAGGATAAATGATATGGATGATTTTCTTTTTCATGTAAATCTTTTCTTTGCC
CTATTTTCTTAAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTC
CATTCTTTTCATGATTGGGAACAAAAATACATTCCTTTCATTAGGATACATGACATTGACGCTTT
GGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
GACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
CTAATAAGGATACACGATATTGAAGTATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTT
GCAAAGTCTAATTTCGTGCC
Found at i:71093 original size:43 final size:43
Alignment explanation
Indices: 71045--71128 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
71035 GATTAGGCAC
* * *
71045 CATAAACTTAGTCTTCTAACAAGGATGCATGATATTGATGCAT
1 CATAAACTTAGTCTTATAACAAGGATACACGATATTGATGCAT
*
71088 CATAAACTTAGTCTTATAATAAGGATACACGATATTGATGC
1 CATAAACTTAGTCTTATAACAAGGATACACGATATTGATGC
71129 TTTGGTCTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (43 bp):
CATAAACTTAGTCTTATAACAAGGATACACGATATTGATGCAT
Found at i:75786 original size:268 final size:266
Alignment explanation
Indices: 75280--75812 Score: 813
Period size: 268 Copynumber: 2.0 Consensus size: 266
75270 TTGGGATTAG
* *
75280 GCACCATAAACATAGTCTTCAAATAAGGATACATGATATTGATGCTTTGGTTTTGTAAGAAAGGC
1 GCACCATAAACATAGTCTTCAAATAAGGATACATGATATTCATGCTTTGGTTCTGTAAGAAAGGC
*
75345 TTTCTTCCCACCAATTTTTTAAAGTCTAAGTTCGTGCTCAACTGTGACAAAGAAGGATTCTAGTA
66 TTTCTTCCCACCAATTTTTTAAAGTCTAAGTTCGTGCTCAACTGTGACAAACAAGGATTCTAGTA
* * *
75410 ATGATCTTCATTCACTTTGTGATTAGGCAATATAAACGCATTCTCCTCATTACGATAAATGATAT
131 ATGATCTTCATTCACTTTGTGAGTAGGCAATATAAACACATTCTCCTCATTAAGATAAATGATAT
* * *
75475 GGATGATTTTCTTTTGCACGAAAATCTATTCTTTGCTTTATTTTCCTTAAAATCAATGTTCATCC
196 GGAAGATTTTCTTTTGCACGAAAATCTATTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCC
75540 CTTAAT
261 CTTAAT
* * *
75546 GCACCATAAACTTAGTCTTCGAATAAGGATATATGATATTCATGCTTTGGTTCTGTAAGAAAGGC
1 GCACCATAAACATAGTCTTCAAATAAGGATACATGATATTCATGCTTTGGTTCTGTAAGAAAGGC
* * * * *
75611 TTTTTTCGCACCAATTTTTTTAAAGTCTATG-TCTGTGCCTCAATTGTGACAAACATGGATTCTA
66 TTTCTTCCCACCAA-TTTTTTAAAGTCTAAGTTC-GTG-CTCAACTGTGACAAACAAGGATTCTA
75675 GTAAAT-ATCTTCATTCACTTTGTGAGTAGGCAATAT-AACACATTCTCCTCATTAAGATAAATG
128 GT-AATGATCTTCATTCACTTTGTGAGTAGGCAATATAAACACATTCTCCTCATTAAGATAAATG
* *
75738 ATATTGAAGCATTTTCTTTTGCATCG-AAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGT
192 ATATGGAAG-ATTTTCTTTTGCA-CGAAAATCTATTCTTTGCCTTATTTTCCTTAAAATCAAAGT
75802 TCATCCCTTAA
255 TCATCCCTTAA
75813 ATAAGGCAAC
Statistics
Matches: 242, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
266 74 0.31
267 50 0.21
268 113 0.47
269 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (266 bp):
GCACCATAAACATAGTCTTCAAATAAGGATACATGATATTCATGCTTTGGTTCTGTAAGAAAGGC
TTTCTTCCCACCAATTTTTTAAAGTCTAAGTTCGTGCTCAACTGTGACAAACAAGGATTCTAGTA
ATGATCTTCATTCACTTTGTGAGTAGGCAATATAAACACATTCTCCTCATTAAGATAAATGATAT
GGAAGATTTTCTTTTGCACGAAAATCTATTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCC
CTTAAT
Found at i:76448 original size:476 final size:477
Alignment explanation
Indices: 75546--77486 Score: 1813
Period size: 476 Copynumber: 4.0 Consensus size: 477
75536 ATCCCTTAAT
* * * * * * * * *
75546 GCACCATAAACTTAGTCTTCGAATAAGGATATATGATATTCATGCTTTGGTTCTGTAAGAAAGGC
1 GCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGGTTTTATGAGAAAGGC
* * * * *
75611 TTTTTTCGCACCAATTTTTTTAAAGTCTATG-TCTGTGCCTCAATTGTGACAAACATGGATTCTA
66 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAATTGTGACAAACATAGATTCTA
* *
75675 GTAAAT-ATCTTCATTCACTTTGTGAGTAGGCAATAT-AACACATTCTCCTCATTAAGATAAATG
130 GT-AATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATG
* *
75738 ATATTGAAGCATTTTCTTTTGCATC-GAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGT
194 ATATTGAAGCATTTTCTTTTGC-TCGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGT
*
75802 TCATCCCTTAAATAAGGCAACCATTGATTCTCATAATAGTCTCCATTCTTTTCATGTTTGGGAAC
258 TCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCATGTTTGGGAAC
* * * ** * *
75867 CAAAAACACATTCCTTTCATTAGGATAGATGACAT-TCACATAATGGGGTCGCAAGCAAAG-GAT
323 CAAAAACACATTCCTTTCATTAGGATACAAGACTTGTTGC-TATTGGGGTCGCAAGAAAAGCG-T
* * * *
75930 TTCTTTTAACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACCTAAATAGTCCT
386 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCAT
* *
75995 AGTAATCCCCATTCTTTTCAGGATTAG
451 ACTAATCCCCATTATTTTCAGGATTAG
*
76022 GCACCATAAACTTAGTCTTCTAATAAGGATGCACGATATTGAAGCATTGGTTTTATGAGAAAGGC
1 GCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGGTTTTATGAGAAAGGC
* * * **
76087 CTTCTTCCCACCAATTTTTGTAAAG-CTCAAGTTCGTTCCTCAATTGTGGCAAATGTAGATTCTA
66 TTTCTTCCCACCAATTTTTGTAAAGTCT-AAGTTCGTGCCTCAATTGTGACAAACATAGATTCTA
* * * * * * *
76151 GTGACGATCTTCATTGATTTTGTGATTAGGTAGTATAAACACATTCTCCTCATTAGGATAAATGA
130 GTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGA
* ** *
76216 TA-TGCATTATTTTCTTTTGCTCGGAAATCTATTCTTTGCCCTATTTTCCTTAAAATCAATGTTC
195 TATTGAAGCATTTTCTTTTGCTCGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTC
* * *
76280 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCATTCTTTTCATGATTGGGAACCA
260 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCATGTTTGGGAACCA
* * * *
76345 GAAATACATTCCTTTCATTAGGATACAAGACGTTGTTGCT-TTGGTGTCGCAAGAAAAGCGTTTA
325 AAAACACATTCCTTTCATTAGGATACAAGAC-TTGTTGCTATTGGGGTCGCAAGAAAAGCGTTTC
* * ** *
76409 TTTCAACCATTTTTTATAGAAACAAAGTTACTCTCTTAAATAAAACAAACATAAATAGTCATACT
389 TTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACT
* *
76474 AATCCCTATTATTTTCAGGATTTG
454 AATCCCCATTATTTTCAGGATTAG
* * *
76498 GCACCATAAACTTAGTCTTCTAATAAGGATGCACGATATTGACGCTCCATGAAATTAGTCTTCCA
1 GCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGA------A-G-CATT-G-GTT---
* * * * *
76563 TTAAGGATACACGATATTTATGCTTTGGTTTTGTAAGAAAGGTATTCTGCCCGCCAATTTTTTTA
53 TT----AT-GA-GA-A---AGGC--T--TTCT-T---------------CCCACCAATTTTTGTA
* * * * *
76628 AAGTCTATGTCCGTGCCTCAATTATGACAAACATTGATTCTAGTAATGAACTTCATTCACTTTGT
88 AAGTCTAAGTTCGTGCCTCAATTGTGACAAACATAGATTCTAGTAATGATCTTCATTCACTTTGT
* *
76693 GATTAGGCACTATAAACACATTCTCCTCACTAAGATAAATGATATTGAAGCATTTTATTTTG-TA
153 GATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGAAGCATTTTCTTTTGCT-
* * * * *
76757 TGTAAATCTTTTCTTTGCCGTATTTTCCTTAAGATCAGA-GATT-ATCCCTTCAATAAGGCAAGC
217 CGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA-ATG-TTCATCCCTTAAATAAGGCAAGC
* ** * * * * *
76820 ATTAATTCTTGTAATAGTCTCTAATCATTCCATGTTTGGGAACCAAAAACACATTCTTTTCATTA
280 ATTGATTCTCATAATAGTCTCCATTCTTTTCATGTTTGGGAACCAAAAACACATTCCTTTCATTA
* * * *
76885 GGATACTTA-ACATTGATG-TATTGGGGTCGCAAGAAAAGCATTTCTTTCAACCACTTTTGATAG
345 GGATAC-AAGAC-TTGTTGCTATTGGGGTCGCAAGAAAAGCGTTTCTTTCAACCATTTTTGATAG
* * *
76948 AATCAAAGTTTGTCTCTTAAATAAGATAAACATGAAA-AATCATACTAATCCCCATTTTTTTCAG
408 AATCAAAGTTTGTCTCTTAAATAAGACAAACAT-AAATAGTCATACTAATCCCCATTATTTTCAG
77012 GATTAG
472 GATTAG
* ** *
77018 GCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGAAGCATTGGTTTCGTGAGAAGGGC
1 GCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGGTTTTATGAGAAAGGC
* * * * *
77083 TTTCTTCCCGCCAATTTTTGTAAAGCCTAAGTTTGTACCTCAATTGTGACAAACATACATTCTAG
66 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATAGATTCTAG
* * *
77148 TAATGATCTTCATTCATTTTGTGAATAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
131 TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGAT
* * * * *
77213 ATGGATG-ATTTTC--CTGCACATGTAAATCTTTTCTTTGCCCTATTTTCC-TAACAATCAATGT
196 ATTGAAGCATTTTCTTTTGCTC--GGAAATCTTTTCTTTGCCCTATTTTCCTTAA-AATCAATGT
* * * * * * *
77274 TCATCCTTTAAATAAGGCAAGCATTTATTCTAAT-A-AG----GA----TAT-ATGAATTGGGAT
258 TCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCATG-TTTGGGAA
* * * * ** * * *
77328 CCAAAAAACACATTCATTTCATTAGGATATATGAATTGACGCT-TTGGGCTTGCAAGAAAAGCAT
322 CC-AAAAACACATTCCTTTCATTAGGATACAAGACTTGTTGCTATTGGGGTCGCAAGAAAAGCGT
* * * * * * * *
77392 TTCTTTTAATCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAAATAAACATGAACAGTCAT
386 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCAT
* * * *
77457 ACAAATCTCCATTCCTTTT-AGGATTTG
451 ACTAATCCCCATT-ATTTTCAGGATTAG
77484 GCA
1 GCA
77487 GGGCTTTCTT
Statistics
Matches: 1205, Mismatches: 189, Indels: 152
0.78 0.12 0.10
Matches are distributed among these distances:
465 5 0.00
466 108 0.09
467 31 0.03
470 1 0.00
474 4 0.00
475 12 0.01
476 470 0.39
477 149 0.12
478 2 0.00
482 1 0.00
483 1 0.00
484 3 0.00
485 1 0.00
486 2 0.00
489 2 0.00
492 1 0.00
493 5 0.00
494 1 0.00
495 3 0.00
496 1 0.00
497 2 0.00
499 3 0.00
500 1 0.00
501 2 0.00
502 1 0.00
503 4 0.00
504 1 0.00
507 1 0.00
510 2 0.00
511 1 0.00
512 3 0.00
513 1 0.00
514 1 0.00
519 105 0.09
520 267 0.22
521 7 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (477 bp):
GCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGGTTTTATGAGAAAGGC
TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATAGATTCTAG
TAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGAT
ATTGAAGCATTTTCTTTTGCTCGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCA
TCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCATGTTTGGGAACCAA
AAACACATTCCTTTCATTAGGATACAAGACTTGTTGCTATTGGGGTCGCAAGAAAAGCGTTTCTT
TCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAA
TCCCCATTATTTTCAGGATTAG
Found at i:77013 original size:520 final size:519
Alignment explanation
Indices: 76025--77059 Score: 1285
Period size: 520 Copynumber: 2.0 Consensus size: 519
76015 GGATTAGGCA
* * * *
76025 CCATAAACTTAGTCTTCTAATAAGGATGCACGATATTGAAGCATTGGTTTTATGAGAAAGGCCTT
1 CCATAAACTTAGTCTTCCAATAAGGATACACGATATTGAAGCATTGGTTTTATAAGAAAGGCATT
* * * * * ** *
76090 CTTCCCACCAATTTTTGTAAAGCTCAAGTTCGTTCCTCAATTGTGGCAAATGTAGATTCTAGTGA
66 CTGCCCACCAATTTTTGTAAAGCTCAAGTCCGTGCCTCAATTATGACAAACATAGATTCTAGTAA
* * * * * * *
76155 CGATCTTCATTGATTTTGTGATTAGGTAGTATAAACACATTCTCCTCATTAGGATAAATGATATG
131 CGAACTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCACTAAGATAAATGATATG
* ** *
76220 CATTATTTTCTTTTGCTCGGAAATCTATTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCC
196 AAGCATTTTATTTTGCTCGGAAATCTATTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCC
* * * * * *
76285 TTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCATTCTTTTCATGATTGGGAACCAGAAAT
261 TTAAATAAGGCAAGCATTAATTCTCATAACAATCTCCAATCATTCCATGATTGGGAACCAAAAAC
* * * *
76350 ACATTCCTTTCATTAGGATACAAGACGTTGTTGCTTTGGTGTCGCAAGAAAAGCGTTTATTTCAA
326 ACATTCCTTTCATTAGGATACAAGACATTGATGCTTTGGGGTCGCAAGAAAAGCATTTATTTCAA
* * *
76415 CCATTTTTTATAGAAACAAAGTTACTCTCTTAAATAAAACAAACATAAATAGTCATACTAATCCC
391 CCACTTTTGATAGAAACAAAGTTACTCTCTTAAATAAAACAAACATAAATAATCATACTAATCCC
* * * *
76480 TATTATTTTCAGGATTTGGCACCATAAACTTAGTCTTCTAATAAGGATGCACGATATTGACGCT
456 CATTATTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGACGCT
* * * * * *
76544 CCATGAAA-TTAGTCTTCCATTAAGGATACACGATATTTATGCTTTGGTTTTGTAAGAAAGGTAT
1 CCAT-AAACTTAGTCTTCCAATAAGGATACACGATATTGAAGCATTGGTTTTATAAGAAAGGCAT
* * * *
76608 TCTGCCCGCCAATTTTTTTAAAG-TCTATGTCCGTGCCTCAATTATGACAAACATTGATTCTAGT
65 TCTGCCCACCAATTTTTGTAAAGCTC-AAGTCCGTGCCTCAATTATGACAAACATAGATTCTAGT
*
76672 AATGAACTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCACTAAGATAAATGATA
129 AACGAACTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCACTAAGATAAATGATA
* * * * *
76737 TTGAAGCATTTTATTTTG-TATGTAAATCTTTTCTTTGCCGTATTTTCCTTAAGATCAGA-GATT
194 -TGAAGCATTTTATTTTGCT-CGGAAATCTATTCTTTGCCCTATTTTCCTTAAAATCA-ATG-TT
* ** * * * *
76800 -ATCCCTTCAATAAGGCAAGCATTAATTCTTGTAATAGTCTCTAATCATTCCATGTTTGGGAACC
255 CATCCCTTAAATAAGGCAAGCATTAATTCTCATAACAATCTCCAATCATTCCATGATTGGGAACC
* *
76864 AAAAACACATTCTTTTCATTAGGATACTTA-ACATTGATG-TATTGGGGTCGCAAGAAAAGCATT
320 AAAAACACATTCCTTTCATTAGGATAC-AAGACATTGATGCT-TTGGGGTCGCAAGAAAAGCATT
* * ** * *
76927 TCTTTCAACCACTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAAA-AATCAT
383 TATTTCAACCACTTTTGATAGAAACAAAGTTACTCTCTTAAATAAAACAAACAT-AAATAATCAT
*
76991 ACTAATCCCCATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATA
447 ACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATA
77056 TTGA
512 TTGA
77060 AGCATTGGTT
Statistics
Matches: 435, Mismatches: 72, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
518 2 0.00
519 158 0.36
520 268 0.62
521 7 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (519 bp):
CCATAAACTTAGTCTTCCAATAAGGATACACGATATTGAAGCATTGGTTTTATAAGAAAGGCATT
CTGCCCACCAATTTTTGTAAAGCTCAAGTCCGTGCCTCAATTATGACAAACATAGATTCTAGTAA
CGAACTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCACTAAGATAAATGATATG
AAGCATTTTATTTTGCTCGGAAATCTATTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCC
TTAAATAAGGCAAGCATTAATTCTCATAACAATCTCCAATCATTCCATGATTGGGAACCAAAAAC
ACATTCCTTTCATTAGGATACAAGACATTGATGCTTTGGGGTCGCAAGAAAAGCATTTATTTCAA
CCACTTTTGATAGAAACAAAGTTACTCTCTTAAATAAAACAAACATAAATAATCATACTAATCCC
CATTATTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGACGCT
Found at i:79359 original size:476 final size:477
Alignment explanation
Indices: 77488--83726 Score: 7186
Period size: 476 Copynumber: 13.2 Consensus size: 477
77478 GATTTGGCAG
* * * **
77488 GGCTTTCTTCCCACCAATTTTTATAAAGCCTAAGTTCGTGCTTCAATTGTGACAAATGTGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * * *
77553 CAGTAATGATCTTTATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAAT
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * * * * * *
77618 GATATGGTTGATTTT-TCTTCGCATGTAAATCTTTTGTTTGCACTATTTTCCTAAAAATGAAAGT
131 GATATTGATGATTTTCT-TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * *
77682 TCATCCCTTAAATAAGGCAA-CAATTGATTCTCATAACAGTCTCTATTCTTTTCATGATTAGGAA
195 TCATCCCTTAAATAAGGCAAGC-ATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAA
* * *** *
77746 TCAAAAACACATTCCTTTTATTAGGATACATGACATTGATGTGTTAGG-GTCGCAAGAAAAGCAT
259 CCAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCAT
* * * * * *
77810 TTCTTTCAACTACTTTTGATAGAATCAAAGTTTGTCTCGTAAATAAGACAAACATAAATAATCGT
324 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
* * * *
77875 ACCAATCCCCATTCTTTTCAGGATTAGGCACCATAACCTTAGTCTTCTAATAAGGATACATGATT
389 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
* * * * *
77940 TTGAAGCATTGCTTTTGTAAGAAT
454 TTGATGCTTTGGTTTCGTAAGAAA
* * * * *
77964 GGCTTTCTTCCCACTAATTTTTGTGAAGCCCAAGTTCGCGCCTCAATTGTGACAAACATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * * * * *
78029 TAGTAATGATCTTCATTGATTTTGTGGTTAGACAGTATAAACACATTCTTCTCATTAGGATAAAT
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * *
78094 GATATGGATGATTTTCTTTTTCATGAAAAGCTTTTCTTTG-CCT-TTTTCTTCTTAAAATCAAAG
131 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC--CTTAAAATCAAAG
** * * ** * *
78157 AACATCCCTTAAATAAGGCAGGCATTGATTCTCTTAACAGTCTCCACCCTTCTCAAGATTGGGAA
194 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAA
* * * * ** ** * * * *
78222 CTAGAAACACATTCCTTTCATTATGATACAAGATGTTG-TTGCTTTCGTGTCACAAAAAAAGCTT
259 CCAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCAT
*
78286 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATAGTCAT
324 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
* * *
78351 ACTAATCCCCATTC-ATTCAAGG-TTAGGCACCATAAACTTAGTCTCCTTATAAGGATACACGAT
389 ACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGAT
*
78414 ATTGATGCTTTGGTTTCATAAGAAA
453 ATTGATGCTTTGGTTTCGTAAGAAA
* *
78439 GGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
** * * *
78504 TAGTAATGATCTTTGTTCACTTTGTGATTAGGCACTATAAACACATACTCTTCATTAGGATAAAA
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* *
78569 GATATTGATGATTTTCTCTTACATGGAAATCTTTTCTTTGCCCT-TTTTCCCTTAAAATCAAAGT
131 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTTAAAATCAAAGT
* * * * *
78633 TCATCCCATAAATAATGCAAGCATTGATTCTTGTAACAATCTCTATTCTTTTCATGATTGGGAA-
195 TCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAAC
* * * * *
78697 CAAGAAACAAATTCC-TTC---------CGTGACATTGATGA-TTTGGTGTCACAAGCAAAGCAT
260 CAA-AAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCAT
* * * * *
78751 TTCTTTCAACCATTTTTGATAGATTCAAAGTTT-TCCTCTCAAGTAAGACAAACCTAAATAGTC-
324 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGTCA
* *
78814 TGAGTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACATGA
388 T-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGA
*
78879 TATTGATGCTTT-GTTTTGTAAGAAA
452 TATTGATGCTTTGGTTTCGTAAGAAA
* * * *
78904 GGCTTTTTTCCTACCAACTTTTT-TAAAGTCTAAGTTCGTACCTCAATTGTGAGAAACATGGATT
1 GGCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATT
* * * * * *
78968 CTAGCAATGATCTTTATTCACTTTGTGACTATGCAATATAAACACATTCTCCTCATTAAGATAAA
65 CTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* ** * * * *
79033 TGATATTGAAGCATTTTCTTTTGTTTGGAAATCTTTTGTTTGCCGTATTTTCCTAAAAATCAAAA
130 TGATATTGATG-ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
* * * * *
79098 TTCATCCCTTAAATAAGGTAACCATTGATTGTCGTAACAATCTCCATTCTCTTCATGATTGGGAA
194 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAA
* * * * * *
79163 CCAGAAACACATTCCTTTCATTAGGATACAAGACATT-ATCACTTTAGTGTGGCGAGAAAAGCTT
259 CCAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCAT
* * * * *
79227 TTATTTCAACCAATTTTGATATAATCAAAGTTTTTCTCTTAAATAAGACAAACATAAATAGTCAT
324 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
* * *
79292 ACTAATCCCTATTCTTTACAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGTATACACGATA
389 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
* *
79357 TTGACGCTTTGG-TTCATAAGAAA
454 TTGATGCTTTGGTTTCGTAAGAAA
* * * *** *
79380 GGCTTTCTTCCCACCAATTTTTGCAAAGTCTAATTTCATGCCTTGGTTATGACAAACATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * * *
79445 TAGTAATGATCTTCATTGATTTTGTGATTACGCACTATAAACACATTATCCTCATTAGGATAAAT
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* ** * * * *
79510 GATATGGATGATTTTCTTTTGCATGTTAATCTTTTCTTTGCCCTACTTTCCTAAAAATCGATGTT
131 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * *
79575 CAT-CCTATAAATAAGGCAACCATTGATTCTCATAAGAGTCTCCACTATTTTCAAGATTGGGAAC
196 CATCCCT-TAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAAC
* * * *
79639 TAAAAAACACATTCTTTTCATTAGGATATATGACATTGA-CGCTTTGG-GATCGCAAGAAAAGCA
260 -CAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTG-TCGCAAGAAAAGCA
* * * * *
79702 TTTTTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAATCA
323 TTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* * * * * *
79767 TGCTAGTCCCCATTCTATTT-AGGATTAGGCACGATAAAATTAATCTTCTAATAAGGATGCACGA
388 TACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGA
* *
79831 TATTGAAGCATTGGTTTCGTAAGAAA
452 TATTGATGCTTTGGTTTCGTAAGAAA
* * * * * * *
79857 GGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTTGTGCCTAAATTGTAACAACCGTTGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * * * * * *
79922 TAGTAATGATCTTCATTGATTTTGTGATTAGGCACTATAAACAAATTTTCCACTTTAGGAAAAAT
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * *
79987 GATATGGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAATGTT
131 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * *
80052 CATCTCTTAAATAAGGCAAGCTTTGATTCTCGAAACAATCACCATTCTTTTCATGATTGGGAACC
196 CATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAACC
* * * * * *
80117 AAAAACACATTCCTTTCATTAGTATACATGGCATTGAT-GCTATGGGGTAGCAAGAAAAGCATTT
261 AAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCATTT
* * * * * *
80181 CTTTCAA-CAGTATTTGATAGAATCAAAGTTTGTCTCCTCAATAAGATAAACAAGAATAATCATA
326 CTTTCAACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA
* * * *
80245 CTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTTTTCTAATAACGATACATGATAT
390 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATAT
*
80310 TGATGGTTTGGTTTCGTAAGAAA
455 TGATGCTTTGGTTTCGTAAGAAA
* * *
80333 AGCTTT-TTCCCTCTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * * *
80397 TAGTAATTATCTTAATTCACTTTGTGACTAGGCACAATAAACACATTCTCCTCATTAGGATAAAT
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * ** *
80462 GGTATTGATGATTTTCTTTTGCATAGAAATCTTTT-TTT-CCCTATTTTGTTTAAAATTAAAGTT
131 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * * *
80525 CAATCCCTTAAATAAGGTAAGCATTGATTCTCGTAATAGTCCCCACTCTTTTCAAGATTGAGATC
196 C-ATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAAC
* * * ** * * *
80590 TAGAAACACATTCCTTTCATTAGGATATATGATGTCG-TCACTTTGGGGTCACAAGAAAAGCATT
260 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCATT
* * *
80654 TCTTTCAACCGTTTTTGATAGAATC-AAGTTTTGTCTCTTAAATAAAACAAACATGAATAGTTAT
325 TCTTTCAACCATTTTTGATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
* * *
80718 AGTAATCCCCATTCCTTTCAGGATTAGGCACCATAAACTTTGTCTTCTAATAAGGATACACGATA
389 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
*
80783 TTGATGCTTTGGTTTTGTAAGAAA
454 TTGATGCTTTGGTTTCGTAAGAAA
* * * * * * **
80807 GGCTTTCTTCCTACC-ATTTTTTTATAGTTTAAATTCGTGCCTCAATTGCGGGAAACATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * *
80871 TAGTAATGATCTTCATTCAAC-TTGTGATTAGGCACTATAAATACATACTTCTCATTAGGATAAA
66 TAGTAATGATCTTCATTC-ACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* * * * * * *
80935 TGGTATTGATGATTTTCTCTTCCATGAAAATCTTTTCTTTACCCTATTTTCCTAAAAATCAATGT
130 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * * * *
81000 TCATCCTTTAAATAAGGCAAGCATTAATTCACGTAACAGTTTCCTTTCTTTTCATGATTGGGAAC
195 TCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAAC
* * *
81065 CATAAACACATTCCTTTCATTAGGATACAAGATATTGA-CACTTTGGTGTCGC-AGAAAAGCATT
260 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCATT
*
81128 TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATA-ACAAACATGAATAGTCAT
325 TCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACATGAATAGTCAT
* * * * * * * *
81192 AGTAATCCCCATTCTTTTTAGGGTTAGGCACCATAAATTTAGTCATCTAATAAGGTTACATGAAA
389 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
* *
81257 TTGATGCTTTGGTTTCATGAGAAA
454 TTGATGCTTTGGTTTCGTAAGAAA
* * *
81281 AGCTTT-TTCCCCCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAATTGTGACAAACATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * * * * * * *
81345 GAGTAATGATCTTAATTCATTTTGTGATTAGGCACAATAAATAAATTCTCCTAATTGGGATAAAT
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * *
81410 GATATTGATGATTTTCTTTTGTATGGAAATC-TTTCTTTG-CTTATTTTCTTTAAAATTAAAGTT
131 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * * * * *
81473 CATCCCTGAAATAAGACAAGCACTGATTCTCGAAATAGTCTCTACTT-TTCTCAAGATTAGGAAC
196 CATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCA-TTCTTTTCATGATTGGGAAC
* * *
81537 CACAAACATATTCCTTTCATTAGGATACAT----TT--T--C----GTGTCGCAAGGAAAGCATT
260 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCATT
* * *
81590 TCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATAAATAATCATA
325 TCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA
* * * *
81655 CTAATCCCCATTCTTTTCAGGATAAGGCACCATAAACTTAGTCTCCTCATAAGGATACACGATGT
390 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATAT
81720 TGATGCTTTGGTTTCGTAAGAAA
455 TGATGCTTTGGTTTCGTAAGAAA
* * * *
81743 GGCTTTCTTTCCACCAATTTTTGTAAAGTCTAAGTTGGTGCCTTAATTTTGACAAACATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * *
81808 TAGTAATGATTTTCCTTCACTTTGTGATTAGGCACTATAAACACATACTCCTCATTAGGATAAAT
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * *
81873 GATATTGATGATTTTCTCTTGCATGGAAATCTATTATTTGCCCTTTCTTTCCTTAAAATCAAAGT
131 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT-TTTCCTTAAAATCAAAGT
* * * * * * *
81938 TCATCCTTTAAAAAAGGTAAGCATTGATTCTCATAATAGTCTCCATTCTTTTAATGATTGTGAAC
195 TCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAAC
* * * * * *
82003 CAAAAACACATT-CTTGTCATTAAGATATACGACATTG-TCGCTTTGGTGTCTCAAGAAAAACAT
260 CAAAAACACATTCCTT-TCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCAT
* * * * * *
82066 TTCTTTCAACCATTTTTGATAAAATCAAGGTTTATCTTTTAAATAAGACGAACATGAATAGTCCT
324 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
* *
82131 ACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACTTAGTCTTCTCAA-AAGGGTACACGAT
389 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT-AATAAGGATACACGAT
* *
82195 ATTGATGCTTTGGTTTTGTACGAAA
453 ATTGATGCTTTGGTTTCGTAAGAAA
* * ** * ** *
82220 AGCTTTCTTCCTAATAATTTTTGTAAATTCTAAGTTCGCACCTCAATTATGACAAACATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
** * * * * * *
82285 TAGTTGTGATCTTCATTCATTTTGCGGTTAGG-AGCTATAAACAGATTTCTCCTCATTAAGATAC
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCA-CTATAAACACA-TTCTCCTCATTAGGATAA
* * * * * *
82349 ATAATATTGATAATTTCCTTTTGCATGGAAATCTTTTCTTTACCATCTTTTCCTTAAAATCAAAG
129 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
* * * * * * *
82414 CTT-TTCCCTTAATTAAGGCAA-CTGTTGATTCTCATACCAATCTCCAATCTTTTCATGATTGGG
194 -TTCATCCCTTAAATAAGGCAAGC-ATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
* * * *
82477 AACCAAAAACATATTCCTTTTATTAGGATACATGACATTGA-CA-TATTGGGGTTGCAAGAAAAG
257 AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACT-TTGGTGTCGCAAGAAAAG
* *
82540 CATTTCTTTCATCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAAT
321 CATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * *
82605 CATACTAATCCTCATTCTTTTTAGGATTAGGCACCATAAACTT-TTCCTTCTCATAAGGATACAC
386 CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT-CTTCTAATAAGGATACAC
* ** *
82669 GATATTGAAGCAATGGTTTCATAAGAACA
450 GATATTGATGCTTTGGTTTCGTAAGAA-A
* * * * *** * * *
82698 -GCTTTCTTCTCACCAATTTTTTTAAAGCCTAAGTTTGTAAGTCAATTGTAACAAACCTGGACTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * *
82762 TAGTAATGATCTTTATTCACTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAAAAAT
66 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * *
82827 GATATTGATCATTTTCTTTTACATGTAAATCTTTTCTTTGCCCTATTTTCC-TAAAAGTCAATGT
131 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA-TCAAAGT
* * * * *
82891 TCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCT-CTTTTTTTTCATAACTGGGAAC
195 TCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAAC
* * * * * * *
82955 TAGACATACATTCCTTTCATTAGGATATAAGACATTGA-CACTTTGGTGTCGCAACAAAAGCATT
260 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCATT
* *
83019 TCCTTCAACCATTTTTGATAGAATCAAAGTTTG--TC-----T-AGCACAAACATGAATAGTCAC
325 TCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG-ACAAACATGAATAGTCAT
* * * * **
83076 AGTATTACCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACATAATA
389 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
*
83141 TTGATGCTTCT-GTTCCGTAAGAAA
454 TTGATGCTT-TGGTTTCGTAAGAAA
* ** **
83165 AGCTTT-TTCCC-CCTAATTTTTACAAAGTCTAAG-TCTGTGAGTCAATTGTGACAAACATGGAT
1 GGCTTTCTTCCCACC-AATTTTTGTAAAGTCTAAGTTC-GTGCCTCAATTGTGACAAACATGGAT
* * *
83227 TCTAGTAATGATCTTAATTCACTTTGTGATTAGGCACGATAAACACATTCTCCTCTTTAGGATAA
64 TCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
* *
83292 ATGATATTGATGATTTTTCTTTTGCATGGAAATC-TTTCTTTGCCCTATTTTCTTTAAAATTAAA
129 ATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* ** * * * * *
83356 GTTTATCCCTTAAATAAGGCAAGCATTGATTCTCAAAATAGTCTCTATTCTTCTCAAGATAGGGA
193 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGA
* * * *
83421 ACCAAAAACACATTCCTTTCATTAGGATACATGACATTG-TCGCTTTGGCGTCACAAGGAAAGCA
258 ACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCA
* *
83485 TTT-TATTCAACCGTTTTTGATAGAATCAAGGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
323 TTTCT-TTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* * * * *
83549 ATACTAATCCCCATTCTTTTTAGGATTAGGCACCACAAACTTATTCTTCTCATTAGGATACACGA
387 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGA
*
83614 TATTGATGCTTTGGTTTTGTAAGAAA
452 TATTGATGCTTTGGTTTCGTAAGAAA
* * *
83640 AGC-TT-TTCCC-CCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAATATGGATTC
1 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
83702 TAGTAATGATCTTCATTCACTTTGT
66 TAGTAATGATCTTCATTCACTTTGT
83727 ATGGAAATCT
Statistics
Matches: 4848, Mismatches: 800, Indels: 233
0.82 0.14 0.04
Matches are distributed among these distances:
461 8 0.00
462 148 0.03
463 136 0.03
464 8 0.00
465 233 0.05
466 253 0.05
467 186 0.04
468 213 0.04
469 2 0.00
470 4 0.00
471 1 0.00
472 93 0.02
473 111 0.02
474 662 0.14
475 841 0.17
476 1080 0.22
477 805 0.17
478 64 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (477 bp):
GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
CATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAACC
AAAAACACATTCCTTTCATTAGGATACATGACATTGATCACTTTGGTGTCGCAAGAAAAGCATTT
CTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAC
TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATT
GATGCTTTGGTTTCGTAAGAAA
Found at i:87405 original size:13 final size:13
Alignment explanation
Indices: 87383--87424 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
87373 TCACTGTTCA
87383 TGTATCGATACAT
1 TGTATCGATACAT
* *
87396 TGTATTGATACAG
1 TGTATCGATACAT
87409 TGTATCGATACAT
1 TGTATCGATACAT
87422 TGT
1 TGT
87425 GAATAGTATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:89437 original size:476 final size:475
Alignment explanation
Indices: 88194--90218 Score: 2300
Period size: 475 Copynumber: 4.3 Consensus size: 475
88184 TGAGCTAAGA
* * *
88194 CTTTCATTAGGATACATGACATTGATCCTTTGGTGTCACAAGCAAAGTATTCCTTTCAATCGTTT
1 CTTTCATTAGGATACATGACATTG-TCCTTTGGTGTCGCAAGCAAAGCATT-CTTTCAACCGTTT
* * * * * *
88259 TTGATAGAATCAAAGTTTGCCTCTCAAATAAGACAAACCTAAATAGTCATAGTAATCCCCTTTCT
64 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAATAATCCCCATTCT
* * * *
88324 TTTTAGGATTAGGCACCATAAACTTAGTCTTCTAA-AAGGGATACACGATATTAATGCTTTGGTT
129 TTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAA-GGATACACGATATTGATGCTTTGATT
* * * *
88388 TTATAAGAAAGGCTTTCTT-CCCAACAATTTTGTAAAGTCTAAG-CTCATGCCTCAATTATGACA
193 CTATAAGAAAAGCTTTCTTCCCCAA-ATTTTTGTAAAGTCTAAGTCTCATGCCTCAATTGTGACA
* * * *
88451 AACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACAGATTTCTCTTT
257 AACATGGATTCTAGTAATGATCTTAATTCACTTTGTGATTAGGCACTATAAACACA-TTCTCCTC
*** * * *
88516 ATTA-AGATGGAGGATATTGATAATTTTCTTTT-CATGGAAATCTTTTCATTAG-CCTATTTTCC
321 ATTAGAGAAAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCTATTTTCC
** *
88578 TTAAAATCAAAGTTTTTCCCTTAAATAAGGCAACCATTGATTCTCGTAACAATCTCTATTCTTTT
385 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCTATTCTTTT
88643 CATGATTGGGAACCAAAAACACATTC
450 CATGATTGGGAACCAAAAACACATTC
* * * * * * * * *
88669 GTTTTATTAAGATACATGACATTGACATATTGAG-GTTGCAAGTAAAGCATTTCTTTCATCTG-T
1 CTTTCATTAGGATACATGACATTGTCCT-TTG-GTGTCGCAAGCAAAGCA-TTCTTTCAACCGTT
* * *
88732 TTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAAAAATCATAATAATCCCCATTC
63 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAATAATCCCCATTC
* * * * * *
88797 TTTTCAGGATTAGGCACCATAAACTTAGTCTTGTCATAAGGATACACGATATTGAAGCATTGGTT
128 TTTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGATT
* * * * *** *
88862 -TCATAAGAAAGGCTTTCTTCCCACCAATTTTTTTAAAGCCTAAGT-TCATAAGTCAATTGTAAC
193 CT-ATAAGAAAAGCTTTCTTCCC-CAAATTTTTGTAAAGTCTAAGTCTCATGCCTCAATTGTGAC
* * * *
88925 AAACATGGATTCTAGTAATGATCTTCACTT-ACTTTGTAATTAGGCACCATAAATACATTCTCCT
256 AAACATGGATTCTAGTAATGATCTT-AATTCACTTTGTGATTAGGCACTATAAACACATTCTCCT
* *
88989 CATTAGA-AAAAATGATATGGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCCTATTTTCC
320 CATTAGAGAAAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* * * * * *
89053 TAAAAATTAATGTTCATCCTTTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTCCT-TTCTTT
385 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCT-CTATTCTTT
* *
89117 TCATGAATGGGAACCAGAAACACATTC
449 TCATGATTGGGAACCAAAAACACATTC
* * * * *
89144 CTTTCATTAGGATACAAGATATTAGCCCTTCGGTGTCGCAAGAAAAGCACTTCTTTCAACCGTTT
1 CTTTCATTAGGATACATGACATT-GTCCTTTGGTGTCGCAAGCAAAGCA-TTCTTTCAACCGTTT
* * * * *
89209 TTGGTAGAATCAAAGTTTGTCTCTTAAATAACACAAACATGAATTGTCACAATAATACCCATTCT
64 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAATAATCCCCATTCT
* * * *
89274 TTTCAAGATTAGGCACCATAAACATAGTCTTCTAATAAAGATACATGATATTGATGCTTCGATTC
129 TTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGATTC
* * * * *
89339 TGTAAGAAAAGCTTTTTTCCTCCAAATTTTTGTAAAGTCTAAGTCT-GTGCCTCTACTGTGACAA
194 TATAAGAAAAGCTTTCTTCC-CCAAATTTTTGTAAAGTCTAAGTCTCATGCCTCAATTGTGACAA
* * * *
89403 ACATGCATTCTAGTAATAATCTTAATTCACTTTGTGATTAGGCACAATAAACACATTCTCCTTAT
258 ACATGGATTCTAGTAATGATCTTAATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* * *
89468 TAG-GATAAAA--AAAGTTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTGCCCAATTTTCTT
323 TAGAGA-AAAATGATA-TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * * *
89529 TAAAATTAAATTTCCTCCCTTAAATAAGGCAAGCATTGATTCTCGAAACAGTATCTACTCTTCTT
386 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCTATTCTT-TT
*
89594 -AAGATTGGGAA-CATAAAACACATTC
450 CATGATTGGGAACCA-AAAACACATTC
* * * ** * *
89619 CTTTCATTAGGACACATGATATTGTTGCTTTGGCATTGCAAGGAAAGCATATCTTTCAACCGTTT
1 CTTTCATTAGGATACATGACATTG-TCCTTTGGTGTCGCAAGCAAAGCAT-TCTTTCAACCGTTT
* * *
89684 TTGATAGAATTAAGGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
64 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAATAATCCCCATTCT
* ** *
89749 TTTCGAGATTAGGCACCATAAACTTAGTCTTCTCCTAAGGATACATGATATTGATGCTTTGATT-
129 TTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGATTC
* *
89813 TCATAAGAAAAGCTTTCTTGCCTCC-AATTTTTGTAAAGTCTAAGT-TCGTGGCTCAATTGTGAC
194 T-ATAAGAAAAGCTTTCTT-CC-CCAAATTTTTGTAAAGTCTAAGTCTCATGCCTCAATTGTGAC
* **
89876 AAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATAGTCCTC
256 AAACATGGATTCTAGTAATGATCTTAATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTC
* * * * *
89941 GTTAG-GATAAATGACATTGATGATTTTCTCTTACATGGAAATCTTTTCTTTGCCC-ATTTTTCC
321 ATTAGAGAAAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCC
* * * * * *
90004 CTAAAATCAAAGTTCATCCGTTAAATAAGGCTAGCAATGACTCTCGTAACAATCTCCATTCTTTT
385 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCTATTCTTTT
* * *
90069 CATGATTAGGAACCAGAAACATATTC
450 CATGATTGGGAACCAAAAACACATTC
* * * * *
90095 CTTTCATTGGGATATATGACATTGATGCTTTGGTGTCGCAAGCAAAGCATTTTTTTCAACTGTTT
1 CTTTCATTAGGATACATGACATTG-TCCTTTGGTGTCGCAAGCAAAGCA-TTCTTTCAACCGTTT
* * * * *
90160 TTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCTAAATAGTTATAGTAATCCC
64 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAATAATCCC
90219 TAAATATGAG
Statistics
Matches: 1305, Mismatches: 207, Indels: 75
0.82 0.13 0.05
Matches are distributed among these distances:
473 1 0.00
474 177 0.14
475 666 0.51
476 451 0.35
477 10 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
CTTTCATTAGGATACATGACATTGTCCTTTGGTGTCGCAAGCAAAGCATTCTTTCAACCGTTTTT
GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAATAATCCCCATTCTTT
TCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGATTCTA
TAAGAAAAGCTTTCTTCCCCAAATTTTTGTAAAGTCTAAGTCTCATGCCTCAATTGTGACAAACA
TGGATTCTAGTAATGATCTTAATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
AGAAAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
TCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCTATTCTTTTCATGAT
TGGGAACCAAAAACACATTC
Found at i:90032 original size:951 final size:948
Alignment explanation
Indices: 88194--90206 Score: 2570
Period size: 951 Copynumber: 2.1 Consensus size: 948
88184 TGAGCTAAGA
* * * *
88194 CTTTCATTAGGATACATGACATTGATCCTTTGGTGTCACAAGCAAAGTATTCCTTTCAATCGTTT
1 CTTTCATTAGGATACATGACATT-AGCCTTTGGTGTCGCAAGCAAAGCATT-CTTTCAACCGTTT
* * * * * * *
88259 TTGATAGAATCAAAGTTTGCCTCTCAAATAAGACAAACCTAAATAGTCATAGTAATCCCCTTTCT
64 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCACAATAATACCCATTCT
* * * * * * *
88324 TTTTAGGATTAGGCACCATAAACTTAGTCTTCTAAAAGGGATACACGATATTAATGCTTTGGTTT
129 TTTCAAGATTAGGCACCATAAACATAGTCTTCTAAAAGAGATACACGATATTAATGCTTCGATTC
* *
88389 TATAAGAAAGGCTTTCTTCCCAACAATTTTGTAAAGTCTAAGCTCATGCCTCAATTATGACAAAC
194 TATAAGAAAAGCTTTCTTCCCAACAATTTTGTAAAGTCTAAGCTCATGCCTCAACTATGACAAAC
* * * * * *
88454 ATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACAGATTTCTCTTTATT
259 ATGCATTCTAGTAATAATCTTAATTCACTTTGTGATTAGGCACAATAAACACATTTCTCCTTATT
* ** * *
88519 AAGATGGAGGATATTGATAATTTTCTTTTCATGGAAATCTTTTCATTAGCCTATTTTCCTTAAAA
324 AAGATGAAAAAAATTGATAATTTTCTTTTCATGGAAATCTTTTCATTAGCCAATTTTCCTTAAAA
* * * * *
88584 TCAAAGTTTTTCCCTTAAATAAGGCAACCATTGATTCTCGTAACAATCTCTATTCTTTTCATGAT
389 TCAAAGTTTCTCCCTTAAATAAGGCAACCATTGATTCTCGAAACAATATCTACTCTTTTCAAGAT
* * * * *
88649 TGGGAACCAAAAACACATTCGTTTTATTAAGATACATGACATTGACATATTGAGGTTGCAAGTAA
454 TGGGAACCAAAAACACATTCCTTTCATTAAGACACATGACATTGACATATTGAGATTGCAAGGAA
* * *
88714 AGCATTTCTTTCATCTGTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAAAAA
519 AGCATATCTTTCAACCGTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAAAAA
*
88779 TCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTGTCATAAGGATACAC
584 TCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC
* * *
88844 GATATTGAAGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTTTAAAGCCTAAGTTC
649 GATATTGAAGCATTGATTTCATAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTC
88909 ATAAGTCAATTGTAACAAACATGGATTCTAGTAATGATCTTCACTTACTTTGTAATTAGGCACCA
714 ATAAGTCAATTGTAACAAACATGGATTCTAGTAATGATCTTCACTTACTTTGTAATTAGGCACCA
* * * * * *
88974 TAAATACATTCTCCTCATTAGAAAAAATGATATGGATGATTTTCTTTTGCATGTAAATCTTTTCT
779 TAAACACATACTCCTCATTAGAAAAAATGACATGGATGATTTTCTCTTACATGGAAATCTTTTCT
* * * * * *
89039 TTGCCCTATTTTCCTAAAAATTAATGTTCATCCTTTAAATAAGGCAAGCATTTATTCTCGTAACA
844 TTGCCCTATTTTCCTAAAAATCAAAGTTCATCCGTTAAATAAGGCAAGCAATGACTCTCGTAACA
* * *
89104 GTCTCCTTTCTTTTCATGAATGGGAACCAGAAACACATTC
909 ATCTCCATTCTTTTCATGAATAGGAACCAGAAACACATTC
* * * *
89144 CTTTCATTAGGATACAAGATATTAGCCCTTCGGTGTCGCAAGAAAAGCACTTCTTTCAACCGTTT
1 CTTTCATTAGGATACATGACATTAG-CCTTTGGTGTCGCAAGCAAAGCA-TTCTTTCAACCGTTT
* * * *
89209 TTGGTAGAATCAAAGTTTGTCTCTTAAATAACACAAACATGAATTGTCACAATAATACCCATTCT
64 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCACAATAATACCCATTCT
* *
89274 TTTCAAGATTAGGCACCATAAACATAGTCTTCTAATAA-AGATACATGATATTGATGCTTCGATT
129 TTTCAAGATTAGGCACCATAAACATAGTCTTCTAA-AAGAGATACACGATATTAATGCTTCGATT
* * * * * *
89338 CTGTAAGAAAAGCTTTTTTCCTCCAA-ATTTTTGTAAAGTCTAAG-TCTGTGCCTCTACTGTGAC
193 CTATAAGAAAAGCTTTCTT-C-CCAACAATTTTGTAAAGTCTAAGCTC-ATGCCTCAACTATGAC
89401 AAACATGCATTCTAGTAATAATCTTAATTCACTTTGTGATTAGGCACAATAAACACA-TTCTCCT
255 AAACATGCATTCTAGTAATAATCTTAATTCACTTTGTGATTAGGCACAATAAACACATTTCTCCT
* * *
89465 TATTAGGAT-AAAAAAAGTTGATGATTTTCTTTTGCATGGAAATC-TTTC-TTTGCCCAATTTTC
320 TATTAAGATGAAAAAAA-TTGATAATTTTCTTTT-CATGGAAATCTTTTCATTAG-CCAATTTTC
* * * *
89527 TTTAAAATTAAA-TTTCCTCCCTTAAATAAGGCAAGCATTGATTCTCGAAACAGTATCTACTCTT
382 CTTAAAATCAAAGTTT-CTCCCTTAAATAAGGCAACCATTGATTCTCGAAACAATATCTACTCTT
* * *
89591 CTT-AAGATTGGGAA-CATAAAACACATTCCTTTCATTAGGACACATGATATTGTTGC-T-TTG-
446 -TTCAAGATTGGGAACCA-AAAACACATTCCTTTCATTAAGACACATGACATTG--ACATATTGA
* * *
89651 GCATTGCAAGGAAAGCATATCTTTCAACCGTTTTTGATAGAATTAAGGTTTGTCTCTTAAATAAG
507 G-ATTGCAAGGAAAGCATATCTTTCAACCG-TTTTGATAGAATCAAAGTTTGTCTCCTAAATAAG
* * *
89716 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-GAGATTAGGCACCATAAACTTAGTCTT
570 ACAAACATGAAAAATCATAATAATCCCCATTCTTTTCAG-GATTAGGCACCATAAACTTAGTCTT
* * * * * *
89780 CTCCTAAGGATACATGATATTGATGCTTTGATTTCATAAGAAAAGCTTTCTTGCCTCCAATTTTT
634 CTCATAAGGATACACGATATTGAAGCATTGATTTCATAAGAAAAGCTTTCTTCCCACCAATTTTT
* * * *
89845 GTAAAGTCTAAGTTCGT-GGCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA-TTCAC
699 GTAAAGCCTAAGTTCATAAG-TCAATTGTAACAAACATGGATTCTAGTAATGATCTTCACTT-AC
* * * * * * *
89908 TTTGTGATTAGGCACTATAAACACATAGTCCTCGTTAGGATAAATGACATTGATGATTTTCTCTT
762 TTTGTAATTAGGCACCATAAACACATACTCCTCATTAGAAAAAATGACATGGATGATTTTCTCTT
*
89973 ACATGGAAATCTTTTCTTTGCCC-ATTTTTCCCT-AAAATCAAAGTTCATCCGTTAAATAAGGCT
827 ACATGGAAATCTTTTCTTTGCCCTA-TTTT-CCTAAAAATCAAAGTTCATCCGTTAAATAAGGCA
* *
90036 AGCAATGACTCTCGTAACAATCTCCATTCTTTTCATGATTAGGAACCAGAAACATATTC
890 AGCAATGACTCTCGTAACAATCTCCATTCTTTTCATGAATAGGAACCAGAAACACATTC
* * * *
90095 CTTTCATTGGGATATATGACATTGATG-CTTTGGTGTCGCAAGCAAAGCATTTTTTTCAACTGTT
1 CTTTCATTAGGATACATGACATT-A-GCCTTTGGTGTCGCAAGCAAAGCA-TTCTTTCAACCGTT
* *
90159 TTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCTAAATAGT
63 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGT
90207 TATAGTAATC
Statistics
Matches: 910, Mismatches: 130, Indels: 45
0.84 0.12 0.04
Matches are distributed among these distances:
949 13 0.01
950 340 0.37
951 547 0.60
952 9 0.01
953 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (948 bp):
CTTTCATTAGGATACATGACATTAGCCTTTGGTGTCGCAAGCAAAGCATTCTTTCAACCGTTTTT
GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCACAATAATACCCATTCTTT
TCAAGATTAGGCACCATAAACATAGTCTTCTAAAAGAGATACACGATATTAATGCTTCGATTCTA
TAAGAAAAGCTTTCTTCCCAACAATTTTGTAAAGTCTAAGCTCATGCCTCAACTATGACAAACAT
GCATTCTAGTAATAATCTTAATTCACTTTGTGATTAGGCACAATAAACACATTTCTCCTTATTAA
GATGAAAAAAATTGATAATTTTCTTTTCATGGAAATCTTTTCATTAGCCAATTTTCCTTAAAATC
AAAGTTTCTCCCTTAAATAAGGCAACCATTGATTCTCGAAACAATATCTACTCTTTTCAAGATTG
GGAACCAAAAACACATTCCTTTCATTAAGACACATGACATTGACATATTGAGATTGCAAGGAAAG
CATATCTTTCAACCGTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAAAAATC
ATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGA
TATTGAAGCATTGATTTCATAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCAT
AAGTCAATTGTAACAAACATGGATTCTAGTAATGATCTTCACTTACTTTGTAATTAGGCACCATA
AACACATACTCCTCATTAGAAAAAATGACATGGATGATTTTCTCTTACATGGAAATCTTTTCTTT
GCCCTATTTTCCTAAAAATCAAAGTTCATCCGTTAAATAAGGCAAGCAATGACTCTCGTAACAAT
CTCCATTCTTTTCATGAATAGGAACCAGAAACACATTC
Found at i:91071 original size:884 final size:883
Alignment explanation
Indices: 89363--91102 Score: 2427
Period size: 884 Copynumber: 2.0 Consensus size: 883
89353 TTTTCCTCCA
* * *
89363 AATTTTTGTAAAGTCTAAGTCTGTGCCTCTACTGTGACAAACATGCATTCTAGTAATAATCTTAA
1 AATTTTTCTAAAGTCTAAGTCTATGCCTCAACTGTGACAAACATGCATTCTAGTAATAATCTTAA
*
89428 TTCACTTTGTGATTAGGCACAATAAACACATTCTCCTTATTAGGATAAAAAAAGTTGATGATTTT
66 TTCACTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAAAAAAGTTGATGATTTT
* * * *
89493 CTTTTGCATGGAAATCTTTCTTTGCCCAATTTTCTTTAAAATTAAATTTCCTCCCTTAAATAAGG
131 CTTTTGCATGGAAATCTTTCTTTGCCCAATTTTCCTTAAAATCAAAGTTACTCCCTTAAATAAGG
* **
89558 CAAGCATTGATTCTCGAAACAGTATCTACTCTTCTTAAGATTGGGAACATAAAACACATTCCTTT
196 CAAGCATTGATTCTCGAAACAGTATCTACTCTTCTTAAGATTAGGAACATAAAACACATTCCACT
* ** * * * *
89623 CATTAGGACACATGATATTGTTGCTTTGGCATTGCAAGGAAAGCATATCTTTCAACCGTTTTTGA
261 CATTAGGACACATGACATTGACGCTTTGG-ATTGCAAGAAAAGCATATATTTCAACCATATTTGA
* *
89688 TAGAATTAAGGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
325 TAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTA
* *
89753 GAGATTAGGCACCATAAACTTAGTCTTCTCCTAAGGATACATGATATTGATGCTTTGATTTCATA
390 GAGATTAGGCACCATAAACTTAGTCTTCTCCTAAGGATAAATGATATTGATGCTTTCATTTCATA
* * * *
89818 AGAAAAGCTTTCTTGCCTCCAATTTTTGTAAAGTCTAAGTTCGTGGCTCAATTGTGACAAACATG
455 AGAAAAGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
* * *
89883 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATAGTCCTCGTTAGGA
520 GATTCTAGCAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATACTCCTCGTTAAGA
* * *
89948 TAAATGACATTGATGATTTTCTCTTACATGGAAATCTTTTCTTTGCCCATTTTTCCCTAAAATCA
585 TAAATAACATTGATGATTTTCTCTTACATGGAAATCCTTTCTTTGCCCATTTCTCCCTAAAATCA
* * * *
90013 AAGTTCATCCGTTAAATAAGGCTAGCAATGACTCTCGTAACAATCTCCATTCTTTTCATGATTAG
650 AAGTTCATCCCTTAAATAAGGCAAGCAATGACTCTCGCAACAACCTCCATTCTTTTCATGATTAG
* * * *
90078 GAACCAGAAACATATTCCTTTCATTGGGATATATGACATTGATGCTTTGGTGTCGCAAGCAAAGC
715 GAACCAGAAACATATTCCTTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* ** * * *
90143 ATTTTTTTCAACTGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCTAAATAGTT
780 ATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTA
*
90208 ATAGTAATCCCTAAATATGAGAAAGGCATTCTTCCCAAT
845 ATACTAATCCCTAAATATGAGAAAGGCATTCTTCCCAAT
** * * *
90247 AATTTTTCTAAAGTCTAAGT-TCATGCCTCAACTGTGACAAATGTG-ATTCTAGTAGTGATCTTC
1 AATTTTTCTAAAGTCTAAGTCT-ATGCCTCAACTGTGACAAACATGCATTCTAGTAATAATCTTA
* * *
90310 ATTCACTTTGTGATTAGGCACTATAAACGCATTCTCCTCATTAGGATAAACAATA-TTGATGATT
65 ATTCACTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAA-AAAAGTTGATGATT
* *
90374 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTACTCCCTTAATTA
129 TTCTTTTGCATGGAAATC-TTTCTTTGCCCAATTTTCCTTAAAATCAAAGTTACTCCCTTAAATA
* * * * * *
90439 AGGCAAGCATTTATTCTCGAAATAGTCTCTATTCTT-TTCATGATTAGGAACCA-GAAACACATT
193 AGGCAAGCATTGATTCTCGAAACAGTATCTACTCTTCTT-AAGATTAGGAA-CATAAAACACATT
* * * * * *
90502 CCACTCATTATGATACATGACGTTGACGCTTTGG-TTTCATAAGAAAAGCGTTTATTTCAACCAT
256 CCACTCATTAGGACACATGACATTGACGCTTTGGATTGC--AAGAAAAGCATATATTTCAACCAT
* *
90566 ATTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAATATGAATAGTCATACTAATCCCTATT
319 ATTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* *
90631 CTTTTTAG-GATTAGGCACCATAAACTTAGTCTTCTCGTCAGGATAAATGATATTGATGCTTTCA
384 C-TTTTAGAGATTAGGCACCATAAACTTAGTCTTCTCCTAAGGATAAATGATATTGATGCTTTCA
** * * * *
90695 TTTTGTATGAAAGGCTTTCTTCCCACCAATTTTTGCCAAGTCTAAGTTCGTGCCTCAGTTGTGAC
448 TTTCATAAGAAAAGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAATTGTGAC
* * * *
90760 AAACGTGGATTCTGGCAGTGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTC
513 AAACATGGATTCTAGCAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATACTCCTC
* * * *
90825 GTTAAGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCCC-TATTCTCCT
578 GTTAAGATAAATAACATTGATGATTTTCTCTTACATGGAAATCCTTTCTTTGCCCAT-TTCTCCC
* * * * * * *
90889 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGCAATAGCCTCTATTTTTTTC
642 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAATGACTCTCGCAACAACCTCCATTCTTTTC
* * *
90954 ATGATTAGGAACCAGAAACACT-TTCCTTTCATTAGAATACATGAGATTGATGCTTTGGTGTTGT
707 ATGATTAGGAACCAGAAACA-TATTCCTTTCATTAGAATACATGACATTGATGCTTTGGTGTCGC
*
91018 AAGAAAAGCGTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
771 AAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
*
91083 TGAATAGTAATACTAATCCC
836 TAAATAGTAATACTAATCCC
91103 CATTCTTTTT
Statistics
Matches: 747, Mismatches: 99, Indels: 20
0.86 0.11 0.02
Matches are distributed among these distances:
882 3 0.00
883 93 0.12
884 643 0.86
885 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (883 bp):
AATTTTTCTAAAGTCTAAGTCTATGCCTCAACTGTGACAAACATGCATTCTAGTAATAATCTTAA
TTCACTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAAAAAAGTTGATGATTTT
CTTTTGCATGGAAATCTTTCTTTGCCCAATTTTCCTTAAAATCAAAGTTACTCCCTTAAATAAGG
CAAGCATTGATTCTCGAAACAGTATCTACTCTTCTTAAGATTAGGAACATAAAACACATTCCACT
CATTAGGACACATGACATTGACGCTTTGGATTGCAAGAAAAGCATATATTTCAACCATATTTGAT
AGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTAG
AGATTAGGCACCATAAACTTAGTCTTCTCCTAAGGATAAATGATATTGATGCTTTCATTTCATAA
GAAAAGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGG
ATTCTAGCAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATACTCCTCGTTAAGAT
AAATAACATTGATGATTTTCTCTTACATGGAAATCCTTTCTTTGCCCATTTCTCCCTAAAATCAA
AGTTCATCCCTTAAATAAGGCAAGCAATGACTCTCGCAACAACCTCCATTCTTTTCATGATTAGG
AACCAGAAACATATTCCTTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCA
TTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTAA
TACTAATCCCTAAATATGAGAAAGGCATTCTTCCCAAT
Found at i:91227 original size:476 final size:475
Alignment explanation
Indices: 90227--91215 Score: 1459
Period size: 476 Copynumber: 2.1 Consensus size: 475
90217 CCTAAATATG
* ** *
90227 AGAAAGGCATTCTTCCCAATAATTTTTCTAAAGTCTAAGTTCATGCCTCAACTGTGACAAATGTG
1 AGAAAGGCTTTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAACTGTGACAAACGTG
* * *
90292 ATTCTAGTAGTGATCTTCATTCACTTTGTGATTAGGCACTATAAACGCATTCTCCTCATTAGGAT
66 ATTCTAGCAGTGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGAT
* *
90357 AAACAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
131 AAACAATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCCCTATTCTCCTTAAAATCAA
* * *
90422 AGTTACTCCCTTAATTAAGGCAAGCATTTATTCTCGAAATAGTCTCTATTCTTTTCATGATTAGG
196 AGTTACTCCCTTAAATAAGGCAAGCATTGATTCTCGAAATAGCCTCTATTCTTTTCATGATTAGG
90487 AACCAGAAACACATTCCACTCATTATGATACATGACGTTGACGCTTTGGTTTCATAAGAAAAGCG
261 AACCAGAAACACATTCCACTCATTATGATACATGACGTTGACGCTTTGGTTTCATAAGAAAAGCG
* * *
90552 TTTATTTCAACCATATTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAATATGAATAGTCA
326 TTTATTTCAACCATATTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTAA
* ** * *
90617 TACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCGTCAGGATAAATGAT
391 TACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATAAACGAT
* *
90682 ATTGATGCTTTCATTTTGTA
456 ATTAATGCTTTCATTTAGTA
* * * **
90702 TGAAAGGCTTTCTTCCCACCAATTTTTGC-CAAGTCTAAGTTCGTGCCTCAGTTGTGACAAACGT
1 AGAAAGGCTTTCTTCCCACCAATTTTT-CTAAAGTCTAAGTTCATGCCTCAACTGTGACAAACGT
* *
90766 GGATTCTGGCAGTGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAAG
65 -GATTCTAGCAGTGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAG
*
90831 ATAAATAATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCCCTATTCTCCTTAAAATC
129 ATAAACAATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCCCTATTCTCCTTAAAATC
* * *
90896 AAAGTT-CATCCCTTAAATAAGGCAAGCATTGATTCTTGCAATAGCCTCTATTTTTTTCATGATT
194 AAAGTTAC-TCCCTTAAATAAGGCAAGCATTGATTCTCGAAATAGCCTCTATTCTTTTCATGATT
* ** * *
90960 AGGAACCAGAAACACTTTCCTTTCATTA-GAATACATGA-GATTGATGCTTTGGTGTT-GTAAGA
258 AGGAACCAGAAACACATTCCACTCATTATG-ATACATGACG-TTGACGCTTTGGT-TTCATAAGA
* *
91022 AAAGCGTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
320 AAAGCGTTTATTTCAACCATATTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
** *
91087 TAGTAATACTAATCCCCATTCTTTTTAGGATTAGGTGCCTTAAACTTAGTCTTCTAATAAGGATA
385 TAGTAATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATA
* *
91152 CACGATATTAATGCTTTGGA-TTAGTA
450 AACGATATTAATGCTTT-CATTTAGTA
*
91178 AGAAAGGCTTTCTTCCCTCCAATTTTTCTAAAGTCTAA
1 AGAAAGGCTTTCTTCCCACCAATTTTTCTAAAGTCTAA
91216 ATCCTTGCCT
Statistics
Matches: 458, Mismatches: 48, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
475 57 0.12
476 398 0.87
477 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
AGAAAGGCTTTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAACTGTGACAAACGTG
ATTCTAGCAGTGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGAT
AAACAATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCCCTATTCTCCTTAAAATCAA
AGTTACTCCCTTAAATAAGGCAAGCATTGATTCTCGAAATAGCCTCTATTCTTTTCATGATTAGG
AACCAGAAACACATTCCACTCATTATGATACATGACGTTGACGCTTTGGTTTCATAAGAAAAGCG
TTTATTTCAACCATATTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTAA
TACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATAAACGAT
ATTAATGCTTTCATTTAGTA
Found at i:91795 original size:21 final size:21
Alignment explanation
Indices: 91743--91803 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
91733 GCTTTGTATC
* *
91743 GATACATTGTATCAATACAT-
1 GATAAATTGTATCGATACATG
* *
91763 GTTCAA-TGTATCGATACATG
1 GATAAATTGTATCGATACATG
91783 GATAAATTGTATCGATACATG
1 GATAAATTGTATCGATACATG
91804 AAATTGGCAG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 12 0.36
20 7 0.21
21 14 0.42
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (21 bp):
GATAAATTGTATCGATACATG
Found at i:91871 original size:13 final size:13
Alignment explanation
Indices: 91855--91945 Score: 87
Period size: 13 Copynumber: 7.8 Consensus size: 13
91845 TGGTACAATA
91855 TATCGATACATTG
1 TATCGATACATTG
91868 TATCGATACATTG
1 TATCGATACATTG
91881 TATCG----A-TG
1 TATCGATACATTG
91889 TATCGATACATTG
1 TATCGATACATTG
91902 TATCGATACA-TG
1 TATCGATACATTG
* *
91914 -A---A-AAAATG
1 TATCGATACATTG
91922 TATCGATACATTG
1 TATCGATACATTG
91935 TATCGATACAT
1 TATCGATACAT
91946 GAAAAAATGT
Statistics
Matches: 64, Mismatches: 3, Indels: 22
0.72 0.03 0.25
Matches are distributed among these distances:
7 2 0.03
8 10 0.16
9 2 0.03
11 1 0.02
12 4 0.06
13 45 0.70
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:91878 original size:33 final size:33
Alignment explanation
Indices: 91855--91965 Score: 177
Period size: 33 Copynumber: 3.3 Consensus size: 33
91845 TGGTACAATA
* ***
91855 TATCGATACATTGTATCGATACATTGTATCGATG
1 TATCGATACATTGTATCGATACA-TGAAAAAATG
91889 TATCGATACATTGTATCGATACATGAAAAAATG
1 TATCGATACATTGTATCGATACATGAAAAAATG
91922 TATCGATACATTGTATCGATACATGAAAAAATG
1 TATCGATACATTGTATCGATACATGAAAAAATG
91955 TATCGATACAT
1 TATCGATACAT
91966 AGCTTGTAAC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
33 50 0.68
34 23 0.32
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (33 bp):
TATCGATACATTGTATCGATACATGAAAAAATG
Found at i:91892 original size:21 final size:21
Alignment explanation
Indices: 91866--91908 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
91856 ATCGATACAT
91866 TGTATCGATACATTGTATCGA
1 TGTATCGATACATTGTATCGA
91887 TGTATCGATACATTGTATCGA
1 TGTATCGATACATTGTATCGA
91908 T
1 T
91909 ACATGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTGTATCGA
Found at i:91925 original size:20 final size:20
Alignment explanation
Indices: 91900--91965 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
91890 ATCGATACAT
91900 TGTATCGATACATGAAAAAA
1 TGTATCGATACATGAAAAAA
91920 TGTATCGATACAT-------
1 TGTATCGATACATGAAAAAA
91933 TGTATCGATACATGAAAAAA
1 TGTATCGATACATGAAAAAA
91953 TGTATCGATACAT
1 TGTATCGATACAT
91966 AGCTTGTAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 13 0.33
20 26 0.67
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (20 bp):
TGTATCGATACATGAAAAAA
Found at i:99984 original size:18 final size:19
Alignment explanation
Indices: 99954--99992 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
99944 ATAAATTTTT
99954 TATAAAAAGGGGGAGAAGA
1 TATAAAAAGGGGGAGAAGA
99973 TATAAAAA-GGGGAGAAGA
1 TATAAAAAGGGGGAGAAGA
99991 TA
1 TA
99993 ATCATTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.54, C:0.00, G:0.33, T:0.13
Consensus pattern (19 bp):
TATAAAAAGGGGGAGAAGA
Found at i:100036 original size:35 final size:37
Alignment explanation
Indices: 99988--100062 Score: 109
Period size: 35 Copynumber: 2.1 Consensus size: 37
99978 AAAGGGGAGA
99988 AGATAATCATTTAAAGGGGAG-A-ATTTTTTAAGAGG
1 AGATAATCATTTAAAGGGGAGAATATTTTTTAAGAGG
* * *
100023 AGATAATCGTTTAAGGGGGAGAATATTTTTTAAGGGG
1 AGATAATCATTTAAAGGGGAGAATATTTTTTAAGAGG
100060 AGA
1 AGA
100063 AAAACAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
35 19 0.54
36 1 0.03
37 15 0.43
ACGTcount: A:0.37, C:0.03, G:0.29, T:0.31
Consensus pattern (37 bp):
AGATAATCATTTAAAGGGGAGAATATTTTTTAAGAGG
Found at i:100063 original size:18 final size:17
Alignment explanation
Indices: 100001--100062 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 17
99991 TAATCATTTA
100001 AAGGGGAGA-ATTTTTT
1 AAGGGGAGATATTTTTT
* **
100017 AAGAGGAGATAATCGTTT
1 AAGGGGAGAT-ATTTTTT
100035 AAGGGGGAGAATATTTTTT
1 AA-GGGGAG-ATATTTTTT
100054 AAGGGGAGA
1 AAGGGGAGA
100063 AAAACAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
16 8 0.22
17 1 0.03
18 13 0.36
19 12 0.33
20 2 0.06
ACGTcount: A:0.35, C:0.02, G:0.34, T:0.29
Consensus pattern (17 bp):
AAGGGGAGATATTTTTT
Found at i:100663 original size:21 final size:21
Alignment explanation
Indices: 100616--100671 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
100606 GTATCAATAC
***
100616 ATTGTATCGATACAT-GTTCA
1 ATTGTATCGATACATGGAAAA
100636 A-TGTATCGATACATGGAAAA
1 ATTGTATCGATACATGGAAAA
100656 ATTGTATCGATACATG
1 ATTGTATCGATACATG
100672 AAATTGGTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 13 0.42
20 4 0.13
21 14 0.45
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (21 bp):
ATTGTATCGATACATGGAAAA
Found at i:100790 original size:18 final size:18
Alignment explanation
Indices: 100767--100803 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
100757 ATCGATACAT
*
100767 AGCTTGTAATGGCTATAA
1 AGCTTGTAACGGCTATAA
100785 AGCTTGTAACGGCTATAA
1 AGCTTGTAACGGCTATAA
100803 A
1 A
100804 CGACTAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (18 bp):
AGCTTGTAACGGCTATAA
Found at i:103171 original size:476 final size:476
Alignment explanation
Indices: 102258--106611 Score: 4792
Period size: 476 Copynumber: 9.2 Consensus size: 476
102248 GCCTCCACTC
* * * * * *
102258 ATTGAGAACCAAAAAACATATTCCTTTCATCAGGATATATGACATTGACGCTTTGGTGTCACAAG
1 ATTGGGAACC-AAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAG
* * * *
102323 AAAAGCACTTT-TTTTAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTCAATAGGACAAACTTG
65 AAAAGCA-TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * * * * *
102387 GATAGTCATAATAATCCCCATTCTAATCT-GAATTAGGTACCTTAAACTTAGTCTTCTCATTAGG
129 AATAGTCATACTAATCCCCATTCT-TTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG
* * * * **
102451 ATACATGATATTGATGC-TTCGGTTTCGTATGAAAAGCTTTCTTCCCACCAATTTTTGCCAAGTC
193 ATACACGATATTAATGCTTTC-GTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
* * * **** * * *
102515 TAACTTC-GGTCTTCAATTGTGACAAACCCACATTCTAGCAGTGATCGTCATTCACTTTGTGATT
257 TAAGTTCATG-CCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATT
* * * * *
102579 AAGCACTATAAACATATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTCTTGCATGGAAA
321 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* *
102644 TCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGACTC
386 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
* * *
102709 TCGCAGCAGTCTCCATTTTTTTCATG
451 TCGTAACAGTCTCCATTCTTTTCATG
* * ** *
102735 ATTGGAAACCAAAAACACATTCCTTTCATTAGGACACATGACATTGACGCTTTGGTATTGCAAGA
1 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAGA
*
102800 AAAGCGTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
66 AAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * *
102865 TAGTAATACTAATCCCTATTCCTTTTAGGATTAGGCACCTTAAACTTAGTCTTCTCTTAAGGATA
131 TAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * *
102930 CACAATATTAATGCTTTCGTTTAGTAAGAAAGGCTTTCTTCCCACCAATTTTTTTAAAGTCTAAG
196 CACGATATTAATGCTTTCGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * *
102995 TCCCTGCCTCAATTGTGACAAACATGGATTTTAGTAATGATCTTCATTCACTTTGTGATTAGGCA
261 TTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCA
* * * *
103060 CTATAAACATATTCTCCTCATTAGGATAAATGATATTGAGGATTTTCTTTTACATGAAAATCTTT
326 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * * * * *
103125 TCTTTGTCCTATTTTCCTTAAAATCAATGTTCCTTCCTTCAATAAGGCAAGTAATGATTCTCATA
391 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTA
*
103190 ACAGTCTCCACTCTTTTCATG
456 ACAGTCTCCATTCTTTTCATG
* * * * * **
103211 ATTGGGAACAAAAAACACAATCCTTTCAATAGGATACATGACATAGACGCTTTGGCGTTACAAGA
1 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAGA
* * *
103276 AAAGCATTTCTTTCAACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAA
66 AAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * * * *
103341 TAATCATACTAATCCCCATTCTATTTAGGATTAAGCACCACAAACTTTGTCTTCTCGTAAAGATA
131 TAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* * * * *
103406 CGCGTTATTAATGC-TTCGGTTTCGTAGGAAAGGCTTTCTTCCCAACAATTTTTTTAAAGTCTAA
196 CACGATATTAATGCTTTC-GTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * *
103470 GTTCGTGCCTCAATTATGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGACTAGGC
260 GTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGC
* *
103535 ACTATAAACATATTCTCCTTC-TTAGGATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCT
325 ACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * * *
103599 TTTCTTTGCCTTA-ATTCTTTAAAATCAAAGTTTATCCCTTAAATATGGCAAGCATTGATTCTCA
389 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCG
* *
103663 TAACAGTCTCTATTCTTTTCATC
454 TAACAGTCTCCATTCTTTTCATG
* ** *
103686 ATTAGGAATGAAAAACACATTCCTTTCATTAGGATACATGACATT-ACGCTTTGGGGTCGTAAGA
1 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAGA
* * * * *
103750 AAAGCATTTCTTTCAATCC-TTTTTCATAAAAT-AAATGTTTGTCTCTTAAATAAGACAACCCTA
66 AAAGCATTTCTTTCAA-CCGTTTTTGATAGAATCAAA-GTTTGTCTCTTAAATAAGACAAACATG
* * * * *
103813 AAAAGTCATAATAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATATTCTTCTCATAAGTA
129 AATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGA
* * * * * * *
103878 TACACAATAATGAA-ACTTTTGTTTCATGAGAAAGGCTTTCTTCCCAACAATTTTTGTAAAGTCT
194 TACACGAT-ATTAATGCTTTCGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
*** * ** * *
103942 AAGTTCATGCCTCAATTAAAACAAACATCGATTCTAGTTGTGATCTTCATTCACATTGTGATTGG
258 AAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAG
* * * *
104007 GCACTATAAACACATTCTCCTAATTAGGGTAAATGACATTGATGATTTTCGTTTGCATGGAAATC
323 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * * * *
104072 ATTTCTTTGCCCTATTTTCCTAAAAATCAATGTTCCTCCCTTAAATAAGGTAGGCATTGATTCTC
388 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* * * *
104137 GAAATAGTTTCCACTCTTTTCATG
453 GTAACAGTCTCCATTCTTTTCATG
* * * * ** *
104161 ATTGGGAACCAGAAAA-ACATTCGTTTCATTAGGATACAAGACATTGACACTTTTGTTTCGTAAG
1 ATTGGGAACCA-AAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAG
** * * *
104225 AAAAGTGTTTTTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGA
65 AAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
*
104290 ATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCA-AAACATAGTCTTCTCATAAGGAT
130 ATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
* * * * * * * ** *
104354 ACAAGATATTGATGCTTTGGTTTTGTATGAAAGGCTTTCTTCCTACCACTTTTTGCCAAGTCCAA
195 ACACGATATTAATGCTTTCGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* ** * * * * *
104419 GTTCATGCCTTAGCTGTGACAAACGTGGATTCTAGTAGTGGTCTTCATTCACTTTGTGACTAGGT
260 GTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGC
* * * * * *
104484 ACTATAACCACAGTCTTCTCATTAAGATAAATGATATTGATGACTGTT-TTTTGCGTGGAAATCT
325 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCT
* * *
104548 TTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGGCAAGTATTGATTCTCG
389 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCG
* *
104613 AAACGGTCTCCATTCTTTTCATG
454 TAACAGTCTCCATTCTTTTCATG
* * * * * * * *
104636 ATTAGGAACCAGAAACACGTTCCTTTCTTTAGAATACATGACATTGATGCTTCGGGGTCGCAATA
1 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAGA
* * *
104701 AAAGTATTTCTTTC-ACCTGTTTTTTATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGA
66 AAAGCATTTCTTTCAACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * ** *
104765 ATAATTATACTAATCCCCATTCTTTTTAGGATTAGGTGCCATAAACTTAGTCTTCTAATAAGGAT
130 ATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
* * * * * *
104830 AAATGATATTAATGCTTTGGTTTTGTAAGAAAGACTTTCCTCCCACCAA-TTTT-T----T-T-A
195 ACACGATATTAATGCTTTCGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * *
104887 ----ATGTCTCAATTGTGACAAAC-TGGGATTCTAGTAATGATCTCCATTCACTTTTTGATTAGG
260 GTTCATGCCTCAATTGTGACAAACAT-GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGG
* * * * * *
104947 CACTATAAGCACGTTCTCCTCATTAGGATAAATGATATTAAGGATTTT-TTTTGCACGAAAATCT
324 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * *
105011 TTTATTTGCCCTATTTTCCTTAAAATCAATGTTCATTCCTTAAGTAAGGCAAGCATTGATTCTTG
389 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCG
*
105076 TAACAGTCTCTATTCTTTTCATG
454 TAACAGTCTCCATTCTTTTCATG
* * *
105099 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACAGTGATGCTTTGGGGTCACAAGA
1 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAGA
105164 AAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
66 AAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * *
105229 TAGTCATGCTAATCCCCATTCTTTTCT-GGATTAGGCACCGTAAATTTAGGCTTCTCGTAAGGAT
131 TAGTCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
* * * * * *
105293 ACACGATTTTTATGCTTTTG-TTCTGTAAGAAAGGCTTTCTTCCTACCAATTTTTCTAAAGACTA
195 ACACGATATTAATGCTTTCGTTTC-GTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
* * ** * * *
105357 AGTTCACGTCTCAATTGTGACGTACATGGATTCTACTAATAATCTTCATTCACTTGGTGATTAGG
259 AGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGG
* ** * * *
105422 CACTATAAACACATTCTCCTTATTAGGATAAATGATAGAGTTGATTTTCTTTTTCTTGGAAATCT
324 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* ** * * * * * *
105487 TTTCTGTGCATTATTTTCCTTAAAATTAAAGTTCATCCCTGAAATACGGTAACCATTAATTCTCG
389 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCG
* *
105552 TAACAGTCTCCATTCTTTTTATT
454 TAACAGTCTCCATTCTTTTCATG
* * * * * * * * * *
105575 ATTGGGAACCAAGAACACAGTCCTTTCACTAGGAAACA-CATTATTGACACTTCGCGGTCACAAG
1 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGA-CATTGACGCTTTGGGGTCGCAAG
* *
105639 AAAAGCATTTCTTTCGATCC-TTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATG
65 AAAAGCATTTCTTTC-AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* *
105703 AATAGTCATACTATTCCCCATTCTTTTTAGGATTAGGTACCATAAACTTAGTCTTCTCATAAGGA
129 AATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGA
* * * * *
105768 TACACGATATTGATGCTTTCGTTTCGTCAA-AAAGGCTTTCTGCACA-AAAGTTTTTGTAAAGTG
194 TACACGATATTAATGCTTTCGTTTCGT-AAGAAAGGCTTTCTTCCCACCAA-TTTTTGTAAAGTC
** * * * *
105831 TAAACTCATGCCTCATTTGTGACAACCATGGATTCTAGTAACGATCTTCATTCACTTTGTTATTA
257 TAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTA
* * * * * *
105896 GGCACTATAAATACATTCTCCTCATTAGGATAAATGATATAGTTGATTTTCTTTTTCTTGAAAAT
322 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* * * ** * *
105961 CTTATCTTTGCCCTATTTTCCTTAAAATTAAAGTTTATCCCCAAAATAGGGCAAGCATTGATTCA
387 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCT
* *
106026 CGTAA-TGATCTCCATTTTTTTCATG
452 CGTAACAG-TCTCCATTCTTTTCATG
* * ** * * ** *
106051 ATTTGGAACGAAAAACACATTATTTTCAATAGGATACATGACCTTGATTCTTTTGGGTCGCAAGA
1 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAGA
* * * * *
106116 AAAGCA-TTCTTTCTACCATTTTTGATAGAATCAAAATTTATCTATTAAATAAGACAAAACATGA
66 AAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AAACATGA
* * *** *
106180 ATAATCATACTAATCCCTATTCTTTTTAGGATTAGATGCCATAAACTTAGTCTACTCATAAGGAT
130 ATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT
* * * ** **
106245 ACACGATATTGATGCATTGGACTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAACACTAA
195 ACACGATATTAATGCTTTCGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * * * * *
106310 GTTCATGCCTTAATCGTGACCAACATGGATTCTAGTAATGATTTTCATTTAGTTTGTG--T----
260 GTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGC
* * * * *
106369 A-T-T---CTC-TTCT--TC---AGGATAAATGATATTGATGATTTTGTTTTTCTTGGAAATTTT
325 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * *
106423 TTTTTTGCCCTATTTACCTTAAAATCAAAATTCATCCTTTAAATAAGGCAAGCATTGATTCTC-T
390 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGT
* ** *
106487 AATAGTCTCTGTTCTTTTTC-TA
455 AACAGTCTCCATTC-TTTTCATG
* *** * * * *
106509 ATTGGCAACTGGAAACAAATT-CTGTT-AGTTAGGATATATGACATAGACGCTTTGGTGTCGCAA
1 ATTGGGAACCAAAAACACATTCCT-TTCA-TTAGGATACATGACATTGACGCTTTGGGGTCGCAA
* *
106572 GAAAAGCATTTCTTTCAACCATTTTTTATAGAATCAAAGT
64 GAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGT
106612 GTTAGGATCT
Statistics
Matches: 3262, Mismatches: 559, Indels: 130
0.83 0.14 0.03
Matches are distributed among these distances:
457 2 0.00
458 62 0.02
459 123 0.04
462 4 0.00
463 297 0.09
464 97 0.03
465 2 0.00
468 2 0.00
469 1 0.00
470 3 0.00
471 1 0.00
473 4 0.00
474 301 0.09
475 732 0.22
476 1603 0.49
477 28 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGGGTCGCAAGA
AAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
TAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
CACGATATTAATGCTTTCGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
TTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCA
CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTA
ACAGTCTCCATTCTTTTCATG
Found at i:108498 original size:220 final size:221
Alignment explanation
Indices: 108107--108538 Score: 821
Period size: 220 Copynumber: 2.0 Consensus size: 221
108097 GTCGAAGGCA
*
108107 CTATGGTTCCAAAAAGGGAAGAAGATTAGGATGAACAAGACACGAAGATGGCACAACTCAATGCT
1 CTATGGTTCCAAAAAGGGAAGAAGATTAGGATGAACAAGACACGAAGATGGCACAACTCAACGCT
*
108172 AAGGCAATGCACACGTTGTTTTGTGCTCTTGGCCTAAATGAGTACAATCGCGTGTCACTTTGCGA
66 AAGGCAATGCACACGTTGTTTTGTGCTCTTGGCCCAAATGAGTACAATCGCGTGTCACTTTGCGA
108237 CAACACCAAACAGATATGGGATAAGCTTGCAACGACGCATGAAGGGACTAATCAAGTCAAGGAGT
131 CAACACCAAACAGATATGGGATAAGCTTGCAACGACGCATGAAGGGACTAATCAAGTCAAGGAGT
108302 CCAAAATCAGCATGCTCTTGGCCCAT
196 CCAAAATCAGCATGCTCTTGGCCCAT
108328 CTATGGTT-CAAAAAGGGAAGAAGATTAGGATGAACAAGACACGAAGATGGCACAACTCAACGCT
1 CTATGGTTCCAAAAAGGGAAGAAGATTAGGATGAACAAGACACGAAGATGGCACAACTCAACGCT
108392 AAGGCAATGCACACGTTGTTTTGTGCTCTTGGCCCAAATGAGTACAATCGCGTGTCACTTTGCGA
66 AAGGCAATGCACACGTTGTTTTGTGCTCTTGGCCCAAATGAGTACAATCGCGTGTCACTTTGCGA
**
108457 CAATGCCAAACAGATATGGGATAAGCTTGCAACGACGCATGAAGGGACTAATCAAGTCAAGGAGT
131 CAACACCAAACAGATATGGGATAAGCTTGCAACGACGCATGAAGGGACTAATCAAGTCAAGGAGT
108522 CCAAAATCAGCATGCTC
196 CCAAAATCAGCATGCTC
108539 ACCCTCGACT
Statistics
Matches: 207, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
220 199 0.96
221 8 0.04
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (221 bp):
CTATGGTTCCAAAAAGGGAAGAAGATTAGGATGAACAAGACACGAAGATGGCACAACTCAACGCT
AAGGCAATGCACACGTTGTTTTGTGCTCTTGGCCCAAATGAGTACAATCGCGTGTCACTTTGCGA
CAACACCAAACAGATATGGGATAAGCTTGCAACGACGCATGAAGGGACTAATCAAGTCAAGGAGT
CCAAAATCAGCATGCTCTTGGCCCAT
Found at i:113206 original size:8 final size:8
Alignment explanation
Indices: 113193--113218 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
113183 ATTTGATTAA
113193 ATTTTGTG
1 ATTTTGTG
113201 ATTTTGTG
1 ATTTTGTG
113209 ATTTTGTG
1 ATTTTGTG
113217 AT
1 AT
113219 GAATGATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:113440 original size:13 final size:13
Alignment explanation
Indices: 113422--113459 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
113412 CAGCATTCTC
*
113422 TGTATCGATACAT
1 TGTATCGATACAG
*
113435 TGTATCGATATAG
1 TGTATCGATACAG
113448 TGTATCGATACA
1 TGTATCGATACA
113460 AAGGGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:115950 original size:13 final size:13
Alignment explanation
Indices: 115932--115956 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115922 ATATTGCACA
115932 GTATCGATACATT
1 GTATCGATACATT
115945 GTATCGATACAT
1 GTATCGATACAT
115957 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:116053 original size:13 final size:13
Alignment explanation
Indices: 116035--116093 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
116025 TACACACAAG
116035 ATGTATCGATACA
1 ATGTATCGATACA
116048 ATGTATCGATAC-
1 ATGTATCGATACA
* *
116060 A--T-CCCA-A-A
1 ATGTATCGATACA
116068 ATGTATCGATACA
1 ATGTATCGATACA
116081 ATGTATCGATACA
1 ATGTATCGATACA
116094 TCCCAAAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
8 2 0.06
9 2 0.06
10 2 0.06
11 2 0.06
12 2 0.06
13 26 0.72
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:116072 original size:20 final size:20
Alignment explanation
Indices: 116047--116110 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
116037 GTATCGATAC
116047 AATGTATCGATACATCCCAA
1 AATGTATCGATACATCCCAA
116067 AATGTATCGAT--A---C--
1 AATGTATCGATACATCCCAA
116080 AATGTATCGATACATCCCAA
1 AATGTATCGATACATCCCAA
*
116100 AATGTAACGAT
1 AATGTATCGAT
116111 GCATTGGCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 11 0.31
15 2 0.06
18 2 0.06
20 21 0.58
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (20 bp):
AATGTATCGATACATCCCAA
Found at i:116077 original size:33 final size:33
Alignment explanation
Indices: 116017--116110 Score: 154
Period size: 33 Copynumber: 2.9 Consensus size: 33
116007 CTTAACTATT
* *
116017 TGTATCGATACA-CACAAGATGTATCGATACAA
1 TGTATCGATACATCCCAAAATGTATCGATACAA
116049 TGTATCGATACATCCCAAAATGTATCGATACAA
1 TGTATCGATACATCCCAAAATGTATCGATACAA
*
116082 TGTATCGATACATCCCAAAATGTAACGAT
1 TGTATCGATACATCCCAAAATGTATCGAT
116111 GCATTGGCTT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 12 0.21
33 46 0.79
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (33 bp):
TGTATCGATACATCCCAAAATGTATCGATACAA
Found at i:117828 original size:475 final size:476
Alignment explanation
Indices: 116858--120054 Score: 3791
Period size: 475 Copynumber: 6.7 Consensus size: 476
116848 TGAGCTTTCA
* * * *
116858 CAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-GTTATCCTAATCCCCATTCTTTTTAAGATT
1 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
* * * * * * * *
116922 TGGCATCTTAAACTTAGTCTTCTCATAA-GATTACATGATATTGATGCTTTAGCTTCGTAAGAAA
66 AGGCACCATAAACTTAGTCTTCTAATAAGGA-TACACGATATTGATGCTTTGGTTTCATAAGAAA
* * * * * * * *
116986 -GCGTTTCTTCTCAACAATTTTCGTAAAGTCCAAGTCCATGCCTCAACTATGACAAATATGGATT
130 GGC-TTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATT
* * *
117050 CCAGTAATGATTTTTATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
194 CTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* * * * *
117115 TGATATTGTTGA-TTTCTTTTGCTTGGAAATCTTTTCTTTGCACTATTTTGCTCAAAATCAAAGT
259 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * * * *
117179 T-ATCCCTTAAATAAGGCATGCACTAATTCTCGTAATAGTCTCCACTCTTTTCATGATTGGGAAC
324 TCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAC
* * * * * * * * *
117243 CAAAAACGCATTGCTTTGATTAGGATACACGACACTGATGCTTTGGGGTCGTAAGTAAAGTATTT
389 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTT
* *
117308 CTTTAAAACCATTTTTGATAGAAT
454 CTTT-CAACCGTTTTTGATAGAAT
* * * * * * * * **
117332 CAAAGTTTGTCTTTTAAATAAGACAAACATAAATAATCAAACAAATCCCTATTATTCTCAAAATT
1 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
* * * * *
117397 TGGCACCATAAACTTAGTCTTCTAATAAAGATACACGATATTGAAGCGTT-GTTTCATAATAAAG
66 AGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAG
* * * * *
117461 GCTTTCTTCTGACCGATTTTTGCAAAGTCTATGTTCGTG-CTCAGTTGTGACAAACATGGATTCT
131 GCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCT
* * * *
117525 AGTAATAATCTTCATTAACCTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATG
196 AGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * * *
117590 ATATTGATGATTTTTTTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTAAAAATCAATGTT
261 ATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * *
117655 CATCCTTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCTCCACTCTTTTCAAAATTGGGAATC
325 CATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAACC
* *
117720 AAAAACACATTCTTTTCATTAGGATAAATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTTC
390 AAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTTC
* *
117785 TTTCAACTGTTTTTTATAGAAT
455 TTTCAACCGTTTTTGATAGAAT
** * * *
117807 CAAAGTTTGT-TGCAAAAATAAGACAAACATGAATGGTCATCCTAATACCCATTCTTTTCAGGAT
1 CAAAGTTTGTCT-CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGAT
* * * * * * *
117871 TTGGCATCTTAAACTTAGTTTTCTCATAAGGATACATGATATTGATACTTTGGTTTCATAAGAAA
65 TAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAA
* * * *
117936 AGCTTTCTTCCCAACAATTTTTGTAAAGTCTAAGCTCGTGCCTCAATAT-TGACAAACATGGATT
130 GGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAT-TGTGACAAACATGGATT
* ** * *
118000 CTAGTAATGATCTTCATTCACCTTGTGATTAGGCACTATAAACTTATTCTCGTCATTAAGATAAA
194 CTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* * *
118065 TGATATTGATGGTTTTCTATTGCATGAAAATC-TTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
259 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * * * * * *
118129 TCATCACTTAAATAAGGCAAGCGTTTATTCTCATAACAGTCTCCATTCTTTTCATGTTTGGGAAC
324 TCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAC
* * * *
118194 CAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTCGGTGTTGCAATAAAAGCATTT
389 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTT
*
118259 TTTTCAACCGTTTTTGATAGAAT
454 CTTTCAACCGTTTTTGATAGAAT
* * * *
118282 TAGAGTTTGTCTTTTAAATAAGACAAACATGAATAGTCATAC-AAACCCACATTCTTTTCAGGAT
1 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC-CATTCTTTTCAGGAT
* * ** * ** *
118346 TAGGTACGATAAACTTAG-CTTCTTTTAAGGATATAAAATATTGATGCTTTGGTTTCAAAAGAAA
65 TAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAA
* * * *
118410 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCAT-AATTGTGACAAACATGTAGT
130 GGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCC-TCAATTGTGACAAACATGGATT
* * * *
118474 CTACTAATGATCTTCATTCACGTTGTGATTAGGCACTATAAACACATTCCCCTCATTGGGATAAA
194 CTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
*
118539 TGATATTGATAATTTTCTTTTGCAT-GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
259 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * ** * * *
118603 TCA-CCCTTTAATAAAGGTAAGCATTGATTCTCGCGACAATCTCCACTCCTCTCAAGATTGGGAA
324 TCATCCCTTAAAT-AAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAA
* * * * * *
118667 CCAGAAACACATTCTTTTCGTTAGGATACATGACGTTG-TCACATTGGTGTCGCAAGAAAAGCAT
388 CCAAAAACACATTCCTTTCATTAGGATACATGACATTGAT-GCTTTGGTGTCGCAAGAAAAGCAT
* *
118731 TTCTTTCAACCTTTTTTTATAGAAT
452 TTCTTTCAACCGTTTTTGATAGAAT
* ** * *
118756 CAAAGTTTGTTTCTTAAATAAGGTAAACATGAATTGTCATACTAATCCCCAATCTTCTTC-GGAT
1 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT-TTCAGGAT
* * * * *
118820 TAGACACCATAAACTTAGTCTTCTGATAAGGATACACAATATTGATGCTTTGGATTCGTAAGAAA
65 TAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAA
*** ** * * *
118885 GGCTTTCTTCTCAATTATTTTTGTAAAGTCTAAGTTAATGCCTCAATTGTAACAAAAATTGATTC
130 GGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTC
* * * * *
118950 TAGTAATGATCTTCATTCACTTTGTGATTAAGCACTACAAATATATTCTCCTCTTTAGGATAAAT
195 TAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * *
119015 GCA-ATTGATGATTTACTTTTCCATGTAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
260 G-ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * * * * *
119079 TC-TACCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTTTTTTCATGATTCGGAG
324 TCAT-CCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAA
** ** * ***
119143 CCAAAAACACATTCCTTTCAGCAGGATACATGACATTGACAC-TTGGTATAAAAAGAAAAGCATT
388 CCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATT
* * *
119207 TTTTTCAACTGTTTTTGATAAAAT
453 TCTTTCAACCGTTTTTGATAGAAT
* * * * * *
119231 CAAAGTTTATCTCCTATATAAAACAAGCATGAATAGTCATACTAATCCCCATTCTTTTTAGGATT
1 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
* * *
119296 AGGCACCATAAACTTAATCTTTTAATAAGGATACACCATATTGATGCTTTGGTTTCATAAGAAAG
66 AGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAG
* * *
119361 G-TTGTTTTCT-AGCCAATTTTTGCAAAGTCTAAGTTCGTGCCT-AAGTTGTGACAAACGTGGAT
131 GCTT-TCTTCTCA-CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGAT
* * *
119423 TCAAGTAATGCTCTTCATTCTCTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
193 TCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
* * * *
119488 ATGATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCATAAAATTAAAG
258 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
* * * *
119552 TTCATCCCTTAAATAAGGCAACCATTGATTCTTGTAACTGTCTCTACTCTTTTCAAGATTGGGAA
323 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAA
* * * * *
119617 CCAAAAAATACATTCCTTTCATTAGGATATATGGCATTGACGCTTTGGTGTTGCAAGAAAAGCAT
388 CC-AAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCAT
* ** *
119682 TTCCTTCAACCACTTTTGATAAAAT
452 TTCTTTCAACCGTTTTTGATAGAAT
* * * *
119707 CAAAGTTTGACTCTTATATAAGACAAAAATGAATTGTCATACTAATCCCCATTCTTTTCAGGATT
1 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
* * **
119772 AGGCACCTTAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTCAGTTTCGA-AAGAAA
66 AGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTC-ATAAGAAA
** * * *
119836 GGCTTTCTTCAGACCAATTTGTGTAAAGTCTAAGTTTGTGCC-CTAATTGTGACAACCATGGATT
130 GGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC-AATTGTGACAAACATGGATT
** * *
119900 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCATTATAAACACATTCTCCTCGTTAGGATAAA
194 CTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* * * * * *
119965 TGATATTGACGATTTTCCTTTGCATGAAAATTTTTTCTTAGCCCTATTTTCCTTAAAATCAAATT
259 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
120030 TCATCCCTTAAATAAGGCAAGCATT
324 TCATCCCTTAAATAAGGCAAGCATT
120055 CAAATTTCCT
Statistics
Matches: 2305, Mismatches: 378, Indels: 77
0.84 0.14 0.03
Matches are distributed among these distances:
473 102 0.04
474 562 0.24
475 907 0.39
476 563 0.24
477 170 0.07
478 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
AGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAG
GCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCT
AGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
ATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAACCA
AAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCT
TTCAACCGTTTTTGATAGAAT
Found at i:122495 original size:476 final size:476
Alignment explanation
Indices: 120060--125447 Score: 6196
Period size: 476 Copynumber: 11.3 Consensus size: 476
120050 GCATTCAAAT
* * * * * *
120060 TTCCTTTCGTTAAGG-TACATGACGTTGCCGCTTTGGTGTCGCAGGAAAAGCATTT-TTTCATCC
1 TTCCTTTCATT-AGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACC
* * * * *
120123 GTTTTTGATA-AATTCAACGTTTGTCTCTCAAGA-AAGGCAAACAAGAATAATCATACTAATCCC
65 GTTTTTGATAGAA-TCAAAGTTTGTCTCTTAA-ATAAGACAAACATGAATAGTCATACTAATCCC
* * * * *
120186 CATTCTTTGCAGGATTAGGCACCATAAA-TATAGTCTTCTAATAAGGATACATGACATTAAAGCT
128 CATTCTTTTCAGGATTAGGCACCATAAACT-TAGTCTTCTAATAAGGATACACGATATTGATGCT
** *
120250 TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAATTA
192 TTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTG
* * *
120315 TGACAAACACGGATTCTAGTAATGATCTTCATTC-CTTTTGTG-TTGAGGTACTATAAAGACATT
257 TGACAAACATGGATTCTAGTAATGATCTTCATTCAC-TTTGTGATT-AGGCACTATAAACACATT
* * *
120378 CTCCTCGTTAGGATAAATGATATTGATGATTTT-GTTTGCATGGAAATCTTTTCTTTGTCCTATT
320 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
** * * * * * *
120442 TTCCACAAAATTAAACTTCATCCCTTAAATAAGGCAACCATTGATTCTTGTAACTGTCTCTACTC
385 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTC
* * *
120507 ATTTCAAGATTGGGAACCAAAAAAAACA
450 TTTTCATGATTGGGAACC-AAAAACACA
* * * * *
120535 TTCCTTTCATTAGGATATATGACATTGATGCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCA
1 TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCG
* * * * *
120600 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACAGTATTACCCAT
66 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* *
120665 TCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATG-TTTCT
131 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTT-G
* * ** * * * **
120729 GTTCCATAAGAAAAGCTTTCCCCCCCCCCCCCAATTTTTGCAAAGTCTAAG-CCTGTGAGTCAAT
195 GTTTCATAAGAAAGGCTTT----CTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAAT
*
120793 TGTGACAAACATGGATTCTAGTAATGATCTTAATTCACTTTGTGATTAGGCA-TGATAAACACAT
255 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACT-ATAAACACAT
* * *
120857 TCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTACATGGAAATC-TTTCTTTGCCCCAT
319 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * *
120921 TTTCTTTAAAATTTAAAGTTCATCCCTTAAATAAGGCAAGCACTGATTCTCGAAATAGTCTCTAT
384 TTTCCTTAAAA-TCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTAT
* *
120986 T-TTTCTCAAGATAGGGAACCAAAAACACA
448 TCTTT-TCATGATTGGGAACCAAAAACACA
* *
121015 TTCCTTTCATTAGGATACATGACATTGTCGCTTTGGTGTCACAAGGAAAGCATTTCATTT-AACC
1 TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTC-TTTCAACC
** *
121079 GTTTTTGATAGAATCATGGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCA
65 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * *
121144 TTCTTTTTAGGATTAGGCTCCACAAACTTAGTCTTC-ACATTAGGATACACGATATTGATGCTTT
130 TTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTA-ATAAGGATACACGATATTGATGCTTT
** * ** * *
121208 GGTTTTGTAAGAAAAGCTTTCCCCCCCCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATT
194 GGTTTCATAAGAAAGGCTTT---CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATT
121273 GTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATAT
256 GTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACAT-T
* *
121338 -TCCTCATTAGGATAAATGATATTGATGATTTT-TTCTTGTATGGAAATCTTTTCTTTGCCCTTT
320 CTCCTCATTAGGATAAATGATATTGATGATTTTCTT-TTGCATGGAAATCTTTTCTTTGCCCTAT
* * * *
121401 TTTCCTTAAAATCAAAGTTCATCCCATAAATAATGCAAGCATTGATTCTTGTAACAATCTCTATT
384 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATT
* * ***
121466 CTTTACATGATTGGGAACCAGAAATGTA
449 CTTTTCATGATTGGGAACCAAAAACACA
* * * * *
121494 TTCCTTTCATTGGGATACATGACATTGATGGTTTGGTGTCACAAGCAAAGCATTTCTTTCAATCG
1 TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCG
* ** * * * * *
121559 TTTTTGATAAAATCAAAGTTTGTCTCACAAATAAGACAAACCTAAATAATCCTAGTAATCCCCAT
66 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * *
121624 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTTTAATAAGGATACATGATATTAATACTTTGG
131 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGG
** * *
121689 TTTTGTAAGAAAGGCTTTCTTCCTACCAATTTTT-TGAAAGTCTAAGTTCGTACCTCAATTGTGA
196 TTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGT-AAAGTCTAAGTTCGTGCCTCAATTGTGA
* * * * * ** * * *
121753 AAAACATGGATTCCAATAATGTTCTCCATTCACTTTGTGAAAAGGTAATATAAACATATTCTCCT
260 CAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCT
* * * * * * *
121818 TATTAAGATAAATAATATTGAAGCATTTTCTTTTGCATGGAAATCTTCTGTTTACCCTATTTTCC
325 CATTAGGATAAATGATATTGATG-ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* * * * * * *
121883 TTAAAATCAAAATTCATCCATTAAATAAGGCAACCACTGATTCTCGTAACAATCTCCATTCTTTC
389 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTCTTTT
* *
121948 CATGATTAGGAACCAGAAACACA
454 CATGATTGGGAACCAAAAACACA
* * * * ** * ** **
121971 TTCCTTTCATTAGCATACAAGACATTGTCACTTTGGTGTCGTAAGAAAAGCATTTATTTTGATAG
1 TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCG
* * **
122036 TTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATACTC-TCACTAATCCTTA
66 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT-ACTAATCCCCA
* * **
122100 TTCTTTACAAGATTAGGCACCATAAACTTAGTCTTCTAATAATTATACACGATATTGATGCTTTG
130 TTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTG
* * * **
122165 G-ATCATAAGAGAA-GCTTTCTTCCCACCAATTTTTGCAAAGTCTAATTTCGTGCCTCGGTTGTG
195 GTTTCATAAGA-AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTG
* * * * * * *
122228 ACAAACATGGATTCTAGTAATGATCATCATTGATTTTGTGTTTACGCACAATAAACACATTATCC
259 ACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCC
* * ** * *
122293 TCATTAGGATAAATGATATGGATGATTTTCTTCTGCATGTTAACCTTTTCTTTGCCCTACTTTCC
324 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* * * ** * *
122358 TAAAAATCGATGTTCATCTTTTAAATAAGGCAAGCATTGATTCTCGTAAGAGTCTCCATTCTTTT
389 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTCTTTT
* *
122423 CAAGATTGGGAACTAAAAAACACA
454 CATGATTGGGAAC-CAAAAACACA
* * **
122447 TTCTTTTCATTAGGATATATGACATTGACGCTTTAGG-GTTGCAAGAAAAGCATTTCTTTCAACC
1 TTCCTTTCATTAGGATACATGACATTGACGCTTT-GGTGTCACAAGAAAAGCATTTCTTTCAACC
* *
122511 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAATAATCATACTAATCCCCA
65 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* ** * * * *
122576 TTCTTTTTAGGATTAGGCATGATGAACTTAGTCTTCTAATAAGGATACACAATATTGAAGCCTTG
130 TTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTG
* * * * *
122641 GTTTCATACGAAAGGCTTTCTTCCCACCAACTTTTGTAAAGCCTAAGTT-ATGCCTCAATTGTAA
195 GTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGA
* * * * *
122705 CAAACGTGGATTCTAGTAATGATCTTCATTGATTTTGTGATTAGGCACTATAAACAAATTCTTCT
260 CAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCT
* *
122770 CATTAGGATAAATGATATGGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCT
325 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* * * * *
122835 TAAAA-CTAATGTTCAT-CCTTAAATAAGGCAAGCTTTTATTCTCGAAACAGT-TGCCATTCTTT
390 TAAAATC-AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCT-CTATTCTTT
122897 TCATGATTGGGAACCAAAAACACA
453 TCATGATTGGGAACCAAAAACACA
* * * * * * *
122921 TTCCTTTCATTAGTATACATGACATTGATGCTTTGGGGTCGCAAAAAAAACATTTCTTTCAACAG
1 TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCG
* * * * * * *
122986 TGTTTGATAGAATTAAAGTTTGTCTCTTCAACAAGACAAACATGAATAATCATACTAATCCCTAA
66 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* *
123051 TCGTTTC-GAGATTAGGCACCATAAACTTAGTCTTCTAA-AAGGGATACACGATGTTGATGCTTT
131 TCTTTTCAG-GATTAGGCACCATAAACTTAGTCTTCTAATAA-GGATACACGATATTGATGCTTT
* * *
123114 GGTTTCTTAAGAAAAGCTTT-TTCCCCCCAATTTTTGTAAAGTCTAAG-TCTGTGCCTCAATTGT
194 GGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAATTGT
** * *
123177 GACAAACATATATTCTAGTAATAATCTTAATTCACTTTGTGATTAGGCACTATAAACACATTCTC
258 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTC
* * * *
123242 CTCATTAGGATAAATGATATTGATGATTTACTTTTGCATAGAAATC-TTACTTTGCCCTATTTTA
323 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * * * * * *
123306 TTTAAAATTAAAGTTCATCCCTTAAATATGGTAAGCATTGATTCTCGTAATAGTCTCCACTCTTC
388 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTCTTT
* *
123371 TCAAGATTGGGAACCAGAAACACA
453 TCATGATTGGGAACCAAAAACACA
** * * * * *
123395 TTTTTTTTCATTGGGATATATGACGTTGTCGCTTTGGTGTCACAAGAAAAGCATTTCTCTCAACC
1 -TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACC
* * * *
123460 GTTTTTGATAGAATCAAGGTTTGTCTCTTAAATAAGACAAGCATGAATAGTTATAGTAATCCCCA
65 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * ** * *
123525 TTCGTTTCAGGATTGGGCATCATAAAGATAGTCTTGTAATAGGGATACACGATATTGATGCTTTG
130 TTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTG
* * * * *
123590 GCCTT-GTAAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAGTGT-GTGCCTCAATTTT
195 G-TTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT-TCGTGCCTCAATTGT
* * * ** * *
123653 GACAAACAAGGATTCTAGTAAAGATCTTCATTGACTTCATGATTACGCACTATAAACACATACTC
258 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTC
* * * * *
123718 CTCATTAGGATAAATAATATTGATGATTTTCTCTTGCATGAAAATCTTTTCTTAGCCATATTTTC
323 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
** ** * * *
123783 CCAAAAATCAATTTTCATCCTTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCT-TTCTT
388 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCT-CTATTCTT
* * **
123847 TTCATGATTGAGAATCGGAAACACA
452 TTCATGATTGGGAACCAAAAACACA
* * *
123872 TTCAC-TTCATTAGGATACAAGACATTGACACTTTGGTGTCACAAAAAAAGCATTTCTTTCAACC
1 TTC-CTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACC
* * * *
123936 GTTTTTGATTGAATCAAAGTTTATC-CTTTAAATAAAACAAACATGAATAGTCATAGTAATCCCC
65 GTTTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* * * * *
124000 ATTCATTTCAGAATTAGGCACCATAAACTTAGTATTCTAATAAGGATACATGATATTGATGCCTT
129 ATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTT
** * * * *
124065 GGTTTTGTAAGAAAAGCTTT-TTCCCCCCAATTTTTGTAAAGTCTAAG-TCTGTACCCCAATTGT
194 GGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAATTGT
** *
124128 GACAATTATGGATTCTAGTAATGATCTTAATTCACTTTGTGATTAGGCA-TGAT--ACACATTCT
258 GACAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACT-ATAAACACATTCT
*
124190 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT-TTTTCTTTGCCCTATTTT
322 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
124254 CTTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAG-AGTTAATTCTCG-AAGCAATGTTTACTC
387 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCA-TTGATTCTCGTAA-CAGTCTCTATTC
* ** *
124317 TTTTCAAGATTGGGTGCCAAAAACGCA
450 TTTTCATGATTGGGAACCAAAAACACA
* * * * * * * *
124344 TTCCATTCATTAGGATACATGACGTTGTCGCTTTGGAGTCATAAGGAAAGCATTTTTTTCAACCA
1 TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCG
* * *
124409 TTTTTGATAGAATCAAGGTTTGTCTCTTAAATAAGATAAAAATGAATAGT--TACTAATCCCCAT
66 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * * *
124472 GCTTTTCAGGATTAGGCACCA-AATACTTAGTCCTCTCATAAGGAAACACGATATTGATGCGTTG
131 TCTTTTCAGGATTAGGCACCATAA-ACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTG
* * *
124536 GTTTCATAAGAAAGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTAATTTTGA
195 GTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGA
*
124601 CAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATACTCCT
260 CAAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCT
* * * *
124666 CATTAGGATAAATGATATTGATGATTTTCTTTTACATGGAAATCATTTCTTTGCCTTTTTTTCCT
325 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* * * * *
124731 TAAGATCAAAGTTCATCCCTTAAATATGGCTAGCATTGATTCTCATAACAGTCTCTATTTTTTTC
390 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTCTTTTC
* **
124796 ATGATTGGGAACCATAAACGTA
455 ATGATTGGGAACCAAAAACACA
* * ** *
124818 TTCCTTTCATTAGGATACATGACATTAATGCTTTGGTGTTGCAAGAAAAGTATTTCTTTCAACCG
1 TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCG
* * * * * * *
124883 -TTTT--T-G-AT--AAGTTTGCCTCTCAAATAAGTCAAACCTAAATAGTCATAGTAATCCCCTT
66 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * *
124941 TCTTTTTAGGATTAGGCGCCATAAACTTAGTCTTCTAAAAAGGATACACGATATTAATGCTTTGG
131 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGG
* * * * *
125006 TTTTATAAGAAAGGCTTTCTTCCCAACAA-TTTTGTAAAGTCTAAGCTCATGCCTCAATTATGAC
196 TTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGAC
* * * *
125070 AAACATGGATTCTAGTAATGATCTTTATTCACTTTCTGATTAGGCACTATAAACAGATTTCTCTT
261 AAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACA-TTCTCCT
* * * * *
125135 TATTAAGATGAAGGATATTGATAATTTTCTTTT-CATGGAAATCTTTTCTTTAG-CCTATTTTCC
325 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-GCCCTATTTTCC
** * *
125198 TTAAAATCAAAGTTTTTCCCTTAAATAAGGCAACCATTGATTCTCGTAACAGTCTCTATTATTTT
389 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTCTTTT
*
125263 CATGATTGGGAACCAAAAACATA
454 CATGATTGGGAACCAAAAACACA
* * * * * * * *
125286 TTCGTTTTATTAAGATACATGACATTGAC-ATATTGAG-GTTACAAGTAAATCATTTCTTTCATC
1 TTCCTTTCATTAGGATACATGACATTGACGCT-TTG-GTGTCACAAGAAAAGCATTTCTTTCAAC
* * * * *
125349 TGTTTTTGATAGAATGAAAGTTTGTCTCTTAAATAAGACAAACATAAATAATCATAATAATCCCC
64 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
125414 ATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
129 ATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
125448 CTATCATAAG
Statistics
Matches: 4151, Mismatches: 669, Indels: 186
0.83 0.13 0.04
Matches are distributed among these distances:
467 28 0.01
468 237 0.06
469 133 0.03
470 83 0.02
471 89 0.02
472 177 0.04
473 170 0.04
474 495 0.12
475 528 0.13
476 977 0.24
477 399 0.10
478 9 0.00
479 388 0.09
480 356 0.09
481 82 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTCAACCG
TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGG
TTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGAC
AAACATGGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTC
ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
AAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTCTTTTCA
TGATTGGGAACCAAAAACACA
Found at i:126339 original size:475 final size:474
Alignment explanation
Indices: 125451--126801 Score: 1713
Period size: 475 Copynumber: 2.9 Consensus size: 474
125441 CTTAGTCCTA
* * * * * *** *
125451 TCATAAGAAAGGCTTTCTTCCCACCAATTTTTTTAAAGCCTAAGTTCATAAGTCAATTGTAACAA
1 TCATAAGAAAAGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAA
* *
125516 ACATGAATTCTAGTAATGATCTTCACTCACTTTGTAATTAGGCACTATAAACACA-T-T-CTCAT
66 ACATGAATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* * * *
125578 TA-GAAAAAATGATATGGATGATTTTCTTTTGAATGTAAATCTTTTCTTTGCCCTATTTTC-CTA
131 TAGGATAAAA-GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTCTA
* ** * *
125641 AAAATCGATGTTCATCCTTTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTC-CT-TTCTCAT
195 AAATTAAAT-TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCACTCTTCTCAT
*** * * * * *
125704 GAACGGGAACCAAAAACACATTCCTTTCATTAAGATATAAGACATTAGC-CCTTCGGTGTCGCAA
259 GATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATT-GCTGCTTTGGTGTCGCAA
* *
125768 GAAAAGTACTTCTTTTAACCGTTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
323 GAAAAGTA-TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
125833 AATTGTCACAATAATACCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAAGA
387 AATAGTCATAATAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAAGA
125898 TACATGATATTGATGCTTTGG-T
452 TACATGATATTGATGCTTTGGTT
* *
125920 TCTGTAAGAAAAGCTTT-TTCCCTCCCAATTTTTGTAAAGTCTAAG-TCTGTGCCTCTATTGTGA
1 TC-ATAAGAAAAGCTTTCTTCCCT-CCAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAATTGTGA
* * * *
125983 CAAACATGCATTCTAGTAATAATCTTAATTCACTTTGTGATTAGGCACGATAAACACATTCTCCT
63 CAAACATGAATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCT
*
126048 CATTAGGATAAAAGA-AGTTGATGATTTTCTTTTGCATGGAAATC-TTTCTTTGCCCAATTTTCT
128 CATTAGGATAAAAGATA-TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCT
* *
126111 TTAAAATTAAATTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGAAACAGTCTCTACTCTTCT
192 CTAAAATTAAATTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTC-ACTCTTCT
* * * * *
126176 CAAGATTAGGAACAAAAAACACATTCCTTTCATTAGGACACATGACATTGCTGCTTTGGCGTTGC
256 CATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGCTGCTTTGGTGTCGC
* * * * *
126241 AAGGAAAGCATATCTTTCAACCGTTTTTGATAGAATTAAGGCTTGTCTCTTAAATAAGACAAACA
321 AAGAAAAGTAT-TCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * ** *
126306 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGTCACCATAAACTTAGTTTTCTCCTAAG
385 TGAATAGTCATAATAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAA
126371 GATACATGATATTGATGCTTTGGTT
450 GATACATGATATTGATGCTTTGGTT
* *
126396 TCATAAGAAAAGCTTTCTTGCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTTTGACAA
1 TCATAAGAAAAGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAA
* * *
126461 ACATGGATTCTAGTAATGATTTTCATTCACTTTGTGATTAGGCACTATAAACACATACTCCTCAT
66 ACATGAATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* * * *
126526 TAGGATAAATGATATTGATGATTTTCTCTTACATGGAAATCTTTTCTTTGCCCTTTTTTCTCTAA
131 TAGGATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTCTAA
* * * * * * *
126591 GATCAAAGTTCATCCCTTAAATAAGGCTAGCAATGATTCTCGTAACAGTCTCCATTCTTTTCATG
196 AATTAAATTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCT-CACTCTTCTCATG
* * * * **
126656 ATTAGGAACCAGAAACATATTCCTCTT-ATTGGGATACATGACACTAATGCTTTGGTGTCGCAAG
260 ATTAGGAACCAAAAACACATTCCT-TTCATTAGGATACATGACATTGCTGCTTTGGTGTCGCAAG
* * * *
126720 AAAAGTATTTTTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCTAA
324 AAAAGTA-TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* *
126785 ATAGTTATAGTAATCCC
388 ATAGTCATAATAATCCC
126802 TAAATATGAG
Statistics
Matches: 756, Mismatches: 104, Indels: 37
0.84 0.12 0.04
Matches are distributed among these distances:
469 9 0.01
470 92 0.12
471 1 0.00
472 60 0.08
473 41 0.05
474 11 0.01
475 333 0.44
476 205 0.27
477 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (474 bp):
TCATAAGAAAAGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAA
ACATGAATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
TAGGATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTCTAA
AATTAAATTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCACTCTTCTCATGA
TTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGCTGCTTTGGTGTCGCAAGAA
AAGTATTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
GTCATAATAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTAATAAAGATACA
TGATATTGATGCTTTGGTT
Found at i:127701 original size:475 final size:476
Alignment explanation
Indices: 126810--133989 Score: 6828
Period size: 475 Copynumber: 15.1 Consensus size: 476
126800 CCTAAATATG
* ** * * *
126810 AGAAAGGCATTCTTCCCAATAATTTTTCTAAAGTCTAAGTTCATGCCTCAACTGTGACAAACGTG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
*
126875 GATTCTAGTAGTGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
66 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * *
126940 TAAACGATATTGATGATTTTCTTTTGCATGAAAATATTTTCTTCGCCCTATTTTCCTTAAAATCA
131 TAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * *
127005 AAGTTCCTCCCTTAAATAA-GCAAGCATTTATTCTCGAAACAGTCTCCATTCTTTTCATGATTAG
195 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGG
* ** * * * *
127069 GAACC-AGAAACACGTTCCACTCATTATGATACATGACGTTGATGCTTTGGTTTCGTAAGAAAAG
260 GAACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * *
127133 CGTTTATTTCAACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGT
325 CATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * * * *
127198 CATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACTTAGCCTTCTAAAAAGGATAAATG
390 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACG
* *
127263 ATATTGATGCTTTCGTTTTGTA
455 ATATTGATGCTTTGGTTTCGTA
* ** * * *
127285 TGAAAGGCTTTCTTCCCACCAATTTTTGCCAAGTCTAAGTTCGTGCCTCAGTTGTGACAAACGTG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
* * ** * *
127350 GATTCTGGCAGGGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAAGA
66 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* *
127415 TAAATGATATTGATGATTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTCTCCTTAAAATCAA
131 TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
127480 AGTTCATCCCTTAAATATGGCAAGCATTGATTCTCGTAACAGCCTCCATTCTTTTCATGATTAGG
196 AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
* * * * * *
127545 AA-CAAGAAACACTTTGCTTTCATTAGAATACATGAGATTGACGCTTTGGTGTTGCAAGAAAAGC
261 AACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * *
127609 GTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAACAAGACAAACATGAATAGTA
326 ATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
** * *
127674 ATACTAATCCCCATTCTTTTTAGGATTAGGCGTC-TGAAACTTAGTCTTTTAATAAGGATACACG
391 ATACTAATCCCCATTCTTTTTAGGATTAGGCACCAT-AAACTTAGTCTTCTCATAAGGATACACG
* * *
127738 ATATTAATGCTTTGGATTAGTA
455 ATATTGATGCTTTGGTTTCGTA
* * * * * **
127760 AGAAAGGCTTTCTTACCTCCAATTTTTTTAAAGTCTAAGTCCGTGCCTCAATTGCAACAAACATG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
* *
127825 GATTTTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGA
66 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * *
127890 TAAATGATATTGAGGATTTTTTTTTGCAT-GATAAACTGTTCTTTGCCCTATTTT-CTATAAAAT
131 TAAATGATATTGATGA-TTTTTTTTGCATGGA-AATCTTTTCTTTGCCCTATTTTCCT-TAAAAT
** * * * * *
127953 TGATGTTCATTCCATAAATAAGGCAAGCATTGATTCTTC-TAACAGTCTCCACTCTTTTCATGTT
193 CAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC-TCGTAACAGTCTCCATTCTTTTCATGAT
* * * *
128017 TGGGAACCAA-AAACACATTCCTTTCATTAGGATACTTGACATTGACGCTTTGGTTTCGTAAGAA
257 TGGGAACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
*
128081 AAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCT-TTCAAATAAGACAAACATGAA
322 AAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAA
* * * * * ** * * *
128145 TAGTCATAATAATCCTCATTC-TTTTAGGTTTAAGCATCATAAACACATTCTCCTCCTTAA-GAT
386 TAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCT-CATAAGGAT
* * * ** *
128208 AAATGATATTGATGATTTTCTTTTGCATA
450 ACACGATATTGATG-CTTTGGTTT-CGTA
* * * * * * * * * * * *
128237 A-AAA-TCTTTTCATT-GC-CCTATTTTTCTTAAAATC-AATGTGCATTCCTTAAATATGGCAAG
1 AGAAAGGC-TTTC-TTCCCACCAATTTTT-GTAAAGTCTAA-GTTCATGCCTCAATTGTGACAAA
* ** * * * * *
128297 CATTGATTCCCGTAA-CAGTCTCCATTCA-TTTGATGATTAGGAACTAGAAACACATTC-CTTTC
62 CATGGATTCTAGTAATGA-TCTTCATTCACTTTG-TGATTAGGCACTATAAACACATTCTC-CTC
** * * * *** * * * *
128359 ATTAGGATGCATGACACTGATGCTTTGGGGTCGCAAGAAAAGCATTTT-TTT-CAACCGT-TTTT
124 ATTAGGATAAATGATATTGATGATTT-TTTTTGCATGGAAATC-TTTTCTTTGC--CC-TATTTT
* ** * * * ** * *
128421 --TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATAGTCATACCA--CTCC-TTA
184 CCT-TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTG-ATTCTCGTAACAGTCTCCATT-
* * * * * ** ** * * * * * *
128480 CTCTTTTAGGACTAGGCACC-TTAAACTTAGT-CTTCTCGTAAGGATACACGATATTCATGCTTT
246 CT-TTTCATGATTGGGAACCAAGAAACACATTCCTT-TCATTAGGATACATGACATTGATGCTTT
* * * ** * * *
128543 GGTTTCGTAAGAAACGC-TTTCTTCTCAACAATTTTTG-TA-AAGTCTAAGTTAGTGC-CTTAAT
309 GGTGTCGCAAGAAAAGCATTTCTT-TCAACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAA
** * * *** * * ** * *
128604 TGTGACAAAC-TAGGAT--TC-TAGTAATGAAC-TTC--ATT--CATTTTG--TCAT----TAAG
371 TAAGACAAACAT-GAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAG
* * ** * *
128654 -CAT-T-AT-A--A-ACAC-ATTCTTGGCGCTTTGGTGTCGCA
435 TCTTCTCATAAGGATACACGA-TATTGATGCTTTGGTTTCGTA
** * * * * * * * * * * **
128689 AGAAAAGTATTTTTTTCAACCATTTTTTATAAAATCAAAGTTTAT-CTCTTAAATAAGACAAACA
1 AG-AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC-CTCAATTGTGACAAACA
* * ** * * * * * **
128753 TGAATAGTC-A-TAATAATCCCCATTC-TTTTCAG-GATTTGGCACCATAAACATAGTCTATTCA
64 TGGAT--TCTAGTAATGATCTTCATTCACTTT--GTGATTAGGCACTATAAACACATTCTCCTCA
* * * * * * * * * *
128814 TAAGTATACACGATAATGA-AACTTTTGTTT-CGTGAGAAAGGC-TTTC-TT-CCTAACAATTTT
125 TTAGGATAAATGATATTGATGA-TTTTTTTTGCATG-GAAA-TCTTTTCTTTGCC---CTATTTT
* * *
128874 --TGTAAAGTCTAAGTTCATCCCTTAACTATGACAAACATGGATTCTAGTACTTTTCAAGATTGA
184 CCT-TAAAATCAAAGTTCATCCCTTAA--AT-----A-A-GG---C-A--A----GC---ATTGA
* * * * * * * *
128937 TTCTCATAACAGCCTCCACTCTTTTCAAGATTTGGAACCAAAAAACATATTCCTTTCATCAGGAT
226 TTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAACCAAGAAACACATTCCTTTCATTAGGAT
** * *
129002 ATGTGACATTGATGCTTTGGTGTCACAAGAAAAGCAGTT-TTTCAACCGTTTTTGATAGAATCAA
291 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAA
* * * * *
129066 AGTTTGTCTCTTCAATAAGACAAACATTG-ATAGTCATAATAATCCCCATTCTAATCT-GAATTA
356 AGTTTGTCTCTTAAATAAGACAAACA-TGAATAGTCATACTAATCCCCATTCT-TTTTAGGATTA
* * * * * *
129129 GGTACCTTAAACTTAGTCTTCTCATTAGGATACATGATGTTGATGCTTCGGTTTCGTA
419 GGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTA
* * ** * ** * * *
129187 TGAAAAG-TATTCTTCCCACCAATTTTTGCCAAGTCTAACTTCGGGCTTCAATTATGACAAACGT
1 AGAAAGGCT-TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACAT
* * * * * * *
129251 GGATTCTAGCAGTGATCTTTATTCACTTTATGATTAAGCACTATAAACATATTCTCCTCATTAAG
65 GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * *
129316 ATAAAAGATATTTATGATTTTCTATTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATC
130 ATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
129381 AAAGTTCATCCCTTAAACAAGGCAAGCATTGATTCTCATAGCAGTCTCCATTCTTTTCATGATTG
194 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
** * * * * *
129446 AAAACCAA-AAACACATTACTTTCACTAGGACACATGACATTGACGCTTTGGTGTTGCAAGAAAA
259 GGAACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * *
129510 GCGTTTCTTTTAACCGTTTTTGATAGTATCAAAGTTTGTCTCTTAAATAAGACAAACAGGAATAG
324 GCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* ** * *
129575 TAATACTAATCCTTATTCTTTTTAGGATTAGGCACCTTAAACTTAGTCTTCTCTTAAGGATACAC
389 TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC
* * *
129640 AATATTAATGCTTTGGTTTAGTA
454 GATATTGATGCTTTGGTTTCGTA
* * * *
129663 AGAAAGGCCTTCTTCCCACCAATTTTTTTAAAGTCTAAG-TCTGTGCCTCAATTGTGGCAAACAT
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC-ATGCCTCAATTGTGACAAACAT
* *
129727 GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACATATTCTTCTCATTAGG
65 GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * *
129792 ATAAATGATATTGAGGATTTTCTTTTGCATGAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATC
130 ATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
129857 AATGTTCATTCCTTAAATAAGGCAAGCAATGATTCTCGTAACAGTCTCCACTCTTTTCATGATTG
194 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
* * **
129922 GGAACCAA-AAACACATTCCTTTCAATAGGATACATGACATAGATGCTTTGGTGTTACAAGAAAA
259 GGAACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * * * *
129986 GCATTTCTTTCAACCATTTTTTAAAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATTAATAA
324 GCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * * * * *
130051 TCATACTAATCCCTATTCTATTTAGGATTAAGCACCACAAACTTTGTCTTCTCGTAAAGATACAC
389 TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC
* * *
130116 AATATTAATGCTTCGGTTTCGTA
454 GATATTGATGCTTTGGTTTCGTA
* * *
130139 AGAAAGGCTTTCTTCCCAACAATTTTTTTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
* * * *
130204 GATTCTAGTAATGATCTTCATTCACTTTGTGACTAGGCACTATAAACATATTCTCCTCCTTGGGA
66 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * *
130269 TAAAAGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCTTAATTT-CTTAAAATCA
131 TAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * ** * * *
130333 CAGTTTATCCCTTAAATATGGCAAGCATCCATTCTCATAACAGTCTCCATTCTTTTCATCATTAG
195 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGG
*** * * * *
130398 GAATGGA-AAACACATTCCTTTCATTAGTATACAAGACATTGATGCTTTGGGGTCACAAGAAAAG
260 GAACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * *
130462 CATTTCTTTCAATCC-TTTTTCATATAATCAATGTTTGTCTCTTAAATAAGACAAACCTAAATAG
325 CATTTCTTTCAA-CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * * * * * *
130526 TCATAATAATCCTCGTTCTTTTCAAGATTAGGCACCATAAACATATTCTTCTCATAAGTATACAC
389 TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC
* * ** * *
130591 TATAATGAAACTTTTGTTTCGTG
454 GATATTGATGCTTTGGTTTCGTA
* * **
130614 AGAAAGGCTTTCTTCCCAACAATTTTTATAAAGTCTAAGTTCATGCCTCAATTGAAACAAAACAT
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGAC-AAACAT
* ** *
130679 CGATTCTAGTTGTGATCTTCATTCACTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGG
65 GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * *
130744 GTAAATGATATTGATGATTTTTGTTTGCATGGAAATCATTTCATTGCCCTATTTTCCTTAAAATC
130 ATAAATGATATTGATGATTTTT-TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * *
130809 AAAGTTCCTCCCTTAAATAAGGTAGGCATTGATTCTCGAAATAGTTTCCATTCTTTTCATGATTG
194 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
* * * * *
130874 GGAACC-AGAGAA-ACATTCCTTTCATTAGGATACAAT-ACGTTGACGCTTTCGTTTCGTAAGAA
259 GGAACCAAGA-AACACATTCCTTTCATTAGGATAC-ATGACATTGATGCTTTGGTGTCGCAAGAA
** * * *
130936 AAGTGTTTTTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAAT
322 AAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
131001 AGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCA-AAACATAGTCTTCTCATAAGGATAC
387 AGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC
* *
131065 AAGATATTGATGCTTTGGTTTTGTA
452 ACGATATTGATGCTTTGGTTTCGTA
* * * ** * * * *
131090 TGAAAGGCTTTCTTCCTACCACTTTTTGCCAAGTCCAAGTTCATGCCTCAACTATGACAAACGTG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
* * * * *
131155 GATTCTAGTAGTGATCTTCATTCACTTTGTGATTAGGCACTATAACCACAGTCTTCTCATTAAGA
66 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * *
131220 TAAATGATATTGATGACTGTTTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCA
131 TAAATGATATTGATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * *
131285 AAGTTCACCCCTTAAATAAGGCAAGTATTGATTCTC-TAAACGGTCTCCATTCTTTTCATGATTG
195 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGT-AACAGTCTCCATTCTTTTCATGATTG
* * * * * *
131349 GGAACC-AGAAACACGTTCCATTCTTTA-GATTACATGACATTGATGCTTCGGGGTCGCAATAAA
259 GGAACCAAGAAACACATTCCTTTCATTAGGA-TACATGACATTGATGCTTTGGTGTCGCAAGAAA
** * *
131412 AGCATTTCTTTCAATTGTTTTTTATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATA
323 AGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * ** * *
131477 ATCATACTAATCTCCATTCTTTTTAGGATTAGGTGCCATAAACTTAGTCTTCTAATAAGGATAAA
388 GTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
* *
131542 CGATATTAATGCTTTGGTTTTGTA
453 CGATATTGATGCTTTGGTTTCGTA
* * * *
131566 AGAAAGTCTTTC-TCCCACCAATTTTTTTAATGTCTAAGTTCGTGCCTCAATTGTGGA-AAAC-T
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGT-GACAAACAT
* * * * *
131628 GGGATTCTAGTAATGATCTCCATTCACTTTTTGATTAGGCACTATAAGCACGTTTTCCTCATTAG
65 -GGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
* **
131693 GATAAATGATATTGAGGATTTTTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
129 GATAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
131758 AATGTTCATTCCTTAAGTAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCATGATTG
194 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
* * *
131823 GGAACCAA-AAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGCAAA
259 GGAACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
*
131887 GCGTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT-TCCTTAAATAAGACAAACATGAATA
324 GCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATA
* * * *
131951 GTCATGCTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAATTTAGTCTTCTCGTAAGGATAG
388 GTCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC
* * * * *
132015 ACAATAGTCATGCTTTTGTTCCGTA
452 ACGATATTGATGCTTTGGTTTCGTA
** * * * ** * *
132040 AGAAAGG-TTTCTTCTTACCAACTTTTCTAAAGACTAAGTTCGCGTCTCAATTGTGACATACATG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
* * * * *
132104 GATTCTACTAATAATCTTCATTCACTTGGTGATTAGGCATTATAAACACATTCTCCTTATTAGGA
66 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * * * *
132169 TAAATGATATAGTTGATTTTCTCTTT-CTTGGAAATCTTTTCTGTGCCTTATTTTCCTTAAAATT
131 TAAATGATATTGATGATTTT-T-TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * *
132233 AAAGTTCATCCCTGAAATACGACAACCATTAATTCTTGTAACAGTCTCCATTCTTTTTATGATTG
194 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
* * * * ** * * *
132298 GGAACCAAG-AACACAGTCCTTTCACTAGGAAACACGACATTGACACTTTACG-GTCACGAGAAA
259 GGAACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAA
* * *
132361 AGTATTTCTTTCGATCC-TTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAAT
323 AGCATTTCTTTC-AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* *
132425 AGTCATACTATTCCCCATTCTTTTTAGGATTAGGCACCATAAACTT-G-GTTCTCATAAGGATAC
387 AGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC
* *
132488 ATGATATTGATGCTTTTGTTTCGTCA
452 ACGATATTGATGCTTTGGTTTCGT-A
* ** * * *
132514 A-AAAGGCTTTCTTCACAAAAATTTTTGTAAAGTGTAAGCTCATGCCTCAATTGTGACAACCATG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
*
132578 GATTCTAGTAATGATCTTCATTCACTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGA
66 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * * * * *
132643 TAAATAATATAGTTGATTTTCTTTTCCTTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
131 TAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * * * * *
132708 AAGCTCATCCCTAAAATAGGGTAAGCATT-ATTCACATAA-TGATCTCCATTCTTTTCATGATTT
195 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAG-TCTCCATTCTTTTCATGATTG
* ** * *
132771 GGAACGAA-AAACACATTATTTTCAATAGGATACATGACCTTGATGCTTTTGG-GTCGCAAGAAA
259 GGAACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGC-TTTGGTGTCGCAAGAAA
* *
132834 AGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAAACATGAAT
323 AGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AAACATGAAT
* * * *
132899 AATCATACTAATCCCCATTCTTTTTAGGATTAGACGCCATAAACTTAGTCTACTCATAAGGATAC
387 AGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC
* *
132964 ACGATATTGATGCATTGGATTCGTA
452 ACGATATTGATGCTTTGGTTTCGTA
** * * *
132989 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAACACTAAGTTCATGCCTTAATCGTGACCAACATG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
* **
133054 GATTCTAGTAATGA--TT--TTCA-TTTAGT--TT--G---TGT------ATTCTCCTTTTTAGG
66 GATTCTAGTAATGATCTTCATTCACTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * *
133101 ATAAATGATATTGATGATTTTGTTTTTCTTGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATC
130 ATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
133166 AAAATTCATCCCTTAAATAAGGCAACCATTGATTCTC-TAATAGTCTCCATTCTTTTTC-TGATT
194 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTC-TTTTCATGATT
* * * * * *
133229 GGGAA-CTAGAAACAAATT-CTGTTAATTAGGATATATGACATAGACGCTTTGGTGTCGCAAGAA
258 GGGAACCAAGAAACACATTCCT-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* * *
133292 AAGCATTTCTTTCAACCATTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAA
322 AAGCATTTCTTTCAACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * *
133357 T-GTCATCCTAATCCCCATTCTTTTTAAGATTTGGCATCTTAAACTTAGTCTTCTCATAAGG-TC
386 TAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGAT-
* * * **
133420 ACATGATATTGATTCTTTGGCTTCACA
450 ACACGATATTGATGCTTTGGTTTCGTA
* * * * * *
133447 AGAAAGGGTTTCTTCTCAACAATTTTTGTAAAGTCCAAGTTCATGCCTCAATTATGACAAATATG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
*
133512 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGACACTATAAACACATTCTCCTCATTAGGA
66 GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * * * *
133577 TAAATGATATTGTTGATTTCTTTTGCTTGGAAATCTTTTCTTTGCACTATTTTGCTCAAAATCAA
131 TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * *
133642 AGTT-ATCCCTTAAATAAGGCATGCACTGATTCTCGTAATAGTCTCCACTCTTTTCATGATTGGG
196 AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
* * * * * * * *
133706 AACCAA-AAACGCATTGCTTTGATTAGGATACACGACACTGACGCTTTGGGGTCGTAAGTAAAAG
261 AACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAAG
* * * *
133770 TATTTCTTTATAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAA
325 CATTTCTTT-CAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * ** * * * * * * * *
133835 TCAAACAAATCCATACTCTTTTCAAGATTTGGCATCATAAACTTAGTCTTCTAATAAAGATACAA
389 TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC
* *
133900 GATATTGAAGCGTTGGTTTCGTA
454 GATATTGATGCTTTGGTTTCGTA
* ** * * * *
133923 ATAAAGGCTTTCTTCTGACCAATTTTTGCAAAGTCTATGTTCGTG-CTCAGTTGTGACAAACATG
1 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
133987 GAT
66 GAT
133990 CCCTTATGAG
Statistics
Matches: 5496, Mismatches: 996, Indels: 426
0.79 0.14 0.06
Matches are distributed among these distances:
450 1 0.00
452 11 0.00
453 37 0.01
454 94 0.02
455 14 0.00
456 4 0.00
457 2 0.00
458 147 0.03
459 180 0.03
460 50 0.01
461 2 0.00
462 7 0.00
463 3 0.00
464 2 0.00
465 7 0.00
466 1 0.00
467 3 0.00
468 2 0.00
469 4 0.00
470 5 0.00
471 10 0.00
472 13 0.00
473 200 0.04
474 849 0.15
475 1750 0.32
476 1595 0.29
477 288 0.05
478 13 0.00
479 4 0.00
480 7 0.00
481 3 0.00
483 1 0.00
484 1 0.00
485 5 0.00
486 1 0.00
487 2 0.00
489 2 0.00
490 1 0.00
491 4 0.00
492 2 0.00
493 1 0.00
494 2 0.00
495 3 0.00
496 3 0.00
497 96 0.02
498 55 0.01
499 7 0.00
500 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATG
GATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
AACCAAGAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
ATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
ATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGA
TATTGATGCTTTGGTTTCGTA
Found at i:128304 original size:317 final size:317
Alignment explanation
Indices: 127866--128469 Score: 883
Period size: 317 Copynumber: 1.9 Consensus size: 317
127856 ATTAGGCACT
* * * *
127866 ATAAACATATTCTCCTCATTAGGATAAATGATATTGAGGATTTTTTTTTGCATGATAAACTGTTC
1 ATAAACACATTCTCCTCATTAAGATAAATGATATTGAGGATTTTCTTTTGCATGAAAAACTGTTC
* ** * *
127931 TTTGCCCTATTTTCTATAAAATTGATGTTCATTCCATAAATAAGGCAAGCATTGATTCTTC-TAA
66 ATTGCCCTATTTTCTATAAAATCAATGTGCATTCCATAAATAAGGCAAGCATTGATTC-CCGTAA
* * * * *
127995 CAGTCTCCACTCTTTTCATGTTTGGGAACCAAAAACACATTCCTTTCATTAGGATACTTGACATT
130 CAGTCTCCACTCATTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACACT
** *
128060 GACGCTTTGGTTTCGTAAGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCT-
195 GACGCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTC
128124 TTCAAATAAGACAAACATGAATAGTCATAATAATCCTCATTCTTTTAGGTTTAAGCATC
260 TT-AAATAAGACAAACATGAATAGTCATAATAATCCTCATTCTTTTAGGTTTAAGCATC
* * *
128183 ATAAACACATTCTCCTCCTTAAGATAAATGATATTGATGATTTTCTTTTGCAT-AAAAATCTTTT
1 ATAAACACATTCTCCTCATTAAGATAAATGATATTGAGGATTTTCTTTTGCATGAAAAA-CTGTT
* *
128247 CATTGCCCTATTTTTCT-TAAAATCAATGTGCATTCCTTAAATATGGCAAGCATTGATTCCCGTA
65 CATTGCCCTA-TTTTCTATAAAATCAATGTGCATTCCATAAATAAGGCAAGCATTGATTCCCGTA
* * * * *
128311 ACAGTCTCCATTCATTTGATGATTAGGAACTAGAAACACATTCCTTTCATTAGGATGCATGACAC
129 ACAGTCTCCACTCATTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACAC
* *
128376 TGATGCTTTGGGGTCGCAAGAAAAGCATTTTTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCT
194 TGACGCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCT
128441 CTTAAATAAGACAAACATGAATAGTCATA
259 CTTAAATAAGACAAACATGAATAGTCATA
128470 CCACTCCTTA
Statistics
Matches: 254, Mismatches: 29, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
316 5 0.02
317 241 0.95
318 8 0.03
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (317 bp):
ATAAACACATTCTCCTCATTAAGATAAATGATATTGAGGATTTTCTTTTGCATGAAAAACTGTTC
ATTGCCCTATTTTCTATAAAATCAATGTGCATTCCATAAATAAGGCAAGCATTGATTCCCGTAAC
AGTCTCCACTCATTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACACTG
ACGCTTTGGGGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTGTCTCT
TAAATAAGACAAACATGAATAGTCATAATAATCCTCATTCTTTTAGGTTTAAGCATC
Found at i:134887 original size:475 final size:476
Alignment explanation
Indices: 133991--145254 Score: 14834
Period size: 475 Copynumber: 23.7 Consensus size: 476
133981 AACATGGATC
* * * * *
133991 CCTTATGAGAAGACTAAGTTTATGGTGCCCAATCTAGAAAAGAATGAGCATTAGTGTGACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
134056 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * *
134121 TGTGACATTAAAACGTCAATGTCGCGTATCCTATTGAAAAGAATGTGTTTTTGGTTCCTAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* *
134186 GAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACCTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* *
134251 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGGAAATC-GCCTATATCATTTATCCTAAG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCC-ATATCATTTATCCTAAG
* *
134315 GAGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGAAGATCATTACTAGAATCCATATTT
325 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTT
* * *
134380 GTCCCTTTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAG-CTTTCTTGCGAAA
390 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
134444 CCAAACCATCAATATCGTGTAT
455 CCAAACCATCAATATCGTGTAT
*
134466 GCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
134531 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * *
134596 TGCGGCATTAAAGCGTCAATGTCGCGTATCCTTTTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* *
134661 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTATGGAATGAACTTTGATTCTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * *
134726 AGGAAAGTGGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCCATACCATTTATCCTAAGG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* * * *
134791 GGGAGAATAAGTTTATACTGCCTAATCACAACATGAATGAAGATGACTACTAGAATCCATGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
134856 GCACATTTGAGGCACGAACAAAGATTTTACCAAAATTGGTGGGAAGTAAG-CTTTCTTACGAAAC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
134920 CAAAGCATCAATATCGTGTAT
456 CAAACCATCAATATCGTGTAT
* * *
134941 GCTTATCAGAAGACTAAGTTTTTGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* *
135006 ATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* *
135071 TGCGACATTAAAACATCAATGTCGCGTACCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
*
135136 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACCTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* *
135201 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGGAAATCA-CCTATATCATTTATCCTATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCC-ATATCATTTATCCTAAG
* *
135265 GAGGAGAATAAGTTTATACTACCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATATTT
325 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTT
* * *
135330 GTCCCTTTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAG-CTTTCTTGCGAAA
390 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
135394 CCAAACCATCAATATCGTGTAT
455 CCAAACCATCAATATCGTGTAT
* *
135416 GCTTATGAGAAGACTAAGTTTTTGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* *
135481 ATATTTGTCTTATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTTGAAGGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* *
135545 TGCGACATTAAAACATCAATGTCGCGTACCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
*
135610 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACCTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* *
135675 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGGAAATCA-CCTATATCATTTATGCTAAG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCC-ATATCATTTATCCTAAG
* *
135739 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTTAATGAAGATCATTACTAGAATCTATGTTT
325 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTT
* *
135804 GTCACATTTGCGGCCCGAACATAGACTTTACCAAAATTGGTGGGAAGAAAG-CTTTCTTACGAAA
390 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
135868 CCAAACCATCAATATCGTGTAT
455 CCAAACCATCAATATCGTGTAT
* *
135890 GCTTAT-ACGAAGACTAAGTTTATGGTGCCTAATCCAAAAAGGAATGAGGATTTGTGTGACTATT
1 CCTTATGA-GAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATT
* * * *
135954 CATGTTTGTCTTATTTAAGAGACAGACTTTGATTCTATCAAAAATGGTTGGAAGAAATGCCTTTC
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTC
* * * *** *
136019 ATGCGACATTAAA-TAGTCAATTTTTAAGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAAT
130 TTGCGACATTAAAGCA-TCAA-TGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAAT
* * * *
136083 CTCGTAATGAGTGGAGATTGTTGTGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTCATT
193 CTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATT
* *
136148 TTATGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTA
258 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTA
* * * * *
136213 AGGAGGAGAATAATTTTATACTACCTAATCACAACGTGAATGAAAATTATTACTAGAATCCATGC
323 AGGAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGT
* * * *
136278 TTGGCACATTTGAGGCACGAATATAGACTTTACCAAAATTGGTGGGAAGGAAG-CTTTCCTACGA
388 TTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGA
*
136342 AACCAAACCATCAATATCGTGTAC
453 AACCAAACCATCAATATCGTGTAT
* *
136366 CCTTATGAGAA-ACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGA-GAGTTAGTGTGACTATT
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGA-TTTGTGTGACTATT
*
136429 CATGTTTGTCTTATTTAAGAGACAAATTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTC
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTC
* *** * *
136494 TTGTGACATTAAAATGTCAATGTCGCATATCCTACTGGAAA-GAATGTGTTTTTGGTTCCCAATC
130 TTGCGACATTAAAGCATCAATGTCGCGTATCCTA-TTGAAAGGAATGTGTTTTTGGTTCCCAATC
* *
136558 TCGAAAAGAGTGGAGATTGTTATGAGAATTAATGCTTGCCTTATTTAAGGAATGAACCTTGATTT
194 TCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
*
136623 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGGAAATCA-CCTATATCATTTATCCTA
259 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCC-ATATCATTTATCCTA
* *
136687 AGGAGGAGAATAAGTTTATACTACCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATAT
323 AGGAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGT
* * * *
136752 TTGTCCCTTTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCCTACAA
388 TTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGA
*
136817 AACCAAACAATCAATATCGTGTAT
453 AACCAAACCATCAATATCGTGTAT
* *
136841 CCTTATGAGAAGACTAAGTTTCTGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTT
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTA-TT
* * *
136906 -ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAGCGATTGGAAGAAATGCTTTTC
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTC
* *
136970 TTGCGACATCAAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAAAT-
130 TTGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCC-AATC
* * ** * *
137034 TCGAAAAGAGTGGAGACTATTGCGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTT
194 TCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
* * *
137099 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCGAA
259 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
** * * * * * * * ** * *
137164 TCAGAAGAATATGATTAAAGTGCTTAAACACAAAATGAATGAAGACCATTACTAGAATCCATGTG
324 GGAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTT
* * * * * *
137229 TGTCACAATTGAGGCACGAACATAGACTTTTCCGAAATTGGTGGCAAGCAAGCCTTTCTTACAAA
389 TGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
* *
137294 ATCAAACCATCAATATCATGTAT
454 ACCAAACCATCAATATCGTGTAT
* * *
137317 CTTTATGAGAAGACTAAGTTTATAGTGCCTAATCCAAAAAAGAATGAGGATTTCTGTGACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* *
137382 TTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCCTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * * *
137447 TGCGACATTACAGCGTCAATGTCGCATATCCTACTGAAAGGAATGTGGTTTTGGTTCCCAATCTT
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* *
137512 GAAAAGTGTGGAGATTGTTATGAGAATCAATGCTTCCCTTATTTAAGGAATGAACTTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * *
137577 AGGAAAATAGTGCAAAGAAAAGATTTCCATACGAAAGAAATTCATCCATATCATTTATCCTAAGG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* * * *
137642 AGGAGAAAAAGTTTATACTACCTAATCACAACGTGAATGAAGATCTTTACAAGAATCCATGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * *
137707 GCACATTTCAGGTATGAACATAGAATTTACCAAAATTGGTGGGAAGGAAG-CTTTCTTACAAAAC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
137771 CAAACCCTCAATATCGTGTAT
456 CAAACCATCAATATCGTGTAT
* * * * * * * *
137792 CCTTGTAAGAAGACTAAATTTATGGTGCCTAATCCGAAAAAGAATAAGGATTAGTGTGACCACTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* ** * *
137857 ATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAATAGTTGGAAGAAATGTTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * **
137922 TGTGACATCAAAGCGTCAATGTCGCGTATCCTATTGAAAAAAATGTGTTTTTGGTTCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * * * **
137987 GAAAAGAGTGGAGAATGTTACGAGAATTAATGCTTGCCTTATTTATGGAATTCACTTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * * * *
138052 AGGAAAATAGGGCAAAGAAAAGATTT-CAAGCAGAGGAAAACCATCCATATCATCTATCCTGAGG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* * * * * *
138116 AGGAGAATAAGTTTATACTACCTAATCACAACGTGAACGAAGATTATTACTACAATTCACGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* ** * *
138181 TCACATTTGAGGCATGGGCATAAACTTTGCCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* * *
138246 CAAAGCTTCAATATCATGTAT
456 CAAACCATCAATATCGTGTAT
* * * *
138267 CCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAGAATAAGGATTTTTGTGACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* *
138332 ATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAACAGTTGAAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* *
138397 TGCAACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTCTGGTTCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
138462 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
** * *
138527 AAAAAAATAGTGCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* *
138592 AGGAGAATAAGTTTATACTGCCTAATCAGAACGTGAATGAAGATCATTACTACAATCCATGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
138657 TCACATTTGAGGCATGAATATAGACTTTACCAAAATTTGTGGGAAGAAAGCCTTTCTTATGAAAC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* *
138722 CAAAGCTTCAATATCGTGTAT
456 CAAACCATCAATATCGTGTAT
* * * * * *
138743 CCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGTCAATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* * * *** * *
138808 ATGTTTGTCTTATTTTAGAGATAAACTTTGATTCTGTCAAAAACACCTGAAGGAAATGCTTTTTT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* ** * *** * * *
138873 TACGACACCAAAGCATCAATATCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATGTT
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * ** *
138938 GAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTGAGGGTTGAA-ATTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * *
139002 AGGAAAATAGGGCAAAGAAAACATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* ** * * * ** * * *
139067 AGAAGAATTCGTTTACAGTGCCTAATCCCAAAATGAA-GCAAGACCATTACAAGAATCCAAGTTT
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATG-AAGATCATTACTAGAATCCATGTTT
* * * * * *
139131 GTCACAGTTGAGGCACGAACTTATACTTTACCAAAATTGATGGGAGGAAAGCCTTTCTTATGAAA
390 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
139196 CCAAACCATCAATATCGTGTAT
455 CCAAACCATCAATATCGTGTAT
* * * * * *
139218 GCTTATGAGAAGACTAAGTTTATGGTGTCC-AATCTGAAAAAA-AATGAAGATTAGTGAGACTAC
1 CCTTATGAGAAGACTAAGTTTATGGTG-CCTAATC-CAAAAAAGAATGAGGATTTGTGTGACTAT
* * * * *
139281 TCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTATCAAAAATGATTGGAAGAAATGCCTTT
64 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTT
* * * * * *
139346 CTTGCGGCATCAAAGCGTCAATGTCTCATATCCTATTGAAAGGAATGTGTTTTTGGTTCCTAATC
129 CTTGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATC
* * * * *
139411 TCAAAAAGAGTGGAAACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTT
194 TCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTT
* ** * * *
139476 TAAGTAAAATATTGCAAAGAAAAGATTTCCAAGCAAAATAAAATCATCCATATCATTTATCCTGA
259 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA
* * *
139541 GGAGGAGAATAAGTTTATACTACCCAATCACAATGTGAATGAAGATC--TACTAGAATCCATGTT
324 GGAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTT
* * * * *
139604 TGGCACATTTGAGGCATGAACAAAGACTTTACCAAAATTGGTGGAAAGAAAG-CTTTCTTATGAA
389 TGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
* *
139668 ACCAAACCATGAATATCATGTAT
454 ACCAAACCATCAATATCGTGTAT
* * * * * * * * * *
139691 GCTTATGAGAAAACTAAGTTTA---TG-CTTAT-GAGAAGACTAAG-TTTATGCTTATGAGAAGA
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCA-AA-A--AAGAATGAGGATT-TGTG-TGA
* * * ** ** ** * *** ** * * *
139750 CTAAGTTTATG-GTGCCAAATCCAA-A-A-AAGACTGAGGATT-TGT--GTGACTATT-CATG-T
60 CT-A-TTCATGTTTGTCTTATTTAAGAGACAA-ACT-TTGATTCTATCAAAAACGGTTGAAAGAA
* * ** * * * * ** ** ** ** *
139806 TTGTCTTAT-TTAAGAGA-CAAA-C-TCTGAT-TCTATCAAAAACGGTTGGGAGAAATGCT-TTT
121 ATG-CTTTTCTTGCGACATTAAAGCATC-AATGTC--GCGTATCCTATTGAAAGGAATG-TGTTT
* * * ** *
139865 CTTGCGACATCAAAACATCAATGTCGCATATCCTATTGAAAGGA-ATGTGTTTTTG-GTTCCCAA
181 -TTG-G--TTC----C--CAATCTCG-A-A----A-AGAGTGGAGAT-TG-TTATGAG-----AA
* * * * * * *
139928 TCTCGAAAAGAC-TG-TTTCTCCTAAGGAATTAAATTTGATTTTAAGGAAAATAAGGCAAAGAAA
222 --TC--AATG-CTTGCCTTAT-TTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * * * * *
139991 AGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAATGAGAATAATACGTTTATAGTG
281 AGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTG
** * * * *
140056 CCTAATCACAAAATGAATGAATACCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACT
346 CCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACA
* * * * **
140121 TACG-CTTTACCGAAATTAGTGGGAAGAAAGCCTTTCTTACAAAATCAAACCATCAATATCACGT
411 TA-GACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGT
140185 AT
475 AT
* * * * * * *
140187 GCTCATGAGAAGACTACGTTTATAGTGCCTAATCCAAAAAAGAATAAGGATTTCTATGACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* *
140252 TTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * *
140317 TGCGACAATAAAGCATCAATGTCGCGTATCCTATTGAAAAGAAAGCGTTTTTGGTTCCCAATCCC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* ** * * *
140382 GAAAAGAGTCGAGGCTATTATGAGAATCAATGCTTGCCTTATTTACGGAATAAACTTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * *
140447 AGGAAAATATGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATGATCCATACCATTTATCCTAAGG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* *
140512 AGGAGAATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCCATGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * *
140577 TCACATTTGAGGCATGGACATAGACTTTACTAAAATAGGTGGGAAGAAAGCCTGTCTTGCAAAAC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* *
140642 CAAAGCTTCAATATCGTGTAT
456 CAAACCATCAATATCGTGTAT
* *
140663 CCTTATGAGAAGACTAAGTTTAAGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* * *
140728 ATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTTGGAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * *
140793 TGCGACATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATGTT
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * * *
140858 GAAAAGAGTGGAGACTGTTATGAGAATCTATGCTTGCCTTATTTAAGGGATGAA-TTTGATTTGA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* *
140922 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* * * ** *
140987 AGAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * *
141052 TCACAATTGAGGCACGAACTTACACTTTACGAAAATTGGTGGGAAGGAAG-CTTTCTTACGGAAC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
141116 CAAACCATCAATATCATGTAT
456 CAAACCATCAATATCGTGTAT
* * * *
141137 CCTTATGAGAAGACTAAGTTTGTGGTGCCTAATCCAAAAAAGAATAAGGGTTTGTGTGACTAATC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* * *
141202 ATGTTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAACAGTTGGAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * **
141267 TGCGACATCAAAGCGTCAATGTCGCGTATCCTAATG---GGAATGTGTTTTTGGCCCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * * *
141329 GAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * *
141394 AGGAATATAGGGCAAAAAAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
261 AGGAAAATAGGGC-----AAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCC
* * * * * ** ** *
141459 TAATGAGAAGAATACGTTTATAGTACCTAATCACAAAATGAATGAAGGCCGTTACTAGAATCCAT
321 TAAGGAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCAT
* * * * * * * *
141524 GTTTGTCACAATTGAGGCATGAACTTACACCTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTAT
386 GTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTAC
141589 GAAACCAAACCATCAATATCGTGTAT
451 GAAACCAAACCATCAATATCGTGTAT
* ** * * *
141615 CCTTATGAGAAGACTAAGTTTATGCTGCCTAATCTGAAAAAGAATGAGGATTAGTTTGACTACTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* * * * *
141680 ATGTTTATCTTATTTAAGAGATAAACATTGATTTTATCAAAAACGGTTGGAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * *
141745 TGCGACATTAAAGCATCAATGTTGCGTATCCTAATGAAAGGAAAGTGTTTTTTGTTCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * * *
141810 GAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
** * * * *
141875 AGGAAAATAGGGCAAAGAAAAGATTTCCATGTGAAAGAAAATCATCAATATCATTTATTCGAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* * * * ** * * **
141940 AGAAGAATATGTTCATAGTGCCTAATCACAAAATGAATGAAGACCATTACTATAATAGATGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * * *
142005 TCATAATTAAGGCACAAACTTACACTTTACCGAAATTGGTGGGAAGAAAGCCTTTCTTACGAAGC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
142070 CAAACCATCAATATCGTGTAT
456 CAAACCATCAATATCGTGTAT
* * * * *
142091 GCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAGAGAATAAGGATTTCTGTGACTTTTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* *
142156 ATGTTTGTCTTATTTAGGA-ACAAACTTTGATTCTATCAAAAACGATTGAAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* *
142220 TGCAACATTAAAGCATCAATGTCACGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* *
142285 GAAAAGGGTGGGGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
*
142350 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATTATTTA-CCATAAG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCC-TAAG
* * * *
142414 GAGGAGAATAAGTTTATACTGCCTAATCACAATGTGAATGTAGGTCATTACTACAATCCATGTTT
325 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTT
* * * *
142479 GTCACATTTGAGGCACGAAGATCGACTTTACCAAAATCGGTGGGAAGAAAG-CTTTCTTATGAAA
390 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
142543 CCAAACCATCAATATCGTGTAT
455 CCAAACCATCAATATCGTGTAT
* * *
142565 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAGTGAGGATTAGTGTGACTACTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
*
142630 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTATTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * *
142695 TGCGACATCAAAGCGTCAATGTCACGTATCCTATTGAAAAGAATGTGTTTTTGGTTCCCAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * * * * *
142760 GAAAAGAGTGGAGACTGTTACGAGAATTAATGCTTGCCTTCTTTAAGGAATTAACTTTGATTTTC
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* *
142825 AGGAAAATAGGGCAAAGAAAAGATTT-CAAGCAGAAGAAAATCATCCATATCATTTATCCTAAGG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* * *
142889 AGGAGAATAAGTTTATACTACCTAATCACAACGTGAATGAAGATCATTACTATAATCCACGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
142954 TCACATTTGAGGCATGAACATAGACTTTGCCAAAATTGATGGGAAGAAAGCCTTTCTTATGAAAC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* * * *
143019 CGAAGCTTCAATATCATGTAT
456 CAAACCATCAATATCGTGTAT
* * * * * * * * *
143040 CCTTATGGGAAAACTAAGTTTATGGCGCCTAATCCTAAAAGGAATAAGGATTTTTCTAACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* * *
143105 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTCTCAAAAACGGTTGAAATAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * *
143170 TGC-AGCATTAAAGCATCAATGTCCCGTATCCTATTAAAAGGAATGTGTTTCTGGTTCCCAATCT
131 TGCGA-CATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCT
* * *
143234 CGAAAAGAGTGGAGATTGTTATGAGAATTAATGCTTACCTTATTTTAGGAATGAACTTTGATTTT
195 CGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTT
* *
143299 AAAGAAAATAGTGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAG
260 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAG
* *
143364 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGATTTGAAGATCATTACTACAATCCATGTT
325 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGA-ATGAAGATCATTACTAGAATCCATGTT
* * * *
143429 TGTCACAATTGAGGCATGAACATAGACTTT-CCTAAAATTGGTGGGAAGAAAGCCTTTCTTGCAA
389 TGTCACATTTGAGGCACGAACATAGACTTTACC-AAAATTGGTGGGAAGAAAGCCTTTCTTACGA
* *
143493 AACCAAAGCTTCAATATCGTGTAT
453 AACCAAACCATCAATATCGTGTAT
* *
143517 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACCAATC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
*
143582 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * * * *
143647 TGTGACATCAAAGCATCAATGTTGCGTATCCTAATGAAATGAATGTGTTTTTGGTTCCCAATGTT
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * * *
143712 GAAAAGAGTGGAGACTGTTACGAGAATTAATGCTTGCCTTATTTAAGGGATGAA-TTTGATTTTA
196 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * *
143776 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCGAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
* * * ** *
143841 AGAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTG
326 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * ** *
143906 TCACAATTGAGGCACGAACTTACACTTTACTGAAATTGGTGGGAAGAAAGCCTTTCTTACGAAGC
391 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
143971 CAAACCATCAGTATCGTGTAT
456 CAAACCATCAATATCGTGTAT
* * *
143992 GCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAT-AGGGATTTTTATGACTATT
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGA-GGATTTGTGTGACTATT
* *
144056 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAACGGATGAAAGAAATGCTTTTC
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTC
* * * * *
144121 TTGCAACATTAAAGCGTCAATGTCACATATCCTATTGAAAGGAATGTGTTTTTGGTTCCAAATCT
130 TTGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCT
* * *
144186 TGAAAAGGGTGGGGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTT
195 CGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTT
* * *
144251 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCGAAT
260 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAG
** ** * ** * *
144316 GAAAAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCAAGTTT
325 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * *
144381 GTCACAATTGAGGCACGAACTTACACTTTACCGAAATTGGTGCGAAGAAAGCCTTTCTTATGAAG
390 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
* * *
144446 CTAAACCATTAATATCTTGTAT
455 CCAAACCATCAATATCGTGTAT
* * * *
144468 GCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTTCTATGACTATTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
* *
144533 ATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * *
144598 TGCAACATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATATGTTTTTGGTTCCTAATCTC
131 TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* *
144663 GAAAA-AGGTGGGGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGTAATGAACTTTGATTTT
196 GAAAAGA-GTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTT
*
144727 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCATAAG
260 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAG
*
144792 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTT
325 GAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTT
* * *
144857 GTCACATTTGAGGCACGAACATCGACTTTACAAAAATTGGTGGGAAGAAAG-CTTTCTTATGAAA
390 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
144921 CCAAACCATCAATATCGTGTAT
455 CCAAACCATCAATATCGTGTAT
* * * *
144943 CCTTATGAGAAGACGAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGATTAGTGTGACTACTC
1 CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
*
145008 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAATACGGTTGAAAGAAATGCTATTC
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA-ACGGTTGAAAGAAATGCTTTTC
* * * * * * *
145073 TTCCGACATCAAAGCTTTAATGACACGTATCCTATTGAAAGGAATGTGTTTTTGATTCCCAATCT
130 TTGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCT
* * * *
145138 CGAAAAGAGTGGAGACTGTTACGAGAATTAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTT
195 CGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTT
* * *
145203 CAGGAAAATAGGGCAAAGAAAAGATTT-CAAGCAGAAGAAAATCATCCATATC
260 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATC
145255 TATTAGGATC
Statistics
Matches: 9504, Mismatches: 1154, Indels: 262
0.87 0.11 0.02
Matches are distributed among these distances:
465 4 0.00
466 3 0.00
467 23 0.00
468 13 0.00
469 9 0.00
470 6 0.00
471 83 0.01
472 29 0.00
473 67 0.01
474 1341 0.14
475 3584 0.38
476 3199 0.34
477 498 0.05
478 184 0.02
479 1 0.00
480 2 0.00
481 99 0.01
483 2 0.00
484 12 0.00
485 9 0.00
486 1 0.00
489 2 0.00
490 1 0.00
491 3 0.00
492 9 0.00
493 117 0.01
494 6 0.00
495 66 0.01
496 59 0.01
497 10 0.00
498 9 0.00
499 6 0.00
500 13 0.00
501 11 0.00
502 16 0.00
503 3 0.00
504 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
CCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTC
ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
TGCGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
CAAACCATCAATATCGTGTAT
Found at i:139714 original size:23 final size:23
Alignment explanation
Indices: 139688--139760 Score: 137
Period size: 23 Copynumber: 3.2 Consensus size: 23
139678 GAATATCATG
*
139688 TATGCTTATGAGAAAACTAAGTT
1 TATGCTTATGAGAAGACTAAGTT
139711 TATGCTTATGAGAAGACTAAGTT
1 TATGCTTATGAGAAGACTAAGTT
139734 TATGCTTATGAGAAGACTAAGTT
1 TATGCTTATGAGAAGACTAAGTT
139757 TATG
1 TATG
139761 GTGCCAAATC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (23 bp):
TATGCTTATGAGAAGACTAAGTT
Found at i:145566 original size:30 final size:29
Alignment explanation
Indices: 145530--145589 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
145520 ACACACCCAG
*
145530 ATGTATCGATACATGCTGCCTTGTATCGAT
1 ATGTATCGATACATG-TGCATTGTATCGAT
*
145560 ATGTATCGATACATGTTCATTGTATCGAT
1 ATGTATCGATACATGTGCATTGTATCGAT
145589 A
1 A
145590 CATGAAACTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (29 bp):
ATGTATCGATACATGTGCATTGTATCGAT
Found at i:145991 original size:184 final size:184
Alignment explanation
Indices: 145682--146027 Score: 665
Period size: 184 Copynumber: 1.9 Consensus size: 184
145672 GAAATGTATC
*
145682 GACACATAGCTTGTAATGGCTATAATTTCAAATCAATGTATCGATATGTGGCTACGGGAAAGCAT
1 GACACATAGCTTGTAACGGCTATAATTTCAAATCAATGTATCGATATGTGGCTACGGGAAAGCAT
* *
145747 GAAAACAAGCACCAAACAAGCTTGTAACGGCTAGTAACTTAATTATTCAACCTCCAACGGCTACA
66 GAAAACAAGCACCAAACAAGCTTGTAACGGCTAGTAACTCAATCATTCAACCTCCAACGGCTACA
145812 TCAGCATTCAAGCCTATAAATATGAGTTTTCAAATCATATTTATAGCTTGTAAT
131 TCAGCATTCAAGCCTATAAATATGAGTTTTCAAATCATATTTATAGCTTGTAAT
145866 GACACATAGCTTGTAACGGCTATAATTTCAAATCAATGTATCGATATGTGGCTACGGGAAAGCAT
1 GACACATAGCTTGTAACGGCTATAATTTCAAATCAATGTATCGATATGTGGCTACGGGAAAGCAT
145931 GAAAACAAGCACCAAACAAGCTTGTAACGGCTAGTAACTCAATCATTCAACCTCCAACGGCTACA
66 GAAAACAAGCACCAAACAAGCTTGTAACGGCTAGTAACTCAATCATTCAACCTCCAACGGCTACA
145996 TCAGCATTCAAGCCTATAAATATGAGTTTTCA
131 TCAGCATTCAAGCCTATAAATATGAGTTTTCA
146028 GCACCTGAAC
Statistics
Matches: 159, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 159 1.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (184 bp):
GACACATAGCTTGTAACGGCTATAATTTCAAATCAATGTATCGATATGTGGCTACGGGAAAGCAT
GAAAACAAGCACCAAACAAGCTTGTAACGGCTAGTAACTCAATCATTCAACCTCCAACGGCTACA
TCAGCATTCAAGCCTATAAATATGAGTTTTCAAATCATATTTATAGCTTGTAAT
Found at i:155400 original size:12 final size:11
Alignment explanation
Indices: 155378--155453 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
155368 AGAGAAAGAA
*
155378 GAGAGAGGAGG
1 GAGATAGGAGG
155389 GATGATAGGAGG
1 GA-GATAGGAGG
*
155401 AGAGACAGGA--
1 -GAGATAGGAGG
*
155411 GAGATAGTA--
1 GAGATAGGAGG
155420 GAGATAGGAGG
1 GAGATAGGAGG
155431 GATGATAGGAGG
1 GA-GATAGGAGG
*
155443 AGAGACAGGAG
1 -GAGATAGGAG
155454 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:155410 original size:24 final size:24
Alignment explanation
Indices: 155377--155462 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
155367 AAGAGAAAGA
*
155377 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
155401 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
155419 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
155443 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
155463 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:155429 original size:42 final size:42
Alignment explanation
Indices: 155368--155486 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
155358 TAGCCCTCAA
* *
155368 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
155410 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
155452 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
155487 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:157709 original size:476 final size:476
Alignment explanation
Indices: 156322--188921 Score: 15193
Period size: 476 Copynumber: 67.1 Consensus size: 476
156312 TCCATCATCA
* * * * *
156322 ATGCAAAAGAAAATCATCAATATCATTTAT-CTGAATGAGAAGAATACGTTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCT-AAGGAGGAGAATAAGTTTATACTGCCTAATC
* * * * ** * * *
156386 ACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGCCTCAAATGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
156451 TACCAAAATTGGTTGGAAGAAAGCCTTTCTTACGAAGCCAAACCATCAATATCGTGTATGCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * *
156516 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTTTTGTGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * * *
156581 GTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTTGAAAGAAATGCTATTCTTCCCAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* *** * * *
156646 ATGAAAGCGTCAATGTCATGTATCC-TATTGAAAGGAATGAGTTTATGGTTCCCAATCTCGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * *
156710 GAGTGGAGACTGTTACGAGAATTAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTCAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
156775 AATAGGGTAAAGAAAAGATTT-C
454 AATAGGGCAAAGAAAAGATTTCC
* * *
156797 AAGCAGAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTACCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** ** * *
156862 CAATGTGAATGAAGATCATTACTACAATCCACATTTGTCACATTTGAGGCATAAACTTAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * * *
156927 GCCAAAATTGGTGGGAAG-AAGCCTTTCTTATGAAACCAAAGCTTCAATATCATGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * * * * *
156991 GGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAATAAGGATTT-TTTGGCTATTCATGTGTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* * * *
157055 GCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTCGAAAGAAATGCTTTTCTT-CCAGC
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-C
* * *** * * * *
157119 ATTAAAGCATCAATGTCAAGTATCC-TATTGAAAGGATTGTGTTTCTAGTTCCCAATCTCGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * *
157183 GAGTGGAGATTGTTATGAGAATCAATGCTCGCCTTATTTAAGGAATGAACTTTGATTTTAAAGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
157248 AATAGTGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* *
157271 ATGCAAAAGAAAATCATCCATATCATTTATTCTAAGGAGGAGAATAAGTTTATACTACCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
157336 CAACGTGAATGAAGATCATTACTACAATCCATGCTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
*** * * * * *
157401 ATTGAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAGCAAAGCTTCAACATCGTGAATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* *
157466 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGAGTAACTAATCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* * * *
157531 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGATGGAAGAAATGCTTTCCTTGTGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* * ** * *
157596 TCATAGCATCAATGTTGCAAATCCTTATGCAAGGAATGTGTTTTTGGTTCCCAATGTTGAAAAGA
326 TCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * *
157661 GTGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAAGAAAA
391 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAAA
157726 TAGGGCAAAGAAAAGATTTCC
456 TAGGGCAAAGAAAAGATTTCC
** * *
157747 ATGCAAAAGAAAATCATGAATATCATTTATCATAAGAAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** * *
157812 CAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCACGAACATCA-CCTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACAT-AGACTT
** * *
157876 TACCAAAATTGGTGGGAAGAAAG-CTTTCTTTTGAAACCAAATCATCAATATCGTGTATCCTTAA
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * *
157940 AAGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAAAGAGGATTAGTGTGACTACTCATATTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * * * ** *
158005 GTCTTATTTAAGAGATAAACTATGATTCTATCGAAAACGGTTGAAAGAAATGCTATTCTTATGGC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
** * *
158070 ATCAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGTGTTTCTGGTTCCCAATCTCGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * * * *
158134 AAGTGGAGACTGTTACGAGATTTAATACTTGCCTTATTTAAGGAATTAACTTTGATTTTCAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
158199 AATAGGGCAAAGAAAAGATTT-C
454 AATAGGGCAAAGAAAAGATTTCC
* ** *
158221 AAGCAGCAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTATATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
158286 CAACGTGAATGAAGA-CTATTACTACAATCCACGTTTGTCACATTTGAGGCATGAACATAAGACT
66 CAAAATGAATGAAGATC-ATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACAT-AGACT
* * * *
158350 TTGCCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCTTCAATATCATGTATCCTTA
129 TTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * * * * * * *
158415 TGGGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAATAAGGATTTTTTTGACTATTCATGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* * * * *
158480 TCTCTTATTTGAGGGACAAACTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTG-TA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* ** * * * **
158544 GCATTAAAGTATCAATGTCGCGTATCC-TATTGAAAGGAATGTGGTTCTGGTTCCCAATCCCGAA
324 -CATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * * *
158608 AAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATATTAAAG
387 AAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGG
*
158673 AAAATAGTGCAAAGAAAAGATTTCC
452 AAAATAGGGCAAAGAAAAGATTTCC
* * *
158698 ATGCAAAAGAAAATCATCCAAATCATTTATCCCAGGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * *
158763 CAACATGAATGAAGATCATTACTACAATCCATATTCGTCATATTTGAGGCAGGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
158828 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAGCAAAGCTTCAATATCGTGTATCCTTAAG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * *
158893 AGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAGAATAAGGATTAGTATGAC-AATTCATATTT
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAA-TCATGTTT
* * * *
158957 GTCTTGTTTTAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTTTTACGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * **** * *
159022 ACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATGTTGAAAAG
325 ATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * * * *
159087 AGAGGAGACTATTACGAGAATCAGTGCTTGCCTTATTTAAGGGATGAA-ATTGATTTTCAA-GAA
390 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTT-AAGGAA
159150 AATAGGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* ** * * * *
159173 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATTAGAAGAATACGTTTATAGTGCCGAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* ** * ** * *
159238 CAAAATAAATGAAGA-CTATTACTGGAATCCATGTTTGTCACAATTGAGGCACAAACTTACACTT
66 CAAAATGAATGAAGATC-ATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
** * *
159302 TACCAAAATTGGTATGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * *
159367 GAGAAGACTAAGTTTATGGTGCCTACA-ACGAAAAAGAATGAGGATTAGTGTGACTATTCATGTT
195 GAGAAGACTAAGTTTATGGTGCCTA-ATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* * *
159431 TGTCTTATTTAAGAGAC--ACTTTGATACTATCAAAAACGATTGGAAGAAATGCTTTTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * * *
159494 CATCAAAGCGTCAATGTCGCGTATCC-TACTGAAAAGAATATGTTTTTGGTTCTCAATCTTGAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
*
159558 GGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
*
159623 AAATAGGGCGAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* ** * *
159647 AAGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAACTTATATTGCCCAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** * * *
159712 CAACGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
*
159777 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * *
159842 AGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGATTAGTGTGACTACTCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* * *
159907 GCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTTTG-AAGAAATGCTTTTCTTGCGAC
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGAC
* * * *
159971 ATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAAG
325 ATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * *
160036 AGTGGAGACTGTTACGGGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGG--A
390 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAA
*
160099 ATAAGGCAAAGAAAAGATTTCC
455 ATAGGGCAAAGAAAAGATTTCC
* * * * * * * *
160121 ATGTAACAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTAATAA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * ** * * * * *
160186 CAAAATGAATGAATG-CCATTACTAGAATCTGTGTTTGTCACAATTGAGGCACGGACTTACACTT
66 CAAAATGAATGAA-GATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * * *
160250 TACAAAAATTGGTGGGAAGAATGCCCTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * *
160315 GGGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
160380 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTAGGGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * * * *
160445 ATCGAAGCATCTATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCTAATCTCGAAAAG
325 ATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * *
160510 AGTGGAGACTATTATGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGATTTTAAGAAAA
390 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAA
*
160575 ATAGGGCGAAGAAAAGATTTCC
455 ATAGGGCAAAGAAAAGATTTCC
** * * * * *
160597 ATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAAGAATACGCTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * * *
160662 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCAAGAACTTACACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
160727 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * * * * *
160792 AGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAACGAGGATTTCTGAGACTATTCAAGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* * *
160857 TCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGATA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* ** **
160922 TTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAG
326 TCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
*
160986 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
390 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAA
161051 ATAGGGCAAAGAAAAGATTTCC
455 ATAGGGCAAAGAAAAGATTTCC
*
161073 ATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
161138 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
161203 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* *
161268 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGATGATTTGTGAGACTAATCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
** * * *
161333 TCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTTTTTTACGAC
261 TCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * * * *
161397 ACCAAAGTGTCAATG-T-CATATACCGTAATGAAAGGAATTTGTTTTTAGTTCCCAATGTTGAAA
325 ATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
*
161460 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
161525 AAATAGGGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* ** * * **
161549 ATGCAAAAGAAAATCAT-TA-AT-A-TCGT-GTAAGGAGTGGAGACT--G-TTATGA--GAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGA--GGAGAATAAGTTTAT-ACTGCCT-A
***** * * * * * * ** * *
161604 ATGC-TTGCCTTATTTAAGGA--A-T--TA-AAT--TTGGTTT-TAAGGAAAATAAGGCAAAGAA
62 AT-CACAAAATGAATGAA-GATCATTACTACAATCCAT-GTTTGTCA--CATTTGAGGC-ATGAA
*** ** * ** * **
161659 -A-AGA-TTT-CC---A-T-G-CAAAAGAAAATCATTAATATC-ATTTATCCTAATGAG-AAGAA
121 CATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA-CGA---AACC-AA--AGCATCAA
*** ** * * * * *** * *
161712 TA-CGCT-TAT-GAAACCA-AACCATCAATATGTTTTTGGT-TCTCAATCTTGAAAGGAGTG-GA
179 TATCG-TGTATCCTTATGAGAA-GA-C--TAAGTTTATGGTGCCT-AATCCAAAAAAGAATGAG-
* * * * * * * * **
161771 GA-CTGTTATGA-GAATCAATGCTTGCCTTATTTAAG-GA-ATTAAATTTGGTTTTAAGGAAAAT
237 GATTTG-TGTGACTAATC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCT-ATCAAAA-
* * * * * * * * ** * * * * **** *
161832 AAGG--CAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAA-G
296 ACGGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTTGCGTATCCTTATGA-AAGG
** * * *** * * * * * ** * * * * * **
161894 AATACGCTTATGAAACCAAACCATCAATATCGTGTA-TC-CTTATGGGAAGACTAAGTTTATGGT
360 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAA-TC-AA--TGCT--T
* ** * * * * *** ***
161957 GCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTTG-TCTTA-TTTAAGAGACAA
419 GCCTTAT---TTAAGGAATTA--ACT--T-TGA-T-TTTAAG---GAAAATAGGGCAA-AGA-AA
*
162020 ACTTTGA-TTCT
469 A----GATTTCC
*
162031 AT-CAAAAACGGTTGGAAGAAATGCTTTTCTTGGGACATCGAAGCATCTATGTTGCGTATCCTAA
1 ATGC-AAAA------G-A-AAAT-C--ATC------CAT------ATC-A--TT---TATCCTAA
* * ** * ** * * * * * *
162095 TGA-AAGGAATGTGTTTTTTGTTCCTAATCTCGAAAA-GAGTGGAGA-CTATTA-TGAGAATCAA
36 GGAGGA-GAATAAGTTTATACTGCCTAATCAC-AAAATGAATGAAGATC-ATTACT-ACAATCCA
* ** ** * * * * * ** ** * *
162156 TGCTTACCTTATTTAAGGAATTAA-ATTTGATTTTAAGAAAAGATTTCCATGCAAAAGAAAAATA
97 TGTTTGTCACATTTGAGGCATGAACA-TAGACTTT-ACCAAA-A-TT-GGTG----GGAAGAA-A
* ** ** ** * * *
162220 GTGCCTAATCACAAAATGAATGAAGAGCATTACTAGA-ATCCATGTTTGTCAC-AATTGAG--GC
152 --GCCT-TTCTTACGA--AACCAA-AGCA-T-C-A-ATAT-C--GTGTATC-CTTA-TGAGAAG-
* * * * * * ****** ** * * * * **
162281 ACGAACTTACACT-TTACCAAAATTGGTGGGAAGAA--AGCCTTTCTTATGAAACCAAACCATCA
201 ACTAAGTT-TA-TGGTGCC-TAA-TCCAAAAAAGAATGAGGATTT-GTGTG--A-CTAATCATGT
* * * ** * * * ** * * **
162343 ATATCGTGTATTCTTATGAGA-GGACTATGTTTATAGTGCCTAATC--TAGAAA-AGAATGAGGA
258 TTGTC-T-TA-T-TTAAGAGACAAACTTTGATTCTA-T-CAAAAACGGTTGAAAGA-AAT--GCT
* * * * * ** * * *
162404 TTTC-TGAGAC-T---A--TTCAA-GTTTGTCTTAT--TTAAGAGACAAATTTTGATTTT--ATC
314 TTTCTTGCGACATCAAAGCGTCAATG-TTG-CGTATCCTTATGAAAGGAA-TGTGTTTTTGGTTC
** * * * * * * **
162457 AAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-TATTA-AAGCGTCAATGTCACGTAT-CC-TAT
376 CCAATC--TTGAAA-AGA-G------TGGAGACTGTTATGAGAATCAATG---C-T-TGCCTTAT
* * ** * ** * * * *
162518 TGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCT
426 T-TAAGGAAT-TAACTTTGATT-TTAA---GGAAAATA--GG-G-C----A-AAGAA--AA-GAT
*
162583 TGCC
473 TTCC
** * * ** * * *** *** * * * *
162587 TTAT-TTAAGGAATGAA-CTTTGATTTTAAGGAAAATAGGGCA-AAGAA-AAGATT-TCCATG-C
1 --ATGCAAAAGAA--AATCATCCATATCATTTATCCTAAGG-AGGAGAATAAGTTTATAC-TGCC
* * ** * * * *
162646 -AA-AAGAAAAT-AATCCATATCATTTATCCTAAGGAGGAGAAT-AAGTTTATACTGCCTAATCA
60 TAATCACAAAATGAATGAAGATCA-TTA--CT-------ACAATCCA-TGT-T--TG-----TCA
* * ** * ** * * * * * *
162707 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAG-GCATGAACATAGACTT
106 C-AT-T---TG-AG-GCATGA--AC-ATAGA-CTTTACCAAAATTG-GTG--GGAAGAAAGCCTT
***** * * * * * * *
162771 TAC-TA--AAATTGGTGGGA-AAAAAGCCT-T-T-C-T-TGCGAA-ACCAAAGCTTCAATATCGT
157 T-CTTACGAAA-CCAAAGCATCAATATCGTGTATCCTTATGAGAAGA-CTAAG-TT---TAT-G-
* * * * * *
162826 GTATCCTTAT-GAGAAGACTAAGTTTATG-GTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGA
213 GT-GCCTAATCCA-AA-A--AAG--AATGAG-G-AT-T------------T---G---TGT--GA
** *
162889 CTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATG
248 CTAATCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATG
* * * * * * * *
162953 CTTCTT-TTACGACACCAAAGTGTCAATG-T-CATATACCGTAACGAAAGGAATTTGTTTTTAGT
312 CTT-TTCTTGCGACATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGT
* * *
163015 TCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAGTTAAA
374 TCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAC
163080 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
439 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* ** * * * * *
163118 ATGCAAAAAAAAATCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAA-GGAGGAGAATAAGTTTATACTGCCTAATC
* * * * * * *
163182 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTAACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * *
163247 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * * *
163312 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTTTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
163377 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* ** **
163442 ATTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
163506 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
163571 AATAGGGCGAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* ** ** *
163594 AAGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAACTTATTTTGCCCAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** * * * *
163659 CAACGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATACACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
** * *
163724 ACCAAAATTGGTATGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * *
163789 AGAAGACTAAGTTTATGGTGCCTACA-ACGAAAAAGAATGAGGATTAGTGTGACTATTCATGTTT
196 AGAAGACTAAGTTTATGGTGCCTA-ATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* *
163853 GTCTTATTTAAGAGAC--ACTTTGATACTATCAAAAACGATTTG-AAGAAATGCTTTTCTTGCGA
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GTTGAAAGAAATGCTTTTCTTGCGA
* * * * *
163915 CATCAAAGCGTCAATGTCGCGTATCC-TACTGAAAAGAATATGTTTTTGGTTCTCAATCATGAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
163979 GGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
* * *
164044 AAGTTGGGCCAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* * *
164068 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGAAGAATACA-TTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATA-AGTTTATACTGCCTAATC
* * * * * * * *
164132 ACAAAATGAATGAATACCTTTACTAGAATCCATGTTTGTCACAATTGAGGCATGAGCTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
164197 TACCAAAATTGGTGGGAAGAAAGCCATTCTTACAAAACCAAACCATCAATATCGTGTATCCTTAA
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * *
164262 GAGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGATTAGTGTGACTACTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
164327 GGCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTTTG-AAGAAATGCTTTTCTTGCGA
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGA
* * * *
164391 CATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * *
164456 GAGTGGAGACTGTTACGGGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGG--
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
164519 AATAAGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* * * * * * ** *
164542 ATGTAACAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATTGTGCCTAATAA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * ** * * * * *
164607 CAAAATGAATGAATG-CCATTACTAGAATCTGTGTTTGTCACAATTGAGGCACGGACTTACACTT
66 CAAAATGAATGAA-GATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
164671 TACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* ** * * * *
164736 GGGAAGACTAAGTTTATGGTGCCTAATCTGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* *
164801 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTACGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * * *
164866 ATCAAAGCATCAATGTTGCATATCCTAATGAAAGGAATATGTTCTTT-GTTCCTAATCTCGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTT-TTTGGTTCCCAATCTTGAAAA
* * * * *
164930 GAGTTGAGACTATTACGAGATTCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
* *
164995 AATAGGACGAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* * ** * * * *
165018 ATGCAAAAAAAAATCATCAATATCATTTATCCTAACAAGAAGAATACGTTTATAGTGCCTAATTA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * * *
165083 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCATAAAC-TTGCATTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAG-ACTT
* * * * * *
165147 TATCGAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA-CTAAGCCATAAATATCGTATATGCTTA
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG-CATCAATATCGTGTATCCTTA
* * * * *
165211 TGAGAAGACTAAGTTTATCGTGCCTAATCCAAAAAAGAATAAGGATTTCTGAGACTATTCATGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* *
165276 TGTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * ** **
165341 TATTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
*
165405 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
165470 AAATAGGGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
*
165494 ATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
165559 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
165624 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
*
165689 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTAATCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* ** * *
165754 TCTTATGTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTCTT-TTACGA
261 TCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTT-TTCTTGCGA
* * * * * * * *
165817 CACCAAAGTGTCAATG-T-CATATACCGTAACGAAAGGAATTTGTTTTTAGTTCCCAATGTTGAA
324 CATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
*
165880 AAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGG
387 AAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGG
165945 AAAATAGGGCAAAGAAAAGATTTCC
452 AAAATAGGGCAAAGAAAAGATTTCC
* ** * * * * *
165970 ATGCAAAAGAAAGTCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAA-GGAGGAGAATAAGTTTATACTGCCTAATC
* * * * * *
166034 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * *
166099 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * * *
166164 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTCTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
166229 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* ** **
166294 ATTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
166358 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
166423 AATAGGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
*
166446 ATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
166511 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
166576 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
*
166641 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTAATCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* ** * *
166706 TCTTATGTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTCTT-TTACGA
261 TCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTT-TTCTTGCGA
* * * * * * * *
166769 CACCAAAGTGTCAATG-T-CATATACCGTAACGAAAGGAATTTGTTTTTAGTTCCCAATGTTGAA
324 CATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
*
166832 AAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGG
387 AAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGG
166897 AAAATAGGGCAAAGAAAAGATTTCC
452 AAAATAGGGCAAAGAAAAGATTTCC
* ** * * * * *
166922 ATGCAAAAGAAAGTCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAA-GGAGGAGAATAAGTTTATACTGCCTAATC
* * * * * *
166986 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * *
167051 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * * *
167116 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTCTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
167181 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* ** **
167246 ATTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
167310 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
167375 AATAGGGCAAAGAAAAGATTTTC
454 AATAGGGCAAAGAAAAGATTTCC
167398 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
167463 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
167528 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * *
167593 AGAAGACTAGGTTTATGGTGCCTAATCCAAAAAAAGAATGAGGATTTATGAGACTAATCATGTTT
196 AGAAGACTAAGTTTATGGTGCCTAATCC-AAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
** * *
167658 GTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTCTT-TTACG
260 GTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTT-TTCTTGCG
* * ** * * * * *
167721 ACACCAAAGTGTCAATG-T-AATATACCGTAACGAAAGGAATTTGTTTTTAGTTCCCAATGTTGA
323 ACATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
** *
167784 AAAGAGTGGAGACTGTTATGAGAATCAATGCTTTTCTTATTTAAGGAATTAAATTTGATTTTAAG
386 AAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAG
167849 GAAAATAGGGCAAAGAAAAGATTTCC
451 GAAAATAGGGCAAAGAAAAGATTTCC
** * * * * *
167875 ATGCAAAAGAAAATCATTAATATTATTTATCCT---------AACACGCTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * * *
167931 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
167996 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * * * * *
168061 AGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAACGAGGATTTCTGAGACTATTCAAGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* * *
168126 TCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGATA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* ** **
168191 TTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAG
326 TCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
*
168255 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
390 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAA
*
168320 ATAGGGCATAGAAAAGATTTCC
455 ATAGGGCAAAGAAAAGATTTCC
*
168342 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAGTAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
168407 CAATGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATGGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * * * *
168472 ACTAAAATTGGTGGGCAGAAAGCCTTCCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * *
168537 AGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAG-ATAAAGGATTAGTATGAC-AATTCATGTT
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAT-GAGGATTTGTGTGACTAA-TCATGTT
* * * * *
168600 TGTCTTGTTTTAGAGACAAACTTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTTTTTTACGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* ** * *
168665 CACCAAAGCGTCAATGTCT-TATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATGTTGAAA
324 CATCAAAGCGTCAATGT-TGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * * *
168729 AGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAA-ATTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
* *
168793 AAGTATGGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* * * *
168817 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGC-GCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATA-CTGCCTAATC
* * * * *
168881 ACAAAATGAATGAAGAGCATTACTAGC-ATCCATGTTTGTCACAATTGAGACATGAACTTACACT
65 ACAAAATGAATGAAGATCATTACTA-CAATCCATGTTTGTCACATTTGAGGCATGAACATAGACT
* * * *
168945 TCACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATCCTTA
129 TTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * * * *
169010 TGGGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGAGTAGTGTGACTACTCAAGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* * *
169075 TGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACAGTTGGAAGAAATGCTTTTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * * * * **
169140 CATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCTAACCTCAAAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
169205 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
169270 AATAAGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
** * * * * *
169293 ATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAAGAATACGTTTATAATGCCTAATAA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * * * * * * *
169358 CAAAATGAATGAATG-CCAATACTAAAATCCGTGTTTGTCTCAATTGAGGCACGAGCTTACACTT
66 CAAAATGAATGAA-GATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
169422 TA-CAAGAATTGGTGGGAAGAAAGCCTTTCTTACGATACCAAACCATCAATATCATGTATCCCTA
130 TACCAA-AATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* ** * * * * * *
169486 TGGGAAGACTAAGTTTATGGCACCTAATTCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* *
169551 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTGTGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * * * * * **
169616 TATCAAAGCATCAATGTTGCGTATCCTAAGGAAAGGAATGTGTTTTTTGTTCCTAATCCCGAAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * * *
169681 GAGTGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGATGTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
169746 AGTTA-GGCAAAGAAAAGATTTCC
454 A-ATAGGGCAAAGAAAAGATTTCC
*
169769 ATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
169834 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
169899 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
*
169964 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTAATCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
** * * *
170029 TCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTTTTTTACGAC
261 TCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * * * * *
170093 ACCAAAGTGTCAATG-T-CATATACCGTAACGAAAGGAATTTGTTTTTAGTTCCCAATGTTGAAA
325 ATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
*
170156 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
170221 AAATAGGGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* ** * * **
170245 ATGCAAAAGAAAATCAT-TA-AT-A-TCGT-GTAAGGAGTGGAGACT--G-TTATGA--GAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGA--GGAGAATAAGTTTAT-ACTGCCT-A
***** * * * * * * ** * *
170300 ATGC-TTGCCTTATTTAAGGA--A-T--TA-AAT--TTGGTTT-TAAGGAAAATAAGGCAAAGAA
62 AT-CACAAAATGAATGAA-GATCATTACTACAATCCAT-GTTTGTCA--CATTTGAGGC-ATGAA
*** ** * ** * **
170355 -A-AGA-TTT-CC---A-T-G-CAAAAGAAAATCATTAATATC-ATTTATCCTAATGAG-AAGAA
121 CATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA-CGA---AACC-AA--AGCATCAA
*** ** * * * * *** * *
170408 TA-CGCT-TAT-GAAACCA-AACCATCAATATGTTTTTGGT-TCTCAATCTTGAAAGGAGTG-GA
179 TATCG-TGTATCCTTATGAGAA-GA-C--TAAGTTTATGGTGCCT-AATCCAAAAAAGAATGAG-
* * * * * * * * **
170467 GA-CTGTTATGA-GAATCAATGCTTGCCTTATTTAAG-GA-ATTAAATTTGGTTTTAAGGAAAAT
237 GATTTG-TGTGACTAATC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCT-ATCAAAA-
* * * * * * * * ** * * * * **** *
170528 AAGG--CAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAA-G
296 ACGGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTTGCGTATCCTTATGA-AAGG
** * * *** * * * * * ** * * * * * **
170590 AATACGCTTATGAAACCAAACCATCAATATCGTGTA-TC-CTTATGGGAAGACTAAGTTTATGGT
360 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAA-TC-AA--TGCT--T
* ** * * * * *** ***
170653 GCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTTG-TCTTA-TTTAAGAGACAA
419 GCCTTAT---TTAAGGAATTA--ACT--T-TGA-T-TTTAAG---GAAAATAGGGCAA-AGA-AA
*
170716 ACTTTGA-TTCT
469 A----GATTTCC
*
170727 AT-CAAAAACGGTTGGAAGAAATGCTTTTCTTGGGACATCGAAGCATCTATGTTGCGTATCCTAA
1 ATGC-AAAA------G-A-AAAT-C--ATC------CAT------ATC-A--TT---TATCCTAA
* * ** * ** * * * * * *
170791 TGA-AAGGAATGTGTTTTTTGTTCCTAATCTCGAAAA-GAGTGGAGA-CTATTA-TGAGAATCAA
36 GGAGGA-GAATAAGTTTATACTGCCTAATCAC-AAAATGAATGAAGATC-ATTACT-ACAATCCA
* ** ** * * * * * ** ** * *
170852 TGCTTACCTTATTTAAGGAATTAA-ATTTGATTTTAAGAAAAGATTTCCATGCAAAAGAAAAATA
97 TGTTTGTCACATTTGAGGCATGAACA-TAGACTTT-ACCAAA-A-TT-GGTG----GGAAGAA-A
* ** ** ** * * *
170916 GTGCCTAATCACAAAATGAATGAAGAGCATTACTAGA-ATCCATGTTTGTCAC-AATTGAG--GC
152 --GCCT-TTCTTACGA--AACCAA-AGCA-T-C-A-ATAT-C--GTGTATC-CTTA-TGAGAAG-
* * * * * * ****** ** * * * * **
170977 ACGAACTTACACT-TTACCAAAATTGGTGGGAAGAA--AGCCTTTCTTATGAAACCAAACCATCA
201 ACTAAGTT-TA-TGGTGCC-TAA-TCCAAAAAAGAATGAGGATTT-GTGTG--A-CTAATCATGT
* * * ** * * * ** * * **
171039 ATATCGTGTATTCTTATGAGA-GGACTATGTTTATAGTGCCTAATC--TAGAAA-AGAATGAGGA
258 TTGTC-T-TA-T-TTAAGAGACAAACTTTGATTCTA-T-CAAAAACGGTTGAAAGA-AAT--GCT
* * * * * ** * * *
171100 TTTC-TGAGAC-T---A--TTCAA-GTTTGTCTTAT--TTAAGAGACAAATTTTGATTTT--ATC
314 TTTCTTGCGACATCAAAGCGTCAATG-TTG-CGTATCCTTATGAAAGGAA-TGTGTTTTTGGTTC
** * * * * * * **
171153 AAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-TATTA-AAGCGTCAATGTCACGTAT-CC-TAT
376 CCAATC--TTGAAA-AGA-G------TGGAGACTGTTATGAGAATCAATG---C-T-TGCCTTAT
* * ** * ** * * * *
171214 TGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCT
426 T-TAAGGAAT-TAACTTTGATT-TTAA---GGAAAATA--GG-G-C----A-AAGAA--AA-GAT
*
171279 TGCC
473 TTCC
** * * ** * * *** *** * * * *
171283 TTAT-TTAAGGAATGAA-CTTTGATTTTAAGGAAAATAGGGCA-AAGAA-AAGATT-TCCATG-C
1 --ATGCAAAAGAA--AATCATCCATATCATTTATCCTAAGG-AGGAGAATAAGTTTATAC-TGCC
* * ** * * * *
171342 -AA-AAGAAAAT-AATCCATATCATTTATCCTAAGGAGGAGAAT-AAGTTTATACTGCCTAATCA
60 TAATCACAAAATGAATGAAGATCA-TTA--CT-------ACAATCCA-TGT-T--TG-----TCA
* * ** * ** * * * * * *
171403 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAG-GCATGAACATAGACTT
106 C-AT-T---TG-AG-GCATGA--AC-ATAGA-CTTTACCAAAATTG-GTG--GGAAGAAAGCCTT
***** * ** * * * *
171467 TAC-TA--AAATTGGTGGGAAGAA-AGCCT-T-T-C-T-TGCGAA-ACCAAAGCTTCAATATCGT
157 T-CTTACGAAA-CCAAAGCATCAATATCGTGTATCCTTATGAGAAGA-CTAAG-TT---TAT-G-
* * * * * *
171522 GTATCCTTAT-GAGAAGACTAAGTTTATG-GTGCCTAATCCAAAAAAGAATGATGATTTGTGAGA
213 GT-GCCTAATCCA-AA-A--AAG--AATGAG-G-AT-T---------------TG---TGT--GA
** *
171585 CTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATG
248 CTAATCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATG
* * * * * * * * *
171649 CTTTTTTTACGACACCAAAGTGTCAATG-T-CATATACCGTAACGAAAGGAATTTGTTTTTAGTT
312 CTTTTCTTGCGACATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTT
* *
171712 CCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAAT
375 CCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACT
171777 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
440 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* ** * * **
171814 ATGCAAAAGAAAATCAT-TA-AT-A-TCGT-GTAAGGAGTGGAGACT--G-TTATGA--GAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGA--GGAGAATAAGTTTAT-ACTGCCT-A
***** * * * * * * ** * *
171869 ATGC-TTGCCTTATTTAAGGA--A-T--TA-AAT--TTGGTTT-TAAGGAAAATAAGGCAAAGAA
62 AT-CACAAAATGAATGAA-GATCATTACTACAATCCAT-GTTTGTCA--CATTTGAGGC-ATGAA
*** ** * ** * **
171924 -A-AGA-TTT-CC---A-T-G-CAAAAGAAAATCATTAATATC-ATTTATCCTAATGAG-AAGAA
121 CATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA-CGA---AACC-AA--AGCATCAA
*** ** * * * * *** * *
171977 TA-CGCT-TAT-GAAACCA-AACCATCAATATGTTTTTGGT-TCTCAATCTTGAAAGGAGTG-GA
179 TATCG-TGTATCCTTATGAGAA-GA-C--TAAGTTTATGGTGCCT-AATCCAAAAAAGAATGAG-
* * * * * * * * **
172036 GA-CTGTTATGA-GAATCAATGCTTGCCTTATTTAAG-GA-ATTAAATTTGGTTTTAAGGAAAAT
237 GATTTG-TGTGACTAATC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCT-ATCAAAA-
* * * * * * * * ** * * * * **** *
172097 AAGG--CAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAA-G
296 ACGGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTTGCGTATCCTTATGA-AAGG
** * * *** * * * * * ** * * * * * **
172159 AATACGCTTATGAAACCAAACCATCAATATCGTGTA-TC-CTTATGGGAAGACTAAGTTTATGGT
360 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAA-TC-AA--TGCT--T
* ** * * * * *** ***
172222 GCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTTG-TCTTA-TTTAAGAGACAA
419 GCCTTAT---TTAAGGAATTA--ACT--T-TGA-T-TTTAAG---GAAAATAGGGCAA-AGA-AA
*
172285 ACTTTGA-TTCT
469 A----GATTTCC
*
172296 AT-CAAAAACGGTTGGAAGAAATGCTTTTCTTGGGACATCGAAGCATCTATGTTGCGTATCCTAA
1 ATGC-AAAA------G-A-AAAT-C--ATC------CAT------ATC-A--TT---TATCCTAA
* * ** * ** * * * * * *
172360 TGA-AAGGAATGTGTTTTTTGTTCCTAATCTCGAAAA-GAGTGGAGA-CTATTA-TGAGAATCAA
36 GGAGGA-GAATAAGTTTATACTGCCTAATCAC-AAAATGAATGAAGATC-ATTACT-ACAATCCA
* ** ** * * * * * ** ** * *
172421 TGCTTACCTTATTTAAGGAATTAA-ATTTGATTTTAAGAAAAGATTTCCATGCAAAAGAAAAATA
97 TGTTTGTCACATTTGAGGCATGAACA-TAGACTTT-ACCAAA-A-TT-GGTG----GGAAGAA-A
* ** ** ** * * *
172485 GTGCCTAATCACAAAATGAATGAAGAGCATTACTAGA-ATCCATGTTTGTCAC-AATTGAG--GC
152 --GCCT-TTCTTACGA--AACCAA-AGCA-T-C-A-ATAT-C--GTGTATC-CTTA-TGAGAAG-
* * * * * * ****** ** * * * * **
172546 ACGAACTTACACT-TTACCAAAATTGGTGGGAAGAA--AGCCTTTCTTATGAAACCAAACCATCA
201 ACTAAGTT-TA-TGGTGCC-TAA-TCCAAAAAAGAATGAGGATTT-GTGTG--A-CTAATCATGT
* * * ** * * * ** * * **
172608 ATATCGTGTATTCTTATGAGA-GGACTATGTTTATAGTGCCTAATC--TAGAAA-AGAATGAGGA
258 TTGTC-T-TA-T-TTAAGAGACAAACTTTGATTCTA-T-CAAAAACGGTTGAAAGA-AAT--GCT
* * * * * ** * * *
172669 TTTC-TGAGAC-T---A--TTCAA-GTTTGTCTTAT--TTAAGAGACAAATTTTGATTTT--ATC
314 TTTCTTGCGACATCAAAGCGTCAATG-TTG-CGTATCCTTATGAAAGGAA-TGTGTTTTTGGTTC
** * * * * * * **
172722 AAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-TATTA-AAGCGTCAATGTCACGTAT-CC-TAT
376 CCAATC--TTGAAA-AGA-G------TGGAGACTGTTATGAGAATCAATG---C-T-TGCCTTAT
* * ** * ** * * * *
172783 TGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCT
426 T-TAAGGAAT-TAACTTTGATT-TTAA---GGAAAATA--GG-G-C----A-AAGAA--AA-GAT
*
172848 TGCC
473 TTCC
** * * ** * * *** *** * * * *
172852 TTAT-TTAAGGAATGAA-CTTTGATTTTAAGGAAAATAGGGCA-AAGAA-AAGATT-TCCATG-C
1 --ATGCAAAAGAA--AATCATCCATATCATTTATCCTAAGG-AGGAGAATAAGTTTATAC-TGCC
* * ** * * * *
172911 -AA-AAGAAAAT-AATCCATATCATTTATCCTAAGGAGGAGAAT-AAGTTTATACTGCCTAATCA
60 TAATCACAAAATGAATGAAGATCA-TTA--CT-------ACAATCCA-TGT-T--TG-----TCA
* * ** * ** * * * * * *
172972 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAG-GCATGAACATAGACTT
106 C-AT-T---TG-AG-GCATGA--AC-ATAGA-CTTTACCAAAATTG-GTG--GGAAGAAAGCCTT
***** * ** * * * *
173036 TAC-TA--AAATTGGTGGGAAGAA-AGCCT-T-T-C-T-TGCGAA-ACCAAAGCTTCAATATCGT
157 T-CTTACGAAA-CCAAAGCATCAATATCGTGTATCCTTATGAGAAGA-CTAAG-TT---TAT-G-
* * * * * *
173091 GTATCCTTAT-GAGAAGACTAAGTTTATG-GTGCCTAATCCAAAAAAGAATGATGATTTGTGAGA
213 GT-GCCTAATCCA-AA-A--AAG--AATGAG-G-AT-T---------------TG---TGT--GA
** *
173154 CTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATG
248 CTAATCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATG
* * * * * * * * *
173218 CTTTTTTTACGACACCAAAGTGTCAATG-T-CATATACCGTAACGAAAGGAATTTGTTTTTAGTT
312 CTTTTCTTGCGACATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTT
* *
173281 CCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAAT
375 CCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACT
173346 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
440 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* ** * * **
173383 ATGCAAAAGAAAATCAT-TA-AT-A-TCGT-GTAAGGAGTGGAGACT--G-TTATGA--GAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGA--GGAGAATAAGTTTAT-ACTGCCT-A
***** * * * * * * ** * *
173438 ATGC-TTGCCTTATTTAAGGA--A-T--TA-AAT--TTGGTTT-TAAGGAAAATAAGGCAAAGAA
62 AT-CACAAAATGAATGAA-GATCATTACTACAATCCAT-GTTTGTCA--CATTTGAGGC-ATGAA
*** ** * ** * **
173493 -A-AGA-TTT-CC---A-T-G-CAAAAGAAAATCATTAATATC-ATTTATCCTAATGAG-AAGAA
121 CATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA-CGA---AACC-AA--AGCATCAA
*** ** * * * * *** * *
173546 TA-CGCT-TAT-GAAACCA-AACCATCAATATGTTTTTGGT-TCTCAATCTTGAAAGGAGTG-GA
179 TATCG-TGTATCCTTATGAGAA-GA-C--TAAGTTTATGGTGCCT-AATCCAAAAAAGAATGAG-
* * * * * * * * **
173605 GA-CTGTTATGA-GAATCAATGCTTGCCTTATTTAAG-GA-ATTAAATTTGGTTTTAAGGAAAAT
237 GATTTG-TGTGACTAATC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCT-ATCAAAA-
* * * * * * * * ** * * * * **** *
173666 AAGG--CAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAA-G
296 ACGGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTTGCGTATCCTTATGA-AAGG
** * * *** * * * * * ** * * * * * **
173728 AATACGCTTATGAAACCAAACCATCAATATCGTGTA-TC-CTTATGGGAAGACTAAGTTTATGGT
360 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAA-TC-AA--TGCT--T
* ** * * * * *** ***
173791 GCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTTG-TCTTA-TTTAAGAGACAA
419 GCCTTAT---TTAAGGAATTA--ACT--T-TGA-T-TTTAAG---GAAAATAGGGCAA-AGA-AA
*
173854 ACTTTGA-TTCT
469 A----GATTTCC
*
173865 AT-CAAAAACGGTTGGAAGAAATGCTTTTCTTGGGACATCGAAGCATCTATGTTGCGTATCCTAA
1 ATGC-AAAA------G-A-AAAT-C--ATC------CAT------ATC-A--TT---TATCCTAA
* * ** * ** * * * * * *
173929 TGA-AAGGAATGTGTTTTTTGTTCCTAATCTCGAAAA-GAGTGGAGA-CTATTA-TGAGAATCAA
36 GGAGGA-GAATAAGTTTATACTGCCTAATCAC-AAAATGAATGAAGATC-ATTACT-ACAATCCA
* ** ** * * * * * ** ** * *
173990 TGCTTACCTTATTTAAGGAATTAA-ATTTGATTTTAAGAAAAGATTTCCATGCAAAAGAAAAATA
97 TGTTTGTCACATTTGAGGCATGAACA-TAGACTTT-ACCAAA-A-TT-GGTG----GGAAGAA-A
* ** ** ** * * *
174054 GTGCCTAATCACAAAATGAATGAAGAGCATTACTAGA-ATCCATGTTTGTCAC-AATTGAG--GC
152 --GCCT-TTCTTACGA--AACCAA-AGCA-T-C-A-ATAT-C--GTGTATC-CTTA-TGAGAAG-
* * * * * * ****** ** * * * * **
174115 ACGAACTTACACT-TTACCAAAATTGGTGGGAAGAA--AGCCTTTCTTATGAAACCAAACCATCA
201 ACTAAGTT-TA-TGGTGCC-TAA-TCCAAAAAAGAATGAGGATTT-GTGTG--A-CTAATCATGT
* * * ** * * * ** * * **
174177 ATATCGTGTATTCTTATGAGA-GGACTATGTTTATAGTGCCTAATC--TAGAAA-AGAATGAGGA
258 TTGTC-T-TA-T-TTAAGAGACAAACTTTGATTCTA-T-CAAAAACGGTTGAAAGA-AAT--GCT
* * * * * ** * * *
174238 TTTC-TGAGAC-T---A--TTCAA-GTTTGTCTTAT--TTAAGAGACAAATTTTGATTTT--ATC
314 TTTCTTGCGACATCAAAGCGTCAATG-TTG-CGTATCCTTATGAAAGGAA-TGTGTTTTTGGTTC
** * * * * * * **
174291 AAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-TATTA-AAGCGTCAATGTCACGTAT-CC-TAT
376 CCAATC--TTGAAA-AGA-G------TGGAGACTGTTATGAGAATCAATG---C-T-TGCCTTAT
* * ** * ** * * * *
174352 TGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCT
426 T-TAAGGAAT-TAACTTTGATT-TTAA---GGAAAATA--GG-G-C----A-AAGAA--AA-GAT
*
174417 TGCC
473 TTCC
** * * ** * * *** *** * * * *
174421 TTAT-TTAAGGAATGAA-CTTTGATTTTAAGGAAAATAGGGCA-AAGAA-AAGATT-TCCATG-C
1 --ATGCAAAAGAA--AATCATCCATATCATTTATCCTAAGG-AGGAGAATAAGTTTATAC-TGCC
* * ** * * * *
174480 -AA-AAGAAAAT-AATCCATATCATTTATCCTAAGGAGGAGAAT-AAGTTTATACTGCCTAATCA
60 TAATCACAAAATGAATGAAGATCA-TTA--CT-------ACAATCCA-TGT-T--TG-----TCA
* * ** * ** * * * * * *
174541 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAG-GCATGAACATAGACTT
106 C-AT-T---TG-AG-GCATGA--AC-ATAGA-CTTTACCAAAATTG-GTG--GGAAGAAAGCCTT
***** * * * * * * *
174605 TAC-TA--AAATTGGTGGGA-AAAAAGCCT-T-T-C-T-TGCGAA-ACCAAAGCTTCAATATCGT
157 T-CTTACGAAA-CCAAAGCATCAATATCGTGTATCCTTATGAGAAGA-CTAAG-TT---TAT-G-
* * * * * *
174660 GTATCCTTAT-GAGAAGACTAAGTTTATG-GTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGA
213 GT-GCCTAATCCA-AA-A--AAG--AATGAG-G-AT-T------------T---G---TGT--GA
** *
174723 CTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATG
248 CTAATCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATG
* * * * * * * *
174787 CTTCTT-TTACGACACCAAAGTGTCAATG-T-CATATACCGTAACGAAAGGAATTTGTTTTTAGT
312 CTT-TTCTTGCGACATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGT
* * *
174849 TCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAGTTAAA
374 TCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAC
174914 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
439 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* ** * * * * *
174952 ATGCAAAAAAAAATCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAA-GGAGGAGAATAAGTTTATACTGCCTAATC
* * * * * * *
175016 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTAACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * *
175081 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * * *
175146 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTTTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
175211 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* ** **
175276 ATTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
175340 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
175405 AATAGGGCGAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* ** ** *
175428 AAGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAACTTATTTTGCCCAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** * * * *
175493 CAACGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATACACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
** * *
175558 ACCAAAATTGGTATGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * *
175623 AGAAGACTAAGTTTATGGTGCCTACA-ACGAAAAAGAATGAGGATTAGTGTGACTATTCATGTTT
196 AGAAGACTAAGTTTATGGTGCCTA-ATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* *
175687 GTCTTATTTAAGAGAC--ACTTTGATACTATCAAAAACGATTTG-AAGAAATGCTTTTCTTGCGA
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GTTGAAAGAAATGCTTTTCTTGCGA
* * * * *
175749 CATCAAAGCGTCAATGTCGCGTATCC-TACTGAAAAGAATATGTTTTTGGTTCTCAATCATGAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
175813 GGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
* * *
175878 AAGTTGGGCCAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* * *
175902 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGAAGAATACA-TTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATA-AGTTTATACTGCCTAATC
* * * * * * * *
175966 ACAAAATGAATGAATACCTTTACTAGAATCCATGTTTGTCACAATTGAGGCATGAGCTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
176031 TACCAAAATTGGTGGGAAGAAAGCCATTCTTACAAAACCAAACCATCAATATCGTGTATCCTTAA
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * *
176096 GAGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGATTAGTGTGACTACTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
176161 GGCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTTTG-AAGAAATGCTTTTCTTGCGA
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGA
* * * *
176225 CATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * *
176290 GAGTGGAGACTGTTACGGGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGG--
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
176353 AATAAGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* * * * * * ** *
176376 ATGTAACAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATTGTGCCTAATAA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * ** * * * * *
176441 CAAAATGAATGAATG-CCATTACTAGAATCTGTGTTTGTCACAATTGAGGCACGGACTTACACTT
66 CAAAATGAATGAA-GATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
176505 TACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* ** * * * *
176570 GGGAAGACTAAGTTTATGGTGCCTAATCTGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* *
176635 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTACGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * * *
176700 ATCAAAGCATCAATGTTGCATATCCTAATGAAAGGAATATGTTCTTT-GTTCCTAATCTCGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTT-TTTGGTTCCCAATCTTGAAAA
* * * * *
176764 GAGTTGAGACTATTACGAGATTCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
* *
176829 AATAGGACGAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* * ** * * *
176852 ATGCAAAAAAAAATCATCAATATCATTTATCCTAACAAGAAGAATACGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * * *
176917 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCATAAAC-TTGCATTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAG-ACTT
* * * * * *
176981 TATCGAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA-CTAAGCCATAAATATCGTATATGCTTA
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG-CATCAATATCGTGTATCCTTA
* * * * *
177045 TGAGAAGACTAAGTTTATCGTGCCTAATCCAAAAAAGAATAAGGATTTCTGAGACTATTCATGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* *
177110 TGTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * ** **
177175 TATTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
*
177239 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
177304 AAATAGGGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
*
177328 ATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
177393 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
177458 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
*
177523 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTAATCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* ** * *
177588 TCTTATGTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTCTT-TTACGA
261 TCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTT-TTCTTGCGA
* * * * * * * *
177651 CACCAAAGTGTCAATG-T-CATATACCGTAACGAAAGGAATTTGTTTTTAGTTCCCAATGTTGAA
324 CATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
*
177714 AAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGG
387 AAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGG
177779 AAAATAGGGCAAAGAAAAGATTTCC
452 AAAATAGGGCAAAGAAAAGATTTCC
* ** * * * * *
177804 ATGCAAAAGAAAGTCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAA-GGAGGAGAATAAGTTTATACTGCCTAATC
* * * * * *
177868 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * *
177933 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * * *
177998 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTCTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
178063 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* ** **
178128 ATTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
178192 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
178257 AATAGGGCAAAGAAAAGATTTTC
454 AATAGGGCAAAGAAAAGATTTCC
178280 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
178345 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * *
178410 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * *
178475 AGAAGACTAGGTTTATGGTGCCTAATCCAAAAAAAGAATGAGGATTTATGAGACTAATCATGTTT
196 AGAAGACTAAGTTTATGGTGCCTAATCC-AAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
** * *
178540 GTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTCTT-TTACG
260 GTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTT-TTCTTGCG
* * ** * * * * *
178603 ACACCAAAGTGTCAATG-T-AATATACCGTAACGAAAGGAATTTGTTTTTAGTTCCCAATGTTGA
323 ACATCAAAGCGTCAATGTTGCGTAT-CC-TTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
** *
178666 AAAGAGTGGAGACTGTTATGAGAATCAATGCTTTTCTTATTTAAGGAATTAAATTTGATTTTAAG
386 AAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAG
178731 GAAAATAGGGCAAAGAAAAGATTTCC
451 GAAAATAGGGCAAAGAAAAGATTTCC
** * * * * * *
178757 ATGCAAAAGAAAATCATTAATATTATTTATCCTAATGG-GAAGAACACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAA-GGAGGAGAATAAGTTTATACTGCCTAATC
* * * * * *
178821 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * *
178886 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * * * * *
178951 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAACGAGGATTTCTGAGACTATTCAAGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
179016 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* ** **
179081 ATTAAAGCGTCAATGTCACGTATCC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
179145 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
179210 AATAGGGCATAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
*
179233 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAGTAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
** *
179298 CAATGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATGGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * * * *
179363 ACTAAAATTGGTGGGCAGAAAGCCTTCCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * *
179428 AGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAG-ATAAAGGATTAGTATGAC-AATTCATGTT
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAAT-GAGGATTTGTGTGACTAA-TCATGTT
* * * * *
179491 TGTCTTGTTTTAGAGACAAACTTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTTTTTTACGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * ** * *
179556 CACCAAAGCATCAATGTCT-TATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATGTTGAAA
324 CATCAAAGCGTCAATGT-TGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * * *
179620 AGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAA-ATTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
* *
179684 AAGTATGGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* * * *
179708 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGC-GCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATA-CTGCCTAATC
* * * * *
179772 ACAAAATGAATGAAGAGCATTACTAGC-ATCCATGTTTGTCACAATTGAGACATGAACTTACACT
65 ACAAAATGAATGAAGATCATTACTA-CAATCCATGTTTGTCACATTTGAGGCATGAACATAGACT
* * * *
179836 TCACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATCCTTA
129 TTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * * * *
179901 TGGGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGAGTAGTGTGACTACTCAAGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* * *
179966 TGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACAGTTGGAAGAAATGCTTTTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * * * * **
180031 CATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCTAACCTCAAAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
180096 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
180161 AATAAGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
** * * * * *
180184 ATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAAGAATACGTTTATAATGCCTAATAA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * * * * * * *
180249 CAAAATGAATGAATG-CCAATACTAAAATCCGTGTTTGTCTCAATTGAGGCACGAGCTTACACTT
66 CAAAATGAATGAA-GATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
180313 TA-CAAGAATTGGTGGGAAGAAAGCCTTTCTTACGATACCAAACCATCAATATCATGTATCCCTA
130 TACCAA-AATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* ** * * * * * *
180377 TGGGAAGACTAAGTTTATGGCACCTAATTCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* *
180442 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTGTGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * * * * * **
180507 TATCAAAGCATCAATGTTGCGTATCCTAAGGAAAGGAATGTGTTTTTTGTTCCTAATCCCGAAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * * *
180572 GAGTGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGATGTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
* *
180637 AGTTGGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* * *
180660 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGAAGAATACA-TTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATA-AGTTTATACTGCCTAATC
* * * * * * * *
180724 ACAAAATGAATGAATACCTTTACTAGAATCCATGTTTGTCACAATTGAGGCATGAGCTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
180789 TACCAAAATTGGTGGGAAGAAAGCCATTCTTACAAAACCAAACCATCAATATCGTGTATCCTTAA
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * *
180854 GAGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGATTAGTGTGACTACTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* * *
180919 GGCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTTTG-AAGAAATGCTTTTCTTGCGA
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGA
* * * *
180983 CATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * *
181048 GAGTGGAGACTGTTACGGGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGG--
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
*
181111 AATAAGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* * * * * * * *
181134 ATGTAACAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTAATAA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * ** * * * * * *
181199 CAAAATGAATGAATG-CCATTACTAGAATCTGTGTTTGTCACAATTGAGGCACGGACTTACACTA
66 CAAAATGAATGAA-GATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
181263 TACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * * *
181328 GGGAAGACTAAGTTTATGGTGCCTAAAT-CGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTT
195 GAGAAGACTAAGTTTATGGTGCCT-AATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
*
181392 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * * * *
181457 CATCGAAGCATCAATGTCGCGTATCC-TATTGAAAGGAATGTGTTTTTGATTCCCAACCTTGAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * * *
181521 AGTA-TGGAGATTGTTATGAGAATCAGTGCTTGCCTTATTTAAAGAATGAACTTTGATTTTAAGG
388 AG-AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGG
*
181585 AAAATAGTGCAAAGAAAAGATTTCC
452 AAAATAGGGCAAAGAAAAGATTTCC
181610 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
*** *
181675 CAACGCGAATGAGGATCATTACTACAATCCATG--TGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * * * *
181738 ACCAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAATCTTCAATATTGTGTATCCTTATA
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * * ** *
181803 AGAAAACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGATTCTATCAAAAAAGG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTG--T-GA-CTAATCATG
* * * * * ** * * ** ***
181868 TTGGAAGAAATACTTTTCTTACGACATCAAAGCATCAATGT-T-GCATATCCTAATGAAAGGAAT
257 TT---TG---T-CTTAT-TTAAGAGA-CAAA-CTTTGAT-TCTATCAAAAACGGTTGAAA-GAA-
* * * * * ** * * * * ***
181931 ATGTTCTTTGTTCCTA-ATC---TCGAAAAGAGTTGAG-A-CTATTACGAGATTCAATGCTTGCC
309 ATGCT-TTTCTTGCGACATCAAAGCGTCAA-TGTTGCGTATC-CTTATGA-AAGGAATG--TG--
* **** * * * * * * *
181990 TTATTTAAGGAATT--AAAT-TTGATTTTA-AGGAAAATAG-GACGAAGAA--AA-GATTTCCAT
366 TT-TTT--GG--TTCCCAATCTTGAAAAGAGTGGAGACT-GTTATG-AGAATCAATGCTTGCC-T
* ** ** * * *** * * **
182047 GCA-AAAAAAAATCATCAA-TATCA-TTTATCCTAACA-A--G--AAGAATACG-TTTAT
423 -TATTTAAGGAAT--T-AACTTTGATTTTA-AGGAAAATAGGGCAAAGAA-AAGATTTCC
* * * ** * * ** * * * **
182098 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC-ATGTTTGTCATAATTGAGGCAT
1 A-TG-C-AA-AAGAAAAT-CATCCATATCATT--T---ATCCTAAG-GAG-GAGAA-T-AAGTTT
* * * * * * * * * *
182162 AAACTTGCATTTTATC-GAAATTG-GTGGGAAGAAAGCCTTTCTTACGAAACTAAGCCATAAATA
52 ATAC-TGC--CTAATCACAAAATGAAT--GAAG--ATCATTAC-TAC--AA-T---CCAT--GT-
* * * * * ** ****** **
182225 TCGT-ATATGCTT-ATG-A-GAAGACTA-AGTTTATCGTGCCTAA-TCCAAAAAAGAATAAGGAT
100 TTGTCACAT--TTGAGGCATGAACA-TAGACTTTA-C---CAAAATTGGTGGGAAG-A-AAGCCT
* ** * * * *
182284 TTCTGT--G--A-CTATTCAT--GT-TTGCT-TAT--TTA--AG-AGACAAACTTTAAT--T--C
156 TTCT-TACGAAACCAAAGCATCAATATCG-TGTATCCTTATGAGAAGACTAAGTTT-ATGGTGCC
* * ** * * * * *** *
182331 T-AT-CGAAAATGGTTGAAAGAAATGCTTTTCTTGCAACATTAAAGCATCAATGTCGTGTATCCT
218 TAATCCAAAAAAGAATG--AG-GAT--TTGT-GTG--AC--T-AATCATGTTTGTC-T-TAT-TT
* * ** * * * ** * * ** *** * *
182394 ATTGAAAGGAA-TGTGTTTTTGATTCCCAATC--TCGAAA-AGTGTGGAGATTGTTAG-GAGAAT
269 A-AGAGACAAACTTTGATTCT-A-TCAAAAACGGTTGAAAGA-AAT-GCTTTTCTT-GCGA-CAT
* * * * * * * ****** ** *
182454 C--A--GT---GGTTGCCTTAT--TTAAGGAATGAACTTTGATTTT-AAAGAAAATAGTGCAAAG
327 CAAAGCGTCAATGTTG-CGTATCCTTATGAAAGGAA-TGTGTTTTTGGTTCCCAATCTTGAAAAG
*** ** ** * * * * * * *
182509 AAAAGATTTCCATGCAAAAGAAAATC-ATCCATAT-CATTTATCCTAAGGAGGA-GAA-TATG-T
390 AGTGGA--GAC-TG-TTATGAGAATCAATGC-T-TGC-CTTAT-TTAAGGA--ATTAACTTTGAT
* *** * * * *
182569 TTATACTGCCCAATCA---AAAAGTGAATGATGGT-C
445 TT-TA-AGGAAAAT-AGGGCAAAG-AAAAGAT-TTCC
** * * ** * * *
182602 --GCCACTAG---A--ATCCATGT--TTGTCA-CATTTGTG-GCACG-A-ACG--TAGACT---T
1 ATG-CAAAAGAAAATCATCCATATCATT-T-ATCCTAAG-GAGGA-GAATAAGTTTATACTGCCT
* * * * * * *
182649 CA-C-CAAAATTG-GTGGGAAGAAAGCATTTCTTACAAAACCAAAGCATCAACATCGTGT-ATGA
61 AATCACAAAA-TGAAT--GAAG--ATCATTAC-TAC-AATCC-ATG--T-----T--TGTCA-CA
* *** * * * * * *
182710 TTGTGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAATGAATGAGGATTAGTGTAACTA-CTCA
108 TT-TGAG--G-C-ATGAACATAG-ACTTTA-CCAAAATTG-GTG-GGA--A--G-AA--AGC-C-
** *** * * * * * * *
182774 TGTT-TGT-CTTATTTAAGAG-A-CAA-A-C-TTTGATTC-TATCA-AA-AAT-GGTTGAAAGAA
155 T-TTCT-TACGAAACCAA-AGCATCAATATCGTGT-ATCCTTATGAGAAGACTAAGTT-TATG--
* * * * ** *** * ** **
182828 ATACTTTTGAGGCATGAACGTGAATGAAGA-TCAT-T-ACTACAATCCATG--TGTCACATTT--
213 GTGC--CTAATCCA--AAAAAGAATGAGGATTTGTGTGACT--AAT-CATGTTTGTCTTATTTAA
* * * * ** * * * *
182886 GAGGCATGAACGTAGACTT-TACCAAAATTGG-TGAGAA-AAAAGCCTTTCTTACGTA-ACCAAA
271 GAGACA--AACTTTGA-TTCTATCAAAAACGGTTGA-AAGAAATGCTTTTCTTGCG-ACATCAAA
* * * * ** * * * * * *
182947 GCTTGAATATTGTGTATCCTTATGAGAA--AACTAAGTTTATGGTGCCTAATCCTAAAAAGAAT-
331 GCGTCAATGTTGCGTATCCTTATGA-AAGGAA-TGTGTTTTTGGTTCCCAATCTTGAAAAGAGTG
* * * * * * *
183009 GAGGATTAG-GATGACAATTC-ATGTTTGTCTTATGTT-A-GAGATAAACTTTGATTCTGTCA--
394 GA-GACT-GTTATGAGAA-TCAATGCTTGCCTTAT-TTAAGGA-ATTAACTTTGATT-T-TAAGG
* * * **
183068 AAAA-CGGTTG-AAAGAAATGCTTTTT
452 AAAATAGG--GCAAAGAAAAGATTTCC
* * ** * * * * * * * ** * ** * *
183093 TTACAACACCAAAGT-GTCAATGTCATATATCCTAACGA-AAGGAATGTGTTTTTGGTTCCCAAT
1 ATGCAA-AAGAAAATCATCCATATCATTTATCCTAAGGAGGA-GAATAAGTTTATACTGCCTAAT
*** * * * * * * * * ** * * * *
183156 GTTGAAAA-GAGTGGAGA-CTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAA-TTTGA
64 -CACAAAATGAATGAAGATC-ATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGA
* ** ** * * * * ** * * *
183218 TTTTAAGGAAAATAT-G-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTA
127 CTTT-ACCAAAAT-TGGTGGGAAG-AAAGCCTTT-CTTACGAAACCAAAGCATCAATATCGTGTA
* ** * ** * * ***
183280 TCC-TAGTGAGAAGAATACCTTTATAGTGCCTAATCTGAAAATGAATGAAGA-CCAT-T-ACTAG
188 TCCTTA-TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACT--
* ** * * * ** * ** * *
183341 AATCCATGTTTATCACAATTGAG-GCACGAACTTACACTT-TACCAAAATTGGTGGGAAGAAA-G
250 AAT-CATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAACGGTTGAAAGAAATG
* * * * ** * * * * * ** * *
183403 CCTTTCTTACGAAACCAACCCATCAATATCGTGTATCCTTATGAGAA-GACTAAGTTTATGGTGC
312 CTTTTCTTGCGACATCAAAGCGTCAATGTTGCGTATCCTTATGA-AAGGAATGTGTTTTTGGTTC
* * * * * *
183467 CTAATC-CGAAAA-A--GGATGA-GGATTAGTGTGACTACTC-ATGTTTGGCTTATTTAAGAGAC
376 CCAATCTTGAAAAGAGTGGA-GACTG-TTA-TGAGA--A-TCAATGCTTGCCTTATTTAAG-GA-
* * ** * * * * *
183526 A--AACTTCGATTCT-ATCAAAA-ACGGCTGGAAGAAATGCTTTTC
433 ATTAACTTTGATTTTAAGGAAAATAGGGC--AAAGAAAAGATTTCC
* * * ** *** * * **** * * ** * ** * *
183568 TTGCGACATCAAAGGGTCAATGTTGCGTATCCTAATGA-AAGGAATGTGTTTTTTGTTCCCAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGA-GAATAAGTTTATACTGCCTAATC
** * * * * * * * ** * * * * *
183632 TTGAAAA-GAGTGGAGA-CTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGAT-AAAATTGAT
65 -ACAAAATGAATGAAGATC-ATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGAC
*** * * * * * * ** * * * *
183694 TTTAAGGAAAGTAG-GGGAAGGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTTTC
128 TTTACCAAAATTGGTGGGAA-G-AAAGCCTTT-CTTACGAAACCAAAGCATCAATATCGTGTATC
* * * * * * * ** *
183757 CTAAAGAGAAGAATACGTTTATAGTGCCTAAT-CACAAAATGAATGAAGA---GCATTACTAGAA
190 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCA-AAAAAGAATGAGGATTTGTGTGACT--AA
** * * ** * * *
183818 TCCATGTTTGTCACAATTGAG-GCACAAACTTACACTT-TA-CAAGAATGG-T----G-TAT-C-
252 T-CATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAACGGTTGAAAGAAATGCT
* * * * * ** *** * ** *
183872 CTT-ATGGGA-AGACTAA--GTTTATGGCACCTAATCCAAAAAAGAATGAGGACTAGTGTGACTA
314 TTTCTTGCGACA-TCAAAGCGTCAATGTTGCGT-ATCC--TTATGAA--AGGA--A-TGTG--T-
* ** * *** * * *** ** * **
183933 CTCAGGTT--C-ATCTT-ATTTAAGAGACAAG-CTCTGAT-TCTATCAAAAAC--G--GT-TGGA
367 TTTTGGTTCCCAATCTTGA--AAAGAGTGGAGACTGTTATGAGAATC-AATGCTTGCCTTATTTA
* * * * * * * *
183987 A-GAAAT-GCTTT--TCTT-ACG-ACAT----CAAAGCATCAATG-TTGCGT
429 AGGAATTAACTTTGATTTTAAGGAAAATAGGGCAAAG-A--AAAGATTTC-C
* * * * *** * ** * * * * *
184028 ATCCTAATGAAAGGAAT-GTGTTTTTTGTTCCTAACCTCAAAAAGAGTGGGGAT-TGTTATGAGA
1 ATGCAAAAG-AA--AATCATCCATATCATT--TATCCT---AAGGAG-GAGAATAAGTT-T----
* * ** * *** * * * ** * * * *** ** *
184091 ATCAATGCTTCCCTTATTTAAGGAATTAAATTTGAT-TTTAAGGAAAAT-AAGGCAAAGAAAAGA
52 AT-ACTGCCT-AATCACAAAATGAA-TGAA---GATCATT-ACTACAATCCATG-TTTG-TCACA
* * ** * * * ** * ** ** * **
184154 TTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGTGCCT
108 TTT-GAGGCATGAACATA-GA-CTTTACCA-AAAT--TGGTGGGAAGAA-A-GCCT-T--T--CT
* ** * * * *
184219 AATAACAAAATGAATGAAGACCATTACTAGA-ATCCATGTTTATCAC-AATTGAG--GCACGAAC
160 --T-ACGAAA-CCA--AAG--CA-T-C-A-ATAT-C--GTGTATC-CTTA-TGAGAAG-ACTAAG
* * * * ****** ** * * * *** *
184280 TTACACT-TTACCAAAATTGGTGGGAAGAA--AGCCTTTCT-TACGAAACCAAACCATCAATATC
207 TT-TA-TGGTGCC-TAA-TCCAAAAAAGAATGAGGATTTGTGT--G--A-CTAATCATGTTTGTC
* * * **
184341 GTGTATCCTTATGGGAAGACCAAGTTT-ATGGTGCCTAATCCGAAAAA-GAATGAGGATTTGAGA
263 -T-TAT--TTA--AG-AGACAAACTTTGAT--T--CT-AT-C-AAAAACGGTTGA--A----AGA
** * * * * *
184404 AATGCTTTTCTTATGACAACAAAGCATCAATATTGCGTATCCTAATAAAAGGAATGTGTTTTTGG
308 AATGCTTTTCTTGCGACATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGG
* * *
184469 TTCCTAATCTCGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAA
373 TTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAA
* * * * * *
184534 ATATTG-TTTTAAGGAAACTATGTCAAAAAAAAGATTTTC
438 CT-TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * *
184573 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTAA-CA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATC-
* * * * * * * * *
184637 ACAAAATGAATGAATG-CCAATACTAGAATCCGTGTTTGTCTCAATTGAGGCACGAACTTACACT
65 ACAAAATGAATGAA-GATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACT
* *
184701 TTA-CAAGAATTGGTGGGAAGAAAGCCTTTCTTACGATACCAAACCATCAATATCGTGTATCCTT
129 TTACCAA-AATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTT
* * * * * *
184765 ATGGGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGT
193 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGT
* *
184830 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTGGCG
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * * * **
184895 ACATCAAAGCATCAATGTTGCGTATCCTAAGGAAAGGAATGTGTTTTTTGTTCCTAATCCCGAAA
323 ACATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * * *
184960 AGAGTGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
*
185025 AAATTGGGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* * * *
185049 ATGCAAAAGAAAATCATCCATATCATTTATCCTAACGAGAAGAATACGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * * * * *
185114 CAAAATGAATGAATACCCTTACTAGAATCCATGTTTGTCACAATTGAGGTATGAACTTACACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* *
185179 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGATACCAAACCATCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* ** ** * * * *
185244 GGAAGACTAAGTTTATGGCACCTAATCTGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* * *
185309 TCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTTGGAAGAAATGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* * * * * **
185374 TCAAAGCATCAATGTTGCATATCCTAAGGAAAGGAATGTGTTTTTTG-TCCCTAATCCCGAAAAG
326 TCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCC-AATCTTGAAAAG
* ** * * *
185438 AGTGGAGACTATTACAAGAATCAATGCTTACTTTATTTAAGGAATTAAATTTGATTTTAAGGAAA
390 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAA
* *
185503 ATTGGGCAAAGAAAAGATTTTC
455 ATAGGGCAAAGAAAAGATTTCC
* * * **
185525 ATGCAAAAGAAAATCATCCATATCATTTATCCTAACGAGAAGAATACGTTTATTGTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
* * * * * * * *
185590 CAAAATGAATGAATACCTTTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * * *
185655 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCTTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * **
185720 GGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAACTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
* *
185785 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATTGGAAGAAATGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* * * * ** *
185850 TCAAAGCATCAATGTTACGTATCCTAATGAAAGGAATGTGTTTTTTGTTCGTAATCTCGAAAAGA
326 TCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * * *
185915 GTAGAGACTATTACGAGAATCAGTGCTTGCCTTATTTAAGGAATTAAATTAGATTTTAAGGAAAA
391 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAAA
**
185980 TAGGGTGAAGAAAAGATTTCC
456 TAGGGCAAAGAAAAGATTTCC
* * * * * *
186001 ATGCAAAAGAAATTCATCAATATCATTTATCCTAA-CAGGAAGAATACGTTTGTAATGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGG-AGAATAAGTTTATACTGCCTAATC
* * * * ** * *
186065 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGATGCACAAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * *
186130 TA-CAAGAA-TGGTGAGAAGAAAGCCTTTCTTACGATACCAAACCATCAATATCGTGTATCCTTA
130 TACCAA-AATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTA
* * * * *
186193 TGGGAAGACTAAGTTTATCGTGCCTAATCCAAAAAAGAATAAGGATTTCTGTGACTATTCATGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTT
* ** * *
186258 TGTCTTATTTTAGAGACAAACTTTGATTCTATCGTAAACGGTTGAAGGAAATGCTTTTCTTGCAA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* * * * * **
186323 CATTAAAGCATCAATGTCGCGTATCC-TATTAAAAGGAATGTGTTTTTGATTCCCAATCTCAAAA
324 CATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * * * * *
186387 AGTGTGGAGATTGTTATGAGAATCAGTGCTTGCTTTATTTAAAGAATGAACTTTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
**
186452 AAATAATGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
*
186476 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGGTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
***
186541 CAACGCGAATGAAGATCATTACTACAATCCATG--TGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * * * *
186604 ACAAAAATTGGTGGGAAAAAAAGCCTTTCTTACGAAACTAAAGCTTCAATATTGTGTATCCTTAT
131 ACCAAAATTGGTGGG-AAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * *
186669 AAGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGAC-AATTCATGTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAA-TCATGTT
* * * * * *
186733 TGTCTTATGTT-AGAGATAAACTTTGATTCTGTGAAAAATGGTTGAAAGAAATGCTTTTTTTACG
259 TGTCTTAT-TTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * **** * * *
186797 ACACCAAAGCATTAATGTCATATATCCTAACGAAAGGAATGTGTTTTTGGTTCCCAATATTGAAA
323 ACATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
186862 AGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGA-TAAATTTGATTTTAAGGA
388 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGA
*
186926 AAATATGGCAAAGAAAAGATTTCC
453 AAATAGGGCAAAGAAAAGATTTCC
* * * ** *
186950 ATGCAAAAGAAAATCATCAATATCATTTATCCT-GGTGAGAAGAATACCTTTATATTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAG-GAGGAGAATAAGTTTATACTGCCTAATC
* * * * * * * *
187014 AAAAAATGAATGAAGACCATTACTAGAATCCATGTTTATCACAATTGACGCATGAACTTACACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
187079 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATACTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * * *
187144 GAGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
*
187209 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTGCGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * * * *
187274 ATCGAAGCATCTATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCTAATCTCGAAAAG
325 ATCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * *
187339 AGTGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGATTTTAAGGAAA
390 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAA
*
187404 ATAGGGCGAAGAAAAGATTTCC
455 ATAGGGCAAAGAAAAGATTTCC
* * * *
187426 ATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGAAGAATACA-TTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATA-AGTTTATACTGCCTAATC
* * *
187490 ACAAAATGAATGAAGATCATT--T---ATCCATGTTTGTCACAATTGAGGCATGAAC-TTGCATT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAG-ACT
* * * * * **
187549 TTATCGAAATTGGTAGGAAGAAAGCCTTTCTTACGAAACC-AAGCCATTAATATCGTATATGATT
129 TTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG-CATCAATATCGTGTATCCTT
* *** * * * * *
187613 ATGAGAAGGCTAAGTTTATCACGCCTAATCCAAAAAAGAATAAGGATTTCTGTGACTATTCTTAT
193 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGT
* *
187678 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCGAAAACGGTTGAAAGAAATGCTTTTCTTGCA
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * * * *
187743 ACATTAAAGCATCAATGTCGCGTATCC-TATTGAAAGGATTGTGTTTTTGATTCCCAACCTTGAA
323 ACATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * * *
187807 AAGTGTGGAGATTGTTATGAGAATCAGTGCTTGCCTTATTTAAAGAATGAACTTTGATTTTAAGG
387 AAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGG
*
187872 AAAATAGTGCAAAGAAAAGATTTCC
452 AAAATAGGGCAAAGAAAAGATTTCC
187897 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
*** * *
187962 CAACGCGAATGAGGATCATTACTACAATCAATG--TGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
* * * *
188025 ACCAAAATTGGTGGGAA-AAAGCCTTTCTTACGAAACCAAAGCTTCCATATTGTGTATCCTTATA
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * * *
188089 AGAAAACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGATTCTATCAAAAACGG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTG--T-GA-C-TAATC--
* *** * ** * * ** * * ** ***
188154 CTGGAAGAAATACTTTTCTTGCGACATCAAAGCATCAATGT-T-GCATATCCTAATGAAAGGAAT
254 ATGTTTG---T-CTTAT-TTAAGAGA-CAAA-CTTTGAT-TCTATCAAAAACGGTTGAAA-GAA-
** * ** ** * * * * ***
188217 ATG-TTTT-TTG-TTCCT-AATCTCGAAAAGAGTTGAG-A-CTATTACGAGATTCAATGCTTGCC
309 ATGCTTTTCTTGCGACATCAA-AGCGTCAA-TGTTGCGTATC-CTTATGA-AAGGAATG--TG--
* * **** * * * ** ** * ** *
188276 CTATT--TAAGGAA--TTAAATAATATCATTTATCCTATTATGAGAATCGCTGCTTGGCTTATTT
366 TTTTTGGTTCCCAATCTTGAA-AAGA--GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
* * *
188337 AAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATTTCT
428 AAGGAATTAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
188386 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG-GAGAGAATAAGTTTACACTACCCAATC
1 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAG-GAGAATAAGTTTATACTGCCTAATC
* * * * * *
188450 ACAACATGAATGAAGATCATTACTAGAATCAATGTTTGGCAGATTTGAGGCACGAACATAGACTT
65 ACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTT
* * * *
188515 TACTAAAATTGGTGGGAAGAAAG-CTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * *
188579 GTGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAAGATTAGTGTGACTACTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTT
* *
188644 GTCTTATTTAAGAGACAAGCTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGCGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * *
188709 ATTAAAGCATCAAGGTCGCGTAGCC-TATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
325 ATCAAAGCGTCAATGTTGCGTATCCTTA-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* *** * * *
188773 AAGCATAGGCTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
389 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
188838 AATAGGGCAAAGAAAAGATTTCC
454 AATAGGGCAAAGAAAAGATTTCC
* * * * * *
188861 ATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCT
1 ATGC-AAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCT
188922 GATGACAACC
Statistics
Matches: 24858, Mismatches: 5132, Indels: 4269
0.73 0.15 0.12
Matches are distributed among these distances:
456 22 0.00
457 7 0.00
458 7 0.00
459 17 0.00
460 55 0.00
461 52 0.00
462 363 0.01
463 53 0.00
464 63 0.00
465 30 0.00
466 53 0.00
467 256 0.01
468 172 0.01
469 40 0.00
470 35 0.00
471 435 0.02
472 26 0.00
473 526 0.02
474 3522 0.14
475 3044 0.12
476 10941 0.44
477 885 0.04
478 108 0.00
479 37 0.00
480 18 0.00
481 20 0.00
482 44 0.00
483 41 0.00
484 30 0.00
485 31 0.00
486 55 0.00
487 58 0.00
488 49 0.00
489 210 0.01
490 72 0.00
491 167 0.01
492 73 0.00
493 50 0.00
494 28 0.00
495 29 0.00
496 38 0.00
497 44 0.00
498 42 0.00
499 44 0.00
500 37 0.00
501 20 0.00
502 20 0.00
503 62 0.00
504 43 0.00
505 54 0.00
506 43 0.00
507 39 0.00
508 15 0.00
509 38 0.00
510 27 0.00
511 20 0.00
512 11 0.00
513 18 0.00
514 23 0.00
515 11 0.00
516 52 0.00
517 51 0.00
518 22 0.00
519 11 0.00
520 18 0.00
521 35 0.00
522 42 0.00
523 29 0.00
524 82 0.00
525 36 0.00
526 39 0.00
527 32 0.00
528 52 0.00
529 78 0.00
530 74 0.00
531 43 0.00
532 40 0.00
533 51 0.00
534 85 0.00
535 22 0.00
536 12 0.00
537 14 0.00
538 17 0.00
539 59 0.00
540 34 0.00
541 44 0.00
542 22 0.00
543 63 0.00
544 32 0.00
545 13 0.00
546 30 0.00
547 121 0.00
548 142 0.01
549 136 0.01
550 56 0.00
551 88 0.00
552 150 0.01
553 104 0.00
554 72 0.00
555 82 0.00
556 88 0.00
557 60 0.00
558 100 0.00
559 36 0.00
560 16 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
CAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTT
ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATG
AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCATGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
TCAAAGCGTCAATGTTGCGTATCCTTATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAAA
TAGGGCAAAGAAAAGATTTCC
Found at i:161541 original size:952 final size:949
Alignment explanation
Indices: 156322--181845 Score: 17586
Period size: 952 Copynumber: 26.3 Consensus size: 949
156312 TCCATCATCA
*
156322 ATGCAAAAGAAAATCATCAATATCATTTAT-CTGAATGAGAAGAATACGTTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCT-AAGGAGAAGAATACGTTTATAGTGCCTAATC
* * * * *
156386 ACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGCCTCAAATGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
* * *
156451 TACCAAAATTGGTTGGAAGAAAGCCTTTCTTACGAAGCCAAACCATCAATATCGTGTATGCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * *
156516 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTTTTGTGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTT
* * * *
156581 GTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTTGAAAGAAATGCTATTCTTCCCAC
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * *
156646 ATGAAAGCGTCAATGTCATGTATCCTATTGAAAGGAATGAGTTTATGGTTCCCAATCTCGAAAAG
324 ATCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * *
156711 AGTGGAGACTGTTACGAGAATTAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTCAGGAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* * * *
156776 ATAGGGTAAAGAAAAGATTT-CAAGCAGAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* * **
156840 ATAAGTTTATACTACCTAATCACAATGTGAATGAAGATCATTACTACAATCCACATTTGTCACAT
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
** * * *
156905 TTGAGGCATAAACTTAGACTTTGCCAAAATTGGTGGGAAG-AAGCCTTTCTTATGAAACCAAAGC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * * * * *
156969 TTCAATATCATGTATCCTTATGGGAAAACTATGTTTATGGTGCCTAATCCTA-AAAAGAATAAGG
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AGAAAAGAATGAGG
** * * * *
157033 ATTTTTTG-G-CTATTCATGTGTGGCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTC
711 A-TTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * * * * *
157096 GAAAGAAATGCTTTTCTT-CCAGCATTAAAGCATCAATGTCAAGTATCCTATTGAAAGGATTGTG
775 GAAAGAAATGCTTTTCTTACGA-CATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTG
* * * * *
157160 TTTCTAGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATGCTCGCCTTATTTAAG
839 TTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * *
157225 GAATGAACTTTGATTTTAAAGAAAATAGTGCAAAGAAAAGATTTCC
904 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * *
157271 ATGCAAAAGAAAATCATCCATATCATTTATTCTAAGGAGGAGAATAAGTTTATACTACCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
** * * * * * *
157336 CAACGTGAATGAAGATCATTACTACAATCCATGCTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
*** * * * * * *
157401 ATTGAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAGCAAAGCTTCAACATCGTGAATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* *
157466 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGAGTA-ACTAATCATGTTT
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTG-AGACTATTCATGTTT
* * * *
157530 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGATGGAAGAAATGCTTTCCTTGTGAC
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * *
157595 ATCATAGCATCAATGTTGCAAATCCT-TATGCAAGGAATGTGTTTTTGGTTCCCAATGTTGAAAA
324 ATCAAAGCGTCAATG-T-CATATCCTAT-TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * *
157659 GAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAAGAA
386 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAA
* * *
157724 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAAGAAGGAG
451 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAG
157789 AATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACA
516 AATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACA
* **
157854 TTTGAGGCACGAACATCA-CCTTTACCAAAATTGGTGGGAAGAAAG-CTTTCTTTTGAAACCAAA
581 TTTGAGGCACGAACAT-AGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
* ** *
157917 TCATCAATATCGTGTATCCTTAAAAGAAGACTAAGTTTATGGTGCCTAATCC-GAAAAAGAAAGA
645 GCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAG-AAAAGAATGA
* * * * * *
157981 GGATTAGTGTGACTACTCATATTTGTCTTATTTAAGAGATAAACTATGATTCTATCGAAAACGGT
709 GGATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * *
158046 TGAAAGAAATGCTATTCTTATGGCATCAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGTG
774 TGAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTG
* * * * * * *
158111 TTTCTGGTTCCCAATCTCGAAAAAAGTGGAGACTGTTACGAGATTTAATACTTGCCTTATTTAAG
839 TTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* *
158176 GAATTAACTTTGATTTTCAGGAAAATAGGGCAAAGAAAAGATTT-C
904 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* ** * * * * *
158221 AAGCAGCAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTATATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
** * * * * *
158286 CAACGTGAATGAAGA-CTATTACTACAATCCACGTTTGTCACATTTGAGGCATGAACATAAGACT
66 CAAAATGAATGAAGAGC-ATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAAC-TTACACT
* * * * *
158350 TTGCCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCTTCAATATCATGTATCCTTA
129 TTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTA
* * * * * * **
158415 TGGGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAATAAGGATTTTTTTGACTATTCATGTT
194 TGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTT
* * * * *
158480 TCTCTTATTTGAGGGACAAACTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTG-TA
259 TGTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA
* ** * * * **
158544 GCATTAAAGTATCAATGTCGCGTATCCTATTGAAAGGAATGTGGTTCTGGTTCCCAATCCCGAAA
323 -CATCAAAGCGTCAATGT--CATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * * *
158609 AGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATATTAAAGA
385 AGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGA
* * *
158674 AAATAGTGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCAA-ATCATTTATCCCAGGGAGG
450 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT-CAATATCATTTATCCTAAGGAGG
* * *
158738 AGAATAAGTTTATACTGCCTAATCACAACATGAATGAAGATCATTACTACAATCCATATTCGTCA
514 AGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCA
* * *
158803 TATTTGAGGCAGGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAGCAA
579 CATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAA
* * * *
158868 AGCTTCAATATCGTGTATCCTTAAGAGAAAACTAAGTTTATGGTGCCTAATCCTA-AAAAGAATA
644 AGCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AGAAAAGAATG
* * * *
158932 AGGATTAGT-ATGACAATTCATATTTGTCTTGTTTTAGAGACAAACTTTGATTCTATCAAAAACG
708 AGGATTAGTGA-GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * **
158996 GTTGAAAGAAATGCTTTTTTTACGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATG
772 GTTGAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATG
* * * * *
159061 TGTTTTTGGTTCCCAATGTTGAAAAGAGAGGAGACTATTACGAGAATCAGTGCTTGCCTTATTTA
837 TGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTA
* *
159126 AGGGATGAAA-TTGATTTTCAA-GAAAATAGGGCAAAGAAAAGATTTCC
902 AGGAATTAAATTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTCC
** *
159173 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATTAGAAGAATACGTTTATAGTGCCGAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* * **
159238 CAAAATAAATGAAGA-CTATTACTGGAATCCATGTTTGTCACAATTGAGGCACAAACTTACACTT
66 CAAAATGAATGAAGAGC-ATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
** *
159302 TACCAAAATTGGTATGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * * *
159367 GAGAAGACTAAGTTTATGGTGCCTACA-ACGAAAAAGAATGAGGATTAGTGTGACTATTCATGTT
195 GAGAAGACTAAGTTTATGGTGCCTA-ATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTT
* * * *
159431 TGTCTTATTTAAGAGAC-ACTTTGATACTATCAAAAACGATTGGAAGAAATGCTTTTCTTGCGAC
259 TGTCTTATTTAAGAGACAAATTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * * *
159495 ATCAAAGCGTCAATGTCGCGTATCCTACTGAAAAGAATATGTTTTTGGTTCTCAATCTTGAAAGG
324 ATCAAAGCGTCAATGT--CATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
*
159560 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAACTTTGATTTTAAGGAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* * *
159625 ATAGGGCGAAGAAAAGATTTCCAAGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
** * * * *
159690 ATAAACTTATATTGCCCAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACAT
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
*
159755 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
*
159820 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-GAAAAAGAATAAGG
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAG-AAAAGAATGAGG
* * * * *
159884 ATTAGTGTGACTACTCATGTTTGGCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTTT
711 ATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TT
* * **
159949 G-AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* * * *
160013 TTTTTGTTCCCAATCTCGAAAAGAGTGGAGACTGTTACGGGAATCAATGCTTGCCTTATTTAAGG
840 TTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* *
160078 AATTAAATTTGGTTTTAAGG--AATAAGGCAAAGAAAAGATTTCC
905 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
160121 ATGTAACAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTAATAA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* ** * *
160186 CAAAATGAATGAATG-CCATTACTAGAATCTGTGTTTGTCACAATTGAGGCACGGACTTACACTT
66 CAAAATGAATGAA-GAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
* * * *
160250 TACAAAAATTGGTGGGAAGAATGCCCTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * * * * * *
160315 GGGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTT
* * *
160380 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTAGGGAC
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* * * * * * * *
160445 ATCGAAGCATCTATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCTAATCTCGAAAAG
324 ATCAAAGCGTCAATG-T-CATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * *
160510 AGTGGAGACTATTATGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGATTTTAAGAAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* * * *
160575 ATAGGGCGAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* * * ** * * *
160640 ATACGCTTATAGTGCCTAATCACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAA
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
* * * * *
160705 TTGAGGCAAGAACTTACACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * * * *
160770 ATCAATATCGTGTATTCTTATGAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAACGAGGA
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAGGA
** * * *
160835 TTTCTGAGACTATTCAAGTTTGTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGA
712 TTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGA
* * * * **
160900 AAGAAATGCTTTTCTTGCGATATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTT
777 AAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGTTT
160965 TTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAA
842 TTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAA
* *
161030 TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
907 TTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * *
161073 ATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
** * * * * * *
161138 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* * * *
161203 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* *
161268 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGATGATTTGTGAGACTAATCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
** * * *
161333 TCTTATTTAAGAGATGAATGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTTTTTTACGACA
261 TCTTATTTAAGAGACAAAT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* * * * * *
161398 CCAAAGTGTCAATGTCATATACCGTAATGAAAGGAATTTGTTTTTAGTTCCCAATGTTGAAAAGA
325 TCAAAGCGTCAATGTCATAT-CC-TATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
161463 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAAAA
388 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
* * *
161528 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC----GT-GTAAGGAGTGGAG
453 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGA--GGAG
* ** *** * * * * *
161588 ACT--G-TTATGA--GAATCAATGC-TTGCCTTATTTAAGGA--A-T--TA-AAT--TTGGTTT-
516 AATAAGTTTAT-ACTGCCT-AAT-CACAACGTGAATGAA-GATCATTACTACAATCCAT-GTTTG
* * ** * * *** ** * **
161638 TAAGGAAAATAAGGCAAAGAA-A-AGA-TTT-CC---A-T-G-CAAAAGAAAATCATTAATATC-
576 TCA--CATTTGAGGC-ACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA-CG
* ** *** ** * * * *
161692 ATTTATCCTAATGAG-AAGAATA-CGCT-TAT-GAAACCA-AACCATCAATATGTTTTTGGT-TC
637 A---AACC-AA--AGCATCAATATCG-TGTATCCTTATGAGAA-GA-C--TAAGTTTATGGTGCC
** * * * *
161751 TCAATCTTGAAAGGAGTG-GAGACTGTTA-TGAGA--A-TCAATGCTTGCCTTATTTAAG-GA-A
691 T-AATCCAGAAAAGAATGAG-GA---TTAGTGAGACTATTC-ATGTTTGTCTTATTTAAGAGACA
* * * ** * * * * * * * * * ** * * *
161809 TTAAATTTGGTTTTAAGGAAAATAAGG--CAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAA
750 --AACTTTGATTCT-ATCAAAA-ACGGTTGAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAA
* ** ** * * *** * * * * * *
161872 TATCATTTATCCTAATGAGAA-GAATACGCTTATGAAACCAAACCATCAATATCGTGTATCCTTA
811 TGTCACGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTGAA-A---AG-A-----G
*
161936 TGGGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTT
865 T-GG-AGACT--G-TTAT-GAG---AAT-C-------AAT---G-C---T-TG----C-C----T
* * *** * ** * * * *
162001 TGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTTG-GAAGAAATGCTTTTC
896 TAT-TTA---AGGAATTAAA-TTTGATTTTAAGGAAAATA-GG--GCAAAGAAAAGATTTCC
* ** * *** * * * **** * ** * * *
162060 TTGGGACATCGAAGCATCTATGTTGCGTATCCTAATGA-AAGGAATGTGTTTTTTGTTCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAA-GAATACGTTTATAGTGCCTAATC
* * * * * ** ** * * * * * **
162124 TCGAAAA-GAGTGGAGA-CTATTA-TGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGA
65 AC-AAAATGAATGAAGAGC-ATTACT-AGAATCCATGTTTGTCACAATTGAGGCATGAACTTACA
* ** ** * * * * ** ** *
162186 TTTTAAGAAAAGATTTCCATGCAAAAGAAAAATAGTGCCTAATC--ACAAAATGAATGAAGAGCA
127 CTTT-ACCAAA-A-TT-GGTG----GGAAGAA-A--GCCT-TTCTTACGAAACCAA--ACCATCA
* * * * * * * * * * ******
162249 TTA-C-TAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACT-TTACCAAAATTGGTGGG
178 ATATCGT-GTATCC-T-TATG-----A--GAAG-ACTAAGTT-TA-TGGTGCC-TAA-TCCAAAA
* **** * * * * * * * * * * *
162311 AAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTATGAGAGGAC-TATGTTT
228 AAGAATGAGGAT-TTGTGAGA-C-TA--TTC-ATGT-TTGTCTTATT-TAAGA-GACAAAT-TTG
** * ** * ** **
162375 ATAGTGCCTAATCTAGAAAA-GAATG-AGGATTTCTGAGACTATTCAAGTTTGTC-TTATTTAAG
283 AT--T--CT-ATC-A-AAAACGGTTGAAAGA--AAT--G-CTTTTC----TTG-CGACATCAAAG
* * ** ** * * * * * *
162437 AGACAAATTTTGATTTTATCAAAAACGGTTGAAA-GAA-ATGCTTTT-CTT-GCGATATT--AAA
331 CGTC-AA---TG-TCATATC-----CTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* ** * ** ** * *
162496 GCGTCAATGTCACGTATCCTATTGAAAGGAATGC-ATTTTTGGTTCCCAATCTTGAAAAGAGTGG
386 GAGTGGA-G--AC-TGT--TA-TG--A-GAAT-CAATGCTT-G--CCTTAT-TT--AAGGAAT-G
* * * * * * *** *
162560 AGAC--TG-TTATGA-GAATCAAT-GCTTGCCTTATTTAAGGAATGAACTTT-GATTTTAAGGAA
433 A-ACTTTGATTTTAAGGAA--AATAG---GGC--A---AAGAAAAG-A-TTTCCATGCAAAAGAA
* * ** * * * ** * * * **
162619 AATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGA
485 AAT----CATCA-ATATCATTT--ATCCTAAGGAGGAGAAT--A-A--GTTTATACT-----GCC
* * * * * *
162683 GAATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCAC
533 TAATCA---CA-AC-G-----T--GAATGA------AGATCATTACTACAATCCATGTTTGTCAC
* * * *
162748 ATTTGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAA
580 ATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
* *
162813 GCTTCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
645 GCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAG
* * ** *
162878 GATTTGTGAGACTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGT
710 GATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGT
* * *
162942 TGAAAGAAATGCTTCTT-TTACGACACCAAAGTGTCAATGTCA--TATACCGTAACGAAAGGAAT
774 TGAAAGAAATGCTT-TTCTTACGACATCAAAGCGTCAATGTCACGTAT-CC-TAATGAAAGGAAT
* * *
163004 TTGTTTTTAGTTCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
836 GTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
*
163069 AAGGAGTTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
901 AAGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
163118 ATGCAAAAAAAAATCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAA-GGAGAAGAATACGTTTATAGTGCCTAATC
* *
163182 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTAACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
* *
163247 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * * * *
163312 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTTTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTT
* *
163377 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* **
163442 ATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAG
324 ATCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
163507 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* * *
163572 ATAGGGCGAAGAAAAGATTTCCAAGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
** ** * * *
163637 ATAAACTTATTTTGCCCAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACAT
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
* ** * *
163702 TTGAGGCACGAACATACACTTTACCAAAATTGGTATGAAGAAAGCCTTTCTTATGAAACCAAACC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* *
163767 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTACAACGA-AAAAGAATGAGG
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTA-ATCCAGAAAAGAATGAGG
* * *
163831 ATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGAC--ACTTTGATACTATCAAAAACGATTT
711 ATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GTT
* * * * *
163894 G-AAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCGCGTATCCTACTGAAAAGAATATGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* * *
163958 TTTTGGTTCTCAATCATGAAAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
840 TTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* * * *
164023 AATTAAATTTGGTTTTAAGGAAAGTTGGGCCAAGAAAAGATTTCC
905 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
164068 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGAAGAATACATTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* * * *
164133 CAAAATGAATGAATACCTTTACTAGAATCCATGTTTGTCACAATTGAGGCATGAGCTTACACTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* * *
164198 ACCAAAATTGGTGGGAAGAAAGCCATTCTTACAAAACCAAACCATCAATATCGTGTATCCTTAAG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* * * * *
164263 AGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGATTAGTGTGACTACTCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
* * *
164328 GCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTTTG-AAGAAATGCTTTTCTTGCGAC
261 TCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGAC
* * * * *
164392 ATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAAG
324 ATCAAAGCGTCAATG-T-CATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * *
164457 AGTGGAGACTGTTACGGGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGG--A
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* * * * *
164520 ATAAGGCAAAGAAAAGATTTCCATGTAACAGAAAATCATCAATATCATTTATCCTAATGAGAAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* ** * ** * * **
164585 ATACGTTTATTGTGCCTAATAACAAAATGAATGAATG-CCATTACTAGAATCTGTGTTTGTCACA
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAA-GATCATTACTACAATCCATGTTTGTCACA
* * * * * * * *
164649 ATTGAGGCACGGACTTACACTTTACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAACCAAAC
581 TTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG
* *
164714 CATCAATATCGTGTATCCTTATGGGAAGACTAAGTTTATGGTGCCTAAT-CTGAAAAAGAATGAG
646 CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAG-AAAAGAATGAG
* * * *
164778 GACTAGTGTGACTACTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
710 GATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * ** * *
164843 GGAAGAAATGCTTTTCTTACGACATCAAAGCATCAATGTTGCATATCCTAATGAAAGGAATATGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* * * * * *
164908 TCTTT-GTTCCTAATCTCGAAAAGAGTTGAGACTATTACGAGATTCAATGCTTGCCTTATTTAAG
840 T-TTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* *
164972 GAATTAAATTTGATTTTAAGGAAAATAGGACGAAGAAAAGATTTCC
904 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* ** *
165018 ATGCAAAAAAAAATCATCAATATCATTTATCCTAACAAGAAGAATACGTTTATAGTGCCTAATTA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* * * * *
165083 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCATAAACTTGCATTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* * * * * * *
165148 ATCGAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACTAAGCCATAAATATCGTATATGCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* * *
165213 AGAAGACTAAGTTTATCGTGCCTAATCCAAAAAAGAATAAGGATTTCTGAGACTATTCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
* *
165278 TCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGATA
261 TCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* **
165343 TTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGA
325 TCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
165408 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
388 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
* *
165473 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAA
453 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAA
* *
165538 TAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATT
518 TAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATT
* * * *
165603 TGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCT
583 TGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
*
165668 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGAT
648 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAGGAT
* * * ** *
165733 TTGTGAGACTAATCATGTTTGTCTTATGTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGA
713 TAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGA
* * * *
165797 AAGAAATGCTTCTT-TTACGACACCAAAGTGTCAATGTCA--TATACCGTAACGAAAGGAATTTG
777 AAGAAATGCTT-TTCTTACGACATCAAAGCGTCAATGTCACGTAT-CC-TAATGAAAGGAATGTG
* *
165859 TTTTTAGTTCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
839 TTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
165924 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
904 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
165970 ATGCAAAAGAAAGTCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAA-GGAGAAGAATACGTTTATAGTGCCTAATC
*
166034 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
* *
166099 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * * * *
166164 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTCTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTT
* *
166229 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* **
166294 ATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAG
324 ATCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
166359 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* *
166424 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* *
166489 ATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACAT
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
* * *
166554 TTGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* *
166619 TTCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGA
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAGGA
* * * ** *
166684 TTTGTGAGACTAATCATGTTTGTCTTATGTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTG
712 TTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTG
* * * *
166748 AAAGAAATGCTTCTT-TTACGACACCAAAGTGTCAATGTCA--TATACCGTAACGAAAGGAATTT
776 AAAGAAATGCTT-TTCTTACGACATCAAAGCGTCAATGTCACGTAT-CC-TAATGAAAGGAATGT
* *
166810 GTTTTTAGTTCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
838 GTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
166875 GGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
903 GGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
166922 ATGCAAAAGAAAGTCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAA-GGAGAAGAATACGTTTATAGTGCCTAATC
*
166986 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
* *
167051 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * * * *
167116 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTCTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTT
* *
167181 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* **
167246 ATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAG
324 ATCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
167311 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* *
167376 ATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* *
167441 ATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACAT
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
* * *
167506 TTGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * *
167571 TTCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGGTGCCTAATCCAAAAAAAGAATGAGG
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AGAAAAGAATGAGG
* ** *
167636 ATTTA-TGAGACTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGT
711 A-TTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGT
* * * *
167699 TGAAAGAAATGCTTCTT-TTACGACACCAAAGTGTCAATGT-A-ATATACCGTAACGAAAGGAAT
774 TGAAAGAAATGCTT-TTCTTACGACATCAAAGCGTCAATGTCACGTAT-CC-TAATGAAAGGAAT
* * * **
167761 TTGTTTTTAGTTCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTTTCTTATTT
836 GTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
167826 AAGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
901 AAGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
167875 ATGCAAAAGAAAATCATTAATATTATTTATCCT---------AACACGCTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
*
167931 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* *
167996 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* * * * * * *
168061 AGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAACGAGGATTTCTGAGACTATTCAAGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
* *
168126 TCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGATA
261 TCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* **
168191 TTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGA
325 TCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
168256 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
388 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
* * *
168321 TAGGGCATAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAG
453 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAA
*
168386 TAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATT
518 TAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATT
* * * * * * *
168451 TGAGGCATGAACATGGACTTTACTAAAATTGGTGGGCAGAAAGCCTTCCTTGCGAAACCAAAGCT
583 TGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
* *
168516 TCAATATCGTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCTA-AAAAG-ATAAAGG
648 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AGAAAAGAAT-GAGG
* * * *
168579 ATTAGT-ATGACAATTCATGTTTGTCTTGTTTTAGAGACAAACTTTGATTCTGTCAAAAACGGTT
711 ATTAGTGA-GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * ***
168643 GAAAGAAATGCTTTTTTTACGACACCAAAGCGTCAATGTCTTATATCCTAATGAAAGGAATGTGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* *
168708 TTTTGGTTCCCAATGTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGG
840 TTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* * * *
168773 GATGAAA-TTGATTTTAAGGAAAGTATGGCAAAGAAAAGATTTCC
905 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* *
168817 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGCGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* * *
168882 CAAAATGAATGAAGAGCATTACTAGCATCCATGTTTGTCACAATTGAGACATGAACTTACACTTC
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* *
168947 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* * * * * *
169012 GGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGAGTAGTGTGACTACTCAAGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
* * *
169077 TCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACAGTTGGAAGAAATGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* * * * * * **
169142 TCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCTAACCTCAAAAAGA
325 TCAAAGCGTCAATG-T-CATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
169207 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAAAA
388 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
* * * *
169272 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAAGAA
453 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAA
* * * ** * * * * * *
169337 TACGTTTATAATGCCTAATAACAAAATGAATGAATG-CCAATACTAAAATCCGTGTTTGTCTCAA
518 TAAGTTTATACTGCCTAATCACAACGTGAATGAA-GATCATTACTACAATCCATGTTTGTCACAT
* * * * *
169401 TTGAGGCACGAGCTTACACTTTA-CAAGAATTGGTGGGAAGAAAGCCTTTCTTACGATACCAAAC
582 TTGAGGCACGAACATAGACTTTACCAA-AATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG
* * * ** *
169465 CATCAATATCATGTATCCCTATGGGAAGACTAAGTTTATGGCACCTAATTC-GAAAAAGAATGAG
646 CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAG-AAAAGAATGAG
* * * *
169529 GACTAGTGTGACTACTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
710 GATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* ** * * ** *
169594 GGAAGAAATGCTTTTCTTGTGATATCAAAGCATCAATGTTGCGTATCCTAAGGAAAGGAATGTGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* * ** * * *
169659 TTTTTGTTCCTAATCCCGAAAAGAGTGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGG
840 TTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* *
169724 AATTAAATTTGATGTTAAGGAAAGTTA-GGCAAAGAAAAGATTTCC
905 AATTAAATTTGATTTTAAGGAAA-ATAGGGCAAAGAAAAGATTTCC
* * * * *
169769 ATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
** * * * * * *
169834 CAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* * * *
169899 ACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
*
169964 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTAATCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
** * * *
170029 TCTTATTTAAGAGATGAATGTTGATTCTGTCAAAAACGGTTGAAAGAAATGCTTTTTTTACGACA
261 TCTTATTTAAGAGACAAAT-TTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* * ** * * *
170094 CCAAAGTGTCAATGTCATATACCGTAACGAAAGGAATTTGTTTTTAGTTCCCAATGTTGAAAAGA
325 TCAAAGCGTCAATGTCATAT-CC-TATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
170159 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAAAA
388 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
* * *
170224 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC----GT-GTAAGGAGTGGAG
453 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGA--GGAG
* ** *** * * * * *
170284 ACT--G-TTATGA--GAATCAATGC-TTGCCTTATTTAAGGA--A-T--TA-AAT--TTGGTTT-
516 AATAAGTTTAT-ACTGCCT-AAT-CACAACGTGAATGAA-GATCATTACTACAATCCAT-GTTTG
* * ** * * *** ** * **
170334 TAAGGAAAATAAGGCAAAGAA-A-AGA-TTT-CC---A-T-G-CAAAAGAAAATCATTAATATC-
576 TCA--CATTTGAGGC-ACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA-CG
* ** *** ** * * * *
170388 ATTTATCCTAATGAG-AAGAATA-CGCT-TAT-GAAACCA-AACCATCAATATGTTTTTGGT-TC
637 A---AACC-AA--AGCATCAATATCG-TGTATCCTTATGAGAA-GA-C--TAAGTTTATGGTGCC
** * * * *
170447 TCAATCTTGAAAGGAGTG-GAGACTGTTA-TGAGA--A-TCAATGCTTGCCTTATTTAAG-GA-A
691 T-AATCCAGAAAAGAATGAG-GA---TTAGTGAGACTATTC-ATGTTTGTCTTATTTAAGAGACA
* * * ** * * * * * * * * * ** * * *
170505 TTAAATTTGGTTTTAAGGAAAATAAGG--CAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAA
750 --AACTTTGATTCT-ATCAAAA-ACGGTTGAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAA
* ** ** * * *** * * * * * *
170568 TATCATTTATCCTAATGAGAA-GAATACGCTTATGAAACCAAACCATCAATATCGTGTATCCTTA
811 TGTCACGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTGAA-A---AG-A-----G
*
170632 TGGGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTT
865 T-GG-AGACT--G-TTAT-GAG---AAT-C-------AAT---G-C---T-TG----C-C----T
* * *** * ** * * * *
170697 TGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTTG-GAAGAAATGCTTTTC
896 TAT-TTA---AGGAATTAAA-TTTGATTTTAAGGAAAATA-GG--GCAAAGAAAAGATTTCC
* ** * *** * * * **** * ** * * *
170756 TTGGGACATCGAAGCATCTATGTTGCGTATCCTAATGA-AAGGAATGTGTTTTTTGTTCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAA-GAATACGTTTATAGTGCCTAATC
* * * * * ** ** * * * * * **
170820 TCGAAAA-GAGTGGAGA-CTATTA-TGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGA
65 AC-AAAATGAATGAAGAGC-ATTACT-AGAATCCATGTTTGTCACAATTGAGGCATGAACTTACA
* ** ** * * * * ** ** *
170882 TTTTAAGAAAAGATTTCCATGCAAAAGAAAAATAGTGCCTAATC--ACAAAATGAATGAAGAGCA
127 CTTT-ACCAAA-A-TT-GGTG----GGAAGAA-A--GCCT-TTCTTACGAAACCAA--ACCATCA
* * * * * * * * * * ******
170945 TTA-C-TAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACT-TTACCAAAATTGGTGGG
178 ATATCGT-GTATCC-T-TATG-----A--GAAG-ACTAAGTT-TA-TGGTGCC-TAA-TCCAAAA
* **** * * * * * * * * * * *
171007 AAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTATGAGAGGAC-TATGTTT
228 AAGAATGAGGAT-TTGTGAGA-C-TA--TTC-ATGT-TTGTCTTATT-TAAGA-GACAAAT-TTG
** * ** * ** **
171071 ATAGTGCCTAATCTAGAAAA-GAATG-AGGATTTCTGAGACTATTCAAGTTTGTC-TTATTTAAG
283 AT--T--CT-ATC-A-AAAACGGTTGAAAGA--AAT--G-CTTTTC----TTG-CGACATCAAAG
* * ** ** * * * * * *
171133 AGACAAATTTTGATTTTATCAAAAACGGTTGAAA-GAA-ATGCTTTT-CTT-GCGATATT--AAA
331 CGTC-AA---TG-TCATATC-----CTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* ** * ** ** * *
171192 GCGTCAATGTCACGTATCCTATTGAAAGGAATGC-ATTTTTGGTTCCCAATCTTGAAAAGAGTGG
386 GAGTGGA-G--AC-TGT--TA-TG--A-GAAT-CAATGCTT-G--CCTTAT-TT--AAGGAAT-G
* * * * * * *** *
171256 AGAC--TG-TTATGA-GAATCAAT-GCTTGCCTTATTTAAGGAATGAACTTT-GATTTTAAGGAA
433 A-ACTTTGATTTTAAGGAA--AATAG---GGC--A---AAGAAAAG-A-TTTCCATGCAAAAGAA
* * ** * * * ** * * * **
171315 AATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGA
485 AAT----CATCA-ATATCATTT--ATCCTAAGGAGGAGAAT--A-A--GTTTATACT-----GCC
* * * * * *
171379 GAATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCAC
533 TAATCA---CA-AC-G-----T--GAATGA------AGATCATTACTACAATCCATGTTTGTCAC
* * *
171444 ATTTGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAA
580 ATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
* * *
171509 GCTTCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAT
645 GCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAG
* * ** *
171574 GATTTGTGAGACTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGT
710 GATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGT
* * * * *
171638 TGAAAGAAATGCTTTTTTTACGACACCAAAGTGTCAATGTCA--TATACCGTAACGAAAGGAATT
774 TGAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTAT-CC-TAATGAAAGGAATG
* *
171701 TGTTTTTAGTTCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTA
837 TGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTA
171766 AGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
902 AGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * * * **
171814 ATGCAAAAGAAAATCATTAATATC----GT-GTAAGGAG-TGGAGAC-TGTTAT-GAGAATCAAT
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGT-TTATAGTGCCT-AAT
***** * * * * * * * * * * *
171871 GC-TTGCCTTATTTAAG-G-A--ATTA-AAT--TTGGTTT-TAAGGAAAATAAGGCAAAGAA--A
64 -CACAAAATGAATGAAGAGCATTACTAGAATCCAT-GTTTGTCA--CAATTGAGGC-ATGAACTT
* *** ** * ** *** * *
171925 AGA-TTT-CC---A-T-G-CAAAAGAAAATCATTAATATC---ATTTATCC-T-AATGA--GAAG
124 ACACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA-CGAAACCAAACCATCAAT-ATCG-TG
* * * * * *** * *
171975 AATACGCTTATGAAACCAAACCATCAATATGTTTTTGGT-TCTCAATCTTGAAAGGAGTG-GAGA
186 TAT-C-CTTATGAGA--AGA-C-T--A-A-GTTTATGGTGCCT-AATCCAAAAAAGAATGAG-GA
* * * * * * ** *
172038 CTGTTATGAGA--A-TCAATGCTTGCCTTATTTAAG-GAATTAAATTTGGTTTTAAGGAAAATAA
239 -T-TTGTGAGACTATTC-ATGTTTGTCTTATTTAAGAG-A-CAAATTTGATTCT-ATCAAAA-AC
* * * * * * * ** * * * * *
172099 GG--CAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAA-GAA
297 GGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCA--TATCCTATTGA-AAGGAA
** * * *** * * * * * ** * * * * * **
172161 TACGCTTATGAAACCAAACCATCAATATCGTGTA-TC-CTTATGGGAAGACTAAGTTTATGGTGC
359 TGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAA-TC-AA--TGCT--TGC
* ** * * * *** ***
172224 CTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTTG-TCTTA-TTTAAGAGACAAAC
418 CTTAT---TTAAGGAATGA--ACT--T-TGA-T-TTTAAG---GAAAATAGGGCAA-AGA-AAA-
* *
172287 TTTGA-TTCTAT-CAAAAACGGTTGGAAGAAATGCTTTTCTTGGGACATCGAAGCATCTATGTTG
467 ---GATTTCCATGC-AAAA------G-A-AAA---------T----CATC-AA-TATC-A--TT-
* * ** * ** * * ** * *
172350 CGTATCCTAATGA-AAGGAATGTGTTTTTTGTTCCTAATCTCGAA-AAGAGTGGAGA-CTATTA-
501 --TATCCTAAGGAGGA-GAATAAGTTTATACTGCCTAATCAC-AACGTGAATGAAGATC-ATTAC
* * * ** ** * * ** * * ** **
172411 TGAGAATCAATGCTTACCTTATTTAAGGAATTAA-ATTTGATTTTAAGAAAAGATTTCCATGCAA
561 T-ACAATCCATGTTTGTCACATTTGAGGCACGAACA-TAGACTTT-ACCAAA-A-TT-GGTG---
* * * ** ** ** * * *
172475 AAGAAAAATAGTGCCTAATCACAAAATGAATGAAGAGCATTACTAGA-ATCCATGTTTGTCAC-A
617 -GGAAGAA-A--GCCT-TTCTTACGA--AACCAA-AGCA-T-C-A-ATAT-C--GTGTATC-CTT
* * * * * * *** ** * **** *
172538 ATTGAG--GCACGAACTTACACT-TTACCAAAATTGGTGGGAAGAAAGCCTTTCTTA-TGAAACC
666 A-TGAGAAG-ACTAAGTT-TA-TGGTGCC-TAA-TCCAGAAAAGAATG--AGGATTAGTGAGA-C
* ** *** * * ** * * * ** * *
172599 AAACCATCAATATCGTGTATTCTTATGAGA-GGACTATGTTTATAGTGCCTAATC--TAGAAA-A
722 TATTCATGTTTGTC-T-TA-T-TTAAGAGACAAACTTTGATTCTA-T-CAAAAACGGTTGAAAGA
** * * * * * ** * *
172660 GAATGAGGATTTCTGA-GACTATTC-AA--GT--TTGT--CTTAT-TTAA-GAGACAAATTTTGA
781 -AAT--GCTTTTCTTACGAC-A-TCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAA-TGTGT
* ** * * * * * * **
172715 TTTT--ATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGA-TATTA-AAGCGTCAATGTCACGT
840 TTTTGGTTCCCAATC--TTGAAA-AGA-G------TGGAGACTGTTATGAGAATCAATG---C-T
* * ** * ** * * **
172776 AT-CC-TATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAGTGG---AG-ACTG--TT
891 -TGCCTTATT-TAAGGAAT-TAAATTTGATT-TTAA---GGAAAATAG-GGCAAAGAAAAGATTT
172833 --
948 CC
* * * ** *
172833 ATG----AG--AATCAATGC--T-TGC-CTTAT-TTAAGGA-ATGAACTTTGATTT-TAAG-G-A
1 ATGCAAAAGAAAATC-AT-CAATAT-CATTTATCCTAAGGAGAAGAA-TACG-TTTAT-AGTGCC
* * * * * * * *
172883 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-A--A-AATAATCCATATCATTTATC-CTAA-
60 TAAT----CACA-AAATGA-----ATG-AAGAGCATTACTAGAATCC--AT-GTTTGTCAC-AAT
* * * * * * * * *
172942 GGAGGAGAAT-AAGTTTATACTGCCTAATCACAA-T-GT--GAATG-AAG---ATCATTAC--TA
110 TGA-G-GCATGAA-CTTACACT---TTACCAAAATTGGTGGGAA-GAAAGCCTTTC-TTACGAAA
* * * * * ** **
172996 -C--A--ATC--TAT-GTTTGTCACATT-TGAGGCATGAACATAGACTTTA--CT--AAAATTGG
167 CCAAACCATCAATATCGTGTATC-C-TTATGA-G-AAG-AC-TA-AGTTTATGGTGCCTAA-TCC
**** * **** * * * * * * ** * *
173048 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAGACTAAG
224 AAAAAAGAATGAGGAT-TTGTGAGA-C-TA--TTC-ATGT-TTGTCTTATT-TAAG-AGAC-AAA
* * * * *
173113 TTT-ATGGTGCCTAATCCAAAAA----AGAATG--ATG-ATTT-GTGAGAC-T--AA---TC-AT
279 TTTGAT--T--CT-AT-CAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAAT
* * * * * * ** * *
173162 GT-TTGTCTTATTTAAGAGATGAATGTTGATTCT-G-TCAAAAACGGTTG-AAAGA---AATG-C
338 GTCATATCCTATTGAA-AG--GAATG-TGTTTTTGGTTCCCAATC--TTGAAAAGAGTGGA-GAC
* * * * * * ** * * *
173219 TTTTTTTACGACACCAAAGTGTCAATGTCATATACCGTAACGAAAGGAA-TTTGTTTTTAGTTCC
396 TGTTATGA-GA-ATC-AA-TG-C-TTG-CCT-TA-TTTAA-GGAATGAACTTTG--ATT--TT--
* * * * * **** * *
173283 CAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG-GAAT--TAAA
445 -AA-G--GAAAATA--GG-G-C----A-AAGAA--AA-GATTTCCATGCAAAAGAAAATCATCAA
* * **** ** * * ** *
173345 TTTGATTTTAAGGAAAATAGGGCAAAGAA-AAGATT-TCCATGCAAAAGAAAATCATTAATATCG
494 TATCA-TTTATCCTAAGGA-GG---AGAATAAGTTTATAC-TGC-----CTAATCA--CA-A-CG
* * * * * * ** * * ** * **
173408 TGTAAGGAGTGGAGA-CTGTTA-TGAGAATCAATGCTTGCCTTATTTAAGGAATTAA-ATTTGGT
544 TG--A--A-TGAAGATC-ATTACT-ACAATCCATGTTTGTCACATTTGAGGCACGAACA-TAGAC
** ** ** * * * * ** * * * *
173470 TTTAAGGAAAATAAG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATTAATATCATTTATC
601 TTT-ACCAAAATTGGTGGGAAG-AAAGCCTTT-CTTACGAAACCAAAGCATCAATATCGTGTATC
* * * * *** * * * ** **
173533 CTAATGAGAAGAATACGCTTATGAAACC-AAACCATCAATATGTTTTTGGTTCTCAATCTTGAAA
663 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCA-GAA-AAGAATGAGG------A--TT----
* * * * * *
173597 GGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG-GA-ATTAAATTTGGTTTTAAG
714 --AGT-GAGAC---TAT-----TC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCT-AT
* * * * * * * * * * ** * * * * **
173660 GAAAATAAGG--CAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATG
764 CAAAA-ACGGTTGAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATG
** * * *** * * * * * *
173723 AGAA-GAATACGCTTATGAAACCAAACCATCAATATCGTGTATCCTTATGGGAAGACTAAGTTTA
828 A-AAGGAATGTGTTTTTGGTTCCCAATCTTGAA-A---AG-A-----GT-GG-AGACT--G-TTA
* * * ***
173787 TGGTGCCTAATCCGAAAAAGAATGAGGACTAGTGTGACTACTCAAGTTTGTCTTATTTAAGAGAC
877 T-GAG---AAT-C-------AAT---G-C---T-TG----C-C----TTAT-TTA---AGGAATT
* ** * * * *
173852 AAACTTTGATTCT-ATCAAAA-ACGGTTG-GAAGAAATGCTTTTC
909 AAA-TTTGATTTTAAGGAAAATA-GG--GCAAAGAAAAGATTTCC
* ** * *** * * * **** * ** * * *
173894 TTGGGACATCGAAGCATCTATGTTGCGTATCCTAATGA-AAGGAATGTGTTTTTTGTTCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAA-GAATACGTTTATAGTGCCTAATC
* * * * * ** ** * * * * * **
173958 TCGAAAA-GAGTGGAGA-CTATTA-TGAGAATCAATGCTTACCTTATTTAAGGAATTAAATTTGA
65 AC-AAAATGAATGAAGAGC-ATTACT-AGAATCCATGTTTGTCACAATTGAGGCATGAACTTACA
* ** ** * * * * ** ** *
174020 TTTTAAGAAAAGATTTCCATGCAAAAGAAAAATAGTGCCTAATC--ACAAAATGAATGAAGAGCA
127 CTTT-ACCAAA-A-TT-GGTG----GGAAGAA-A--GCCT-TTCTTACGAAACCAA--ACCATCA
* * * * * * * * * * ******
174083 TTA-C-TAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACT-TTACCAAAATTGGTGGG
178 ATATCGT-GTATCC-T-TATG-----A--GAAG-ACTAAGTT-TA-TGGTGCC-TAA-TCCAAAA
* **** * * * * * * * * * * *
174145 AAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTATGAGAGGAC-TATGTTT
228 AAGAATGAGGAT-TTGTGAGA-C-TA--TTC-ATGT-TTGTCTTATT-TAAGA-GACAAAT-TTG
** * ** * ** **
174209 ATAGTGCCTAATCTAGAAAA-GAATG-AGGATTTCTGAGACTATTCAAGTTTGTC-TTATTTAAG
283 AT--T--CT-ATC-A-AAAACGGTTGAAAGA--AAT--G-CTTTTC----TTG-CGACATCAAAG
* * ** ** * * * * * *
174271 AGACAAATTTTGATTTTATCAAAAACGGTTGAAA-GAA-ATGCTTTT-CTT-GCGATATT--AAA
331 CGTC-AA---TG-TCATATC-----CTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* ** * ** ** * *
174330 GCGTCAATGTCACGTATCCTATTGAAAGGAATGC-ATTTTTGGTTCCCAATCTTGAAAAGAGTGG
386 GAGTGGA-G--AC-TGT--TA-TG--A-GAAT-CAATGCTT-G--CCTTAT-TT--AAGGAAT-G
* * * * * * *** *
174394 AGAC--TG-TTATGA-GAATCAAT-GCTTGCCTTATTTAAGGAATGAACTTT-GATTTTAAGGAA
433 A-ACTTTGATTTTAAGGAA--AATAG---GGC--A---AAGAAAAG-A-TTTCCATGCAAAAGAA
* * ** * * * ** * * * **
174453 AATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGA
485 AAT----CATCA-ATATCATTT--ATCCTAAGGAGGAGAAT--A-A--GTTTATACT-----GCC
* * * * * *
174517 GAATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCAC
533 TAATCA---CA-AC-G-----T--GAATGA------AGATCATTACTACAATCCATGTTTGTCAC
* * * *
174582 ATTTGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAA
580 ATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAA
* *
174647 GCTTCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAG
645 GCATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAG
* * ** *
174712 GATTTGTGAGACTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGT
710 GATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGT
* * *
174776 TGAAAGAAATGCTTCTT-TTACGACACCAAAGTGTCAATGTCA--TATACCGTAACGAAAGGAAT
774 TGAAAGAAATGCTT-TTCTTACGACATCAAAGCGTCAATGTCACGTAT-CC-TAATGAAAGGAAT
* * *
174838 TTGTTTTTAGTTCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
836 GTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
*
174903 AAGGAGTTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
901 AAGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
174952 ATGCAAAAAAAAATCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAA-GGAGAAGAATACGTTTATAGTGCCTAATC
* *
175016 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTAACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
* *
175081 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * * * *
175146 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTTTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTT
* *
175211 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* **
175276 ATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAG
324 ATCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
175341 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* * *
175406 ATAGGGCGAAGAAAAGATTTCCAAGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
** ** * * *
175471 ATAAACTTATTTTGCCCAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACAT
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
* ** * *
175536 TTGAGGCACGAACATACACTTTACCAAAATTGGTATGAAGAAAGCCTTTCTTATGAAACCAAACC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* *
175601 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTACAACGA-AAAAGAATGAGG
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTA-ATCCAGAAAAGAATGAGG
* * *
175665 ATTAGTGTGACTATTCATGTTTGTCTTATTTAAGAGAC--ACTTTGATACTATCAAAAACGATTT
711 ATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GTT
* * * * *
175728 G-AAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTCGCGTATCCTACTGAAAAGAATATGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* * *
175792 TTTTGGTTCTCAATCATGAAAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
840 TTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* * * *
175857 AATTAAATTTGGTTTTAAGGAAAGTTGGGCCAAGAAAAGATTTCC
905 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
175902 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGAAGAATACATTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* * * *
175967 CAAAATGAATGAATACCTTTACTAGAATCCATGTTTGTCACAATTGAGGCATGAGCTTACACTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* * *
176032 ACCAAAATTGGTGGGAAGAAAGCCATTCTTACAAAACCAAACCATCAATATCGTGTATCCTTAAG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* * * * *
176097 AGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGATTAGTGTGACTACTCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
* * *
176162 GCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTTTG-AAGAAATGCTTTTCTTGCGAC
261 TCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGAC
* * * * *
176226 ATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAAG
324 ATCAAAGCGTCAATG-T-CATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * *
176291 AGTGGAGACTGTTACGGGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGG--A
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* * * * *
176354 ATAAGGCAAAGAAAAGATTTCCATGTAACAGAAAATCATCAATATCATTTATCCTAATGAGAAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* ** * ** * * **
176419 ATACGTTTATTGTGCCTAATAACAAAATGAATGAATG-CCATTACTAGAATCTGTGTTTGTCACA
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAA-GATCATTACTACAATCCATGTTTGTCACA
* * * * * * * *
176483 ATTGAGGCACGGACTTACACTTTACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAACCAAAC
581 TTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG
* *
176548 CATCAATATCGTGTATCCTTATGGGAAGACTAAGTTTATGGTGCCTAAT-CTGAAAAAGAATGAG
646 CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAG-AAAAGAATGAG
* * * *
176612 GACTAGTGTGACTACTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
710 GATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * ** * *
176677 GGAAGAAATGCTTTTCTTACGACATCAAAGCATCAATGTTGCATATCCTAATGAAAGGAATATGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* * * * * *
176742 TCTTT-GTTCCTAATCTCGAAAAGAGTTGAGACTATTACGAGATTCAATGCTTGCCTTATTTAAG
840 T-TTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* *
176806 GAATTAAATTTGATTTTAAGGAAAATAGGACGAAGAAAAGATTTCC
904 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* **
176852 ATGCAAAAAAAAATCATCAATATCATTTATCCTAACAAGAAGAATACGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* * * * *
176917 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCATAATTGAGGCATAAACTTGCATTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* * * * * * *
176982 ATCGAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACTAAGCCATAAATATCGTATATGCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* * *
177047 AGAAGACTAAGTTTATCGTGCCTAATCCAAAAAAGAATAAGGATTTCTGAGACTATTCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
* *
177112 TCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGATA
261 TCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* **
177177 TTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGA
325 TCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
177242 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
388 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
* *
177307 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATCCATATCATTTATCCTAAGGAGGAGAA
453 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAA
* *
177372 TAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACATT
518 TAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATT
* * * *
177437 TGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCT
583 TGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCA
*
177502 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGAT
648 TCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAGGAT
* * * ** *
177567 TTGTGAGACTAATCATGTTTGTCTTATGTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGTTGA
713 TAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTTGA
* * * *
177631 AAGAAATGCTTCTT-TTACGACACCAAAGTGTCAATGTCA--TATACCGTAACGAAAGGAATTTG
777 AAGAAATGCTT-TTCTTACGACATCAAAGCGTCAATGTCACGTAT-CC-TAATGAAAGGAATGTG
* *
177693 TTTTTAGTTCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
839 TTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
177758 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
904 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
177804 ATGCAAAAGAAAGTCATTAATATTATTTATCCTAATGG-GAAGAATACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAA-GGAGAAGAATACGTTTATAGTGCCTAATC
*
177868 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
* *
177933 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * * * *
177998 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGAGGATTTCTGAGACTATTCATGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTT
* *
178063 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* **
178128 ATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAG
324 ATCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
178193 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* *
178258 ATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* *
178323 ATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCTATGTTTGTCACAT
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
* * *
178388 TTGAGGCATGAACATAGACTTTACTAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * *
178453 TTCAATATCGTGTATCCTTATGAGAAGACTAGGTTTATGGTGCCTAATCCAAAAAAAGAATGAGG
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AGAAAAGAATGAGG
* ** *
178518 ATTTA-TGAGACTAATCATGTTTGTCTTATTTAAGAGATGAA-TGTTGATTCTGTCAAAAACGGT
711 A-TTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGT
* * * *
178581 TGAAAGAAATGCTTCTT-TTACGACACCAAAGTGTCAATGT-A-ATATACCGTAACGAAAGGAAT
774 TGAAAGAAATGCTT-TTCTTACGACATCAAAGCGTCAATGTCACGTAT-CC-TAATGAAAGGAAT
* * * **
178643 TTGTTTTTAGTTCCCAATGTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTTTCTTATTT
836 GTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT
178708 AAGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
901 AAGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
178757 ATGCAAAAGAAAATCATTAATATTATTTATCCTAATGG-GAAGAACACGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAA-GGAGAAGAATACGTTTATAGTGCCTAATC
*
178821 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCACGAACTTACACTT
65 ACAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTT
* *
178886 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCGTGTATTCTTAT
130 TACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTAT
* * * * * * *
178951 GAGAGGACTATGTTTATAGTGCCTAATCCAGAAAAGAACGAGGATTTCTGAGACTATTCAAGTTT
195 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTT
* *
179016 GTCTTATTTAAGAGACAAATTTTGATTTTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAT
260 GTCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGAC
* **
179081 ATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAG
324 ATCAAAGCGTCAATGTCA--TATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
179146 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* *
179211 ATAGGGCATAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* *
179276 GTAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACAT
* * * * * *
179341 TTGAGGCATGAACATGGACTTTACTAAAATTGGTGGGCAGAAAGCCTTCCTTGCGAAACCAAAGC
582 TTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGC
* * *
179406 TTCAATATCGTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTAATCCTA-AAAAG-ATAAAG
647 ATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AGAAAAGAAT-GAG
* * * *
179469 GATTAGT-ATGACAATTCATGTTTGTCTTGTTTTAGAGACAAACTTTGATTCTGTCAAAAACGGT
710 GATTAGTGA-GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * ***
179533 TGAAAGAAATGCTTTTTTTACGACACCAAAGCATCAATGTCTTATATCCTAATGAAAGGAATGTG
774 TGAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTG
* *
179598 TTTTTGGTTCCCAATGTTGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAG
839 TTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * * *
179663 GGATGAAA-TTGATTTTAAGGAAAGTATGGCAAAGAAAAGATTTCC
904 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* *
179708 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGCGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* * *
179773 CAAAATGAATGAAGAGCATTACTAGCATCCATGTTTGTCACAATTGAGACATGAACTTACACTTC
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* *
179838 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATCCTTATG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* * * * * *
179903 GGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGAGTAGTGTGACTACTCAAGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
* * *
179968 TCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACAGTTGGAAGAAATGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACA
* * * * * * **
180033 TCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCTAACCTCAAAAAGA
325 TCAAAGCGTCAATG-T-CATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
180098 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAAAA
388 GTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAA
* * * *
180163 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGAAGAA
453 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAA
* * * ** * * * * * *
180228 TACGTTTATAATGCCTAATAACAAAATGAATGAATG-CCAATACTAAAATCCGTGTTTGTCTCAA
518 TAAGTTTATACTGCCTAATCACAACGTGAATGAA-GATCATTACTACAATCCATGTTTGTCACAT
* * * * *
180292 TTGAGGCACGAGCTTACACTTTA-CAAGAATTGGTGGGAAGAAAGCCTTTCTTACGATACCAAAC
582 TTGAGGCACGAACATAGACTTTACCAA-AATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG
* * * ** *
180356 CATCAATATCATGTATCCCTATGGGAAGACTAAGTTTATGGCACCTAATTC-GAAAAAGAATGAG
646 CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAG-AAAAGAATGAG
* * * *
180420 GACTAGTGTGACTACTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
710 GATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* ** * * ** *
180485 GGAAGAAATGCTTTTCTTGTGATATCAAAGCATCAATGTTGCGTATCCTAAGGAAAGGAATGTGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* * ** * * *
180550 TTTTTGTTCCTAATCCCGAAAAGAGTGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGG
840 TTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
* * *
180615 AATTAAATTTGATGTTAAGGAAAGTTGGGCAAAGAAAAGATTTCC
905 AATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
180660 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGAAGAATACATTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
* * * *
180725 CAAAATGAATGAATACCTTTACTAGAATCCATGTTTGTCACAATTGAGGCATGAGCTTACACTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* * *
180790 ACCAAAATTGGTGGGAAGAAAGCCATTCTTACAAAACCAAACCATCAATATCGTGTATCCTTAAG
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* * * * *
180855 AGAAGACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGATTAGTGTGACTACTCATGTTTG
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
* * *
180920 GCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTTTG-AAGAAATGCTTTTCTTGCGAC
261 TCTTATTTAAGAGACAAA-TTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCTTGCGAC
* * * * *
180984 ATCAAAGCATCAATGTTGCGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAAAG
324 ATCAAAGCGTCAATG-T-CATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * *
181049 AGTGGAGACTGTTACGGGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGG--A
387 AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAA
* * * * *
181112 ATAAGGCAAAGAAAAGATTTCCATGTAACAGAAAATCATCAATATCATTTATCCTAATGAGAAGA
452 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGA
* * * ** * * **
181177 ATACGTTTATAGTGCCTAATAACAAAATGAATGAATG-CCATTACTAGAATCTGTGTTTGTCACA
517 ATAAGTTTATACTGCCTAATCACAACGTGAATGAA-GATCATTACTACAATCCATGTTTGTCACA
* * * * * * * * *
181241 ATTGAGGCACGGACTTACACTATACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAACCAAAC
581 TTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG
* *
181306 CATCAATATCGTGTATCCTTATGGGAAGACTAAGTTTATGGTGCCTAAATCGA-AAAAGAATGAG
646 CATCAATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCT-AATCCAGAAAAGAATGAG
* * * *
181370 GACTAGTGTGACTACTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
710 GATTAGTGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTT
* * * * * *
181435 GGAAGAAATGCTTTTCTTGCGACATCGAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGT
775 GAAAGAAATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGT
* * * * *
181500 TTTTGATTCCCAACCTTGAAAAGTA-TGGAGATTGTTATGAGAATCAGTGCTTGCCTTATTTAAA
840 TTTTGGTTCCCAATCTTGAAAAG-AGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAG
* * *
181564 GAATGAACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAGATTTCC
904 GAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
181610 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
*** * * * * * *
181675 CAACGCGAATGAGGATCATTACTACAATCCATG--TGTCACATTTGAGGCATGAACATAGACTTT
66 CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
* * * * *
181738 ACCAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAATCTTCAATATTGTGTATCCTTATA
131 ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
* *
181803 AGAAAACTAAGTTTATGGTGCCTAATCCGAAAAAGAATGAGGA
196 AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGA
181846 CTAGTGATTC
Statistics
Matches: 19842, Mismatches: 3331, Indels: 2805
0.76 0.13 0.11
Matches are distributed among these distances:
932 24 0.00
933 3 0.00
934 5 0.00
935 12 0.00
936 17 0.00
937 26 0.00
938 204 0.01
939 29 0.00
940 27 0.00
941 24 0.00
942 88 0.00
943 176 0.01
944 651 0.03
945 10 0.00
946 25 0.00
947 20 0.00
948 921 0.05
949 1008 0.05
950 3705 0.19
951 2444 0.12
952 5400 0.27
953 1236 0.06
954 12 0.00
957 6 0.00
958 10 0.00
960 2 0.00
965 8 0.00
966 4 0.00
967 2 0.00
968 2 0.00
969 2 0.00
970 10 0.00
972 2 0.00
973 3 0.00
975 12 0.00
977 4 0.00
978 4 0.00
980 22 0.00
982 22 0.00
983 6 0.00
984 5 0.00
985 7 0.00
986 55 0.00
987 258 0.01
988 24 0.00
989 6 0.00
990 14 0.00
991 14 0.00
992 21 0.00
993 9 0.00
994 26 0.00
995 32 0.00
996 23 0.00
997 34 0.00
998 40 0.00
999 26 0.00
1000 27 0.00
1001 14 0.00
1002 9 0.00
1003 9 0.00
1004 29 0.00
1005 22 0.00
1006 20 0.00
1007 29 0.00
1008 45 0.00
1009 42 0.00
1010 43 0.00
1011 52 0.00
1012 51 0.00
1013 39 0.00
1014 29 0.00
1015 30 0.00
1016 53 0.00
1017 38 0.00
1018 101 0.01
1019 50 0.00
1020 37 0.00
1021 55 0.00
1022 24 0.00
1023 40 0.00
1024 49 0.00
1025 31 0.00
1026 42 0.00
1027 22 0.00
1028 25 0.00
1029 16 0.00
1030 9 0.00
1031 24 0.00
1032 25 0.00
1033 45 0.00
1034 35 0.00
1035 25 0.00
1036 10 0.00
1037 34 0.00
1038 32 0.00
1039 17 0.00
1040 12 0.00
1041 20 0.00
1042 8 0.00
1044 6 0.00
1045 26 0.00
1046 27 0.00
1047 27 0.00
1048 27 0.00
1049 14 0.00
1050 22 0.00
1051 23 0.00
1052 16 0.00
1053 18 0.00
1054 6 0.00
1055 9 0.00
1056 7 0.00
1057 28 0.00
1058 243 0.01
1059 85 0.00
1060 21 0.00
1061 5 0.00
1062 13 0.00
1063 22 0.00
1065 4 0.00
1066 6 0.00
1067 8 0.00
1068 22 0.00
1069 13 0.00
1070 14 0.00
1071 1 0.00
1072 8 0.00
1073 3 0.00
1074 1 0.00
1075 3 0.00
1076 11 0.00
1077 3 0.00
1079 1 0.00
1080 9 0.00
1081 8 0.00
1082 8 0.00
1083 5 0.00
1084 4 0.00
1085 2 0.00
1087 7 0.00
1088 11 0.00
1089 5 0.00
1090 2 0.00
1091 9 0.00
1092 16 0.00
1093 80 0.00
1094 4 0.00
1095 15 0.00
1096 8 0.00
1097 4 0.00
1098 4 0.00
1099 2 0.00
1100 3 0.00
1101 2 0.00
1102 4 0.00
1103 15 0.00
1104 26 0.00
1105 42 0.00
1106 42 0.00
1107 259 0.01
1108 29 0.00
1109 18 0.00
1110 15 0.00
1111 6 0.00
1112 6 0.00
1113 24 0.00
1114 9 0.00
1115 7 0.00
1116 13 0.00
1117 3 0.00
1118 10 0.00
1119 2 0.00
1120 8 0.00
1121 15 0.00
1122 13 0.00
1123 6 0.00
1124 10 0.00
1125 15 0.00
1126 4 0.00
1127 11 0.00
1128 9 0.00
1129 3 0.00
1130 6 0.00
1131 5 0.00
1132 57 0.00
1133 45 0.00
1134 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (949 bp):
ATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGAAGAATACGTTTATAGTGCCTAATCA
CAAAATGAATGAAGAGCATTACTAGAATCCATGTTTGTCACAATTGAGGCATGAACTTACACTTT
ACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTTATG
AGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGAGACTATTCATGTTTG
TCTTATTTAAGAGACAAATTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACAT
CAAAGCGTCAATGTCATATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTG
GAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAG
GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATAA
GTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGA
GGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
ATATCGTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAGGATTAG
TGAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGA
AATGCTTTTCTTACGACATCAAAGCGTCAATGTCACGTATCCTAATGAAAGGAATGTGTTTTTGG
TTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAA
ATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
Found at i:161672 original size:119 final size:119
Alignment explanation
Indices: 161461--161691 Score: 444
Period size: 119 Copynumber: 1.9 Consensus size: 119
161451 ATGTTGAAAA
161461 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
1 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
*
161526 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
66 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
*
161580 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGGAA
1 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
161645 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC
66 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC
161692 ATTTATCCTA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 110 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (119 bp):
GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
Found at i:161886 original size:184 final size:184
Alignment explanation
Indices: 161577--161923 Score: 694
Period size: 184 Copynumber: 1.9 Consensus size: 184
161567 AATATCGTGT
161577 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
1 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
161642 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
161707 AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
131 AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
161761 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
1 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
161826 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
161891 AAGAATACGCTTATGAAACCAAACCATCAATAT
131 AAGAATACGCTTATGAAACCAAACCATCAATAT
161924 CGTGTATCCT
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 163 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (184 bp):
AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
Found at i:170368 original size:119 final size:119
Alignment explanation
Indices: 170157--170387 Score: 444
Period size: 119 Copynumber: 1.9 Consensus size: 119
170147 ATGTTGAAAA
170157 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
1 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
*
170222 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
66 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
*
170276 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGGAA
1 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
170341 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC
66 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC
170388 ATTTATCCTA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 110 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (119 bp):
GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
Found at i:170582 original size:184 final size:184
Alignment explanation
Indices: 170273--170619 Score: 694
Period size: 184 Copynumber: 1.9 Consensus size: 184
170263 AATATCGTGT
170273 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
1 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
170338 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
170403 AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
131 AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
170457 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
1 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
170522 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
170587 AAGAATACGCTTATGAAACCAAACCATCAATAT
131 AAGAATACGCTTATGAAACCAAACCATCAATAT
170620 CGTGTATCCT
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 163 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (184 bp):
AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
Found at i:171937 original size:119 final size:119
Alignment explanation
Indices: 171726--171956 Score: 444
Period size: 119 Copynumber: 1.9 Consensus size: 119
171716 ATGTTGAAAA
171726 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
1 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
*
171791 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
66 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
*
171845 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGGAA
1 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
171910 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC
66 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC
171957 ATTTATCCTA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 110 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (119 bp):
GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
Found at i:172151 original size:184 final size:184
Alignment explanation
Indices: 171842--172188 Score: 694
Period size: 184 Copynumber: 1.9 Consensus size: 184
171832 AATATCGTGT
171842 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
1 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
171907 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
171972 AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
131 AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
172026 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
1 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
172091 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
172156 AAGAATACGCTTATGAAACCAAACCATCAATAT
131 AAGAATACGCTTATGAAACCAAACCATCAATAT
172189 CGTGTATCCT
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 163 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (184 bp):
AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
Found at i:173506 original size:119 final size:119
Alignment explanation
Indices: 173295--173525 Score: 444
Period size: 119 Copynumber: 1.9 Consensus size: 119
173285 ATGTTGAAAA
173295 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
1 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
*
173360 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
66 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
*
173414 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAGGAA
1 GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
173479 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC
66 AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATC
173526 ATTTATCCTA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 110 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (119 bp):
GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAA
AATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCGTGTAAG
Found at i:173720 original size:184 final size:184
Alignment explanation
Indices: 173411--173757 Score: 694
Period size: 184 Copynumber: 1.9 Consensus size: 184
173401 AATATCGTGT
173411 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
1 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
173476 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
173541 AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
131 AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
173595 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
1 AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
173660 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
173725 AAGAATACGCTTATGAAACCAAACCATCAATAT
131 AAGAATACGCTTATGAAACCAAACCATCAATAT
173758 CGTGTATCCT
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 163 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (184 bp):
AAGGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATTAAATTTGGTTTTAAG
GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAG
AAGAATACGCTTATGAAACCAAACCATCAATATGTTTTTGGTTCTCAATCTTGA
Found at i:185039 original size:159 final size:158
Alignment explanation
Indices: 184876--185972 Score: 364
Period size: 159 Copynumber: 6.9 Consensus size: 158
184866 AAACGGTTGG
* * * *
184876 AAGAAATGCTTTTCTGGCGACATCAAAGCATCAATGTTGCGTATCCTAAGGAAAGGAATGTGTTT
1 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATATCGCGTATCCTAAGGAAA-GAATATGTTT
* * *
184941 TTTGTTCCTAATCCCGAAAAGAGTGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAA
65 ATTGTACCTAATCCCGAAAAGAATGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAA
*
185006 TTAAATTTGATTTTAAGGAAAATTGG-GCA
130 TTAAATTTGATTTT-AGCAAAATTGGTGCA
* * * * * * ** * * *** * *
185035 AAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAACGAGAAGAATACGTTT
1 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATATCGCGTATCCTAAGGA-AAGAATATGTTT
* * * * * ** * * * ** ** * * *
185100 ATAGTGCCTAATCAC-AAAATGAATGAATACCCTTACTAGAATCCATGTTTGTCACAATTGAGGT
65 ATTGTACCTAATCCCGAAAA-GAATGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGA
* * ** * * **
185164 ATGAACTTACACTTTACCAAAATTGGTGGG
129 ATTAAATTTGATTTTAGCAAAATTGGTGCA
* * * * * * * * * *
185194 AAGAAA-GCCTTTCTTACGATACCAAACCATCAATATCGTGTATCCTTATGGGAAGACTAAGTTT
1 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATATCGCGTATCC-TAAGGAAAGAATATGTTT
* * * * ** * * * **
185258 ATGGCACCTAAT-CTGAAAAAGAAT-GAGGACTAGTGTGACTACTCAA-GTTTGTCTTATTTAA-
65 ATTGTACCTAATCCCG-AAAAGAATGGA-GACTATTACGA-GAATCAATGCTTACCTTATTTAAG
* * * *
185319 GAGA-TAAACTTTGATTCTATCAAAAATGGTTG-G
127 GA-ATTAAA-TTTGATTTTAGCAAAATTGG-TGCA
* * * *
185352 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTGCATATCCTAAGGAAAGGAATGTGTTT
1 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATATCGCGTATCCTAAGGAAA-GAATATGTTT
* * * * *
185417 TTTGTCCCTAATCCCGAAAAGAGTGGAGACTATTACAAGAATCAATGCTTACTTTATTTAAGGAA
65 ATTGTACCTAATCCCGAAAAGAATGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAA
*
185482 TTAAATTTGATTTTAAGGAAAATTGG-GCA
130 TTAAATTTGATTTT-AGCAAAATTGGTGCA
* * * * * ** * * *** * *
185511 AAGAAAAGATTTTCATGCAAAAGAAAATCATCCATATCATTTATCCTAACGAGAAGAATACGTTT
1 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATATCGCGTATCCTAAGGA-AAGAATATGTTT
* * * * * * * ** ** * *
185576 ATTGTGCCTAATCAC-AAAATGAATGAATACCT-TTACTAGAATCCATGTTTGTCACAATTGAGG
65 ATTGTACCTAATCCCGAAAA-GAATGGAGA-CTATTACGAGAATCAATGCTTACCTTATTTAAGG
* ** * ** * **
185639 CACGAACTTACACTTTA-CAAAAATTGGTGGG
128 AATTAAATTTGATTTTAGC-AAAATTGGTGCA
* ** * * * ** * * * *
185670 AAGAAA-GCCTTTCTTATGAAACCAAACCATCAATATCTTGTATCCTTATGGGAAGACTAAGTTT
1 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATATCGCGTATCC-TAAGGAAAGAATATGTTT
* * * ** * * **
185734 ATGGTGCCTAAT-CCGAAAAAGAAT-GAGGACTAGTGTGACTACTCAA--CTTTGTCTTATTTAA
65 ATTGTACCTAATCCCG-AAAAGAATGGA-GACTATTACGA-GAATCAATGC-TTACCTTATTTAA
* * * ** * *
185795 GAGACA--AACTTTGATTCTATCAAAAACGATTG-G
126 G-GA-ATTAAATTTGATTTTAGCAAAATTG-GTGCA
* ** * *
185828 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATGTTACGTATCCTAATGAAAGGAATGTGTTT
1 AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATATCGCGTATCCTAAGGAAA-GAATATGTTT
* * * * * * * *
185893 TTTGTTCGTAATCTCGAAAAGAGTAGAGACTATTACGAGAATCAGTGCTTGCCTTATTTAAGGAA
65 ATTGTACCTAATCCCGAAAAGAATGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAA
*
185958 TTAAATTAGATTTTA
130 TTAAATTTGATTTTA
185973 AGGAAAATAG
Statistics
Matches: 649, Mismatches: 245, Indels: 88
0.66 0.25 0.09
Matches are distributed among these distances:
157 9 0.01
158 221 0.34
159 389 0.60
160 30 0.05
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (158 bp):
AAGAAATGCTTTTCTTGCGACATCAAAGCATCAATATCGCGTATCCTAAGGAAAGAATATGTTTA
TTGTACCTAATCCCGAAAAGAATGGAGACTATTACGAGAATCAATGCTTACCTTATTTAAGGAAT
TAAATTTGATTTTAGCAAAATTGGTGCA
Found at i:199135 original size:42 final size:42
Alignment explanation
Indices: 199080--199198 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
199070 TTCTTCTCTC
* *
199080 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
199122 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
199164 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
199199 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:199139 original size:12 final size:11
Alignment explanation
Indices: 199113--199188 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
199103 TCTATTATCT
*
199113 CTCCTGTCTCTC
1 CTCCTATCTC-C
199125 CTCCTATCATCC
1 CTCCTATC-TCC
199137 CTCCTATCT--
1 CTCCTATCTCC
*
199146 CTACTATCT--
1 CTCCTATCTCC
*
199155 CTCCTGTCTCTC
1 CTCCTATCTC-C
199167 CTCCTATCATCC
1 CTCCTATC-TCC
*
199179 CTCCTCTCTC
1 CTCCTATCTC
199189 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:199140 original size:24 final size:24
Alignment explanation
Indices: 199104--199189 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
199094 CCTCCTCTCT
* *
199104 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
199128 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
199149 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
199170 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
199190 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:199164 original size:18 final size:18
Alignment explanation
Indices: 199095--199165 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
199085 CCTGTCATCC
* *
199095 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
199113 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
199135 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
199155 CTCCTGTCTCT
1 CTCCTGTCTCT
199166 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:201713 original size:476 final size:476
Alignment explanation
Indices: 200816--204802 Score: 5645
Period size: 476 Copynumber: 8.4 Consensus size: 476
200806 TTTTCATCAA
* *
200816 AATGTGTTTTTGGTTCCCAATCTCGAAAAAAGTGGAGATTGTTACGAGAATCAATGCTTGCCCTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
* * *
200881 TTTAAGGAATTAAATTTGATGTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * * * * * *
200946 TCATCGATATCATTTATCCTAATGAGAAGAACACGTTTACAGTGCCTAATTACAAAATGAATGAA
131 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAT
* * * * * * *
201011 GA-C-CCTTTCTGGAATCCATGTTTGCCAGAATTGAGGCACGAAC-TTGCACTTTACCGAAATTG
196 GATCACC--ACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAG-ACTTTACCAAAATTG
* *
201073 GTGGGAAGAAAGCCTTTCTTATGAAACCAAACCATCAATATCATGTATGCTTATAAGAAGACTAA
258 GTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAA
* *
201138 GTTTATGGTGCCTAATCCAAAAAGGAATGAGGATTTTTGTGACTATTCATGTTTGTCTTATTTAA
323 GTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAA
* * * * *
201203 GAGGCAAACTTTGATTCTATCAAAAACAGTTGAAAGAAATGCTTTTCATGCGACCTTGAAGCGTC
388 GAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTC
* * *
201268 AATGTCTCATATCCTAATGAAAGG
453 AATGTCGCGTATCCTATTGAAAGG
* *
201292 AATGTGTTTTTGGTTCACAATCTCGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
* * *
201357 TTTAAGGAATGAGCTTTGATTTTATGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* *
201422 TCATCCATATCATTTATCCTAAGGAGGAGAATATGTTTATACTGCCCAATCACAAAGTGAATGAT
131 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAT
* * *
201487 GGTCGCCACTAGAATCCATGTTTGTCACATTT-ATGGCACGAACGTAGACTTTACCAAAATTGGT
196 GATCACCACTAGAATCCATGTTTGTCACATTTGA-GGCACGAACATAGACTTTACCAAAATTGGT
* * * * * * * *
201551 GGGAAGAAAGCATATCTTACAAAACCAAAGCATCAACATCGTGTATGATTGTGAGAAGACTAAGT
260 GGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAAGT
* * *
201616 TTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTAACTACTCATGTTTGTCTTATTTAAGA
325 TTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAGA
* * *
201681 GACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATACTTTTCTTGCAACATTAAAGCGTCAA
390 GACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAA
*
201746 TGTTGCGTATCCTATTGAAAGG
455 TGTCGCGTATCCTATTGAAAGG
* * * *
201768 ATTGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATTCTTGACTTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
* * *
201833 TTTATGGAATGAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCAAGCAAAAGAAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
201898 TCATCCATATAATTTATCCTAAGGAGGAGAATAAGTTTATACTACCTAATCACAACA-TGAATCC
131 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAA-AGTGAAT-G
** *
201962 AT--T----ACTAGAAAGCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCAAAATTGG
194 ATGATCACCACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGG
** *
202021 TGGGAAGAAAG-CTTTCTTACGAAACCAAACCATCAATATTGTGTATGCTTATGAGAATACTAAG
259 TGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAAG
*
202085 TTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTTTTATTTAAG
324 TTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAG
*
202150 AGACAAACTTTGATTCTATCAAAAACAGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCA
389 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCA
202215 ATGTCGCGTATCCTATTGAAAGG
454 ATGTCGCGTATCCTATTGAAAGG
* * *
202238 AATGTATTTTTGGTTCCCAATCTCGTAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
*
202303 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
202368 TCATCCATATCATTTATCCTAAGGAGGAGAATCA---CA-A-TG-----T--GAAA--GAA-GAT
131 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAT
* * * *
202418 CATTACCAC---AATCCATGTTTGTCACATTTGAGGCATGAACATAGACTTTGCCAAAATTGGTG
196 GATCACCACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTG
* * * *
202480 GGAAGAAAGCCTTTCTTTCGAAACAAAACCATCAATATCGTGTATGCCTAT------ACTAAGTT
261 GGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAAGTT
** * * *
202539 TATGGTGCCTAATCTGAAAAAGAATAAGGATTTCTGTGACTATTCATTCATCTTTGTCTTATTTA
326 TATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGAC---T-ATTCATGTTTGTCTTATTTA
* * * *
202604 AGAGGCAAAATTTGATTCTATCAAAAATGGCTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGT
387 AGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGT
202669 CAATGTCGCGTATCCTATTGAAAGG
452 CAATGTCGCGTATCCTATTGAAAGG
* * ** *
202694 AATGTGCTTTTGGTTCCCAATCTCGAAAAGAATGGAGGCTATTACGAGAATCAATGCTTGCCTTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
* * * **
202759 TTTAAGGAATTAAATTTGATTTTAAGGAAAACT-GGGCAAAGAAAAGATTTCCTTGTGAAAGAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * ** * *
202823 ATCATCAATATCATTTGTCCTAATGAGAAGAATACA-TTTGCAGTGCCTAATCACAAAATGAATG
130 ATCATCCATATCATTTATCCTAAGGAGGAGAATA-AGTTTATACTGCCTAATCACAAAGTGAATG
* * * * * * * *
202887 AAGACCACTACTAGAATCCATGTTTGTCACAATTGAGGAACAAACTTAGACTTTACTAAAATTGG
194 ATGATCACCACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGG
* * * * *
202952 CGGGAAGAAAGCCTTTCTTACTAAACCAAACCATTAGTATCATGTATGCTTATGAGAAGAATAAG
259 TGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAAG
* * * *
203017 TTTATGGTGCCTAATCCAAAAAAGAATAAGGATTTCTCTCACTATTCATGTTTGTCTTATTTAAG
324 TTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAG
* * *
203082 AGACAAACTTTGATTCTATCAAAAACGGTTAAAAGAAATGCTTTTCTTGCAACATTAAAGCATCA
389 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCA
* *
203147 ATGTCACGTATCCTATTAAAAGG
454 ATGTCGCGTATCCTATTGAAAGG
* * * * * * *
203170 AGTGCGTTTTTGGTTCCCATTCTCGAAAAGGGTGGAGATTGTTATGAGAATAAATGCATGCCTTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
* * *
203235 TTTAAGGAATAAACTTTGATTTTAGGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
203300 TCATCCATACCATTTATTCTAAGGAGCAGAATAAGTTTATACTGCCTAATCACAATA-TGAATGA
131 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAA-AGTGAATGA
* ** * *
203364 AGATCATTACTACAATCCATGTTTGTCACATTTGAGGCAGGAACATAGACTTTACCAAAATTGGT
195 TGATCACCACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGT
* * *
203429 GAGAAGAAAGCCTTTCTTACGAAACCAAACCTTCAATATCATGTATGCTTATGAGAAGAGTAAGT
260 GGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAAGT
*
203494 TTTTGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAGA
325 TTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAGA
* * *
203559 GACAAACTTTAATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATCAATGCGTCAA
390 GACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAA
203624 TGTCGCGTATCCTATTGAAAGG
455 TGTCGCGTATCCTATTGAAAGG
* *
203646 AATGTGTTTTTGGTTCCCAATCACGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
* * *
203711 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGGAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* ** * *
203776 TCATCCATATCATTTAACCTAACAAGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAA
131 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAT
** *
203841 GATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTG
196 GATCACCACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTG
* * *
203906 GGAAGAAAGCTTTTTTTACGAAACCAAACCATCAATATCATGTATCCTTATGAGAAGACTAAGTT
261 GGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAAGTT
* * *
203971 TATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTAACTACTCATGTTTGTCTTATTTAAGAG
326 TATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAGAG
* * *
204036 ACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATACTTTTCTTGCAACATTAAAGCGTCAAT
391 ACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAAT
*
204101 GTTGCGTATCCTATTGAAAGG
456 GTCGCGTATCCTATTGAAAGG
* * * *
204122 ATTGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTATGAGAATCAATTCTTGACTTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
*
204187 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
204252 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCAC-AA-TG--TGA-
131 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAT
** * * *
204312 -ATCCATTACTAGAATGCATGTTTGGCACATTTGAGGCACAAACATAGACTTTACCAAAATTGGT
196 GAT-CACCACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGT
**
204376 GGGAAGAAAG-CTTTCTTACGAAACCAAACCATCAATATTGTGTATGCTTATGAGAAGACTAAGT
260 GGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAAGT
*
204440 TTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTTTTATTTAAGA
325 TTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAGA
204505 GACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAA
390 GACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAA
204570 TGTCGCGTATCCTATTGAAAGG
455 TGTCGCGTATCCTATTGAAAGG
* *
204592 AATGTATTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTA
1 AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
*
204657 TTTAAGGAATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
66 TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* *
204722 TCATCCATATCATTTATCCTAAGGAGGAGAATATGTTTATACTGCCCAATCACAAAGTGAATGAT
131 TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAT
* *
204787 GGTCGCCACTAGAATC
196 GATCACCACTAGAATC
204803 AATATCATGT
Statistics
Matches: 3127, Mismatches: 330, Indels: 109
0.88 0.09 0.03
Matches are distributed among these distances:
452 44 0.01
454 2 0.00
455 1 0.00
456 249 0.08
457 60 0.02
458 39 0.01
460 4 0.00
461 2 0.00
465 1 0.00
466 2 0.00
467 1 0.00
468 3 0.00
470 712 0.23
471 139 0.04
472 6 0.00
474 94 0.03
475 14 0.00
476 1701 0.54
477 8 0.00
478 2 0.00
480 43 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
AATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTGTTACGAGAATCAATGCTTGCCTTA
TTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAT
GATCACCACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTG
GGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTTATGAGAAGACTAAGTT
TATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAGAG
ACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAAT
GTCGCGTATCCTATTGAAAGG
Found at i:205134 original size:394 final size:394
Alignment explanation
Indices: 204406--205179 Score: 1219
Period size: 394 Copynumber: 2.0 Consensus size: 394
204396 AAACCAAACC
** * *
204406 ATCAATATTGTGTATGCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGA
1 ATCAATATCATGTATGCCTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGA
* * * * *
204471 TTTGTGTGACTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGA
66 TTTCTGTGACTATTCATCTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAAAAACGGATGA
204536 AAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTATTT
131 AAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTATTT
* *
204601 TTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAA
196 TTGGTTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGAA
* * *
204666 TGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATA
261 TGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * *
204731 TCATTTATCCTAAGGAGGAGAATATGTTTATACTGCCCAATCACAAAGTGAATGATGGTCGCCAC
326 TCATTTATCCTAAGGAGAAGAATACGTTTATACTGCCCAATCACAAAATGAATGATGGTCGCCAC
204796 TAGA
391 TAGA
* **
204800 ATCAATATCATGTATGCCTATGAGAATACTAAGTTTATGGTGCCTAATCTGAAAAAGAATAAGGA
1 ATCAATATCATGTATGCCTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGA
*
204865 TTTCTGTGACTATTCATCTTTGTCTTATTTAAGAGGCAAAATTTGATTCTATCAAAAACGGATGA
66 TTTCTGTGACTATTCATCTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAAAAACGGATGA
*
204930 AAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTT
131 AAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTATTT
* * *
204995 TTGGTTTCCAATCTCGAATAGAATGGAGGCTATTACGAGAATCAATGCTTGCCTTATTTAAGGAA
196 TTGGTTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGAA
* **
205060 TTAAATTTGATTTTAAGGAAAACT-GGGCAAAGAAAAGATTTCC-TCGTGAAAGAAAATCATCAA
261 TGAAATTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTCCAT-GCAAAAGAAAATCATCAA
* * ***
205123 TATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTTGTCACAAAATGAATGA
324 TATCATTTATCCTAAGGAGAAGAATACGTTTATACTGCCCAATCACAAAATGAATGA
205180 AGACCATTAC
Statistics
Matches: 345, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
393 1 0.00
394 343 0.99
395 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (394 bp):
ATCAATATCATGTATGCCTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGA
TTTCTGTGACTATTCATCTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAAAAACGGATGA
AAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTATTT
TTGGTTCCCAATCTCGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGCCTTATTTAAGGAA
TGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
TCATTTATCCTAAGGAGAAGAATACGTTTATACTGCCCAATCACAAAATGAATGATGGTCGCCAC
TAGA
Found at i:211497 original size:475 final size:476
Alignment explanation
Indices: 209325--221167 Score: 16429
Period size: 476 Copynumber: 25.0 Consensus size: 476
209315 AATGTCGTGT
209325 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* *
209390 TCCTTGCAAAAGAAAATCATCCATATCATTTATCGTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * * *
209455 TCACAATGTGAAAGAAGATCATTACCACAATCCATGCTTGTCACATTTGAGGCATGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * * * *
209520 TTTGCCAAAATTGGAGGGAAGAATGCCTTTCTTTCGAAACCAAACCATCAATATCGTGTATGCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * * * * *
209585 ATGAGAATACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGAGTTCTGTGACTATTCATCT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
*
209650 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCATGCG
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * * * * * *
209715 ACCTTGAAGCGTCAATATCTCATATCCTAATGAAAGGAATGTGTTTTTGGTTCTCAATCTCGAAG
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
* * *
209780 AGAGGGGAGACTGTTACGAGA
456 AGAGTGGAGATTGTTATGAGA
209801 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * ** * * ** * *
209866 TCCATACAAAAGAAAATCATCCATATCCTTTATCCTAATAAGAAGACTTTGTTTATAGTGCTTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * * * * * * * *
209931 ACACAATGTAAAAGAAGATCATTACTACAATCCATCTTTGCCACAATTGAGGCATGAACTTACAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* *
209996 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCGTCAATATCATGTATCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * * *
210061 GA-GAGAAGTCTAAGTTTATGGTGCCTAAT-CAGAAAAAGAATGAGGATTAGTGTAACTACTCAT
261 -ATGAGAAGACTAAGTTTATGGTGCCTAATCCA-AAAAAGAATGAGGATTTGTGTGACTATTCAT
* * * * *
210124 GTCTATCTTATTTAAGGGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATACTTTTCTTG
324 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTG
* * * * * * *
210189 CGACATCAAAGCATCAATGTCGCATGTCCTATTGAAAAGAATGTGTTTTTGGTTCCCTATCTCAA
389 CGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGA
210254 AAAGAGTGGAGATTGTTATGAGA
454 AAAGAGTGGAGATTGTTATGAGA
* *
210277 ATCAATGCTTGACTTATTTAAAGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* *
210342 TCCAAGCAAAAGAAAATCATCCATATCATCTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * **
210407 TCACAATGTGAAT-----CCATTACTAGAATGCATGTTTGGCACATTTGAGGCATTAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * * * *
210467 TTTACCAAAATTGGT-GGATGAAAG-CATACTTACAAAACCAAACCATCAATATTGTGTATCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* *
210530 ATGAGAAGACTAAGTTTATGGTGCCTAAT-CAAAAAGGAATGAGGATTTTTGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * *
210594 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATACTTTGCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* *
210659 ACATTAAAGCGTCAATGTTGCGTATCTTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
210724 AGAGTGGAGATTGTTATGAGC
456 AGAGTGGAGATTGTTATGAGA
* * *
210745 ATCAATGCTTGACTTATTTAAAGAATGAACTTTGATTTTAAGGAAAATA-GGCGAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
210809 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* *
210874 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATGGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
*
210939 TTTACCAAAATTGGTGGGAAGAAA-CCTTTCTTACGAAACCAAACCATCAATATCGTGTATGCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
*
211003 ATGAGAAGACTACGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* ** * *
211068 TTGTTTTATTTTGGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGTG
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * *
211133 ACATTAAAGCGTCAATGTCGGGTATCCTATTGAAAGGAATGTATTTTTGGTTCCCAATCTCGTAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
211198 AGTGTGGAGATTGTTATGAGA
456 AGAGTGGAGATTGTTATGAGA
*
211219 ATCAATGCTTTCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
211284 TCCATGCAAAAGAAAGTCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* *
211349 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACCTTTGAGGCACGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * * * *
211414 TTAACCAAAATTGGTGGGAAGGAAG-CTTTCTCACGAAACTAAACCATCAATATCATGTATCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * * ** * * *
211478 ATGAGAAAACTAAGTTTATGGCGGCTAATCCTTAAAAGAATGAGGATTAGTATGACAATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * *
211543 TTGTCCTATTTTAGAGACAAACTTTGATTCTGTCAAAAACGGTTGGAAGAAATGCTTTTCTTGCG
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * ** * *
211608 ACATCAAAGCATCAATGTTACGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTCGAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
211673 AGAGTGGAGACTGTTATGAGA
456 AGAGTGGAGATTGTTATGAGA
* * * *
211694 ATCAATGCTAGACTTATTTAAGGAATGAACTTTGATTTTAATGAAAATAAGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
211759 TCCAAGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * * * * *
211824 TCACGACGTGAAT-----CCATTCCTAGAATGCATGTTTGGCATATTTGAGGCACGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * **
211884 TTTACCAAAATTGGT-GGATGAAAG-CATTCTTACGATGCCAAACCATCAATATCGTGTATCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* *
211947 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAGGAATGAGGATTTTTGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* *
212012 TTGTCTTATTCAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCATT-T
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTC-TTGC
* * * * * *
212076 GACCTTGAAGCGTCAATGTCTCGTATCCTAATAAAAGGAATGTGTTTTTGATTCCCAATCTCGAA
390 GACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAA
* *
212141 AAGAGTGGAGACTGTTACGAGA
455 AAGAGTGGAGATTGTTATGAGA
* * * *
212163 ATCAATGCTTGCCTTTTTTAAGGAATGAGCTTTGATTATAAGGAAAATAGGGCAAATAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* *
212228 TCCATGCAAAAGAAAATCATCTATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTACCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * *
212293 TCACAATGTGAATGAAGATCATTACTAGAATGCATGTTTGCCACTTTTGAGGCATGAA-ATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * *
212357 TTTACCAAAATTGGT-GGATGAAAG-CATTCTTACGAAGCCAAACCATCAATATCGTGTATCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* *
212420 ATGAGAAGACTAAGTTTATGGTGCCGAATCCAAAAAAGAATGAGGATTTGTATGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * *
212485 TTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGTG
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * **
212550 ACATTAAAGCCTCAATATCGCGTATCCTATTGAAAGGAATGTATTTTTGGTTCCCAATCTCGTTA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
212615 AGAGTGGAGATTGCTATGAGA
456 AGAGTGGAGATTGTTATGAGA
*
212636 ATCAATGCTTGCCTTATTTAAGGAATGGACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
212701 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATGCTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * *
212766 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCATGAACATAAAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
** *
212831 TTTACCAAAATTGGTTAGAAGAAA-CCTTTCTTACGAAACCAAACCATCAATATCGTGTATGCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
*
212895 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGCGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * *
212960 TTGTTTTATTTAAGAGACAAGCTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * * *
213025 AAATTAAAGTGTCAATGTCGCATATCCTATTGAAAGGAATGTATTTTTGGTTCCCAATCTCGTAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
213090 ACAGTGGAGATTGTTATGAGA
456 AGAGTGGAGATTGTTATGAGA
*
213111 ATCAATGCTTGACTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
213176 TCCAAGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * *
213241 TCACAACGTGAAT-----CCATTACTAGAATGCATGTTTGGCACATTTGAGGCACGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * *
213301 TTTACCAAAATTGGT-GGATGAAAG-CATACTTACGAAACCAAACCATCAATATCGTGTATCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* *
213364 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAGGAATGAGGATTTTTGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * *
213429 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATACTTTGCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * *
213494 ACATTAAAGCGTCAATGTTGTGTATCTTATTGAAAGGAATGTGTTTTTGGTTCCCAACCTCGAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
213559 AGAGTGGAGATTGTTATGAGA
456 AGAGTGGAGATTGTTATGAGA
* *
213580 ATCAATGCTTGACTTATTTAAGGAATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
213645 TCCATGCAAAAGAAAATCATCCATATCGTTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
*
213710 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCACGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * *
213775 TTTGCCAAAATTGGTGGGAAGAAA-CGTTTCTTACGAAACCAAACCATCAATATCGTGTATGCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* *
213839 ATGAGAAGACTAAGTTTATGGTGCCGAATCCAAAAAAGAATGAGGATTTGTATGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * *
213904 TTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTTGTG
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * **
213969 ACATTAAAGCCTCAATATCGCGTATCCTATTGAAAGGAATGTATTTTTGGTTCCCAATCTCGTTA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
214034 AGAGTGGAGATTGCTATGAGA
456 AGAGTGGAGATTGTTATGAGA
214055 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
214120 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * * * *
214185 TCACACTGTGAAAGAAGATCATTACCACAATCCCTGTTTGTCACATTTGAGGCATGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * * *
214250 TTTGCCAAAATTGGTGGGAAGAAAGCCTTTCTTTCGAAACCAAACCATCAATATCGTGTATGCTG
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * * * *
214315 ATGAGAATACTAAGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTTCTATGACTATTCATCT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * *
214380 TTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTTGAAGGAAATGCTTTTCATGCG
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * *
214445 ACCTTAAAGCGTCAATGTCTCGTATCCTAATGAAAGGAATGTGCTTTT-G---CCAATCTCGAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
* *
214506 AGAGTGGAGACTGTTACGAGA
456 AGAGTGGAGATTGTTATGAGA
*
214527 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * *
214592 TCCCTGCAAAAGACAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTACCCAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * ** * * * *
214657 TCACAAAGTGAATGATGGTCACCACTAGAATCCATGTTTGTCACATCTGTGGCAGGAACGTAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * * * *
214722 TTTACCAAAATTGGTGGGAAGAAAGCATTTCTTACAAAACCAAAGCATCAACATCGTGTATCATT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * * *
214787 GTGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTAACTACTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * *
214852 TTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTTGAAAGAAATACTTTTCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* *
214917 ACTTTAAAGCGTCAATGTTGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
214982 AGAGTGGAGATTATTATGAGA
456 AGAGTGGAGATTGTTATGAGA
*
215003 ATCAATGCTTGACTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* *
215067 TCCAAGCGAAAGAAAATCATCCA-ATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * *
215131 TCACAACGTGAAT-----CCATTACTAGAATGCATGTTTGGCACATTTGAGGCACGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * *
215191 TTTACCAAAATTGGT-GGATGAAAG-CATACTTACGAAACCAAACCATCAATATCGTGTATCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* *
215254 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAGGAATGAGGATTTTTGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * *
215319 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAATACTTTGCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * *
215384 ACATTAAAGCATCAATGTTGCGTATCTTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
215449 AGAGTGGAGATTGTTATTAGA
456 AGAGTGGAGATTGTTATGAGA
* *
215470 ATCAATGCTTGACTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCGAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
215535 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* *
215600 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGGCACATTTGAGGCAGGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
*
215665 TTTACCAAAATTGGTGGGAAGAAA-CCTTTCTTACGAAACCAAACCATCAATATCGTGTATGCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* *
215729 ATGAGAAGACTAAGTTTATGGTGCTTAATCCAAAAAATAATGAGGATTTGTGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * *
215794 TTGTTTTATTTCAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * * *
215859 ATATTAAAGTGTCAATGTCACGTATCCTATTGAAAGGAATGTATTTTTGGTTCCCAATCTCGTAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
215924 AGTGTGGAGATTGTTATGAGA
456 AGAGTGGAGATTGTTATGAGA
*
215945 ATCAATGCTTGCCTTATTTAAGGAATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
216010 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAGGGAGGAGAATAAGTTTATACTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * *
216075 TCACAATGTGAAAGAAGATCATTACCACAATCCATGTTTGTCACATTTGAGGCATGAACATAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* *
216140 TTTGCCAAAATTGGTGGGAAGAAAGCCTTTCTTTCGAAACCAAACCATCAATATCGTGTA-CGCT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATC-CT
* * * * *
216204 TATGAGAATACTAAGTTTATGGTGCCTAATCCGAAAAAGAATAAGGATTTCTGTGACTATTCATC
260 TATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATG
* *
216269 TTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTCTT-TTA
325 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTT-TTCTTG
** * *** * * *
216333 CGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGATTGTGTTTTTGGTTCCCAAGT-TTG
389 CGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAA-TCTCG
* *
216397 AAAAGAGTGGAGACTGTTAGGAGA
453 AAAAGAGTGGAGATTGTTATGAGA
* * * *
216421 AACAACGCTTGCCTTATTTAAGGGATGAA-TTTGATTTTAAGCAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * ** * * ** * *
216485 TCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGAAGACTTTGTTTATAGTGCTTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * * * * * * *
216550 TCACAACGTAAAAGAAGATCATTACTACAATCCATGTTTGCCACAATTGAGGCATGAACTTACAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * *
216615 TTTACCAAAATTGTTGGGAAGAAAGCCTTTCTTACGAAACCAAACCGTCAATATCATGTATCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
** * ** * * * *
216680 GCGAGAAGTCTAAGTTTATGGTGCCTAATCTGAAAAACAATGAGGATTAGTGTGACTACTCATCT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * * *
216745 TTGTCTTATTTAAGAGACAAACATTAATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTCCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * * * * *
216810 ACATCAAAGCATCAATGTTGTGTATCCTAATGAAAGGAATGTGTTTTTTGTTCCCAATCTTGAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
* * *
216875 AGAGTGGAGACTGTTACGTGA
456 AGAGTGGAGATTGTTATGAGA
* * *
216896 ATCAATGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAAAATAGGGCAATGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * *
216961 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
** * * * * *
217026 TCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGTCACAATTAAGGCACGAACTTACAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* **
217091 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTGTGTTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * * * *
217156 ATGATAAGACTAAGTTTATGGTGCTTTATCCAAAAAAGAATAAGGATTTTTGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * *
217221 TTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTTGAAATAAATGCTTTTCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * *
217286 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAAGAATGTGTTTTTGGTTCCCAGTCTCAAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
217351 AGAGTGGAGATTGTTATGAGA
456 AGAGTGGAGATTGTTATGAGA
* *
217372 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTACGGAAAATAGTGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * *
217437 TCCATGCAAAAGAAAATCATCCATATCGTTTATCCTAAAGAGGACAATAAGTTTATA-TGACCTA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTG-CCTA
* * ***
217501 ATCACAACGTGAATGAAGATCATTACTACAATCCATGTTTGTCAC---T-----AC--A-ATCCC
130 ATCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGA
* * * * * * * *
217555 CTGGTGCCAGAAATTGGTGGGAAAAAAGCCTTTCTTACGAAATCGAAGCTTCATTATCGTGTATC
195 CT-TTACCA-AAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATC
* * * * * *
217620 CTGATGAGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACAATTCA
258 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * *
217685 TGTTTGTCTTATTTTAGAGATAAACTTTGATTCTATCAAAAACGGTCGAAAGAAATGCTTCTT-T
323 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTT-TTCT
** ** * *** * * * * * *
217749 TATGACACCAAAGCGTCAATATCATATATCCTAATGAAATGAATGCGTTTTTGGTTCTCAATGTT
387 TGCGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* *
217814 GAAAAGAGTGGAGACTGTTACGAGA
452 GAAAAGAGTGGAGATTGTTATGAGA
217839 ATCAATGCTTGCCTTATTTAA-GAGATGAA-TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
1 ATCAATGCTTGCCTTATTTAAGGA-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * ** * * ** * *
217902 TTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAATAAGAAGACTTTGTTTAAAGTGCCTA
65 TTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTA
* * * * * * * *
217967 ATCATAAAGTAAATGAAGATCATTACTACAATCCATGTTTGCCACAATTGAGGCATGAACTTAGA
130 ATCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGA
* * *
218032 CTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAACGATCAATATCGTGTATCCT
195 CTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCT
* * * * * *
218097 TATGAGAAGAATAAGTTTATGGTGCCTAATCTAGAAAAGAATGAGGATTAGTATGGCTATTCATG
260 TATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATG
*
218162 TTCGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGC
325 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGC
* * * * *
218227 GACATTAAAGCATCAATGTCGCGTATCCTATTGAAAAGAATGTGTTTTTGGCTCCTAATCTTGAA
390 GACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAA
* * *
218292 AAAAATGGAGATTGTTATGTGA
455 AAGAGTGGAGATTGTTATGAGA
* * *
218314 ATCAGTGCTTGACTTATTTAAGGAATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
** * * * * * *
218379 TCCACACAAAAG-AAATCATCAATATCATATATCCTAATGG-GAAGAATACGCTTGT-CGTGCCT
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA-GGAGGAGAATAAGTTTATAC-TGCCT
** * * * * *
218441 AATCACAAAATGAATGAAGATCATTACTACAATCCATTTTTGCCACAATTGAGGCACGAACTTAG
129 AATCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAG
* *
218506 ACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAGCCAAACGATCAATATCGTGTATCC
194 ACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCC
* * * *
218571 TCATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAAGATTAGTGTGACTATTCAT
259 TTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCAT
* * * * * * *
218636 GTTCGTCTTATTTAAAAGACAAACTTTGATTCTGTC-AAAACGATTGGAAG-AATGCTTTTTTTA
324 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTG
** * *** * *
218699 CGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATGTCGA
389 CGACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGA
* *
218764 AAAGAGTGGAGACTGTTACGAGA
454 AAAGAGTGGAGATTGTTATGAGA
* * * *
218787 ATTAGTGCTTGCCTTATTTAAGGAATTAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * * * * *
218852 TCCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGAAGAATACGCTTATAGTCCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
** * * * *
218917 TCACAAAATGAATGAAGACCATTACTAGAATCCATGTTCGTCACCA-TTGAGGCACGAACTTACA
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCA-CATTTGAGGCACGAACATAGA
* * * * * *
218981 CTTTACCAAAATTAGTGGGAAAAAATCCTTTCTTACGAAACGAAACCATCAATATCTTGTATCCA
195 CTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCT
* ** *
219046 TATGAGAAAACTAAGTTTATGGTGCCTAATCTGAAAAAGAATGAGGATTAT-TGTGACTACTCAT
260 TATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATT-TGTGTGACTATTCAT
* * * * *
219110 GTTTCTCTTATTTAAGAGACAAACGTTGATTATATCAAAAACGGTTGGAAGAAATGTTTTTCTTG
324 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTG
* * * * * *
219175 -GAACATTAAAGCATCAATGTTGTGTATCCTAATGAAAAGAATGTGTTTTTTGTTCCCAATCTCG
389 CG-ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
219239 AAAAGAGTGGAGATTGTTATGAGA
453 AAAAGAGTGGAGATTGTTATGAGA
* * * *
219263 ATCAATGCTTGCCTTACTTAAGGAATTAAATTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * * *
219328 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATACGCTTATAATGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
** * * * * *
219393 TCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTACAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* *
219458 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCATGTATGCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * *
219523 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAACAGAATAAGGATTTCTGTGACTATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* *
219588 TTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * *
219653 ACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCTCAATCTCGAAC
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
219718 AGAGTGGAGAGTGTTATGAGA
456 AGAGTGGAGATTGTTATGAGA
* *
219739 ATCAATGCTTGCCTTATTTAAGGAATGGACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
219804 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATATTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * ** *
219869 CCACAATGTGAATGAAGATCATTACTACAATCCATGTTTGTCACATTTGAGGCGTGAACTTAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * * ** * * *
219934 TTTACCAATATTGGGGGGAAGAAAGCCTTTCTTAAGAAACCGCAGCTTCAATATCGTGTGTCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * * * *
219999 ATAAGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTGTGACAATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * * *
220064 TTGTCTTTTTTTAGAGACAAACTTTGATTTTGTCAAAAACGGTTGAAAGAAATGCTTTTCTTGCA
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
* * * *
220129 ACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATGCGTTTTTGGTTCTCAATCTCGAAC
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
*
220194 AGAGTGGAGAGTGTTATGAGA
456 AGAGTGGAGATTGTTATGAGA
*
220215 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
*
220280 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATATTGCCTAA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
* * * ** *
220345 CCACAATGTGAATGAAGATCATTACTACAATCCATGTTTGTTACATTTGAGGCGTGAACTTAGAC
131 TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
* * * ** * * *
220410 TTTACCAATATTGGGGGGAAGAAAGCCTTTCTTAAGAAACCGCAGCTTCAATATCGTGTGTCCTT
196 TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
* * * * *
220475 ATAAGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTGTGACAATTCATGT
261 ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
* * * * * *
220540 TTGTCTTTTTTTAGAGACAAACTTTGATTTTGTCAAAAACGGTTGAAAGAAATGCTTTTTTTACG
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
** *** * * * * *
220605 ACACCAAAGCGTCAATGTCATATATCCTAATGAAAGGAAT-TATTTTTGGTTCCCAGTGTTGAAA
391 ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
***
220669 AGAGTGGAGATTGTTGCAAGA
456 AGAGTGGAGATTGTTATGAGA
*
220690 ATCAATGCTTGCCTTATTTAAGGGATGAA-TTTGA-TTTAAGGAAAATAGGGCAAAGAAAAGATT
1 ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * ** *
220753 TCCGTGCAAAAGAAAATCATCAATATCATTTATCCTAA-CAGGAAGACTTTGTTTATAGTGCCTA
66 TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGG-AGAATAAGTTTATACTGCCTA
** * * * * * *
220817 ATCACAACATAAATGAAGATCATTACTACAAT-CATGTTTGCCAAAATTGAGGCACGAACTTAGA
130 ATCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGA
* * * *
220881 CTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACGATCAATATCATATATGCT
195 CTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCT
* *
220946 TATGAGAAGACTAAGTTTATAGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCAAG
260 TATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATG
*
221011 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTGC
325 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGC
* * *
221076 GACA-TAAA----AAATGTCGCGTATCTTGTTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAA
390 GACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAA
* *
221136 AAGAGTGGGGACTGTTATGAGA
455 AAGAGTGGAGATTGTTATGAGA
221158 ATCAATGCTT
1 ATCAATGCTT
221168 ATGAGAAGAC
Statistics
Matches: 10198, Mismatches: 1081, Indels: 184
0.89 0.09 0.02
Matches are distributed among these distances:
465 4 0.00
466 131 0.01
467 650 0.06
468 307 0.03
469 904 0.09
470 124 0.01
471 56 0.01
472 679 0.07
473 771 0.08
474 702 0.07
475 2838 0.28
476 3025 0.30
477 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
ATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
TCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGAGGAGAATAAGTTTATACTGCCTAA
TCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC
TTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATCCTT
ATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCATGT
TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCG
ACATTAAAGCGTCAATGTCGCGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTCGAAA
AGAGTGGAGATTGTTATGAGA
Found at i:218140 original size:158 final size:158
Alignment explanation
Indices: 217978--218619 Score: 403
Period size: 158 Copynumber: 4.1 Consensus size: 158
217968 TCATAAAGTA
217978 AATGAAGATCATTACT-ACAATCCATGTTTGCCACAATTGAGGCATGAACTTAGACTTTACCAAA
1 AATGAAGATCATTA-TGACAATCCATGTTTGCCACAATTGAGGCATGAACTTAGACTTTACCAAA
* *
218042 ATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAACGATCAATATCGTGTATCCTTATGAGAAGA
65 ATTGGTGGAAAGAAAGCCTTTCTTACAAAACCAAACGATCAATATCGTGTATCCTTATGAGAAGA
218107 ATAAGTTTATGGTGCCTAATCTAGAAAAG
130 ATAAGTTTATGGTGCCTAATCTAGAAAAG
* * * * * * * * ** * * * *
218136 AATGAGGATTAGTATGGCTATTCATGTTCGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCA
1 AATGAAGATCATTATGACAATCCATGTTTGCCACAATT--GAGGCATGAACTTAGACTT-TACCA
** * * * * * ** * *
218198 AAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAA-GCATCAATGTCGCGTATCC-TATTGA
63 AAATTGGTGGAAAGAAA-GCCTTTCTTACAAAACCAAACG-ATCAATATCGTGTATCCTTA-TGA
* ** * * *
218261 AAAGAATGTGTTTTTGGCT-CCTAATCTTGAAAAA
125 GAAGAATAAGTTTATGG-TGCCTAATCTAGAAAAG
* ** ** * * ** * * * * * **
218295 AATGGAGATTGTTATGTGAAT-CAGTGCTTGACTTATTTAAGGAATGAACTTTGATTTTAAGAAA
1 AATGAAGATCATTATGACAATCCA-TGTTTGCCACAATTGAGGCATGAACTTAGACTTT-ACCAA
* * * * ** * * * *
218359 AATAGG-GCAAAGAAAAG-ATTTC-CACACAAAAGAAATC-ATCAATATCATATATCCTAATGGG
64 AATTGGTGGAAAG-AAAGCCTTTCTTACA-AAACCAAA-CGATCAATATCGTGTATCCTTATGAG
* * * * *
218420 AAGAATACGCTTGTCGTGCCTAATC-ACAAAATG
126 AAGAATAAGTTTATGGTGCCTAATCTAGAAAA-G
* *
218453 AATGAAGATCATTACT-ACAATCCATTTTTGCCACAATTGAGGCACGAACTTAGACTTTACCAAA
1 AATGAAGATCATTA-TGACAATCCATGTTTGCCACAATTGAGGCATGAACTTAGACTTTACCAAA
* * * *
218517 ATTGGTGGGAAGAAAGCCTTTCTTACGAAGCCAAACGATCAATATCGTGTATCCTCATGAGAAGA
65 ATTGGTGGAAAGAAAGCCTTTCTTACAAAACCAAACGATCAATATCGTGTATCCTTATGAGAAGA
* *
218582 CTAAGTTTATGGTGCCTAATCCAGAAAAG
130 ATAAGTTTATGGTGCCTAATCTAGAAAAG
218611 AATGAAGAT
1 AATGAAGAT
218620 TAGTGTGACT
Statistics
Matches: 348, Mismatches: 109, Indels: 54
0.68 0.21 0.11
Matches are distributed among these distances:
157 25 0.07
158 196 0.56
159 109 0.31
160 18 0.05
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (158 bp):
AATGAAGATCATTATGACAATCCATGTTTGCCACAATTGAGGCATGAACTTAGACTTTACCAAAA
TTGGTGGAAAGAAAGCCTTTCTTACAAAACCAAACGATCAATATCGTGTATCCTTATGAGAAGAA
TAAGTTTATGGTGCCTAATCTAGAAAAG
Found at i:223036 original size:476 final size:476
Alignment explanation
Indices: 221165--237315 Score: 21772
Period size: 476 Copynumber: 34.0 Consensus size: 476
221155 AGAATCAATG
* * *
221165 CTTATGAGAAGACTAAGTTTATGGCGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * *
221230 TGTTTGTTTTATTTAAGAGAC-AGCTTTGATTCTATCAAAACCGGTTGGAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * *
221294 GCAACATCAAAGCGTCAATGTCGCAG-ATCCTAATGAAAGGAATCTGTTTTTCGTTCCCAATATC
131 GCGACATTAAAGCGTCAATGTCGC-GTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* *
221358 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAACGAA-AAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* *
221422 AGGAAAATAGGGCAAAGAAAAGTTTTCCAAGCAAAAG-AAA--AT-C--ATC---TATCCTAA-G
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * * *
221477 TAGGAGAATAAGTTTATACTGCCTAATCACAACGTGACTGAAGATCATTACCAGAATCCATGTTT
325 -AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
221542 GGCGCATTTGAGGCACGAACATAGGCTTTACCAAGATTGGTTGGAAGAAAG-CGTTCTTACGAAA
389 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
*
221606 CCAAACCATGAATATCGTGTATC
454 CCAAACCATCAATATCGTGTATC
* * *
221629 CTTATGAGAGGACTAAGTTTATGGTGCCTAATCCAATAAAGAATGAGGATTTGTGTGACTACTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * *
221694 TGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAACCGGTTGGAAGAAATGCTTTTGTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * *
221759 GCGACATCAAAGCGTCAATGTCGCGGATCCTAATAAAAGGAATGTGTTTTTTGTTCCCAATATCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
** * * *
221824 AAAAGAGTGGAGACTGTTACAAGAATCAATACTTGCCTTATTCAAGGAATTAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* * *
221889 GGAAAATAGGGCAACGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGG
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * *
221954 GGCGAATAAGTTTAT-GCTGCCTAATCACAACGTGAATGAAGATCATTACTAGAACCCATGTTTG
326 GGAGAATAAGTTTATAG-TGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * *
222018 GCAGATTTGAGGCGCAAACATAGACTTTACCAAAATTGGTGGGAAGGAAG-CTTTCTTAAGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
222082 CAAACCATCAATATCATGTATC
455 CAAACCATCAATATCGTGTATC
* *
222104 CTTATGGGAAGACTAGGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * * *
222169 TATTTGTCTTATTTAAGAGATAAACTTTGATTTTATCAAAAACAGTTGAGAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * *
222234 GCGACATTAAAGCGTCAAT-TCACGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * * * *
222298 AAAATATTGGAGATTGTTATGAGAATCAAAGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAC
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* * * *
222363 GGAAAATAAGGCAAAGAAAAGACTTCCATGCAAAAGAAAATCATCTATATCATTTATCCTAAGGA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * *
222428 GGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGATGATCATTACTAGAATCCATGTTATG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTT-TG
* * *
222493 GCGCATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAG-CGTTCTTACGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
222557 CAAACCATCAATATCGTGTATC
455 CAAACCATCAATATCGTGTATC
*
222579 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGAGGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
*
222644 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * *
222709 GCGACATTAAAGTGTCAATGTCACTTATCCTATTGAAAGGAATGCGTTTTTGGTTCCCAATCTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * * * *
222774 AAAAAAGTGGAGATTGTTATGTGAATCAATGCTTGCCATATTTAGGGAATGAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* *
222839 GGAAAACAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * * * * *
222904 GAAAAATACGTTTATAGTGCCTAATCATAAATTGAATGAAGA-CTGTTACTAGAATCCATGTTTG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC-ATTACTAGAATCCATGTTTG
* * * ** *
222968 TCACAATTGAGGCATGAACTTAGACTTTACTGAAATTGGTGGGAAGAAAGCCGTTCTTACGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* *
223033 CAAACCATCAATATCGTCTGTC
455 CAAACCATCAATATCGTGTATC
* * * **
223055 TTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAAGATTAGTGTGACTACACA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
*
223120 TGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * * *
223185 GTGACATCAAAGTGTCAATGTCGCATATCCTAATGAAAGGAATGTGTTTTTCGTTCCTAATCTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
*
223250 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTT-AGGTAATAAACTTTGATTTTA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG-AATGAACTTTGATTTTA
* *
223314 AGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * * * *
223379 AGGAGAAGAAGTTCATATTGCCTAATCACAACGTGAATGAAAATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * *
223444 GCACTTTTGAGGCACGAACATAGACTTTACCAAAGTTGGTGGCAAGAAAGCATTTTTTACAAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
223509 GAAACCATCAATATCGTGTATC
455 CAAACCATCAATATCGTGTATC
*
223531 CTTATGAGAAAACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
** * *
223596 CATTTGTTTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * * * *
223661 GCGACATTAAAGCATCAATGTCGCATATCCTATTGTAAGGAATGTATTTTTGGTTTCGAATC-CT
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTC-
* * *
223725 GAAAAGAGTGGAGATTGTTATGGGAATCAATGCTTACCTTATTTAAGGAATGAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * *
223790 AGGAAAATAGGGCAAAGAAAAGATTTCCATGGAAAAGAAAATCATCAATATCATTTAACCTAATG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * *
223855 AGAAAAATACGTTTATAGTGCCTAATCACACAA-TGAATGAAGA-CAATTACTAGAATCCATGTT
325 AGGAGAATAAGTTTATAGTGCCTAATCACA-AAGTGAATGAAGATC-ATTACTAGAATCCATGTT
* * * *
223918 TATCACAATTGAGGCACGAACTTAGACTTTACCGAAATTGGTGGGAAGAAAG-CTTTCTTACGAA
388 TGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
*
223982 ACCAAACCATCAATATCGTGTATG
453 ACCAAACCATCAATATCGTGTATC
* * *
224006 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAATAGAATGAGGATTAGTGTGACTACTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * *
224071 TGTTTTTCTTATTTAAG-GACAAACTTTGATTCTATCAAAATCGATTGGAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * ** *
224135 GCAACATCAAAGCGTCAATGTCGTGGATCCTAATGAAAGGAATGTGTTTTTCATTCCGAA-CATC
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATC-TC
** *
224199 GAAAAGAGTGGAGACTGTTACAAGAATCAACGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * *
224264 AGGAAAATGGGGCAAAGAAAAGATTTCCATGCAAAGGAAAATCATCCATATCATTTATCCTAAGG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * * * *
224329 AGGAGAATAAGTTTATACTACCTAATCACAACGTGACTGAAGATCATTACCAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * *
224394 GCGCATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAG-CGTTCTTACGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
224458 CAAACCATCAATATCGTGTATG
455 CAAACCATCAATATCGTGTATC
224480 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * *
224545 TGTTTATTTTATTTAAGAGACAAACCTTGATTCTATCAAAAACGGATGGAAA-AAATGCTTTTCT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TTGAAAGAAATGCTTTTCT
* * * * ** *
224609 TGCGACATCAAAGCGTCAACGTCACGGATCCTAATGAAAGGAATGTGTTTTTCATTCCCAATATC
130 TGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTC
** * *
224674 GAAAAGAGTGGAGACTGTTACAAGAATCAAAGCTTGCCTTATTTAAGGAATGAACTTTGATTTAA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * *
224739 AGGAAAATAGGGCCAAGAAAAGATTTTCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * * *
224804 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGACTGTAGATCATTACCT-GAATCCATGTTT
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTA-CTAGAATCCATGTTT
* * *
224868 GGCGCATTTGAGATGCA--AACATAGACTTTACCAAAATTGGTGGGAAGAAAG-CATTCTTACGA
389 GTCACATTTGAG--GCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGA
* *
224930 AACCAAACCATCAATATCATGTATG
452 AACCAAACCATCAATATCGTGTATC
*
224955 CTTGTGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * * *
225020 TGTTTGTTTTTTTTAAGAGACCAACTTTGATTCTATCAAAAATGGTTGGAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * * ** * * * *
225085 GCGACATCAAAGCATCAACGTCGTGGATTTTAATGAAATGAATGTGTTTTTTGTTCCCAATATCA
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
**
225150 AAAAGAGTGGAGACTGTTACAAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
*
225215 GGAAAATAGGGCAAATAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAT-A
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * * * *
225279 TGAGAATAAGTTTATACTGCCTAATCACAACGTGACTGAAGATCATTACCAGAATCCATGTTTGG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTT-G
* * * *
225344 T-GCATTTGAGGCACGAACATAGGCTTTACCAAGATTGGTGGGAAGAAAG-CGTTCTTACGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* *
225407 CAAACCATGAATATCGTGTATG
455 CAAACCATCAATATCGTGTATC
*
225429 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGTCTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * *
225494 TGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTTGAAAGAAACGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * *
225559 GCGACATTAAAGCGTCAATGTCGCATATCCTATTGAAAGAAATATGTTTTTGGTTCCCAATCTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * * *
225624 AAAAGAGTGGAGATTGTTATGAGAATAAATGCTTGCCTTATTCAAGGAATGAACTTTGATCTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* ** *
225689 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAATGAAAATCATTAATATCATTTAACCTAATGA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * * * * *
225754 GAAAAATACGTTTATAGTGCCTAATTACAAA-CGAATGAAGACCATTTACTAGAATCCATGTTTG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCA-TTACTAGAATCCATGTTTG
* * * * *
225818 TCACAATTGAGGAATGAACTTAGACTTTACCAAAATTGGTGGGAACAAAG--TGTTCTTACGAAA
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCT-TTCTTACGAAA
225881 CCAAACCATCAATATCGTGTATGC
454 CCAAACCATCAATATCGTGTAT-C
*
225905 C-TATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTAATCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * * *
225969 TGTTTGTCTTATTTAAGAGACAAACCTTGATTCTATCAAAAACGGTTGGAAGAAAAGCCTTTCAT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
** * * *
226034 GAAACATTAAAGCATCAATGTCGCGTATCCTAATGAAAGAAATGTCTTTTTGGTTCCCAATCTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * *
226099 AAAAGAGTGGAGACTGTTACGAGAATCAATGCCTACCTTATTTAAGGAATGAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* * *
226164 GGAAAATAGGGCAAAGAAAAGATTTCCGTGCCAAAGAAAATCATCCATATCATTTATCTTAAT-A
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* *
226228 AGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGATGATCATTACTAGAATCCATGTTTGT
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * *
226293 CACATTTGAGGCACGAACGTAAACTTTACCAAAATTGGCGGGAAGAAAGCATTTCTTACAAAACC
391 CACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
* *
226358 AAACGATCAATATCATGTATC
456 AAACCATCAATATCGTGTATC
* * *
226379 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCAAAAAAAAGAATGAGGATTAGTGTGACTACTC
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATC-CAAAAAAGAATGAGGATTTGTGTGACTATTC
* *
226444 ATGTTAGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
65 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * * * *
226509 TACGGCATTAAAGCATCAATGTCGCGTATCCTATTCAAAGAAATATGTTTTTGGTTCCCAATCTC
130 TGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * *
226574 GAGAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTCAAGGAATGAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * **
226639 AGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTACCCTACGG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* *
226704 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * *
226769 GCACATTTGAGGCACGGACATAGACTTTACCAAAATTGGTTGGAAGAAAG-CTTTCTTACGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
226833 CAAACCATCAATATCGTGTATG
455 CAAACCATCAATATCGTGTATC
* *
226855 CTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTAA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
*
226920 TGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * *
226985 GCAATATTAAAGCATCAATGTCGCGTATCCTGATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
*
227050 AAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* * *
227115 GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCCATATCATTTATCCAAATAA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * * * * *
227180 GGAGACTTTA-TTTATAGTGCCTTATCACAAAGTAAATGAAGATCGTTACTACAATCCATGTTTG
326 GGAGA-ATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* ** * * *
227244 CCACAAATGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAATAAAGCCTTTCTTATGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
227309 CAAA-CATCAATATCGTGTATC
455 CAAACCATCAATATCGTGTATC
*
227330 CTTATGAGAAGAGTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * * *
227395 TGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAAAGCCTTTCAT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* **
227460 GCGACATTAAAGCATCAATGTCGCGTATCCTAACAAAAGGAATGTGTTTGTTGGTTCCCAATCTC
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTT-TTGGTTCCCAATCTC
* * *
227525 GAAAAGAGTGGAGACTGTTACGAGAATCAATGCTAGCATTATTTAAGGAATGAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * *
227590 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAGTCAACTATATCATTTATCCTAAT-
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * *
227654 AAGAGAATAAGTTTATAGTGCCTAATCACATAGTGAATGATGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* ** * * * * *
227719 TCACATTCGAGGCACGAATGTAGACTTTA-C--AATCGGAGGGAAGAAAGCATTTATTACAAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
**
227781 CAAATGATCAATATCGTGTATCC
455 CAAACCATCAATATCGTGTAT-C
227804 TTATGAGAAGACTAATTTTATGGTGTATGCTTTTGGGAAGACTAAGTTTATGGTGCCTAATCCAA
1 -----------C-----TTA---TG-A---------GAAGACTAAGTTTATGGTGCCTAATCCAA
* *
227869 AAAAGAATGAGGATTTGTGTGACTATTAACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
37 AAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
227934 CAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCATCAATGTCGTGTATCCTGATGA
102 CAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGA
* * *
227999 AAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTAGAGATTGTTATGAGAATCAATGCTTAC
167 AAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGC
* * *
228064 CTTATTTATGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCGTGCTAAAG
232 CTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
228129 AAAATCATCCATATCATTTATCCTAAT-AAGAGAATAAGTTTATACTGCCTAATCGCAAAGTGAA
297 AAAATCATCCATATCATTTATCCTAATGAGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAA
* * * * * *
228193 TGATGATCATCACTAGAATCCATGTTTGTCACATTTAAGGCATGAACGTAGACTTTACCAAAACT
362 TGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATT
* * * * ** *
228258 GGCGGGAAGAAAGCATTTCTTACAAAACTAAACGGTCAATATCATGTATC
427 GGTGGGAAGAAAGCCTTTCTTACGAAACCAAACCATCAATATCGTGTATC
* * * *
228308 CTTATGAGAAGACTAAGTTTATGGTTCCTAATCCAAAAAAAGAATGAAGATTAGTGT--C-ACTC
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCC-AAAAAAGAATGAGGATTTGTGTGACTATTC
* *
228370 ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGGTTGAAAGAAATGCTTTTCT
65 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * * *
228435 TCCGACATTAAAGCATTAATGTCACGTATCCTATTGAAAGGAATGTGTTTTTGGTCCCCAATCTC
130 TGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTC
* * * ** *
228500 GAGAATAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTTGGGAATAAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* *
228565 AGGAATATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * * *
228630 AGGAGAAGAAGTTCATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * *
228695 GCACATTTGAGGCACGAACATAGACTTTACCAAAGTTGGTGGCAAGAAAGCTTTTTTTATGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
228760 CAAACCATCAATATCGTGTATC
455 CAAACCATCAATATCGTGTATC
228782 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
*
228847 TGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * * ** * *
228912 GCGACATTAAAGCATCAATGCCTCATATCCTATTTTAAGGAATGTGTTTTTGGTTTCGAATCTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * * *
228977 AAAAGAGTGGAGATTGTTATGAGAATCAATGTTTACCTTATTTAAGGAATAAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* *
229042 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAACCTAATGA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * * * **
229107 GAAAAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGA-CAATTACCGGAATCCATGTTTG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATC-ATTACTAGAATCCATGTTTG
* * * *
229171 TCACAATTGAGGCATGAAC-TGAGACTTTATCAAAATTAGTGGGAAGAAAG-CTTTCTTACGAAA
390 TCACATTTGAGGCACGAACAT-AGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
* *
229234 CCAAACAATCAATATCATGTATC
454 CCAAACCATCAATATCGTGTATC
* * * *
229257 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCAAAATAGAATGAGGATTAGTGTGACTACTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * *
229322 TGTTTGTCTTATTAAAGGGACAAACTTTGATTCTATCAAAATCGGTTGGAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* ** * ** *
229387 GCGACATCAAAGCGTCAATGTCATGTATCCTAATGAAATGAATGTGTTTTTCATTCCCAATCTCA
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * *
229452 AAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGTATTAA-TCTTGATTTTA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACT-TTGATTTTA
* * * *
229516 AGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCTTAATA
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * *
229581 AGGAGAATATGTTCATAGTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * *
229646 TTACATTTGAGACATGAACATAGACTTTACCAAATTTGGTGGGAAGAAAGCCTTTTTTTATGAAA
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCC-TTTCTTACGAAA
* * * *
229711 CAAAAGCATCCATATTGTGTATC
454 CCAAACCATCAATATCGTGTATC
* ** * * *
229734 CTTATGAGAAGACTAAGTTTATTGTGCCTAATCTTACAAA-AATGAGGATTAGTATGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* *
229798 TGTTTGTCTTATTTAAGATACAAACTTTGATTCTATTAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* *** * *
229863 GCAACCCCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCAT-
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATC-TC
* *** * *
229927 GAAAAGAATGGAGACTGTTGCAAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * *
229992 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAACATCTTCCATGTCATTTATCCTAATG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
*** * * * *
230057 AGGAGAATGTTTTTATAGTGACTAATCACAAAATTAATGAAGATC-TATACTAGAACCCATGTTT
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCAT-TACTAGAATCCATGTTT
* * * ** * *
230121 GTCGCATTTGAGGCACCAACTTAGACTTTATGAAAATTGGTGGCAAGAAAGCCTTTCTTATGAAA
389 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
* * *
230186 CCAATA-CTTCAGTATGGTGTATC
454 CCAA-ACCATCAATATCGTGTATC
* ** * * * * *
230209 CTTATTAGAAGACTTGGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * *
230274 TGTTTGTCTTATTTAAGAGACAAACTTTGATGCTGTCAAAAAAGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
*** * *
230339 GCGACCCCAAAGCGTCAATGTCGTGCATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCAT-
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATC-TC
* * * *
230403 GAAAAGAATGGAGACTGTTTTGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * * * *
230468 AGAAAAATAAGGAAAAAAAAAGATTTCCATGTAAAAGAAAATCATCCATATCATTTATCCTAACG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* *
230533 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGATTGAAGATCAATACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * *
230598 CCACAATTGAGCCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* * *
230663 CAAAGCATCAATATCATGCATC
455 CAAACCATCAATATCGTGTATC
* * * * * * *
230685 CTTATGAGAAGAATAAGTTTATGGTGCGTAATCCTAAAAA-AATAAGGATTAGTATGACTATTTA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * * * *
230749 TGTTTGCCTTTTTTAAGAGACAAACTTTAATTCTATAAAAAATGGTTGAAAAAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* ** * * * * * *
230814 GCAACACAAAAGCATCGAA-GTCACATATACTAATGAAAGGAATTTGTTTTTAGTTCCCAATCTC
131 GCGACATTAAAGCGTC-AATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTC
** *
230878 GAAAATG-GTGGAGACTGTTACAAGAATCAATGCTTACCTTATTTAAGGAAT-AACTTTGATTTT
195 GAAAA-GAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTT
* ** * ** * * *
230941 AAGGAACATA-CACAAAGAAACGATTTTGATGCAAAAGAAAATCATTCATACCATTTATACTAAT
259 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAT
*** * *
231005 GAGGAGAATGTTTTTATAGTGACTAATCACAAAATGAATGGAA-ATC-TATACTAGAATCCATGT
324 GAGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAAT-GAAGATCAT-TACTAGAATCCATGT
* * * *
231068 TTGTCACAATTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAGAAAGCCTTTCTTGCGA
387 TTGTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGA
* * *
231132 AGCCAAAGCATCAATATCATGTATC
452 AACCAAACCATCAATATCGTGTATC
* * * * * *
231157 CTTATGAGAAGACTAAGTTTCTGGTGCCTAATGCTAAAAA-AATAAGGATTAGTATGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
** * **
231221 TGTTAATCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTTGGGAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* ** * *** * *
231286 GTGACACCAAAGCGCCAATGTCATATATCCCAAT-AGAAGGAATGTGTTTTTGGTTCCCAATCTT
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTC
* * *
231350 GAAAAGAGTGGAGACTGTTATGAGAATCAAAGCTTG-CTTATTTAAGGAATTAAATTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * *
231414 AGGAAAATAAGGCAAAGAAAAGATTTCCGTGCAAAAGAAAATCATCAATATCATTTATTCTAATG
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * * * *
231479 AGAAGAATACGTTTATAGCGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * *
231544 TCAC-TATTGCGGTACGAAC-TCAGACTTTACCAAATTTAGTGGGAA-AATGCCTTTCCTACGAA
390 TCACAT-TTGAGGCACGAACAT-AGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAA
* *
231606 ACCAAATCATCAATATCGTGTATG
453 ACCAAACCATCAATATCGTGTATC
* * *
231630 CTTTTGAGAAGACTAAGTTTAGGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCT
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * * * * *
231695 TGCTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACAGTTGGAAGAAAAGCCTTTCAT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * ** * *
231760 ACGCCATTAAAGTATCAGTGTCGCATATCCTAATGAAAGGAATGTGTTTTTTGGTTCCCAATCTC
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCTC
* * *
231825 GAAAAGAATGGAGACTGTCATGAGAATCAATGCTAGCCTTATTTAAGGAATGAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
** *
231890 AGGAAAATAGGATAAAGAAAAGATTTCCATGCAGAAGAAAATCATCCATATCATTTATCCTAAT-
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * *
231954 AAGAGAATAAGTTTAGAGTGCCTAATCACAAAGTGAATGATGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* ** * *
232019 TCACATTTGAGGCACGAACGTAGACTTTACCAAAATTGGCAGGAAGAAAGCATTTCTTACAAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* *
232084 CAAACGATCAATATCATGTATC
455 CAAACCATCAATATCGTGTATC
* *
232106 CTTAT--G-AGA--AAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * *
232166 TGTTTGTCTTATTTACGAGACAAACTTTGATTCCATTAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * * *
232231 GCGACATTAAAGCTTCAATGTCGCGTATCCTATTGAATGGAATGGGTTTTTGGTTCCTAATCTTG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * ** *
232296 AAAAGAGTGGAGATTGTTATGAGAATCAACGCTTGCCTTATTTTGGGAATAAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* * *
232361 GGAATACAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATTATTTATCCTAA-GA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG-
* ** * * *
232425 AGGAGAAGAAGTCCATACTGCCCAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * *
232490 GCACATTTGAGGCACGAACATAGACTTTTCCAAAGTTGGTGGAAAGAAAGCTTTTTTTACGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
232555 CAAACCATCAATATCGTGTATC
455 CAAACCATCAATATCGTGTATC
* *
232577 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGGCTATTCT
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
232642 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * * *
232707 GCAACATTAAAGCATCAATGTTGCGTATCCTGATGAAAGGAATGTGTTTTTGGTTCCAAATGTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * * * *
232772 AAAAGAGTGGAGATTGTTATGAGAATCATTGCTTGCCTTATTTAAGGAATGAAGTTTGTTTTTCA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* *
232837 GGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCGTAAT-A
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * *
232901 AGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGATGATCATTACTAGAATCCATGTTTGT
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGT
*
232966 CACATCTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAG-CTTTCTTACGAAACC
391 CACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
*
233030 AAACCATCAATATCGTGTATG
456 AAACCATCAATATCGTGTATC
* * *
233051 CTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGATGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* *
233116 TGTTTGTCTTATTTAAAAGACAAACTTTGATTATATCAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * *
233181 GTGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTCTAGTTCCCAAACAT-
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATC-TC
* * *
233245 GAAAAGAGTAGAGATTGTTATAAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * *
233310 AGGAAAGTAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCCATATCATTCATCCTAA-A
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* ** *
233374 AAGAGAATAAGTTTATTCTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* *
233439 GCACATTTGAGGCACGAACATAGACTTTACCAAAACTGGTGGGAAGAAAG-CTTTCTTACGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
** *
233503 CAAACCATCAATATCGTGCGTG
455 CAAACCATCAATATCGTGTATC
* * * * * *
233525 CTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAAGATTAGTGTAACTACTAA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* *
233590 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGGAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * ** * *
233655 GCGACATCAAAGCGTCAGTGTCGCATATCCTAATGAAAGGATTGTGTTTTTCATTCCCAAGCTCA
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * * *
233720 AAAAGAGTGGAGACTGTTACGAGAATCAACGCTTGCCTTATTTATGGATTGAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* * **
233785 GGAAAATAAGGCAAAGAAAGGATTTCCACACAAAAGAAAATCATCCATATCATTTATCCTAA-GA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG-
* * *
233849 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGATGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * *
233914 GCACTTTTGAGGCACGAACATAGACTTTACCAAAGTTGGTGGAAAGAAAGCATTTTTTACAAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
233979 CAAACCATCAATATCGTGTATC
455 CAAACCATCAATATCGTGTATC
* * *
234001 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACAACTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * * * * *
234066 AGTCTGCCTTATTTCAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAATAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * * *
234131 GCGACATTAGAGTGTCAATGTCGTGTATCCTATTAAAAGGAATGTGTTTTTTGTTCCCAATCTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
*** *
234196 AAAAGAGTGGAGACTGTTGCAAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTAGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* * *
234261 GGAAAATAGGGCAAAGAAAAGATGTCCATGCAAAAGAAAATCACCCATATCATTTATCCTAAGGA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
*** * *
234326 GGAGAATAAGTTTATACCACCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTGG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGT
* * *
234391 CACATTTGAGGCATGAACATAGGCTTTACCAAAATTGGTGGGAAGAGAG---TTCTTACGAAACC
391 CACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
*
234453 AAACCATCAATATCGTGTATG
456 AAACCATCAATATCGTGTATC
* *
234474 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAGAAGAATGAGAATTTGTGTGACTACTT-
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTA-TTC
*
234538 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATTGAAAGAAATGCTTTTCT
65 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCT
* * * * *
234603 TGCAACATTAAAGCGTCAATGTCGCGTATCCTATTAAAAGGAATGTGTTTTTTGTTCCTAATCTC
130 TGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTC
*
234668 GAAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * *
234733 AGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGGAAATCATCAATATCATTTATCCTAATA
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* * * * * * * * * **
234798 AGGAGACTTTA-TTTGTAGCGCCTTATCACAAAGTAAATGAAAATCATTGCTACAAAGCATGTTT
325 AGGAGA-ATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTT
* * * * *
234862 GCCACAATTGAGGCACGAACTTAGACTTTACTAAAATTGGTGGGAATAAAG-CTTTCTTACGAAA
389 GTCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAA
** *
234926 CCAAACCATCAATATCGTGCGTG
454 CCAAACCATCAATATCGTGTATC
* * * * *
234949 CTTTTGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAAGATTAGTGTGACTACTAA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* *
235014 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTTGGAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * ** * *
235079 GCGACATCAAAGCGTCAGTGTCGCATATCCTAATGAAAGGATTGTGTTTTTCATTCCCAAGCTCA
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* *
235144 AAAAGAGTGGAGACTGTTATGAGAATCAACGTTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
*
235209 GGAAAATAGGGCAAAGAAAAGACTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAT-A
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* ** * *
235273 AGAGAATAAGTTTATTCTGCCTAATCACAATGTGAATGAAGATCATTACTAGAATCCATGTTTGG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGT
*
235338 CACATTTGAGGCACGAACATAGACTTTACCAAAACTGGTGGGAAGAAAG-CTTTCTTACGAAACC
391 CACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
*
235402 AAACCATCAATATCGTGTATG
456 AAACCATCAATATCGTGTATC
* * ** * *
235423 CTTTTGAGAAGACTAAGTTGATGGTGCCTAATTTAAAAGAGTATGAGGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * *
235488 TGTTTGTCTTATTTAAGAGATAAACTTCGATTCTATCAAAAATGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
*
235553 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCCCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * *
235618 AAAAGAGTGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* * * * *
235683 GGAACATAGGGCAAAGAAAAGATTTCCATGCAAAAGAACATCATCCATGTCATTTATTCTAATAA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
*** * * * * *
235748 GGAGAATGTTTTTACAGTGACTAATCACAAAATTAATGAAGATC-TATACTAGAACCCATGTTTG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCAT-TACTAGAATCCATGTTTG
* * * * *
235812 TCACATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTATGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
** * * *
235877 CAATGCTTCAGTATCATGTATC
455 CAAACCATCAATATCGTGTATC
* ** * * * * * *
235899 CTTATTAGAAGACTTGGTTTATGGTCCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
** *
235964 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCCGTCAAAAATGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
*** * ** *
236029 GCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAATGAATGTGTTTTTGGTTCCCAATCAT-
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATC-TC
* *
236093 GAAAAGATTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA
195 GAAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTA
* * * **
236158 AGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGGAAATCATCCATATCATTTAACCTAACA
260 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATG
* *
236223 AGGAGAATAAGTTTATACTGCCTAATCACAACGTGAATGAAGATCATTACTAGAATCCATGTTTG
325 AGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * *
236288 GCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCTTTTTTTACGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
*
236353 CAAACCATCAATATCATGTATC
455 CAAACCATCAATATCGTGTATC
* *
236375 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTGTGACTACTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
*
236440 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * *
236505 GCAACATTAAAGCGTCAATGTCTCGTATCCTATTGAAAGGAATGTGTTTTTTGTTCCCAATCTTG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * ** * *
236570 AAAAGAGTGGAGATTGCTACAAGAATGAATGCTTGCCTTATTTAAGGATTGAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
*
236635 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAGGA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * * * * *
236700 GGAGAATAAGTTTATATTGCCTAATCACAACGTGAATGAAGGTCTTTACTAGAATCCATGTGTGG
326 GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGT
* *
236765 CACTTTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAG-CGTTCTTACGAAACC
391 CACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
*
236829 AAACCATCAATATCGTGTATG
456 AAACCATCAATATCGTGTATC
*
236850 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGATGATTTGTGTGACTATTCA
1 CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
* * *
236915 TGTTTGTTTTATTTAAGAGATAAAGTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
* * * * *
236980 GCGACACTAAAGCATCAATGTCGCGTATCCCACTGTAAGGAATGTGTTTTTGGTTCCCAATCTCG
131 GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
* * * * * *
237045 AAAAGAGTGGAGATTTTTATGAGTATCAGTGCTTACCTTATTTAAGGAATTAACTTTGATTTTAA
196 AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
* *
237110 GGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
261 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
* * * * *
237175 -GAGAAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATTGCTAGAATCTATGTTTG
326 GGAG-AATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * *
237239 TCACAATTGAGGCATGAACTTAGACTTTACCGAAATTGGTGGGAAGAAAGCTTTTTTTATGAAAC
390 TCACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAAC
* *
237304 AAAAGCATCAAT
455 CAAACCATCAAT
237316 GCTTTTGGTT
Statistics
Matches: 13895, Mismatches: 1634, Indels: 304
0.88 0.10 0.02
Matches are distributed among these distances:
464 83 0.01
465 144 0.01
466 47 0.00
467 3 0.00
469 2 0.00
470 131 0.01
471 293 0.02
472 293 0.02
473 1031 0.07
474 2644 0.19
475 4271 0.31
476 4337 0.31
477 177 0.01
484 1 0.00
485 3 0.00
488 3 0.00
490 3 0.00
493 3 0.00
494 1 0.00
502 218 0.02
503 161 0.01
504 1 0.00
505 45 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
CTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATTCA
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTT
GCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCG
AAAAGAGTGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAA
GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA
GGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGT
CACATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACC
AAACCATCAATATCGTGTATC
Found at i:227844 original size:30 final size:30
Alignment explanation
Indices: 227796--227858 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
227786 GATCAATATC
*
227796 GTGTATCCTTATGAGAAGACTAATTTTATG
1 GTGTATCCTTATGAGAAGACTAAGTTTATG
* * *
227826 GTGTATGCTTTTGGGAAGACTAAGTTTATG
1 GTGTATCCTTATGAGAAGACTAAGTTTATG
227856 GTG
1 GTG
227859 CCTAATCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.40
Consensus pattern (30 bp):
GTGTATCCTTATGAGAAGACTAAGTTTATG
Found at i:237551 original size:291 final size:290
Alignment explanation
Indices: 237027--237594 Score: 750
Period size: 291 Copynumber: 2.0 Consensus size: 290
237017 AGGAATGTGT
* * * * * * *
237027 TTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTTTTATGAGTATCAGTGCTTACCTTATTTAAGG
1 TTTTGGTTCCCAATCTC-AAAAGAATGGAGACTGTTACGAGAATCAATGCTTACCTTATTTAAAG
* *
237092 AATTAACTTTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
65 AATGAACATTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* *
237157 TATCATTTATCCTAATGAGAGAAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCATT
130 TATCATTTATCCCAATGAGAGAAATACGTTTATAGTGACTAATCACAAAATGAATGAAGACCATT
* * * ** *
237222 GCTAGAATCTATGTTTGTCACAATTGAGGCATGAACTTAGACTTTACCGAAATTGGTGGGAAGAA
195 ACTAGAACCCATGTTTGTCACAATTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* *
237287 AGCTTTTTTTATGAAACAAAAGCATCAATGC
260 AGCCTTTCTTATGAAACAAAAGCATCAATGC
*
237318 TTTTGGTTCCCAATCAT-AAAGAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAA
1 TTTTGGTTCCCAATC-TCAAA-AGAATGGAGACTGTTACGAGAATCAATGCTTACCTTATTTAAA
* ** * *
237382 -AGATGAACATTGATTTTAAGGGAAA-TTGGGTGAATAAAAGATTTCCATGCAAAAGAACATCAT
64 GA-ATGAACATTGATTTTAA-GGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* *** * *
237445 CCATATCATTTATCCCAATGA-AGAGAATGTTTTTATAGTGACTAATCACAAAATTAATGAAGAT
127 CAATATCATTTATCCCAATGAGAGA-AATACGTTTATAGTGACTAATCACAAAATGAATGAAGAC
*
237509 C-TATACTAGAACCCATGTTTGTCACATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGC
191 CAT-TACTAGAACCCATGTTTGTCACAATTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGC
237573 AAGAAAGCCTTTCTTATGAAAC
255 AAGAAAGCCTTTCTTATGAAAC
237595 CAATGCTTCA
Statistics
Matches: 239, Mismatches: 32, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
290 8 0.03
291 225 0.94
292 6 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (290 bp):
TTTTGGTTCCCAATCTCAAAAGAATGGAGACTGTTACGAGAATCAATGCTTACCTTATTTAAAGA
ATGAACATTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
ATCATTTATCCCAATGAGAGAAATACGTTTATAGTGACTAATCACAAAATGAATGAAGACCATTA
CTAGAACCCATGTTTGTCACAATTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
GCCTTTCTTATGAAACAAAAGCATCAATGC
Found at i:238030 original size:767 final size:766
Alignment explanation
Indices: 236552--238082 Score: 2055
Period size: 767 Copynumber: 2.0 Consensus size: 766
236542 AGGAATGTGT
* * * * * *
236552 TTTTTGTTCCCAATCTTGAAAAGAGTGGAGATTGCTACAAGAATGAATGCTTGCCTTATTTAAGG
1 TTTTGGTTCCCAATCATGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGCCTTATTTAAAG
*
236617 ATTGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA
66 ATTGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA
* * * * ** * *
236682 TATCATTTATCCTAAGGAGGAGAATAAGTTTATATTGCCTAATCACAACGTGAATGAAGGTCTTT
131 TATCATTTATCCCAAGGAAGAGAATAAGTTTATAGTGACTAATCACAAAATGAATGAAGATCTAT
* * * *
236747 ACTAGAATCCATGTGTGGCACTTTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAA
196 ACTAGAACCCATGTGTGGCACATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGCAAGAA
* * *
236812 AGCGTTCTTACGAAACCAAACCATCAATATCGTGTATGCTTATGAGAAGACTAAGTTTATGGTGC
261 AGCGTTCTTACGAAACCAAACCATCAATATAGTGCATCCTTATGAGAAGACTAAGTTTATGGTGC
* * * * * *
236877 CTAATCCAAAAAAGAATGATGATTTGTGTGACTATTCATGTTTGTTTTATTTAAGAGATAAAGTT
326 CTAATCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* *
236942 TGATTCTATCAAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACTAAAGCATCAATGTCGCGTA
391 TGATTCTATCAAAAACGGTTGAAAGAAATGCTTTCCTTGCGACACAAAAGCATCAATGTCGCGTA
* * * * * * * * *
237007 TCCCACTGTAAGGAATGTGTTTTTGGTTCCCAATCTCGAAAAGAGTGGAGATTTTTATGAGTATC
456 TCCCAATGAAAGAAACGTGTTTTTGGTTCCCAAACTCGAAAAGAATGGAGACTGTTATGAGAATC
* * * * * *
237072 AGTGCTTACCTTATTTAAGGAATTAACTTTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTCC
521 AATGCTTACCTTATTTAAGGAATGAACATTGATTTTAAGAAAAATAGGGAAAAGAAAAGATTTCC
*
237137 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAAATACGTTTATAGTGCCTAATCA
586 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAAATAAGTTTATAGTGCCTAATCA
* * * * * *
237202 CAAAATGAATGAAGACCATTGCTAGAATCTATGTTTGTCACAATTGAGGCATGAACTTAGACTTT
651 CAAAATGAATGAAGACCAATACTAGAATCCATGTTTGCCACAATTCAGCCATGAACTTAGACTTT
** * * *
237267 ACCGAAATTGGTGGGAAGAAAGCTTTTTTTATGAAACAAAAGCATCAATGC
716 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACAAAAGCATCAATGC
* *
237318 TTTTGGTTCCCAATCAT-AAAGAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAA
1 TTTTGGTTCCCAATCATGAAA-AGAATGGAGACTGCTACAAGAATCAATGCTTGCCTTATTT-AA
* * ** * *
237382 AGA-TGAACATTGATTTTAAGGGAAATTGGGTGAATAAAAGATTTCCATGCAAAAGAACATCATC
64 AGATTGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* *** *
237446 CATATCATTTATCCCAATGAAGAGAATGTTTTTATAGTGACTAATCACAAAATTAATGAAGATCT
129 CATATCATTTATCCCAAGGAAGAGAATAAGTTTATAGTGACTAATCACAAAATGAATGAAGATCT
* * * *
237511 ATACTAGAACCCATGTTTGTCACATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAG
194 ATACTAGAACCCATGTGTGGCACATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGCAAG
* * ** * * * **
237576 AAAGCCTTTCTTATGAAACCAATGCTTCAGTATAGTGCATCCTTATTAGAAGACTTGGTTTATGG
259 AAAG-CGTTCTTACGAAACCAAACCATCAATATAGTGCATCCTTATGAGAAGACTAAGTTTATGG
* * * *
237641 TGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTGTTCATGTTTGTCTTATTTAAGAGACAAA
323 TGCCTAATCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
237706 CTTTGATTCTGTCAGAAAA-GGTTGAAAGAAATGCTTTCCTTGCGACTCAAAAGCGTCAATGTCG
388 CTTTGATTCTATCA-AAAACGGTTGAAAGAAATGCTTTCCTTGCGACACAAAAGCATCAATGTCG
* *
237770 TGTATCCTAATGAAAGAAACGTGTTTTTGGTTCCCAAACAT-GAAAAGAATGGAGACTGTTATGA
452 CGTATCCCAATGAAAGAAACGTGTTTTTGGTTCCCAAAC-TCGAAAAGAATGGAGACTGTTATGA
* *
237834 GAATCAATGCTTGCCTTATTTAAGGGATGAACATTGATTTTAAGAAAAATAGGGAAAAGAAAAGA
516 GAATCAATGCTTACCTTATTTAAGGAATGAACATTGATTTTAAGAAAAATAGGGAAAAGAAAAGA
* * *
237899 TTTTCATGCAAGAGAAAATCATCCATATCATTTATCCTAATGAG-GAGAATAAGTTTATAGTGCC
581 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGA-AATAAGTTTATAGTGCC
* * *
237963 TAATCACAAAGTGAATGAAGATCAATACTAGAATCCATGTTTGCCATAATTCAGCCATGAACTTA
645 TAATCACAAAATGAATGAAGACCAATACTAGAATCCATGTTTGCCACAATTCAGCCATGAACTTA
* *
238028 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
710 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACAAAAGCATCAAT
238083 ATCATGTATC
Statistics
Matches: 657, Mismatches: 102, Indels: 11
0.85 0.13 0.01
Matches are distributed among these distances:
765 3 0.00
766 219 0.33
767 430 0.65
768 5 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (766 bp):
TTTTGGTTCCCAATCATGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGCCTTATTTAAAG
ATTGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA
TATCATTTATCCCAAGGAAGAGAATAAGTTTATAGTGACTAATCACAAAATGAATGAAGATCTAT
ACTAGAACCCATGTGTGGCACATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGCAAGAA
AGCGTTCTTACGAAACCAAACCATCAATATAGTGCATCCTTATGAGAAGACTAAGTTTATGGTGC
CTAATCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
TGATTCTATCAAAAACGGTTGAAAGAAATGCTTTCCTTGCGACACAAAAGCATCAATGTCGCGTA
TCCCAATGAAAGAAACGTGTTTTTGGTTCCCAAACTCGAAAAGAATGGAGACTGTTATGAGAATC
AATGCTTACCTTATTTAAGGAATGAACATTGATTTTAAGAAAAATAGGGAAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAAATAAGTTTATAGTGCCTAATCA
CAAAATGAATGAAGACCAATACTAGAATCCATGTTTGCCACAATTCAGCCATGAACTTAGACTTT
ACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACAAAAGCATCAATGC
Found at i:238216 original size:476 final size:476
Alignment explanation
Indices: 237318--239529 Score: 2849
Period size: 476 Copynumber: 4.7 Consensus size: 476
237308 GCATCAATGC
*
237318 TTTTGGTTCCCAATCAT-AAAGAGAATGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAA-
1 TTTTGGTTCCCAATCATGAAA-AGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAG
* * * ** * *
237381 AAGATGAACATTGATTTTAAGGGAAATTGGGTGAATAAAAGATTTCCATGCAAAAGAACATCATC
65 GA-ATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * *** * * *
237446 CATATCATTTATCCCAATGAAGAGAATGTTTTTATAGTGACTAATCACAAAATTAATGAAGATCT
129 CATATCATTTATCCTAATGAGGAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * *
237511 ATACTAGAACCCATGTTTGTCACATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAG
194 ATACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG
* * * * * * **
237576 AAAGCCTTTCTTATGAAACCAATGCTTCAGTAT-AGTGCATCCTTATTAGAAGACTTGGTTTATG
259 AAAGCCTTTCTTACGAAACCAAAGCATCAATATCA-TGTATCCTTATGAGAAGACTAAGTTTATG
* * *
237640 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTGTTCATGTTTGTCTTATTTAAGAGACAA
323 GTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
237705 ACTTTGATTCTGTCAGAAAA-GGTTGAAAGAAATGCTTTCCTTGCGACTCAAAAGCGTCAATGTC
388 ACTTTGATTCTATC-GAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTC
* * * *
237769 GTGTATCCTAATGAAAGAAACGTGT
452 ATATATCCTAATGAAAGGAATGTGT
* * *
237794 TTTTGGTTCCCAAACATGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGG
1 TTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGG
* * * * *
237859 GATGAACATTGATTTTAAGAAAAATAGGGAAAAGAAAAGATTTTCATGCAAGAGAAAATCATCCA
66 AATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA
*
237924 TATCATTTATCCTAATGAGGAGAATAAGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCAAT
131 TATCATTTATCCTAATGAGGAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAAT
* * * *
237989 ACTAGAATCCATGTTTGCCATAATTCAGCCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
196 ACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * * * **
238054 AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTTCTGAGAAGAATAAGTTGGTGGTG
261 AGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTG
* * *
238119 CGTAATCCTAAAAAGAATGAGGATTAGTATCACTATTCATGTTTGTCTTTTTTAAGAGACAAACT
326 CCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
238184 TTGATTCTATCGAAAATGGTTGAAAAAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATAT
391 TTGATTCTATCGAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATAT
*
238249 ATACTAATGAAAGGAATGTGT
456 ATCCTAATGAAAGGAATGTGT
* * * * * * *
238270 TTTTAGTTCCCAATCTTGAAAAGGGTGGAGACTGTTACAAGAATAAATGCCTACCTTATTTAAGG
1 TTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGG
* ** * *
238335 AAT-AACTTTGATTTTAAGGAAAATACAGCAAAGAAATGATTTCGATGCAAAAGAAAATCATCCA
66 AATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA
* *** * *
238399 TACCATTTATCCTAATGAGGAGAATGTTTTTATAGTGACTAATCACAAAATGAATGGAA-ATCTA
131 TATCATTTATCCTAATGAGGAGAATAAGTTTATAGTGCCTAATCACAAAATGAAT-GAAGATCAA
* *
238463 TACTGGAATCCATGTTTGTCATAATTGAGGCACAAACTTAGACTTTACAAAAATTGGT-GGAAGA
195 TACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* *
238527 AAGCCTTTCTTGCGAAGCCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGT
260 AAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGT
*
238592 GCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAAC
325 GCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * *
238657 TTTGATTCTATCAAAAACGGTTGGAAGAAATGCTTTTCTTGAGACACCAAAGTGTCAATGTCATA
390 TTTGATTCTATCGAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATA
* *
238722 TATCCTAACGGAAGGAATGTGT
455 TATCCTAATGAAAGGAATGTGT
* * * *
238744 TTTT-GTTCCCAATCTTGAAAAGAGGGGAGACTGTTATGAGAATCATTGCTTG-CTTATTTAAGG
1 TTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGG
* * ** *
238807 AATTAA-ATTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCACACAAAAGAAAATCATCA
66 AATGAACA-TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCC
* * * *
238871 ATATCATTTATCCTAATGAGAAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGACCAT
130 ATATCATTTATCCTAATGAGGAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAA
* * * *
238936 TACTAGAATCCATGTTTATCACAATTGAGGCACGAACTTAGACTTTATC-GAAATTGGTGGGAAA
195 TACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAG
* * * *
239000 AAAG-CTTTCTAACGAAACCAAACCATCAATATCGTGTATCCATATGAGAAGACTAAGTTTATGG
259 AAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGG
** * * *
239064 TGCCTAATCGAAAAAAGAATGAGGATTAGTGTGACAACTCATGTTTGTCTTATTTAAG-GACAAA
324 TGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* *
239128 CTTTGATTCTATCCG-AAACGGTT-AGAAGAAATGCTTTTCTTGCGACATCAAAGCGTCAATGTT
389 CTTTGATTCTAT-CGAAAACGGTTGA-AAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTC
* *
239191 GTGTATCCTAATGAAAGGAATGTGT
452 ATATATCCTAATGAAAGGAATGTGT
* * *
239216 TTTTCGTTCCCAAT-ATCAAAAAGAGTGGAGACTGTTACAAGAATCAATGCTTGCCTTATTTAAG
1 TTTTGGTTCCCAATCAT-GAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAG
*
239280 GAATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCC
65 GAATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCC
* * * * * ** *
239345 ATATCATTTATCGTAAGGAGGAGAACAAGTTTATACTACCTAATCACAACGTGAATGAAGATCAT
130 ATATCATTTATCCTAATGAGGAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAA
* * * * * *
239410 TACTAGAATCCATGTTTGGCACT-TTTGTGGCGCGAACATAGACTTTACCAAAATTGGTGGGAAG
195 TACTAGAATCCATGTTTGTCA-TAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG
* * * * * *
239474 GAAG-CTTTCTTATGAAACCAAACCATCAATATCGTGTATCCTTATGGGAAAACTAA
259 AAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAA
239530 TGATGAAAAG
Statistics
Matches: 1514, Mismatches: 204, Indels: 38
0.86 0.12 0.02
Matches are distributed among these distances:
472 103 0.07
473 342 0.23
474 441 0.29
475 162 0.11
476 462 0.31
477 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
TTTTGGTTCCCAATCATGAAAAGAGTGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGG
AATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCA
TATCATTTATCCTAATGAGGAGAATAAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAAT
ACTAGAATCCATGTTTGTCATAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
AGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTG
CCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATCGAAAACGGTTGAAAGAAATGCTTTTCTTGCGACACCAAAGCGTCAATGTCATAT
ATCCTAATGAAAGGAATGTGT
Found at i:245097 original size:42 final size:42
Alignment explanation
Indices: 245045--245163 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
245035 TTCTTCTCTC
* *
245045 CTCCTCCTATCATCCCTCTTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
245087 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
245129 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
245164 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:245104 original size:12 final size:11
Alignment explanation
Indices: 245078--245153 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
245068 TCTATTATCT
*
245078 CTCCTGTCTCTC
1 CTCCTATCTC-C
245090 CTCCTATCATCC
1 CTCCTATC-TCC
245102 CTCCTATCT--
1 CTCCTATCTCC
*
245111 CTACTATCT--
1 CTCCTATCTCC
*
245120 CTCCTGTCTCTC
1 CTCCTATCTC-C
245132 CTCCTATCATCC
1 CTCCTATC-TCC
*
245144 CTCCTCTCTC
1 CTCCTATCTC
245154 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:247574 original size:474 final size:475
Alignment explanation
Indices: 246446--247668 Score: 1819
Period size: 475 Copynumber: 2.6 Consensus size: 475
246436 GTTTTCATCA
*
246446 CTTTCATGTGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTC
1 CTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTC
*
246511 AATCTTGAAAA-AGGTGGAGCCTGTTACGAGAATCAATACTTGCCTTATTTAAGGAATGAACTTT
66 AATCTCGAAAAGA-GTGGAGCCTGTTACGAGAATCAATACTTGCCTTATTTAAGGAATGAACTTT
*
246575 GTTTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCCATATCATTTAT
130 GTTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTAT
* *
246640 CCTAATAA-GAGAATAAGTTTATACTGCCTAATCACAAAGTG-ATTAATGATCACTACTAGAATC
195 CCTAA-AAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAA-GATCATTACTAGAATC
246703 CATGTTTGTCACATTTGAGGCACGAACGTAGACTCTACCAAAATTGGTGGGAAGAAAGCATTTCT
258 CATGTTTGTCACATTTGAGGCACGAACGTAGACTCTACCAAAATTGGTGGGAAGAAAGCATTTCT
* * * * *
246768 TATAAAACCAAAGCATCAATATTGTGTATCATTATGAGAAGACTAAGTTTATGGCGCCTAATCCA
323 TACAAAACCAAACCATCAATATCGTGAATCATTATGAGAAGACTAAGTTTATGGCGCCTAAACCA
*
246833 AAAAAGAATAAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGGTGCTA
388 AAAAAGAATAAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATGCTA
246898 TCAAAAACGGTTGAAAGAAATGC
453 TCAAAAACGGTTGAAAGAAATGC
* * * * * * * * ** *
246921 TTTTCCTACGACATTAAAACGCCAATGTCGCATATCCTATTGAAAAGAATGTGTTTTTCATTCCC
1 CTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTC
* * * *
246986 AATCTCGAAAAGAGTGGAGACTGTTATGAAAATCAATACTTGCCTTATTTAAGGAATGAACTTCG
66 AATCTCGAAAAGAGTGGAGCCTGTTACGAGAATCAATACTTGCCTTATTTAAGGAATGAACTTTG
* * * * * *
247051 ATTGTAAGGAAAATAGGGCAAAGAAAAGATTTCCGTACAAAAAAAAATCATCCACATCATTTATC
131 TTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATC
* * *
247116 CCAAGGAGGAGAATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTAGAATCCA
196 CTAA-AAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCA
* * * * *
247181 CGTTTGGCACATTTGAGGCATGAACGTAGACTTTACCAAAATTGGTGGGAAGAGAGC-TTTCTTA
260 TGTTTGTCACATTTGAGGCACGAACGTAGACTCTACCAAAATTGGTGGGAAGAAAGCATTTCTTA
* * *
247245 CGAAACCAAACCTTCAATATCGTGAAT-ACTTATGAGAAGACTAAGTTTATGGTGCCTAAACCAA
325 CAAAACCAAACCATCAATATCGTGAATCA-TTATGAGAAGACTAAGTTTATGGCGCCTAAACCAA
* * * *
247309 AAAAGAATGAGGATTTGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
389 AAAAGAATAAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATGCTAT
* *
247374 C-AAAATGGTTGGAAGAAATGC
454 CAAAAACGGTTGAAAGAAATGC
247395 CTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTC
1 CTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTC
*
247460 AATCTCGAAAAGAGTGGAGCCTGTTACGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTTG
66 AATCTCGAAAAGAGTGGAGCCTGTTACGAGAATCAATACTTGCCTTATTTAAGGAATGAACTTTG
* *
247525 TTTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCCATATCATTTATC
131 TTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATC
* ** * * * *
247590 CTAATAAGGAGACTTTGTTTATAGTGCCTTATCACAAAGTAAATGATGATCATTACTAGAATCCA
196 CTAA-AAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCA
247655 TGTTTGTCACATTT
260 TGTTTGTCACATTT
247669 ATCCTAATGA
Statistics
Matches: 657, Mismatches: 87, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
474 256 0.39
475 295 0.45
476 102 0.16
477 4 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (475 bp):
CTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTC
AATCTCGAAAAGAGTGGAGCCTGTTACGAGAATCAATACTTGCCTTATTTAAGGAATGAACTTTG
TTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCATATCATTTATC
CTAAAAGGAGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCAT
GTTTGTCACATTTGAGGCACGAACGTAGACTCTACCAAAATTGGTGGGAAGAAAGCATTTCTTAC
AAAACCAAACCATCAATATCGTGAATCATTATGAGAAGACTAAGTTTATGGCGCCTAAACCAAAA
AAGAATAAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATGCTATCA
AAAACGGTTGAAAGAAATGC
Found at i:247673 original size:82 final size:82
Alignment explanation
Indices: 247582--247750 Score: 277
Period size: 82 Copynumber: 2.1 Consensus size: 82
247572 TCATCCATAT
* * * *
247582 CATTTATCCTAAT-AAGGAGACTTTGTTTATAGTGCCTTATCACAAAGTAAATGATGATCATTAC
1 CATTTATCCTAATGAA-AAGAATATGTTTATAGTGCCTAATCACAAAGTAAATGATGATCATTAC
247646 TAGAATCCATGTTTGTCA
65 TAGAATCCATGTTTGTCA
*
247664 CATTTATCCTAATGAAAAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGATGATCATTACT
1 CATTTATCCTAATGAAAAGAATATGTTTATAGTGCCTAATCACAAAGTAAATGATGATCATTACT
247729 AGAATCCATGTTTGTCA
66 AGAATCCATGTTTGTCA
247746 CATTT
1 CATTT
247751 GAGGTACGAA
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
82 79 0.98
83 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.36
Consensus pattern (82 bp):
CATTTATCCTAATGAAAAGAATATGTTTATAGTGCCTAATCACAAAGTAAATGATGATCATTACT
AGAATCCATGTTTGTCA
Found at i:248170 original size:558 final size:556
Alignment explanation
Indices: 247125--248226 Score: 1625
Period size: 558 Copynumber: 2.0 Consensus size: 556
247115 CCCAAGGAGG
*
247125 AGAATAAGTTTATACTGCCTAATCACAATGTGAATGAAGATCATTACTAGAATCCACGTTTGGCA
1 AGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCACGTTTGGCA
* * * *
247190 CATTTGAGGCATGAACGTAGACTTTACCAAAATTGGTGGGAAGAGAGCTTTCTTACGAAACCAAA
66 CATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCTTTCTTACAAAACCAAA
* *
247255 CCTTCAATATCGTGAATACTTATGAGAAGACTAAGTTTATGGTGCCTAAACCAAAAAAGAATGAG
131 CCATCAATATCGTGAATACTTATGAGAAAACTAAGTTTATGGTGCCTAAACCAAAAAAGAATGAG
* * * * * **
247320 GATTTGTGTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAATGGTTG
196 GATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATACTATAAAAACAGTTG
* * * *
247385 GAAGAAATGCCTTTCATGCGACATTAAAGCGTCAATGTCGCGTATCCTAATGAAAGGAATGTGTT
261 AAAGAAATACCTTTCATACGACATTAAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGTT
* * ** * *
247450 TTTGGTTCTCAATCTCGAAAAGAGTGGAGCCTGTTACGAGAATCAATGCTTGCCTTATTTAAGGA
326 TTTGATTCCCAATCTCGAAAAGAGCAGAGACTGTTACGAGAATCAATGCTTGCCTCATTTAAGGA
* *
247515 ATGAACTTTGTTTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCCAT
391 ATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCAT
* * * * ** * *
247580 ATCATTTATCCTAATAAGGAGACTTTGTTTATAGTGCCTTATCACAAAGTAA-ATGATGATCATT
456 ATCATTTATCATAAGAAGAAGAATAAGTTTATACTGCCTAATCACAAAGTAATA-GATGATCATT
247644 ACTAGAATCCATGTTTGTCACATTTATCCTAATGAAA
520 ACTAGAATCCATGTTTGTCACATTTATCCTAATGAAA
* * * * *
247681 AGAATATGTTTATAGTGCCTAATCACAAAGTGAATGATGATCATTACTAGAATCCATGTTTGTCA
1 AGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCACGTTTGGCA
*
247746 CATTTGAGGTACGAACATAGACTTT-CTCAAAATTGGTGGGAAGAAAGCATTTCTTACAAAACCA
66 CATTTGAGGCACGAACATAGACTTTAC-CAAAATTGGTGGGAAGAAAGC-TTTCTTACAAAACCA
* * *
247810 AAGCATCAATATCGTGTAT-CATTATGAGAAAACTAAGTTTATGGTGCCTAATCCAAAAAAGAAT
129 AACCATCAATATCGTGAATAC-TTATGAGAAAACTAAGTTTATGGTGCCTAAACCAAAAAAGAAT
* *
247874 GAGGATTAGTATGACTATTCATGTTTGCCTTATTTATGAGACAAACTTTGGTACTATTAAAAACA
193 GAGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATACTA-TAAAAACA
* * *
247939 GTTGAAAGAAATACTTTTCTTACGACATTAAAGCATCAATGTCGCGTATCCTATTGAAAGGAATG
257 GTTGAAAGAAATACCTTTCATACGACATTAAAGCATCAATGTCGCGTATCCTAATGAAAGGAATG
* * *
248004 TGTTTTTGATTCCCAATCTCGGAAAGAGCAGAGATTGTTATGAGAATCAATGCTTGCCTCATTTA
322 TGTTTTTGATTCCCAATCTCGAAAAGAGCAGAGACTGTTACGAGAATCAATGCTTGCCTCATTTA
* *
248069 AGGAATGAACTTTGATTTTAAAGAAAATATGGCAAAGAAAAGGTTTCCATGCAAAAGAAAATCAT
387 AGGAATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
** *
248134 CCATATCATTTATCATAAGGCGAAGAATAAGTTTATACTGCCTAATCACAAAGTGATAGATGATC
452 CCATATCATTTATCATAAGAAGAAGAATAAGTTTATACTGCCTAATCACAAAGTAATAGATGATC
*
248199 ATTACTGGAATCCATGTTTGTCACATTT
517 ATTACTAGAATCCATGTTTGTCACATTT
248227 GAGGCACGAA
Statistics
Matches: 484, Mismatches: 57, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
555 1 0.00
556 102 0.21
557 121 0.25
558 259 0.54
559 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (556 bp):
AGAATAAGTTTATACTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAATCCACGTTTGGCA
CATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGGAAGAAAGCTTTCTTACAAAACCAAA
CCATCAATATCGTGAATACTTATGAGAAAACTAAGTTTATGGTGCCTAAACCAAAAAAGAATGAG
GATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATACTATAAAAACAGTTG
AAAGAAATACCTTTCATACGACATTAAAGCATCAATGTCGCGTATCCTAATGAAAGGAATGTGTT
TTTGATTCCCAATCTCGAAAAGAGCAGAGACTGTTACGAGAATCAATGCTTGCCTCATTTAAGGA
ATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCCAT
ATCATTTATCATAAGAAGAAGAATAAGTTTATACTGCCTAATCACAAAGTAATAGATGATCATTA
CTAGAATCCATGTTTGTCACATTTATCCTAATGAAA
Found at i:248696 original size:479 final size:474
Alignment explanation
Indices: 247664--248766 Score: 1542
Period size: 479 Copynumber: 2.3 Consensus size: 474
247654 ATGTTTGTCA
247664 CATTTATCCTAATGAA-AAGAATATGTTTATAGTGCCTAATCACAAAGTGAATGATGATCATTAC
1 CATTTATCCTAAT-AAGAAGAATATGTTTATAGTGCCTAATCACAAAGT-AATGATGATCATTAC
* * *
247728 TAGAATCCATGTTTGTCACATTTGAGGTACGAACATAGACTTTCTCAAAATTGGTGGGAAGAAAG
64 TAGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTAC-CAAAATTGGTGGGAAAAAAG
* *
247793 CATTTCTTACAAAACCAAAGCATCAATATCGTGTATCATTATGAGAAAACTAAGTTTATGGTGCC
128 CATTTCTTACAAAACCAAAGCATCAATATCATGTATCATTACGAGAAAACTAAGTTTATGGTGCC
* *
247858 TAATCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGCCTTATTTATGAGACAAACTTT
193 TAATCCAAAAAAAAATGAGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTT
* *
247923 GGTACTATTAAAAACAGTTGAAAGAAATACTTTTCTTACGACATTAAAGCATCAATGTCGCGTAT
258 GGTACTATCAAAAACAGTTGAAAGAAATACTTTTCTTACGACATTAAAGCATCAATGTCGCATAT
* * *
247988 CCTATTGAAAGGAATGTGTTTTTGATTCCCAATCTCGGAAAGAGCAGAGATTGTTATGAGAATCA
323 CCTATTGAAAGGAACGTGTTTTTGATTCCCAATCTCGAAAAGAGCAGAGACTGTTATGAGAATCA
* *
248053 ATGCTTGCCTCATTTAAGGAATGAACTTTGATTTTAAAGAAAATATGGCAAAGAAAAGGTTTCCA
388 ATGCTTGCCTCATTTAAGGAATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCA
*
248118 TGCAAAAGAAAATCATCCATAT
453 TGCAAAAGAAAATCATCCAGAT
* *** * * *
248140 CATTTATCATAAGGCGAAGAATAAGTTTATACTGCCTAATCACAAAGTGATAGATGATCATTACT
1 CATTTATCCTAATAAGAAGAATATGTTTATAGTGCCTAATCACAAAGTAAT-GATGATCATTACT
* * *
248205 GGAATCCATGTTTGTCACATTTGAGGCACGAACATAAACTCTACCAAAATTGATGGGAAAAAAGC
65 AGAATCCATGTTTGTCACATTTGAGGCACGAACATAGACT-TACCAAAATTGGTGGGAAAAAAGC
* * * *
248270 ATTTCTTATAAAACCAAGGCATCAATATCATGTATCATTACGAGAAGATTAAGTTTATGGTGCCT
129 ATTTCTTACAAAACCAAAGCATCAATATCATGTATCATTACGAGAAAACTAAGTTTATGGTGCCT
* *
248335 AATCCAAAAAAAAAAATGAGGATTAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTT
194 AATCC--AAAAAAAAATGAGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTT
* ** * * * *
248400 TGGTGCTATCAAAAATGGTTGAAAGAAATGCTTTTGTTGCGACATTAAAGCGTCAATGTCGCATA
257 TGGTACTATCAAAAACAGTTGAAAGAAATACTTTTCTTACGACATTAAAGCATCAATGTCGCATA
* ** *
248465 TCCTATTGAAAGGAACGTGTTTTTGGTTCCCAATCTCGAAAAGAGTTGGAGCCTGTTATGAGAAT
322 TCCTATTGAAAGGAACGTGTTTTTGATTCCCAATCTCGAAAAGAG-CAGAGACTGTTATGAGAAT
* * *
248530 CAATGCTTGCCTTATTTAAGGAATGAACTTTGTTTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
386 CAATGCTTGCCTCATTTAAGGAATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTC
*
248595 CATGCAAAAGAAAATCATCCAGGT
451 CATGCAAAAGAAAATCATCCAGAT
* * * * * * *
248619 CATTTATCCTAATAAGGAGACTTTGTTTATAGTGCCTTATCACAAAGTAAATGAAGATCGTAACT
1 CATTTATCCTAATAAGAAGAATATGTTTATAGTGCCTAATCACAAAGT-AATGATGATCATTACT
* * * * * *
248684 ACAATCCATGTTTGCCATAATTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAATAAAGC
65 AGAATCCATGTTTGTCACATTTGAGGCACGAACATAGAC-TTACCAAAATTGGTGGGAAAAAAGC
* ** *
248749 CTTTAATACGAAACCAAA
129 ATTTCTTACAAAACCAAA
248767 TGATCATCCA
Statistics
Matches: 544, Mismatches: 75, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
475 2 0.00
476 174 0.32
477 2 0.00
478 152 0.28
479 211 0.39
480 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (474 bp):
CATTTATCCTAATAAGAAGAATATGTTTATAGTGCCTAATCACAAAGTAATGATGATCATTACTA
GAATCCATGTTTGTCACATTTGAGGCACGAACATAGACTTACCAAAATTGGTGGGAAAAAAGCAT
TTCTTACAAAACCAAAGCATCAATATCATGTATCATTACGAGAAAACTAAGTTTATGGTGCCTAA
TCCAAAAAAAAATGAGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGGT
ACTATCAAAAACAGTTGAAAGAAATACTTTTCTTACGACATTAAAGCATCAATGTCGCATATCCT
ATTGAAAGGAACGTGTTTTTGATTCCCAATCTCGAAAAGAGCAGAGACTGTTATGAGAATCAATG
CTTGCCTCATTTAAGGAATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGC
AAAAGAAAATCATCCAGAT
Found at i:249662 original size:472 final size:469
Alignment explanation
Indices: 248778--249706 Score: 1377
Period size: 472 Copynumber: 2.0 Consensus size: 469
248768 GATCATCCAT
*
248778 GAATCAATGCTAGCCTTATTTAAGGAATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGA
1 GAATCAATGCTAGCCTTATTTAAGGAATGAACTTTAATTTTAAGAAAAATAGGGCAAAGAAAAGA
* * * *
248843 TTTTCGTGTAAAAGAAAATCATCTATATCATTTATCCTAATAAGAGAATAATTTTATAGTGCCTA
66 TTTTCATGCAAAAGAAAATCATCTATATCATTTATCCTAACAAGAGAATAAGTTTATAGTGCCTA
* * * *
248908 ATCACAAAATGAATGATGATTATTACTAGAATCCATGTTTGTCACATTTGAGGCATGAATGTAGA
131 ATCACAAAATGAATGATGATCATTACTAGAATCCATGTCTGTCACATTTGAGGCACGAACGTAGA
* * * * *
248973 CTTTACAATTGGCGGGAGGAAAGCATTTCTTACAAAACCAAATGATCAATATCGTGTATCCTTAT
196 CTTTACAATTGGCGGGAAGAAAGCA--T-TAACAAAACCAAATGATCAATATCATGTATCATCAT
* * *
249038 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTTGTGTGACTATGGATGTTT
258 GAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGACTATGCATGTTT
* *
249103 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGGAAGAAAAGCCTTTTCTTACGAC
323 TCTTATTTAAGAGACAAACTTTGATACTATCAAAAACGGTTGAAAGAAAAGCCTTTTCTTACGAC
* *
249168 ATTAAAGCATCAATGTCACGTATCCTATTGAAAGGAATGTGCTTTTGGTTCCCAATCTTGAAAAG
388 ATTAAAGCATCAATGTCACGTATCCTATTGAAAGGAATGTGCTTTTGGTTCCAAATCTCGAAAAG
249233 AGCAGAGATTCTTATGA
453 AGCAGAGATTCTTATGA
** *
249250 GAATCAATGCTTTCCTTATTTAAGGAATGAACTTTAATTTTAA-AGAAAATAGGGCGAAGAAAAG
1 GAATCAATGCTAGCCTTATTTAAGGAATGAACTTTAATTTTAAGA-AAAATAGGGCAAAGAAAAG
249314 ATTTAT-ATGCAAAAGAAAATCATCCT-TATCATTTATCCTAACAAGAGAATAAGTTTATAGTGC
65 ATTT-TCATGCAAAAGAAAATCAT-CTATATCATTTATCCTAACAAGAGAATAAGTTTATAGTGC
*
249377 CTAATCACAAAGTGAATGATGATCATTACTAGAATCCATGTCTGTCACATTTGAGGCACGAACGT
128 CTAATCACAAAATGAATGATGATCATTACTAGAATCCATGTCTGTCACATTTGAGGCACGAACGT
*
249442 AGACTTTACCAAAATTGGTGGGAAGAAAGCA-TAAGCAAAACCAAA-GCATCAATATCATGTATC
193 AGACTTTA-C--AATTGGCGGGAAGAAAGCATTAA-CAAAACCAAATG-ATCAATATCATGTATC
* **
249505 ATCATGAGAAGAGTAAGTTTATGGTGCCTAATCCAAAAACTAATGAGGATTAGTATGACTACT-C
253 ATCATGAGAAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGACTA-TGC
* * *
249569 ATGTTTGTCTTATTTAAGAGACAAACTTTGGTACTATCAAAAACGGTTGAAAGAAATG-TTTTTC
317 ATGTTT-TCTTATTTAAGAGACAAACTTTGATACTATCAAAAACGGTTGAAAGAAAAGCCTTTTC
* * *
249633 TTGCGACATTAAAGCGTCAATGTCACGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCAAATCT
381 TTACGACATTAAAGCATCAATGTCACGTATCCTATTGAAAGGAATGTGCTTTTGGTTCCAAATCT
249698 CGAAAAGAG
446 CGAAAAGAG
249707 TGGAGATTTT
Statistics
Matches: 412, Mismatches: 35, Indels: 20
0.88 0.07 0.04
Matches are distributed among these distances:
471 4 0.01
472 339 0.82
473 52 0.13
475 17 0.04
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (469 bp):
GAATCAATGCTAGCCTTATTTAAGGAATGAACTTTAATTTTAAGAAAAATAGGGCAAAGAAAAGA
TTTTCATGCAAAAGAAAATCATCTATATCATTTATCCTAACAAGAGAATAAGTTTATAGTGCCTA
ATCACAAAATGAATGATGATCATTACTAGAATCCATGTCTGTCACATTTGAGGCACGAACGTAGA
CTTTACAATTGGCGGGAAGAAAGCATTAACAAAACCAAATGATCAATATCATGTATCATCATGAG
AAGACTAAGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGACTATGCATGTTTTCT
TATTTAAGAGACAAACTTTGATACTATCAAAAACGGTTGAAAGAAAAGCCTTTTCTTACGACATT
AAAGCATCAATGTCACGTATCCTATTGAAAGGAATGTGCTTTTGGTTCCAAATCTCGAAAAGAGC
AGAGATTCTTATGA
Found at i:252862 original size:12 final size:11
Alignment explanation
Indices: 252840--252915 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
252830 AGAGAAAGAA
*
252840 GAGAGAGGAGG
1 GAGATAGGAGG
252851 GATGATAGGAGG
1 GA-GATAGGAGG
*
252863 AGAGACAGGA--
1 -GAGATAGGAGG
*
252873 GAGATAGTA--
1 GAGATAGGAGG
252882 GAGATAGGAGG
1 GAGATAGGAGG
252893 GATGATAGGAGG
1 GA-GATAGGAGG
*
252905 AGAGACAGGAG
1 -GAGATAGGAG
252916 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:252872 original size:24 final size:24
Alignment explanation
Indices: 252839--252924 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
252829 AAGAGAAAGA
*
252839 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
252863 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
252881 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
252905 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
252925 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:252891 original size:42 final size:42
Alignment explanation
Indices: 252830--252948 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
252820 TAGCCCTCAA
* *
252830 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
252872 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
252914 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
252949 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:261608 original size:42 final size:42
Alignment explanation
Indices: 261553--261671 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
261543 TTCTTCTCTC
* *
261553 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
261595 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
261637 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
261672 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:261612 original size:12 final size:11
Alignment explanation
Indices: 261586--261661 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
261576 TCTATTATCT
*
261586 CTCCTGTCTCTC
1 CTCCTATCTC-C
261598 CTCCTATCATCC
1 CTCCTATC-TCC
261610 CTCCTATCT--
1 CTCCTATCTCC
*
261619 CTACTATCT--
1 CTCCTATCTCC
*
261628 CTCCTGTCTCTC
1 CTCCTATCTC-C
261640 CTCCTATCATCC
1 CTCCTATC-TCC
*
261652 CTCCTCTCTC
1 CTCCTATCTC
261662 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:261613 original size:24 final size:24
Alignment explanation
Indices: 261577--261662 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
261567 CCTCCTCTCT
* *
261577 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
261601 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
261622 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
261643 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
261663 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Done.